Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 52 of 230
Found at i:14021237 original size:649 final size:652
Alignment explanation
Indices: 14019998--14021351 Score: 2065
Period size: 649 Copynumber: 2.1 Consensus size: 652
14019988 AGTGTAAGGA
* * * * **
14019998 AGCAGATTTAAGCCACA-AATCATATCTTCCTAAAGTTGTAGTGGAGCAGATTAAAGTAATAGAT
1 AGCAGATTGAAGCCA-ATAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGAT
* * * * * *
14020062 CTTATCTCTCTAAAGTTGCATTAGAGTGGATTGCATTAGGTCTTATCTCCCTGAGGTTGCAGCGG
65 CTTATCTCTCTAAA--TGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGG
14020127 AGCAGACTGAGTAAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGGACACATCGAAGATGGCAAAT
128 AGCAGACTGAGTAAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGGACACATCGAAGATGGCAAAT
* *
14020192 CTTATCTCCCTGAGGTTGCAGTGGAGCTGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAG
193 CTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAG
* * * * *
14020257 TGGAGCGGATTAAAGTAATAGATCTTATCTCTTTGAAGTTACAGTAGAGTGGATCGCATTAGGTC
258 AGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
* ** * * **
14020322 TTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCGTAAAGTTGTAGT
323 TTATCTCCCTAAGGTCACAGCGGAGAAGACTGAGTAAGCAGATCTTATCCCCGTAAAGCAGTAGT
* *
14020387 GCGACAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCACATTGAAGCCGATA
388 GCGACAGATCGAAGATGGAAAATATTATCTCCCTGAGGTTGCAGTGGAGCACATTGAAGCCGATA
* *
14020452 ATTCTATCTCCCTGAAGTTGTAGTAGAGTGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTAC
453 ATCCTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTAC
*
14020517 AATAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGG
518 AATAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAGG
* *
14020582 TCTTATCCCCCTGAAGTTGCAGTGGGACAAATCGAAGATGGAAAATCTTATCTCCCTGAGGTTGC
583 TCTTATCCCCCTAAAGTTACAGTGGGACAAATCGAAGATGGAAAATCTTATCTCCCTGAGGTTGC
14020647 -AGTAG
648 AAG-AG
* *
14020652 AGCAGATTGAAGCCAATAATCCTATCCCCCTGAAGTTGCAGTGGAGTGGATTAAAGTAATAGATC
1 AGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGATC
*
14020717 TTATCTCTCTGAA-GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGGAGC
66 TTATCTCTCTAAATGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGGAGC
* * * * * *
14020781 AGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGTTGGCAGATCTT
131 AGACTGAGTAAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGGACACATCGAAGATGGCAAATCTT
* *
14020846 ATCTCCCTAAGGTTGCAGTGGAGCAGATTGAAGCTGATAATCCTATCTCCCTGAAGTTGTAGAGG
196 ATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGAGG
**
14020911 AGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATCA-GTCTTA
261 AGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
14020975 TCTCCCTAAGGTCACAGCGGAGAAGACTGAGTAAGCAGATCTTATCTCCC-T-AAGCAGTAGTG-
326 TCTCCCTAAGGTCACAGCGGAGAAGACTGAGTAAGCAGATCTTATC-CCCGTAAAGCAGTAGTGC
* * *
14021037 GAGCAGATTGAAGATGGAAAATATTATCTCCCTGAGGTTGCAGTGGAGTAGATTGAAGCCGATAA
390 GA-CAGATCGAAGATGGAAAATATTATCTCCCTGAGGTTGCAGTGGAGCACATTGAAGCCGATAA
*
14021102 TCCTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCA
454 TCCTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACA
*
14021167 GTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAGGT
519 ATAGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAGGT
* * * * *
14021232 CTTATCCCCCTAAAGTTACAGTGGGGCAGATCGAATATGGCAAATGTTATCTCCCTGAGGTTGCA
584 CTTATCCCCCTAAAGTTACAGTGGGACAAATCGAAGATGGAAAATCTTATCTCCCTGAGGTTGCA
*
14021297 AGGG
649 AGAG
* * *
14021301 AGCAGATTGAAGTCGATAATCCTATCTCCCTGACGTTGTAGTGGAGTGGAT
1 AGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGAT
14021352 CGAAGCACCA
Statistics
Matches: 634, Mismatches: 62, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
648 2 0.00
649 295 0.47
650 50 0.08
651 219 0.35
653 1 0.00
654 67 0.11
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (652 bp):
AGCAGATTGAAGCCAATAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGATC
TTATCTCTCTAAATGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGGAGC
AGACTGAGTAAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGGACACATCGAAGATGGCAAATCTT
ATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGTAGAGG
AGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTA
TCTCCCTAAGGTCACAGCGGAGAAGACTGAGTAAGCAGATCTTATCCCCGTAAAGCAGTAGTGCG
ACAGATCGAAGATGGAAAATATTATCTCCCTGAGGTTGCAGTGGAGCACATTGAAGCCGATAATC
CTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTACAAT
AGAGTGGATCGCATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCT
TATCCCCCTAAAGTTACAGTGGGACAAATCGAAGATGGAAAATCTTATCTCCCTGAGGTTGCAAG
AG
Found at i:14022871 original size:23 final size:22
Alignment explanation
Indices: 14022844--14022903 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
14022834 TGACATTACC
14022844 TTTAAACTTATTATTAATATAAT
1 TTTAAA-TTATTATTAATATAAT
* *
14022867 TTTAAAATGTAATA-TAATATTAT
1 TTT-AAAT-TATTATTAATATAAT
14022890 TTTAAATTATTATT
1 TTTAAATTATTATT
14022904 GACATGTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 4 0.13
22 5 0.16
23 15 0.48
24 7 0.23
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAAATTATTATTAATATAAT
Found at i:14022934 original size:21 final size:22
Alignment explanation
Indices: 14022885--14022934 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
14022875 GTAATATAAT
*
14022885 ATTATTTTAAATTATTATTGAC
1 ATTATTTTAAATTATCATTGAC
*
14022907 A-TGTTTTAAATTTATCA-T-AC
1 ATTATTTTAAA-TTATCATTGAC
14022927 ATTATTTT
1 ATTATTTT
14022935 TTTTAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
20 3 0.13
21 14 0.61
22 6 0.26
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (22 bp):
ATTATTTTAAATTATCATTGAC
Found at i:14024223 original size:9 final size:9
Alignment explanation
Indices: 14024209--14024594 Score: 264
Period size: 9 Copynumber: 46.2 Consensus size: 9
14024199 AAAAAACAAA
14024209 AACTTACAT
1 AACTTACAT
14024218 AACTTACAT
1 AACTTACAT
*
14024227 AA--TATCCT
1 AACTTA-CAT
*
14024235 -ACATA-AT
1 AACTTACAT
14024242 AACTTACAT
1 AACTTACAT
14024251 AA-TAATACAT
1 AACT--TACAT
*
14024261 AACCTACAT
1 AACTTACAT
* *
14024270 AAATTAAAT
1 AACTTACAT
*
14024279 AAGTTACAT
1 AACTTACAT
*
14024288 AA--TACAC
1 AACTTACAT
** *
14024295 AA-AAACAAA
1 AACTTAC-AT
14024304 AACTTACAT
1 AACTTACAT
14024313 AACTTACAT
1 AACTTACAT
14024322 AA--TACAT
1 AACTTACAT
14024329 AACTTACAT
1 AACTTACAT
* *
14024338 AACCTACTT
1 AACTTACAT
14024347 AA--TACAT
1 AACTTACAT
14024354 AACTTACAT
1 AACTTACAT
*
14024363 AA--TACAC
1 AACTTACAT
14024370 AACTTACAT
1 AACTTACAT
*
14024379 AACTTATAT
1 AACTTACAT
*
14024388 AA--GAC--
1 AACTTACAT
14024393 AACTTACAT
1 AACTTACAT
* *
14024402 AATTTACTT
1 AACTTACAT
14024411 AA--TACAT
1 AACTTACAT
14024418 AACTTACAT
1 AACTTACAT
14024427 AA--TACAT
1 AACTTACAT
14024434 AACTTACAT
1 AACTTACAT
*
14024443 AACCTACAT
1 AACTTACAT
*
14024452 AA--GACAT
1 AACTTACAT
14024459 AACTTACAT
1 AACTTACAT
* *
14024468 AAGTTTCAT
1 AACTTACAT
*
14024477 AA--TACAC
1 AACTTACAT
14024484 AACTTACAT
1 AACTTACAT
14024493 AACTTACAT
1 AACTTACAT
14024502 AA--TACAT
1 AACTTACAT
14024509 AACTTACAT
1 AACTTACAT
* *
14024518 AATTTACTT
1 AACTTACAT
14024527 AA--TACAT
1 AACTTACAT
14024534 AACTTACAT
1 AACTTACAT
14024543 AACTTACAT
1 AACTTACAT
14024552 AA--TACAT
1 AACTTACAT
14024559 AACTTACAT
1 AACTTACAT
* *
14024568 AATTTACTT
1 AACTTACAT
14024577 AA--TACAT
1 AACTTACAT
14024584 AACTTACAT
1 AACTTACAT
14024593 AA
1 AA
14024595 ATATATGATG
Statistics
Matches: 299, Mismatches: 41, Indels: 74
0.72 0.10 0.18
Matches are distributed among these distances:
5 2 0.01
7 82 0.27
8 9 0.03
9 197 0.66
10 9 0.03
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:14024239 original size:12 final size:12
Alignment explanation
Indices: 14024216--14024255 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
14024206 AAAAACTTAC
*
14024216 ATAACTTACATA
1 ATAACCTACATA
*
14024228 ATATCCTACATA
1 ATAACCTACATA
*
14024240 ATAACTTACATA
1 ATAACCTACATA
14024252 ATAA
1 ATAA
14024256 TACATAACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAACCTACATA
Found at i:14024290 original size:34 final size:35
Alignment explanation
Indices: 14024252--14024595 Score: 142
Period size: 34 Copynumber: 9.6 Consensus size: 35
14024242 AACTTACATA
* *
14024252 ATAATACATAACCTACATAAA-TTAAATAAGTTAC
1 ATAATACATAACATACATAAACTTAAATAACTTAC
* * * *
14024286 ATAATACACAA-AAACAAAAACTTACATAACTTAC
1 ATAATACATAACATACATAAACTTAAATAACTTAC
*
14024320 ATAATACATAACTTACATAACCTACTTAATACATAACTTAC
1 ATAATACATAACATACATAA---ACTT-A-A-ATAACTTAC
* * * *
14024361 ATAATACACAACTTACAT-AACTTATATAA--GAC
1 ATAATACATAACATACATAAACTTAAATAACTTAC
* ** * *
14024393 A-ACTTACATAATTTAC-TTAA--TACATAACTTAC
1 ATA-ATACATAACATACATAAACTTAAATAACTTAC
* *
14024425 ATAATACATAACTTACATAACCTACATAAGACATAACTTAC
1 ATAATACATAACATACATAA---AC-TTA-A-ATAACTTAC
* * *
14024466 ATAAGTTTCAT-A-ATACA-CAACTTACATAACTTAC
1 ATAA--TACATAACATACATAAACTTAAATAACTTAC
*
14024500 ATAATACATAACTTACATAATTTACTTAATACATAACTTAC
1 ATAATACATAACATACATAA---ACTT-A-A-ATAACTTAC
* *
14024541 ATAACTTACAT-A-ATACAT-AACTTACATAATTTAC
1 ATAA--TACATAACATACATAAACTTAAATAACTTAC
* *
14024575 TTAATACATAACTTACATAAA
1 ATAATACATAACATACATAAA
14024596 TATATGATGT
Statistics
Matches: 234, Mismatches: 38, Indels: 75
0.67 0.11 0.22
Matches are distributed among these distances:
30 6 0.03
31 2 0.01
32 38 0.16
33 11 0.05
34 68 0.29
35 8 0.03
36 5 0.02
37 10 0.04
38 8 0.03
39 3 0.01
40 3 0.01
41 61 0.26
42 2 0.01
43 9 0.04
ACGTcount: A:0.49, C:0.19, G:0.01, T:0.31
Consensus pattern (35 bp):
ATAATACATAACATACATAAACTTAAATAACTTAC
Found at i:14024329 original size:16 final size:16
Alignment explanation
Indices: 14024308--14024594 Score: 192
Period size: 16 Copynumber: 18.0 Consensus size: 16
14024298 AACAAAAACT
14024308 TACATAACTTACATAA
1 TACATAACTTACATAA
14024324 TACATAACTTACAT-A
1 TACATAACTTACATAA
*
14024339 -AC----C-TACTTAA
1 TACATAACTTACATAA
14024349 TACATAACTTACATAA
1 TACATAACTTACATAA
*
14024365 TACACAACTTACATAA
1 TACATAACTTACATAA
* * *
14024381 CTTATATAA--GACA-ACT
1 --TACATAACTTACATA-A
* *
14024397 TACATAATTTACTTAA
1 TACATAACTTACATAA
14024413 TACATAACTTACATAA
1 TACATAACTTACATAA
14024429 TACATAACTTACATAA
1 TACATAACTTACATAA
*
14024445 CCTACATAA--GACATAA
1 --TACATAACTTACATAA
* *
14024461 CTTACATAAGTTTCATAA
1 --TACATAACTTACATAA
*
14024479 TACACAACTTACATAA
1 TACATAACTTACATAA
14024495 CTTACATAA--TACATAA
1 --TACATAACTTACATAA
* *
14024511 CTTACATAATTTACTTAA
1 --TACATAACTTACATAA
14024529 TACATAACTTACATAA
1 TACATAACTTACATAA
14024545 CTTACATAA--TACATAA
1 --TACATAACTTACATAA
* *
14024561 CTTACATAATTTACTTAA
1 --TACATAACTTACATAA
14024579 TACATAACTTACATAA
1 TACATAACTTACATAA
14024595 ATATATGATG
Statistics
Matches: 219, Mismatches: 27, Indels: 50
0.74 0.09 0.17
Matches are distributed among these distances:
9 4 0.02
10 2 0.01
11 2 0.01
14 8 0.04
15 3 0.01
16 157 0.72
17 1 0.00
18 42 0.19
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.33
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14024332 original size:25 final size:25
Alignment explanation
Indices: 14024304--14024594 Score: 347
Period size: 25 Copynumber: 11.4 Consensus size: 25
14024294 CAAAAACAAA
14024304 AACTTACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAT
* *
14024329 AACTTACATAACCTACTTAATACAT
1 AACTTACATAACTTACATAATACAT
*
14024354 AACTTACATAA--TACACAACTTACAT
1 AACTTACATAACTTACATAA--TACAT
* *
14024379 AACTTATATAAGACAACTTACATAATTTACTT
1 AACTTACAT-----AACTTACATAA--TACAT
14024411 AA--TACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAT
* *
14024434 AACTTACATAACCTACATAAGACAT
1 AACTTACATAACTTACATAATACAT
* * *
14024459 AACTTACATAAGTTTCATAATACAC
1 AACTTACATAACTTACATAATACAT
14024484 AACTTACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAT
* *
14024509 AACTTACATAATTTACTTAATACAT
1 AACTTACATAACTTACATAATACAT
14024534 AACTTACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAT
* *
14024559 AACTTACATAATTTACTTAATACAT
1 AACTTACATAACTTACATAATACAT
14024584 AACTTACATAA
1 AACTTACATAA
14024595 ATATATGATG
Statistics
Matches: 229, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
23 11 0.05
25 199 0.87
30 6 0.03
32 13 0.06
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.33
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAT
Found at i:14030141 original size:21 final size:21
Alignment explanation
Indices: 14030115--14030165 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14030105 CTGCAACTTA
*
14030115 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
*
14030136 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
*
14030157 AAGTAGAGG
1 AAGCAGAGG
14030166 TTCAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.47, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:14030226 original size:87 final size:87
Alignment explanation
Indices: 14030075--14030240 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
14030065 GACCATAGTT
* * * **
14030075 GAGGTTCAAAGGAAATATGAAGAACTCCAGCTGCAACTTAAAGCAGAGGCGGCAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGACAGCGAAAGAAGC
* *
14030140 AGAGGCTGCAGCGAGAGAAGTA
66 AGACGCTACAGCGAGAGAAGTA
* * *
14030162 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGTAGATGCGACATCGAAAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGACAGCGAAAGAAGC
14030227 AGACGCTACAGCGA
66 AGACGCTACAGCGA
14030241 AGGAAGCAGA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.40, C:0.18, G:0.29, T:0.13
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGACAGCGAAAGAAGC
AGACGCTACAGCGAGAGAAGTA
Found at i:14030675 original size:43 final size:43
Alignment explanation
Indices: 14030607--14030995 Score: 480
Period size: 43 Copynumber: 9.1 Consensus size: 43
14030597 AAATAGCTGT
* * * *
14030607 GTTTGTGTAAAAA-CGCTGCTAAAAGAACATGACCTTTAGTGGC
1 GTTTGTGGAAAAAGCGCCGCT-AAAGAACATGATCTTTAGCGGC
* * *
14030650 GTTTGCGGAAGAAGCGCCGCTAAAGAACATTATCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* *
14030693 GTTTGTGGAAAAAGCGCCGTTAAAGAACATGATCTTCAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* *
14030736 GTTTGTGGAAAAAGCGCTGCTAAGGAACATGATCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* *
14030779 GTTTGTGGAAAAAGCGCTGCTAAATAACATGATCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* *
14030822 GTTTGTAGAAAAAGCTCCGCTAAAGAACATGATCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* *
14030865 GTTTGTTGAAAAAGCGTCGCTAAAGAACATGATCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
* * *
14030908 GTTTGTAGG-AAAA-CGCCGCTAAAGACCCTGACCTTTAGCGGC
1 GTTTGT-GGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
****** * *
14030950 GTTT-TTTTCGTAGCTCCGCTAAAGAACATGACCTTTAGCGGC
1 GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
14030992 GTTT
1 GTTT
14030996 ATAAAAATAA
Statistics
Matches: 304, Mismatches: 38, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
41 2 0.01
42 59 0.19
43 236 0.78
44 7 0.02
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
GTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGC
Found at i:14034898 original size:37 final size:37
Alignment explanation
Indices: 14034857--14034937 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
14034847 TTTATGAAAC
*
14034857 ATAAAAAATATATAAAAGTATGT-GTATATATATAT-TT
1 ATAAAAAAT-TA-AAAAATATGTAGTATATATATATATT
* *
14034894 ATAAAAAATTAAAAAATGTGTACGTATATGTATATATT
1 ATAAAAAATTAAAAAATATGTA-GTATATATATATATT
14034932 ATAAAA
1 ATAAAA
14034938 CGTATGTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 8 0.21
36 2 0.05
37 20 0.53
38 8 0.21
ACGTcount: A:0.53, C:0.01, G:0.09, T:0.37
Consensus pattern (37 bp):
ATAAAAAATTAAAAAATATGTAGTATATATATATATT
Found at i:14035493 original size:22 final size:23
Alignment explanation
Indices: 14035458--14035546 Score: 78
Period size: 22 Copynumber: 4.0 Consensus size: 23
14035448 AAAGGATATC
*
14035458 TACAAATTAA-ATC-TCTAAGAT
1 TACAAAATAATATCTTCTAAGAT
14035479 TACAAAATAATATCTTCTAAGAT
1 TACAAAATAATATCTTCTAAGAT
* * *
14035502 TGC-ATATCATATCTTCTAAGAT
1 TACAAAATAATATCTTCTAAGAT
* * * *
14035524 TGC-ATATCATATCTTTTAAGAT
1 TACAAAATAATATCTTCTAAGAT
14035546 T
1 T
14035547 GCATATCATA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
21 9 0.15
22 42 0.69
23 10 0.16
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (23 bp):
TACAAAATAATATCTTCTAAGAT
Found at i:14035547 original size:22 final size:22
Alignment explanation
Indices: 14035488--14035572 Score: 140
Period size: 22 Copynumber: 4.0 Consensus size: 22
14035478 TTACAAAATA
14035488 ATATCTTCTAAGATTGCATATC
1 ATATCTTCTAAGATTGCATATC
14035510 ATATCTTCTAAGATTGCATATC
1 ATATCTTCTAAGATTGCATATC
*
14035532 ATATCTTTTAAGATTGCATATC
1 ATATCTTCTAAGATTGCATATC
14035554 ATA---TCTAAGATTGCATATC
1 ATATCTTCTAAGATTGCATATC
14035573 CTTGAAGATT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
19 15 0.25
22 46 0.75
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.41
Consensus pattern (22 bp):
ATATCTTCTAAGATTGCATATC
Found at i:14035582 original size:17 final size:17
Alignment explanation
Indices: 14035531--14035582 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
14035521 GATTGCATAT
*
14035531 CATATCTTTTAAGATTG
1 CATATCATTTAAGATTG
14035548 CATATCATATCTAAGATTG
1 CATATCAT-T-TAAGATTG
* *
14035567 CATATCCTTGAAGATT
1 CATATCATTTAAGATT
14035583 ATGTTTTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (17 bp):
CATATCATTTAAGATTG
Found at i:14036405 original size:44 final size:44
Alignment explanation
Indices: 14036357--14037119 Score: 1058
Period size: 44 Copynumber: 17.8 Consensus size: 44
14036347 ATCTGTAATT
* *
14036357 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAAGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* *
14036401 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
14036445 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
* *
14036489 TTCAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14036533 TTCAACCTATTCCACTGCTGACCAGGGAAATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
14036568 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGG-------A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
14036602 TTC-ACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14036645 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
*
14036689 TTCAACCTATTCCACTGCTGATCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14036733 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
*
14036777 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
14036821 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
* *
14036865 TTCAACCTATTCCACTTCTGACTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
14036909 TTCAACCTATTCCACTGCTAACCAGGGAGATAGAACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
14036953 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* * *
14036997 TTCAACCTATTCCAATGCTGACCAAGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14037041 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATC
** *
14037085 TTCAACCTATTCCACTGCTTTCCAGGGAGAAAGGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
14037120 CTAGTATATT
Statistics
Matches: 657, Mismatches: 40, Indels: 44
0.89 0.05 0.06
Matches are distributed among these distances:
34 62 0.09
35 3 0.00
37 1 0.00
41 1 0.00
43 12 0.02
44 568 0.86
45 10 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:14036580 original size:34 final size:34
Alignment explanation
Indices: 14036537--14036640 Score: 181
Period size: 34 Copynumber: 3.1 Consensus size: 34
14036527 ACAATCTTCA
*
14036537 ACCTATTCCACTGCTGACCAGGGAAATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
14036571 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* *
14036605 ACCTATTCCACTACTGACCAGGGAGATAGGACTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
14036639 AC
1 AC
14036641 AATCTTCAAC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:14038606 original size:14 final size:15
Alignment explanation
Indices: 14038583--14038615 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14038573 ATCGATGCTT
*
14038583 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
14038597 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
14038612 TTCC
1 TTCC
14038616 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:14042376 original size:23 final size:22
Alignment explanation
Indices: 14042342--14042385 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
14042332 AAATTATAAA
14042342 ATATAAAAATATATATATGTAC
1 ATATAAAAATATATATATGTAC
14042364 ATATAAGAAATATATATATGTA
1 ATATAA-AAATATATATATGTA
14042386 TGTGAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (22 bp):
ATATAAAAATATATATATGTAC
Found at i:14042871 original size:23 final size:23
Alignment explanation
Indices: 14042845--14042889 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14042835 AAGAGATTTG
* *
14042845 AAATCAACAATATACAAATCAAT
1 AAATAAACAATACACAAATCAAT
**
14042868 AAATAAATTATACACAAATCAA
1 AAATAAACAATACACAAATCAA
14042890 CAAAATAAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATAAACAATACACAAATCAAT
Found at i:14043137 original size:19 final size:20
Alignment explanation
Indices: 14043091--14043147 Score: 89
Period size: 22 Copynumber: 2.8 Consensus size: 20
14043081 AAATTAAATC
14043091 TCTAAGATTGCATATCATATCT
1 TCTAAGATTGCATATCATA--T
14043113 TCTAAGATTGCATATCATA-
1 TCTAAGATTGCATATCATAT
14043132 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
14043148 CTTGAAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 16 0.46
22 19 0.54
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
TCTAAGATTGCATATCATAT
Found at i:14043720 original size:52 final size:51
Alignment explanation
Indices: 14043556--14043713 Score: 198
Period size: 51 Copynumber: 3.0 Consensus size: 51
14043546 ATTCAAATAA
*
14043556 ATATATAAAAATACATAAATATTTTTCAAAAAATATAATAATAAATTT-AAT
1 ATATATAAAAATAAATAAATA-TTTTCAAAAAATATAATAATAAATTTAAAT
14043607 ATATATAAATAA-AAAT-AATATTGTTGACAAAAAATAGTAATATATAAAATTTAAA-
1 ATATATAAA-AATAAATAAATATT-TT--CAAAAAATA-TAATA-AT-AAATTTAAAT
14043662 ACTATATAAAAATAAATAAATATTTTCAAAAAATATAATAATAAATTTAAAT
1 A-TATATAAAAATAAATAAATATTTTCAAAAAATATAATAATAAATTTAAAT
14043714 TTTATATTAA
Statistics
Matches: 94, Mismatches: 1, Indels: 23
0.80 0.01 0.19
Matches are distributed among these distances:
49 2 0.02
50 6 0.06
51 21 0.22
52 13 0.14
53 10 0.11
54 11 0.12
55 9 0.10
56 16 0.17
57 6 0.06
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (51 bp):
ATATATAAAAATAAATAAATATTTTCAAAAAATATAATAATAAATTTAAAT
Found at i:14047737 original size:67 final size:67
Alignment explanation
Indices: 14047629--14047765 Score: 247
Period size: 67 Copynumber: 2.0 Consensus size: 67
14047619 ACTTTCGGCA
* *
14047629 TCTTCATCACAATAGCTACTCAACTCCCACACCGAAGTCGCAACGATAACTAGAAATCATCCGCG
1 TCTTCATCACAATAACTACTCAACTCCCACACCGAAGTCGCAACGATAACTAGAAATCATCCACG
14047694 CT
66 CT
*
14047696 TCTTCATCACAATAACTACTCAACTCCCACACTGAAGTCGCAACGATAACTAGAAATCATCCACG
1 TCTTCATCACAATAACTACTCAACTCCCACACCGAAGTCGCAACGATAACTAGAAATCATCCACG
14047761 CT
66 CT
14047763 TCT
1 TCT
14047766 AAAACTTTGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.34, C:0.34, G:0.10, T:0.23
Consensus pattern (67 bp):
TCTTCATCACAATAACTACTCAACTCCCACACCGAAGTCGCAACGATAACTAGAAATCATCCACG
CT
Found at i:14056203 original size:26 final size:26
Alignment explanation
Indices: 14056167--14056219 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14056157 CTTTCTAAAT
*
14056167 TCCTACTTACACTACAATAATTTTTA
1 TCCTACTTACACCACAATAATTTTTA
* *
14056193 TCCTATTTACACCATAATAATTTTTA
1 TCCTACTTACACCACAATAATTTTTA
14056219 T
1 T
14056220 AATCTTTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (26 bp):
TCCTACTTACACCACAATAATTTTTA
Found at i:14066539 original size:41 final size:41
Alignment explanation
Indices: 14066482--14066720 Score: 279
Period size: 41 Copynumber: 5.8 Consensus size: 41
14066472 GAATATAATA
* * * *
14066482 CAGACGTTACGTCTAGCAGGCTTATTGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTG-A-TACATTT
14066523 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
*
14066564 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
* * *
14066605 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
* * * *
14066646 CAGACTATATGTCTAGCAGGCTAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACAT--TT
* * *
14066687 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGA
14066721 ATCTGTTTAA
Statistics
Matches: 177, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 5 0.03
41 169 0.95
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
Found at i:14066703 original size:123 final size:123
Alignment explanation
Indices: 14066492--14066720 Score: 313
Period size: 123 Copynumber: 1.9 Consensus size: 123
14066482 CAGACGTTAC
* *
14066492 GTCTAGCAGGCTTATTGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGA
* * **
14066557 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
66 TACATATCAGACTTTAAGCCTAGCAGGCAAAATGCCGGTGATACATTTCAGACTATAT
* *
14066615 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTATATGTCTAGCAGGCTAAGTGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTATAAGTCTAGCAGGCTAAATGCCGGT
*
14066678 G-TAC-TGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
64 GATACAT--ATCAGACTTTAAGCCTAGCAGGCAAAATGCCGGTGA
14066721 ATCTGTTTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
121 3 0.03
122 5 0.05
123 85 0.91
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGA
TACATATCAGACTTTAAGCCTAGCAGGCAAAATGCCGGTGATACATTTCAGACTATAT
Found at i:14079422 original size:20 final size:21
Alignment explanation
Indices: 14079383--14079423 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14079373 GAAGATGAAC
**
14079383 TTGAGAGAATTTAATTAATTT
1 TTGAGAGAATTTAACAAATTT
14079404 TTGAGAGAA-TTAACAAATTT
1 TTGAGAGAATTTAACAAATTT
14079424 GATAGAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (21 bp):
TTGAGAGAATTTAACAAATTT
Found at i:14080225 original size:28 final size:30
Alignment explanation
Indices: 14080165--14080241 Score: 104
Period size: 28 Copynumber: 2.6 Consensus size: 30
14080155 ATCAAAAAAA
* *
14080165 TTTTCTTCTCTCAATTTCTCCTAACATCAT
1 TTTTCTTCTCTCATTTTCTCCCAACATCAT
*
14080195 TTTTCTTCTCCCATTTTC-CCCAACAT-AT
1 TTTTCTTCTCTCATTTTCTCCCAACATCAT
*
14080223 TTTTCTCCTCTCATTTTCT
1 TTTTCTTCTCTCATTTTCT
14080242 TTCCAACACT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 18 0.44
29 7 0.17
30 16 0.39
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTTCTTCTCTCATTTTCTCCCAACATCAT
Found at i:14081829 original size:17 final size:17
Alignment explanation
Indices: 14081788--14081829 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
14081778 CATTATTTAT
14081788 GAAA-ATTATAAGTTGA
1 GAAAGATTATAAGTTGA
*
14081804 -TAAGAATTATAAGTTGA
1 GAAAG-ATTATAAGTTGA
14081821 GAAAGATTA
1 GAAAGATTA
14081830 ATTTTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
15 2 0.10
17 16 0.76
18 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (17 bp):
GAAAGATTATAAGTTGA
Found at i:14086386 original size:30 final size:32
Alignment explanation
Indices: 14086347--14086412 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 32
14086337 AACTCCTAAA
14086347 CCTCTTCACTTTC-CTCCCAAAACTTTTACTC-
1 CCTCTTCACTTTCTC-CCCAAAACTTTTACTCT
* *
14086378 CCTC-TCACTTTCTCCCCATAACTTTTGCTCT
1 CCTCTTCACTTTCTCCCCAAAACTTTTACTCT
14086409 CCTC
1 CCTC
14086413 CCATCACACC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.15, C:0.44, G:0.02, T:0.39
Consensus pattern (32 bp):
CCTCTTCACTTTCTCCCCAAAACTTTTACTCT
Found at i:14086916 original size:19 final size:19
Alignment explanation
Indices: 14086892--14086929 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14086882 AAAGTTAATA
14086892 ACAAATTTGATTACGGTGG
1 ACAAATTTGATTACGGTGG
*
14086911 ACAAATTTGATTATGGTGG
1 ACAAATTTGATTACGGTGG
14086930 GTGACAGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (19 bp):
ACAAATTTGATTACGGTGG
Found at i:14088463 original size:84 final size:84
Alignment explanation
Indices: 14088318--14088475 Score: 214
Period size: 84 Copynumber: 1.9 Consensus size: 84
14088308 ATATGTGTTA
* * * *
14088318 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGACTTGTGTTTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGAAGTTGGCATCGACTTGTGATTACATGTAAGACCACGTCTGGGA
14088383 CATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
*
14088402 TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATTGA-TATGTGATTACATGTAAGACCACGTCTG
1 TCGTGTAAGACCAC-GTCTGGGA-AGTTGGCATCGACT-TGTGATTACATGTAAGACCACGTCTG
*
14088464 GGACGTTGGCAT
63 GGACATTGGCAT
14088476 TATACGAGTC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
83 2 0.03
84 62 0.95
85 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGAAGTTGGCATCGACTTGTGATTACATGTAAGACCACGTCTGGGA
CATTGGCATCGTATTTGAT
Found at i:14088476 original size:43 final size:43
Alignment explanation
Indices: 14088306--14088475 Score: 199
Period size: 43 Copynumber: 4.0 Consensus size: 43
14088296 ATAGGATTTC
*
14088306 CGATATGTG-TTATCGTGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
14088349 CGACT-TGTGTTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGA-TATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
*
14088392 CG-TATTTGATT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
14088433 TGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
14088476 TATACGAGTC
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
41 28 0.26
42 14 0.13
43 61 0.56
44 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:14088664 original size:16 final size:17
Alignment explanation
Indices: 14088635--14088666 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14088625 TGAATTGATG
14088635 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
14088652 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
14088667 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:14092690 original size:13 final size:13
Alignment explanation
Indices: 14092672--14092705 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14092662 AATAAAAAAA
* *
14092672 TTATAACTTTTTT
1 TTATAAATTTTGT
14092685 TTATAAATTTTGT
1 TTATAAATTTTGT
14092698 TTATAAAT
1 TTATAAAT
14092706 ATTTAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (13 bp):
TTATAAATTTTGT
Found at i:14101687 original size:23 final size:22
Alignment explanation
Indices: 14101664--14101705 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14101654 TTTATAACTA
14101664 AAAAAAT-TAATAAAAAATTTCT
1 AAAAAATAT-ATAAAAAATTTCT
*
14101686 AAAGAATATATAAAAAATTT
1 AAAAAATATATAAAAAATTT
14101706 AAAAAGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAAAATATATAAAAAATTTCT
Found at i:14106153 original size:26 final size:29
Alignment explanation
Indices: 14106122--14106185 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 29
14106112 TTTTCTCATG
14106122 TTTATATATATACATA-TATTT-ATT-TT
1 TTTATATATATACATATTATTTAATTATT
* *
14106148 TTTATA-ATGTAGATATTATTTAATTATT
1 TTTATATATATACATATTATTTAATTATT
14106176 TTTA-ATATAT
1 TTTATATATAT
14106186 TTTACGTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 7 0.23
26 11 0.35
27 4 0.13
28 9 0.29
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTATATATATACATATTATTTAATTATT
Found at i:14109006 original size:20 final size:20
Alignment explanation
Indices: 14108983--14109031 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
14108973 AATCAAGTGG
14108983 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
14109003 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
14109023 AAATGATTT
1 AAATGATTT
14109032 CAATCATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:14112670 original size:45 final size:45
Alignment explanation
Indices: 14112619--14112752 Score: 187
Period size: 45 Copynumber: 3.0 Consensus size: 45
14112609 ACAGATACAC
* * *
14112619 GGTGGAATCAGCACATAACAACCACCTTCATAATCAATGGTACCT
1 GGTGGAATCAGCACACAACAACCACCTTTATAATCAATGGTACCA
* ** *
14112664 GGTGGAATCAACACACAACAGTCACCTTTATAATCAATGATACCA
1 GGTGGAATCAGCACACAACAACCACCTTTATAATCAATGGTACCA
* *
14112709 GGAGGAATCAGCACACAATAACCACCTTTATAATCAATGGTACC
1 GGTGGAATCAGCACACAACAACCACCTTTATAATCAATGGTACC
14112753 CGGTACACGT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.22
Consensus pattern (45 bp):
GGTGGAATCAGCACACAACAACCACCTTTATAATCAATGGTACCA
Found at i:14127998 original size:25 final size:25
Alignment explanation
Indices: 14127970--14128017 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14127960 TCATCGCTGC
*
14127970 TTCTTTGATCCTCTGCTGGTGCTAG
1 TTCTCTGATCCTCTGCTGGTGCTAG
* * *
14127995 TTCTCTGTTCTTCTGTTGGTGCT
1 TTCTCTGATCCTCTGCTGGTGCT
14128018 GGTGTTGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.04, C:0.23, G:0.23, T:0.50
Consensus pattern (25 bp):
TTCTCTGATCCTCTGCTGGTGCTAG
Found at i:14128047 original size:31 final size:31
Alignment explanation
Indices: 14127983--14128048 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
14127973 TTTGATCCTC
* **
14127983 TGCTGGTGCTAGTTCTCTGTTCTTCTGTTGG
1 TGCTGGTGCTAGTTCTCTGTTCCTCTGCGGG
* * *
14128014 TGCTGGTGTTGGTTCTTTGTTCCTCTGCGGG
1 TGCTGGTGCTAGTTCTCTGTTCCTCTGCGGG
14128045 TGCT
1 TGCT
14128049 TTGTTCCTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.02, C:0.20, G:0.32, T:0.47
Consensus pattern (31 bp):
TGCTGGTGCTAGTTCTCTGTTCCTCTGCGGG
Found at i:14129756 original size:44 final size:45
Alignment explanation
Indices: 14129673--14129771 Score: 168
Period size: 44 Copynumber: 2.2 Consensus size: 45
14129663 GCAATCTGAT
14129673 TTAGGTAAAAGAAGTGGGGAAAAAAGAAAAAGAAGAAGATAGCAA
1 TTAGGTAAAAGAAGTGGGGAAAAAAGAAAAAGAAGAAGATAGCAA
14129718 TTAGGTAAAAGAA--GGGGAGAAAAAGAAAAAGAAGAAGATAGCAA
1 TTAGGTAAAAGAAGTGGGGA-AAAAAGAAAAAGAAGAAGATAGCAA
14129762 -TAGGTAAAAG
1 TTAGGTAAAAG
14129772 GAGGAGGCGT
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
43 15 0.28
44 25 0.47
45 13 0.25
ACGTcount: A:0.58, C:0.02, G:0.29, T:0.11
Consensus pattern (45 bp):
TTAGGTAAAAGAAGTGGGGAAAAAAGAAAAAGAAGAAGATAGCAA
Found at i:14131648 original size:72 final size:72
Alignment explanation
Indices: 14131494--14131666 Score: 233
Period size: 72 Copynumber: 2.4 Consensus size: 72
14131484 AACAATAATG
* * * * *
14131494 CTAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
14131559 TTTATGT
66 TTTATGT
* * *
14131566 GT-AATCTAGTTTTATTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
14131630 ATTT-TTT
65 ATTTATGT
14131637 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAATAGTTGTTTAT
14131667 TTATATGTGA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
71 4 0.05
72 79 0.92
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.54
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:14133561 original size:10 final size:10
Alignment explanation
Indices: 14133546--14133575 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14133536 ATATATTAAA
14133546 AATAAGTTAT
1 AATAAGTTAT
14133556 AATAAGTTAT
1 AATAAGTTAT
*
14133566 AATAAATTAT
1 AATAAGTTAT
14133576 TTTTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (10 bp):
AATAAGTTAT
Found at i:14133741 original size:13 final size:13
Alignment explanation
Indices: 14133720--14133770 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
14133710 ACACTCAAAA
14133720 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
14133733 TTCTCAAAATCAC
1 TTTTCAAAAGCAC
* *
14133746 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
14133759 TTTTCAAAAGCA
1 TTTTCAAAAGCA
14133771 ATGAAAAACT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:14136929 original size:16 final size:16
Alignment explanation
Indices: 14136908--14136941 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14136898 TGTTGCAGAC
14136908 TCGAATATACATTTGT
1 TCGAATATACATTTGT
14136924 TCGAATATACATTTGT
1 TCGAATATACATTTGT
14136940 TC
1 TC
14136942 TGTATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (16 bp):
TCGAATATACATTTGT
Found at i:14137143 original size:246 final size:247
Alignment explanation
Indices: 14136696--14137165 Score: 710
Period size: 246 Copynumber: 1.9 Consensus size: 247
14136686 ATAGCTACAA
*
14136696 TATTTTTATAAATTCATACCGTTATCCTTGATTATAATTCATTATTAAATGTTGTTAATGATATT
1 TATTTTTATAAATTCATACCATTATCCTTGATTATAATTCATTATTAAATGTTGTTAATGATA-T
* * * *
14136761 TATATTTTTGAACTCGTGAAATGAAATTTGGTCTATGTGAAATGTATTGAATTTTGAAATAATTT
65 TATATATTTAAACTCGTGAAATGAAATTTGGTCTATGTGAAATATACTGAATTTTGAAATAATTT
* * * *
14136826 CGATGGATCGAGTAAAAGTTTCATACATGAGATTTCTGACTGATTTTTTGTTCTGGATCGAGCTC
130 CGATGGATCGAGTAAAAATTTCATACATGAGATTTCTGACTGATTTCTTATTCTAGATCGAGCTC
14136891 CAGCATTTGTTGCAGACTCGAATATACATTTGTTCGAATATACATTTGTTCTG
195 CAGCATTTGTTGCAGACTCGAATATACATTTGTTCGAATATACATTTGTTCTG
* * * *
14136944 TATTTTTGTAATTTCATACCATTATCCTTGATTATAATTCATTATTAATTTTTGTTAATGATA-T
1 TATTTTTATAAATTCATACCATTATCCTTGATTATAATTCATTATTAAATGTTGTTAATGATATT
14137008 ATATATTTAAACTAC-TGAAATGAAATTTGGTCTATGTGAAATATACTGAATTTTGAAATAATTT
66 ATATATTTAAACT-CGTGAAATGAAATTTGGTCTATGTGAAATATACTGAATTTTGAAATAATTT
* ** * * *
14137072 TGATGGATCGAGTAAAAATTTTGTACATGAGATTTTTGACTGATTTCTTATTCTAGATTGAGCTT
130 CGATGGATCGAGTAAAAATTTCATACATGAGATTTCTGACTGATTTCTTATTCTAGATCGAGCTC
** *
14137137 CAGCATTTGTTGTGGACTCGGATATACAT
195 CAGCATTTGTTGCAGACTCGAATATACAT
14137166 GTAACTCAAA
Statistics
Matches: 199, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
246 140 0.70
247 1 0.01
248 58 0.29
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.44
Consensus pattern (247 bp):
TATTTTTATAAATTCATACCATTATCCTTGATTATAATTCATTATTAAATGTTGTTAATGATATT
ATATATTTAAACTCGTGAAATGAAATTTGGTCTATGTGAAATATACTGAATTTTGAAATAATTTC
GATGGATCGAGTAAAAATTTCATACATGAGATTTCTGACTGATTTCTTATTCTAGATCGAGCTCC
AGCATTTGTTGCAGACTCGAATATACATTTGTTCGAATATACATTTGTTCTG
Found at i:14137558 original size:12 final size:12
Alignment explanation
Indices: 14137541--14137566 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14137531 ATGGAAATAA
14137541 TTATATGAAGTG
1 TTATATGAAGTG
14137553 TTATATGAAGTG
1 TTATATGAAGTG
14137565 TT
1 TT
14137567 TACATGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (12 bp):
TTATATGAAGTG
Found at i:14142416 original size:18 final size:18
Alignment explanation
Indices: 14142395--14142440 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
14142385 TGAGTTTTCG
* *
14142395 AATTCGAATAGCTCGAAT
1 AATTTGAATAACTCGAAT
*
14142413 AATTTGAATAATTCGAAT
1 AATTTGAATAACTCGAAT
14142431 AATTTGAATA
1 AATTTGAATA
14142441 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (18 bp):
AATTTGAATAACTCGAAT
Found at i:14142421 original size:9 final size:9
Alignment explanation
Indices: 14142409--14142440 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
14142399 CGAATAGCTC
14142409 GAATAATTT
1 GAATAATTT
*
14142418 GAATAATTC
1 GAATAATTT
14142427 GAATAATTT
1 GAATAATTT
14142436 GAATA
1 GAATA
14142441 TCAAACTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (9 bp):
GAATAATTT
Found at i:14142519 original size:23 final size:22
Alignment explanation
Indices: 14142476--14142520 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14142466 ACCCTAAACT
* *
14142476 CTCAAACCTTTTTACTTTTCCC
1 CTCAAAACTTTTTACTCTTCCC
14142498 CTCAAAACTTTTTACTCCTTCCC
1 CTCAAAACTTTTTACT-CTTCCC
14142521 ACTTTCCCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (22 bp):
CTCAAAACTTTTTACTCTTCCC
Found at i:14142690 original size:30 final size:31
Alignment explanation
Indices: 14142656--14142715 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14142646 AAACCTTTTA
*
14142656 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
14142686 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
14142716 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:14142997 original size:17 final size:17
Alignment explanation
Indices: 14142977--14143023 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
14142967 CACATTTTAT
14142977 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
14142994 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
14143012 A-TATTTATATTA
1 ATTATTTATATTA
14143024 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:14145770 original size:57 final size:57
Alignment explanation
Indices: 14145703--14145818 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
14145693 GACCAGATAA
14145703 AAGCACAAGGATCAAATCCATAACTTTTGCAAAGTACAGGGATTAATGACAAAAATT
1 AAGCACAAGGATCAAATCCATAACTTTTGCAAAGTACAGGGATTAATGACAAAAATT
14145760 AAGCACAAGGATCAAATCCATAACTTTTGCAAAGTACAGGGATTAATGACAAAAATT
1 AAGCACAAGGATCAAATCCATAACTTTTGCAAAGTACAGGGATTAATGACAAAAATT
14145817 AA
1 AA
14145819 CCTAATTTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.22
Consensus pattern (57 bp):
AAGCACAAGGATCAAATCCATAACTTTTGCAAAGTACAGGGATTAATGACAAAAATT
Found at i:14149079 original size:16 final size:16
Alignment explanation
Indices: 14149058--14149091 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14149048 TGGAGCCGAC
14149058 AAGTTAGAGGAACCAA
1 AAGTTAGAGGAACCAA
**
14149074 AAGTTAGATTAACCAA
1 AAGTTAGAGGAACCAA
14149090 AA
1 AA
14149092 AAAGAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (16 bp):
AAGTTAGAGGAACCAA
Found at i:14162052 original size:61 final size:62
Alignment explanation
Indices: 14161754--14162329 Score: 395
Period size: 61 Copynumber: 9.4 Consensus size: 62
14161744 ATCCAATGCT
* * ** * * *
14161754 CAAATAAATTCAGCAATATATATTCATATACGAA-CCAAATTCAGCAATGTAT-ATCTATATA
1 CAAATCAATTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAATGTATAATC-ATATA
** * ** * * *
14161815 CAAAAAAAATCAGCAATGTATAACCATATATGAA-TCTAGTTC-GAAAATGTATAATCATATA
1 CAAATCAATTCAGCAATGTATAACCATATACAAATTCAATTTCAG-CAATGTATAATCATATA
* * * *
14161876 CAAATTAAATTCAGCAATGTATAACCATATACGAA-TCGA-TTCGGCAACT-TAT-ATCCATATA
1 CAAA-TCAATTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAA-TGTATAAT-CATATA
* * * *
14161937 CAATTCAATTTCAACAATGTATAACCATGTACAAATT-AATTTCAGCAATATATAATCATATA
1 CAAATCAA-TTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAATGTATAATCATATA
* * * * *
14161999 CAAATCAATTCGGCAACT-TATATCCATATAC-AATTCAATTTCAACAATGTATAACCATGTA
1 CAAATCAATTCAGCAA-TGTATAACCATATACAAATTCAATTTCAGCAATGTATAATCATATA
* * * *
14162060 CAAATTAATTTCAGCAATATATAATCATATACAAA-TCAA-TTCGGCAACT-TAT-ATCCATATA
1 CAAATCAA-TTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAA-TGTATAAT-CATATA
* * * * *
14162121 CAATTCAATTTCAACAATTTATAACCATGTACAAATT-AATTTCAGCAATGTACAATCATATA
1 CAAATCAA-TTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAATGTATAATCATATA
* * * * * *
14162183 CAAATCAATTCGGTAACT-TATACCCATATGCAAA-TCAATTTC-GACAATGTATAACCATGTA
1 CAAATCAATTCAGCAA-TGTATAACCATATACAAATTCAATTTCAG-CAATGTATAATCATATA
* * * * ** *
14162244 CAAATTAATTTCAGCAATGTACAATCATATACAAA-TCAA-TTCGGCAACT-TATACCCATATG
1 CAAATCAA-TTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAA-TGTATAATCATATA
*
14162305 CAAATCAATTTCAACAATGTATAAC
1 CAAATCAA-TTCAGCAATGTATAAC
14162330 TATGAACAAT
Statistics
Matches: 415, Mismatches: 71, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
60 13 0.03
61 265 0.64
62 131 0.32
63 6 0.01
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (62 bp):
CAAATCAATTCAGCAATGTATAACCATATACAAATTCAATTTCAGCAATGTATAATCATATA
Found at i:14162217 original size:30 final size:30
Alignment explanation
Indices: 14161754--14162359 Score: 387
Period size: 31 Copynumber: 19.8 Consensus size: 30
14161744 ATCCAATGCT
* * * **
14161754 CAAATAAATTCAGCAATATATATTCATATA
1 CAAATCAATTCGGCAATGTATAACCATATA
* * * * *
14161784 CGAACCAAATTCAGCAATGTATATCTATATA
1 CAAATC-AATTCGGCAATGTATAACCATATA
** * *
14161815 CAAAAAAAATCAGCAATGTATAACCATATA
1 CAAATCAATTCGGCAATGTATAACCATATA
** * ** *
14161845 TGAATCTAGTTCGAAAATGTATAATCATATA
1 CAAATC-AATTCGGCAATGTATAACCATATA
* *
14161876 CAAATTAAATTCAGCAATGTATAACCATATA
1 CAAA-TCAATTCGGCAATGTATAACCATATA
* * *
14161907 CGAATCGATTCGGCAACT-TATATCCATATA
1 CAAATCAATTCGGCAA-TGTATAACCATATA
* ** *
14161937 CAATTCAATTTCAACAATGTATAACCATGTA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* * * *
14161968 CAAATTAATTTCAGCAATATATAATCATATA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
*
14161999 CAAATCAATTCGGCAACT-TATATCCATATA
1 CAAATCAATTCGGCAA-TGTATAACCATATA
* ** *
14162029 CAATTCAATTTCAACAATGTATAACCATGTA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* * * *
14162060 CAAATTAATTTCAGCAATATATAATCATATA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
*
14162091 CAAATCAATTCGGCAACT-TATATCCATATA
1 CAAATCAATTCGGCAA-TGTATAACCATATA
* ** * *
14162121 CAATTCAATTTCAACAATTTATAACCATGTA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* * * *
14162152 CAAATTAATTTCAGCAATGTACAATCATATA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* * *
14162183 CAAATCAATTCGGTAACT-TATACCCATATG
1 CAAATCAATTCGGCAA-TGTATAACCATATA
* *
14162213 CAAATCAATTTCGACAATGTATAACCATGTA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* * * *
14162244 CAAATTAATTTCAGCAATGTACAATCATATA
1 CAAATCAA-TTCGGCAATGTATAACCATATA
* *
14162275 CAAATCAATTCGGCAACT-TATACCCATATG
1 CAAATCAATTCGGCAA-TGTATAACCATATA
** *
14162305 CAAATCAATTTCAACAATGTATAACTATGA-A
1 CAAATCAA-TTCGGCAATGTATAACCAT-ATA
* *
14162336 CAATTCGAATTCGGCAATATATAA
1 CAAATC-AATTCGGCAATGTATAA
14162360 AACAATCAAA
Statistics
Matches: 444, Mismatches: 112, Indels: 39
0.75 0.19 0.07
Matches are distributed among these distances:
30 149 0.34
31 291 0.66
32 4 0.01
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATAACCATATA
Found at i:14162353 original size:92 final size:92
Alignment explanation
Indices: 14161860--14162338 Score: 769
Period size: 92 Copynumber: 5.2 Consensus size: 92
14161850 CTAGTTCGAA
* * * * * *
14161860 AATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACGAATCGATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
14161925 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
*
14161952 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
14162017 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
*
14162044 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
14162109 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
* * *
14162136 AATTTATAACCATGTACAAATTAATTTCAGCAATGTACAATCATATACAAATCAATTCGGTAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
* * * *
14162201 TATACCCATATGCAAATCAATTTCGAC
66 TATATCCATATACAATTCAATTTCAAC
*
14162228 AATGTATAACCATGTACAAATTAATTTCAGCAATGTACAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
* * *
14162293 TATACCCATATGCAAATCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
* *
14162320 AATGTATAACTATGAACAA
1 AATGTATAACCATGTACAA
14162339 TTCGAATTCG
Statistics
Matches: 367, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 367 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (92 bp):
AATGTATAACCATGTACAAATTAATTTCAGCAATGTATAATCATATACAAATCAATTCGGCAACT
TATATCCATATACAATTCAATTTCAAC
Found at i:14162373 original size:25 final size:26
Alignment explanation
Indices: 14162334--14162383 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
14162324 TATAACTATG
* *
14162334 AACAATTCGAATTCGGCAATATATAA
1 AACAATTCAAATTCGACAATATATAA
*
14162360 AACAA-TCAAATTCGACAATGTATA
1 AACAATTCAAATTCGACAATATATA
14162384 TCTATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (26 bp):
AACAATTCAAATTCGACAATATATAA
Found at i:14162378 original size:56 final size:55
Alignment explanation
Indices: 14162307--14162418 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 55
14162297 CCCATATGCA
* * *
14162307 AATCAATTTCAACAATGTATAACTATGAA-CAATTCGAATTCGGCAATATATAAAAC
1 AATCAAATTCAACAATGTATAACTAT-AATCAA-TCAAATTCAGCAATATATAAAAC
* * * *
14162363 AATCAAATTCGACAATGTATATCTATAATTAATCAAATTCAGCAATGTATAAAAC
1 AATCAAATTCAACAATGTATAACTATAATCAATCAAATTCAGCAATATATAAAAC
14162418 A
1 A
14162419 TATACATTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 23 0.48
56 25 0.52
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.29
Consensus pattern (55 bp):
AATCAAATTCAACAATGTATAACTATAATCAATCAAATTCAGCAATATATAAAAC
Found at i:14167765 original size:46 final size:46
Alignment explanation
Indices: 14167660--14167949 Score: 417
Period size: 46 Copynumber: 6.6 Consensus size: 46
14167650 TACGTATGAT
*
14167660 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14167703 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
14167749 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14167795 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14167841 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14167877 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
14167923 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14167950 AGTACTCAAA
Statistics
Matches: 224, Mismatches: 10, Indels: 23
0.87 0.04 0.09
Matches are distributed among these distances:
36 29 0.13
38 3 0.01
40 3 0.01
42 3 0.01
43 10 0.04
44 7 0.03
45 21 0.09
46 148 0.66
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:14167882 original size:36 final size:36
Alignment explanation
Indices: 14167841--14167913 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
14167831 CTAAAGCTAC
14167841 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
14167877 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
14167913 C
1 C
14167914 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:14167888 original size:82 final size:82
Alignment explanation
Indices: 14167795--14167949 Score: 283
Period size: 82 Copynumber: 1.9 Consensus size: 82
14167785 CTGAGGCTAC
*
14167795 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
14167860 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* *
14167877 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
14167942 TGATCAGA
66 TGATCAGA
14167950 AGTACTCAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
TGATCAGATAAGTATAG
Found at i:14169365 original size:17 final size:18
Alignment explanation
Indices: 14169324--14169368 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
14169314 CAATTAATCC
14169324 CTCAATTAATCTAATTTT
1 CTCAATTAATCTAATTTT
14169342 CTCAATTAATCTAA-TTT
1 CTCAATTAATCTAATTTT
*
14169359 CTTAATTAAT
1 CTCAATTAAT
14169369 ACTTTCCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.49
Consensus pattern (18 bp):
CTCAATTAATCTAATTTT
Found at i:14170063 original size:10 final size:10
Alignment explanation
Indices: 14170048--14170072 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14170038 TTAACACTCC
14170048 ATAAATATTT
1 ATAAATATTT
14170058 ATAAATATTT
1 ATAAATATTT
14170068 ATAAA
1 ATAAA
14170073 AATACTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAAATATTT
Found at i:14173999 original size:30 final size:30
Alignment explanation
Indices: 14173971--14174514 Score: 208
Period size: 31 Copynumber: 18.0 Consensus size: 30
14173961 AATATATATT
* *
14173971 CATATACGAACCAAATTCGCAATGTATATC
1 CATATACGAATCAAATTCGCAATGTATAAC
* * * *
14174001 TATATAC-AA-AAAAATCGATAATGTATAAC
1 CATATACGAATCAAATTCG-CAATGTATAAC
* * * *
14174030 CATATA-GAATCTAGTTCGAAATGTATAAT
1 CATATACGAATCAAATTCGCAATGTATAAC
* *
14174059 CATATACAAATTAAATTCAGCAATGTATAAC
1 CATATACGAATCAAATTC-GCAATGTATAAC
*
14174090 CATATACGAATC-AATTCGGCAACT-TATATC
1 CATATACGAATCAAATTC-GCAA-TGTATAAC
* *
14174120 CATATAC-AATTCAATTTC-AACATGTATAAC
1 CATATACGAA-TCAAATTCGCA-ATGTATAAC
* * * * * *
14174150 CATGTACAAATTAATTTCAGCAATATATAAT
1 CATATACGAATCAAATTC-GCAATGTATAAC
* *
14174181 CATATACAAATC-AATTCGGCAACT-TATATC
1 CATATACGAATCAAATTC-GCAA-TGTATAAC
* *
14174211 CATATAC-AATTCAATTTCAACAATGTATAAC
1 CATATACGAA-TCAAATTC-GCAATGTATAAC
* * * * * *
14174242 CATGTACAAATTAATTTCAGCAATATATAAT
1 CATATACGAATCAAATTC-GCAATGTATAAC
* *
14174273 CATATACAAATC-AATTCGGCAACT-TATATC
1 CATATACGAATCAAATTC-GCAA-TGTATAAC
* * *
14174303 CATATAC-AATTCAATTTCAACAATTTATAAC
1 CATATACGAA-TCAAATTC-GCAATGTATAAC
* * * * * *
14174334 CATGTACAAATTAATTTCAGCAATGTACAAT
1 CATATACGAATCAAATTC-GCAATGTATAAC
* * *
14174365 CATATACAAATC-AATTCGGTAACT-TATACC
1 CATATACGAATCAAATTC-GCAA-TGTATAAC
* * *
14174395 CATATGC-AATCAATTTC-AAATGTATAAC
1 CATATACGAATCAAATTCGCAATGTATAAC
* * * * * *
14174423 CATGTACAAATTAATTTCAGCAATGTACAAT
1 CATATACGAATCAAATTC-GCAATGTATAAC
* *
14174454 CATATACAAATC-AATTCGGCAACT-TATACC
1 CATATACGAATCAAATTC-GCAA-TGTATAAC
* * * *
14174484 CATATGCAAATCAATTTCAACAATGTATAAC
1 CATATACGAATCAAATTC-GCAATGTATAAC
14174515 TATGAACAAT
Statistics
Matches: 391, Mismatches: 91, Indels: 63
0.72 0.17 0.12
Matches are distributed among these distances:
27 1 0.00
28 18 0.05
29 54 0.14
30 146 0.37
31 167 0.43
32 5 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (30 bp):
CATATACGAATCAAATTCGCAATGTATAAC
Found at i:14174034 original size:29 final size:28
Alignment explanation
Indices: 14173983--14174096 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 28
14173973 TATACGAACC
* * *
14173983 AAATTCGCAATGTATATCTATATACAAA
1 AAATTCGAAATGTATAACCATATACAAA
* * *
14174011 AAAATCGATAATGTATAACCATATAGAATC
1 AAATTCGA-AATGTATAACCATATACAA-A
* * *
14174041 TAGTTCGAAATGTATAATCATATACAAA
1 AAATTCGAAATGTATAACCATATACAAA
*
14174069 TTAAATTCAGCAATGTATAACCATATAC
1 --AAATTC-GAAATGTATAACCATATAC
14174097 GAATCAATTC
Statistics
Matches: 65, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
28 6 0.09
29 33 0.51
30 9 0.14
31 17 0.26
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (28 bp):
AAATTCGAAATGTATAACCATATACAAA
Found at i:14174064 original size:58 final size:60
Alignment explanation
Indices: 14173971--14174101 Score: 153
Period size: 58 Copynumber: 2.2 Consensus size: 60
14173961 AATATATATT
* * * * *
14173971 CATATACGAACCAAATTCGCAATGTATATCTATATACAAA-AAAATC-GATAATGTATAAC
1 CATATACGAATCTAGTTCGAAATGTATATCTATATACAAATAAAATCAG-CAATGTATAAC
*
14174030 CATATA-GAATCTAGTTCGAAATGTATAATC-ATATACAAATTAAATTCAGCAATGTATAAC
1 CATATACGAATCTAGTTCGAAATGTAT-ATCTATATACAAA-TAAAATCAGCAATGTATAAC
14174090 CATATACGAATC
1 CATATACGAATC
14174102 AATTCGGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
58 25 0.41
59 9 0.15
60 21 0.34
61 6 0.10
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (60 bp):
CATATACGAATCTAGTTCGAAATGTATATCTATATACAAATAAAATCAGCAATGTATAAC
Found at i:14174185 original size:61 final size:61
Alignment explanation
Indices: 14174020--14174514 Score: 319
Period size: 61 Copynumber: 8.2 Consensus size: 61
14174010 AAAAATCGAT
* * * * *
14174020 AATGTATAACCATATA-GAATCT-AGTTC-GAAATGTATAATCATATACAAATT-AAATTCAGC
1 AATGTATAACCATATACAAAT-TAATTTCAGCAAT-TATAATCATATAC-AATTCAATTTCAAC
* * *
14174080 AATGTATAACCATATACGAATCAA-TTCGGCAACTTAT-ATCCATATACAATTCAATTTCAAC
1 AATGTATAACCATATACAAATTAATTTCAGCAA-TTATAAT-CATATACAATTCAATTTCAAC
* * **
14174141 -ATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAA-TTCGGC
1 AATGTATAACCATATACAAATTAATTTCAGCAAT-TATAATCATATACAATTCAATTTCAAC
* * * * *
14174201 AACT-TATATCCATATAC-AATTCAATTTCAACAATGTATAACCATGTACAAATT-AATTTCAGC
1 AA-TGTATAACCATATACAAATT-AATTTCAGCAAT-TATAATCATATAC-AATTCAATTTCAAC
* * * *
14174263 AATATATAATCATATACAAATCAA-TTCGGCAACTTAT-ATCCATATACAATTCAATTTCAAC
1 AATGTATAACCATATACAAATTAATTTCAGCAA-TTATAAT-CATATACAATTCAATTTCAAC
* * * * ***
14174324 AATTTATAACCATGTACAAATTAATTTCAGCAATGTACAATCATATACAAATCAA-TTCGGT
1 AATGTATAACCATATACAAATTAATTTCAGCAAT-TATAATCATATACAATTCAATTTCAAC
* * * * * *
14174385 AACT-TATACCCATATGC-AATCAATTTCA--AATGTATAACCATGTACAAATT-AATTTCAGC
1 AA-TGTATAACCATATACAAATTAATTTCAGCAAT-TATAATCATATAC-AATTCAATTTCAAC
* * * * ** * *
14174444 AATGTACAATCATATACAAATCAA-TTCGGCAACTTATACCCATATGCAAATCAATTTCAAC
1 AATGTATAACCATATACAAATTAATTTCAGCAA-TTATAATCATATACAATTCAATTTCAAC
14174505 AATGTATAAC
1 AATGTATAAC
14174515 TATGAACAAT
Statistics
Matches: 345, Mismatches: 59, Indels: 61
0.74 0.13 0.13
Matches are distributed among these distances:
58 17 0.05
59 21 0.06
60 78 0.23
61 172 0.50
62 52 0.15
63 5 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.32
Consensus pattern (61 bp):
AATGTATAACCATATACAAATTAATTTCAGCAATTATAATCATATACAATTCAATTTCAAC
Found at i:14174278 original size:92 final size:92
Alignment explanation
Indices: 14174049--14174544 Score: 752
Period size: 92 Copynumber: 5.4 Consensus size: 92
14174039 TCTAGTTCGA
* * * * * *
14174049 AATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACGAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
14174114 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
14174141 -ATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
14174205 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
14174232 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
14174297 TATATCCATATACAATTCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
* * * *
14174324 AATTTATAACCATGTACAAATTAATTTCAGCAATGTACAATCATATACAAATCAATTCGGTAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
* *
14174389 TATACCCATATGCAA-TCAATTTC-A-
66 TATATCCATATACAATTCAATTTCAAC
* *
14174413 AATGTATAACCATGTACAAATTAATTTCAGCAATGTACAATCATATACAAATCAATTCGGCAACT
1 AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
* * *
14174478 TATACCCATATGCAAATCAATTTCAAC
66 TATATCCATATACAATTCAATTTCAAC
* * *
14174505 AATGTATAACTATGAAC-AATTCGAA-TTCGGCAATATATAA
1 AATGTATAACCATGTACAAATT--AATTTCAGCAATATATAA
14174545 AACAATCAAA
Statistics
Matches: 379, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
89 78 0.21
90 9 0.02
91 98 0.26
92 192 0.51
93 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.32
Consensus pattern (92 bp):
AATGTATAACCATGTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGCAACT
TATATCCATATACAATTCAATTTCAAC
Found at i:14174558 original size:25 final size:26
Alignment explanation
Indices: 14174519--14174568 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
14174509 TATAACTATG
* *
14174519 AACAATTCGAATTCGGCAATATATAA
1 AACAATTCAAATTCGACAATATATAA
*
14174545 AACAA-TCAAATTCGACAATGTATA
1 AACAATTCAAATTCGACAATATATA
14174569 TCTATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.26
Consensus pattern (26 bp):
AACAATTCAAATTCGACAATATATAA
Found at i:14179908 original size:46 final size:46
Alignment explanation
Indices: 14179803--14180092 Score: 417
Period size: 46 Copynumber: 6.6 Consensus size: 46
14179793 TACGTATGAT
*
14179803 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14179846 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
14179892 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14179938 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14179984 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14180020 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
14180066 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14180093 AGTACTCAAA
Statistics
Matches: 224, Mismatches: 10, Indels: 23
0.87 0.04 0.09
Matches are distributed among these distances:
36 29 0.13
38 3 0.01
40 3 0.01
42 3 0.01
43 10 0.04
44 7 0.03
45 21 0.09
46 148 0.66
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:14180025 original size:36 final size:36
Alignment explanation
Indices: 14179984--14180056 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
14179974 CTAAAGCTAC
14179984 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
14180020 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
14180056 C
1 C
14180057 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:14180031 original size:82 final size:82
Alignment explanation
Indices: 14179938--14180092 Score: 283
Period size: 82 Copynumber: 1.9 Consensus size: 82
14179928 CTGAGGCTAC
*
14179938 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
14180003 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* *
14180020 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
14180085 TGATCAGA
66 TGATCAGA
14180093 AGTACTCAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
TGATCAGATAAGTATAG
Found at i:14181493 original size:18 final size:18
Alignment explanation
Indices: 14181470--14181515 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
14181460 CAATTAATCC
14181470 CTCAATTAATCTAATTTT
1 CTCAATTAATCTAATTTT
14181488 CTCAATTAATCTAATTTT
1 CTCAATTAATCTAATTTT
*
14181506 CTTAATTAAT
1 CTCAATTAAT
14181516 ACTTTCCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCAATTAATCTAATTTT
Found at i:14182211 original size:10 final size:10
Alignment explanation
Indices: 14182196--14182220 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14182186 TTAACACTCC
14182196 ATAAATATTT
1 ATAAATATTT
14182206 ATAAATATTT
1 ATAAATATTT
14182216 ATAAA
1 ATAAA
14182221 AATACTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAAATATTT
Found at i:14186169 original size:31 final size:31
Alignment explanation
Indices: 14186146--14186759 Score: 279
Period size: 31 Copynumber: 20.0 Consensus size: 31
14186136 AATATATATT
* *
14186146 CATATACGAACCAAATTCGGCAATGTATATC
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * * **
14186177 TATATACAAAT-AAAATCGATAATGTATAAC
1 CATATACGAATCAAATTCGGCAATGTATAAC
* *
14186207 CATATACGAATCAAGTTCGGCAATGTATAAT
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * *
14186238 CATATACAAATTAAATTCAGCAATGTATAAC
1 CATATACGAATCAAATTCGGCAATGTATAAC
*
14186269 CATATACGAATC-AATTCGGCAACT-TATATC
1 CATATACGAATCAAATTCGGCAA-TGTATAAC
* ** *
14186299 CATATAC-AATTCAATTTCAACAGTGTATAAC
1 CATATACGAA-TCAAATTCGGCAATGTATAAC
* * * * * * *
14186330 CATTTACAAATTAATTTCAGCAATATATAAT
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * *
14186361 CATATACAAATC-AATTCGGTAACT-TATATC
1 CATATACGAATCAAATTCGGCAA-TGTATAAC
* **
14186391 CATATAC-AATTCAATTTCAACAATGTATAAC
1 CATATACGAA-TCAAATTCGGCAATGTATAAC
* * * * * * *
14186422 CATGTACAAATTAATTTCAGCAATTTATATC
1 CATATACGAATCAAATTCGGCAATGTATAAC
* **
14186453 CATATAC-AATTCAATTTCAACAATGTATAAC
1 CATATACGAA-TCAAATTCGGCAATGTATAAC
* * * * * * *
14186484 CATGTACAAATTAATTTCAGCAATATATAAT
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * *
14186515 CATATACAAATC-AATTCGACAACT-TATATC
1 CATATACGAATCAAATTCGGCAA-TGTATAAC
* ***
14186545 CATATAC-AATTCAAGTTCAATAATGTATAAC
1 CATATACGAA-TCAAATTCGGCAATGTATAAC
* * * * * *
14186576 CATGTACAAATTAAATTCAGCAATATATAAT
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * *
14186607 CATATACAAATC-AATTCGACAACT-TATATC
1 CATATACGAATCAAATTCGGCAA-TGTATAAC
* * ***
14186637 CATATAC-AATTTAATTTCAAAAATGTATAAC
1 CATATACGAA-TCAAATTCGGCAATGTATAAC
* * * * * * *
14186668 CATGTACAAATTAATTTCAGCAATGTACAAT
1 CATATACGAATCAAATTCGGCAATGTATAAC
* * *
14186699 CATATACAAATC-AATTAGGCAACT-TATATC
1 CATATACGAATCAAATTCGGCAA-TGTATAAC
* * * * *
14186729 TATATGCAAATCAATTTCGACAATGTATAAC
1 CATATACGAATCAAATTCGGCAATGTATAAC
14186760 TATAAACAAT
Statistics
Matches: 448, Mismatches: 109, Indels: 52
0.74 0.18 0.09
Matches are distributed among these distances:
29 8 0.02
30 134 0.30
31 296 0.66
32 10 0.02
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (31 bp):
CATATACGAATCAAATTCGGCAATGTATAAC
Found at i:14186226 original size:61 final size:60
Alignment explanation
Indices: 14186146--14186739 Score: 282
Period size: 61 Copynumber: 9.7 Consensus size: 60
14186136 AATATATATT
* *
14186146 CATATACGAACCAAATTCGGCAATGTATATCTATATACAAA-TAAAATC-GATAATGTATAAC
1 CATATACGAATC-AATTCGGCAATGTATATC-ATATACAAATTAAAATCAG-CAATGTATAAC
*
14186207 CATATACGAATCAAGTTCGGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAAC
1 CATATACGAATCAA-TTCGGCAATGTAT-ATCATATACAAATTAAAATCAGCAATGTATAAC
** * *
14186269 CATATACGAATCAATTCGGCAACT-TATATCCATATAC-AATTCAATTTCAACAGTGTATAAC
1 CATATACGAATCAATTCGGCAA-TGTATAT-CATATACAAATT-AAAATCAGCAATGTATAAC
* * * * * * * * * *
14186330 CATTTACAAATTAATTTCAGCAATATATAATCATATACAAA-TCAATTCGGTAACT-TATATC
1 CATATACGAATCAA-TTCGGCAATGTAT-ATCATATACAAATTAAAATCAGCAA-TGTATAAC
** * * ** * *
14186391 CATATAC-AATTCAATTTCAACAATGTATAACCATGTACAAATTAATTTCAGCAATTTATATC
1 CATATACGAA-TCAA-TTCGGCAATGTAT-ATCATATACAAATTAAAATCAGCAATGTATAAC
** * * ** * *
14186453 CATATAC-AATTCAATTTCAACAATGTATAACCATGTACAAATTAATTTCAGCAATATATAAT
1 CATATACGAA-TCAA-TTCGGCAATGTAT-ATCATATACAAATTAAAATCAGCAATGTATAAC
* * ** **
14186515 CATATACAAATCAATTCGACAACT-TATATCCATATAC-AATTCAAGTTCAATAATGTATAAC
1 CATATACGAATCAATTCGGCAA-TGTATAT-CATATACAAATT-AAAATCAGCAATGTATAAC
* * * * * * * *
14186576 CATGTACAAATTAAATTCAGCAATATATAATCATATACAAA-TCAATTC-GACAACT-TATATC
1 CATATACGAA-TCAATTCGGCAATGTAT-ATCATATACAAATTAAAATCAG-CAA-TGTATAAC
* *** * * ** * *
14186637 CATATAC-AATTTAATTTCAAAAATGTATAACCATGTACAAATTAATTTCAGCAATGTACAAT
1 CATATACGAA-TCAA-TTCGGCAATGTAT-ATCATATACAAATTAAAATCAGCAATGTATAAC
* * *
14186699 CATATACAAATCAATTAGGCAACT-TATATCTATATGCAAAT
1 CATATACGAATCAATTCGGCAA-TGTATATC-ATATACAAAT
14186740 CAATTTCGAC
Statistics
Matches: 434, Mismatches: 67, Indels: 64
0.77 0.12 0.11
Matches are distributed among these distances:
60 23 0.05
61 216 0.50
62 181 0.42
63 14 0.03
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (60 bp):
CATATACGAATCAATTCGGCAATGTATATCATATACAAATTAAAATCAGCAATGTATAAC
Found at i:14186302 original size:92 final size:92
Alignment explanation
Indices: 14186133--14186789 Score: 509
Period size: 92 Copynumber: 7.1 Consensus size: 92
14186123 AAATCAATTA
* * * ** * * * * * *
14186133 AGCAATATATATTCATATACGAACCAAATTCGGCAATGTATATCTATATACAAATAAAATCGATA
1 AGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACAAATCAATTCGACA
*
14186198 ATGTATAACCATATACGAA-TCAAGTTC
66 ATGTATAACCATATAC-AATTCAATTTC
* * *
14186225 GGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACGAATCAATTCGGCA
1 AGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACAAATCAATTCGACA
*
14186290 ACT-TATATCCATATACAATTCAATTTC
66 A-TGTATAACCATATACAATTCAATTTC
* * * * * * * **
14186317 AACAGTGTATAACCATTTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGTA
1 AGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACAAATCAATTCGACA
*
14186382 ACT-TATATCCATATACAATTCAATTTC
66 A-TGTATAACCATATACAATTCAATTTC
* * * * * * * *
14186409 AACAATGTATAACCATGTACAAATTAATTTCAGCAATTTATATCCATATACAATTCAATTTCAAC
1 AGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACAAATCAA-TTCGAC
*
14186474 AATGTATAACCATGTACAAATT-AATTTC
65 AATGTATAACCATATAC-AATTCAATTTC
* * * * *
14186502 AGCAATATATAATCATATACAAA-TCAATTC-GACAACT-TATATCCATATACAATTCAAGTTCA
1 AGCAATGTATAATCATATACAAATTAAATTCAG-CAA-TGTATAACCATATACAAATCAA-TTCG
* * *
14186564 ATAATGTATAACCATGTACAAATT-AAATTC
63 ACAATGTATAACCATATAC-AATTCAATTTC
* * * * * *
14186594 AGCAATATATAATCATATACAAA-TCAATTC-GACAACT-TATATCCATATACAATTTAATTTCA
1 AGCAATGTATAATCATATACAAATTAAATTCAG-CAA-TGTATAACCATATACAAATCAA-TTCG
* *
14186656 AAAATGTATAACCATGTACAAATT-AATTTC
63 ACAATGTATAACCATATAC-AATTCAATTTC
* * * * *
14186686 AGCAATGTACAATCATATACAAA-TCAATT-AGGCAACT-TATATCTATATGCAAATCAATTTCG
1 AGCAATGTATAATCATATACAAATTAAATTCA-GCAA-TGTATAACCATATACAAATCAA-TTCG
* *
14186748 ACAATGTATAACTATAAACAATTCGAA-TTC
63 ACAATGTATAACCATATACAATTC-AATTTC
* *
14186778 AGAAATATATAA
1 AGCAATGTATAA
14186790 AACAATCAAA
Statistics
Matches: 490, Mismatches: 64, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
91 7 0.01
92 433 0.88
93 46 0.09
94 4 0.01
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (92 bp):
AGCAATGTATAATCATATACAAATTAAATTCAGCAATGTATAACCATATACAAATCAATTCGACA
ATGTATAACCATATACAATTCAATTTC
Found at i:14186555 original size:246 final size:245
Alignment explanation
Indices: 14186197--14186714 Score: 795
Period size: 246 Copynumber: 2.1 Consensus size: 245
14186187 TAAAATCGAT
* * ** *
14186197 AATGTATAACCATATACGAATCAAGTTCGGCAATGTATAATCATATACAAATTAAATTCAGCAAT
1 AATGTATATCCATATAC-AATCAATTTCAACAATGTATAACCATATACAAATTAAATTCAGCAAT
* * * * *
14186262 GTATAACCATATACGAATCAATTCGGCAACTTATATCCATATACAATTCAATTTCAACAGTGTAT
65 ATATAACCATATACAAATCAATTCGACAACTTATATCCATATACAATTCAAGTTCAACAATGTAT
* * **
14186327 AACCATTTACAAATTAATTTCAGCAATATATAATCATATACAAATCAATTCGGTAACTTATATCC
130 AACCATGTACAAATTAAATTCAGCAATATATAATCATATACAAATCAATTCGACAACTTATATCC
*
14186392 ATATACAATTCAATTTCAACAATGTATAACCATGTACAAATTAATTTCAGC
195 ATATACAATTCAATTTCAAAAATGTATAACCATGTACAAATTAATTTCAGC
* * *
14186443 AATTTATATCCATATACAATTCAATTTCAACAATGTATAACCATGTACAAATTAATTTCAGCAAT
1 AATGTATATCCATATACAA-TCAATTTCAACAATGTATAACCATATACAAATTAAATTCAGCAAT
* *
14186508 ATATAATCATATACAAATCAATTCGACAACTTATATCCATATACAATTCAAGTTCAATAATGTAT
65 ATATAACCATATACAAATCAATTCGACAACTTATATCCATATACAATTCAAGTTCAACAATGTAT
14186573 AACCATGTACAAATTAAATTCAGCAATATATAATCATATACAAATCAATTCGACAACTTATATCC
130 AACCATGTACAAATTAAATTCAGCAATATATAATCATATACAAATCAATTCGACAACTTATATCC
*
14186638 ATATACAATTTAATTTCAAAAATGTATAACCATGTACAAATTAATTTCAGC
195 ATATACAATTCAATTTCAAAAATGTATAACCATGTACAAATTAATTTCAGC
*
14186689 AATGTACAAT-CATATACAAATCAATT
1 AATGTA-TATCCATATAC-AATCAATT
14186715 AGGCAACTTA
Statistics
Matches: 246, Mismatches: 23, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
245 2 0.01
246 240 0.98
247 4 0.02
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (245 bp):
AATGTATATCCATATACAATCAATTTCAACAATGTATAACCATATACAAATTAAATTCAGCAATA
TATAACCATATACAAATCAATTCGACAACTTATATCCATATACAATTCAAGTTCAACAATGTATA
ACCATGTACAAATTAAATTCAGCAATATATAATCATATACAAATCAATTCGACAACTTATATCCA
TATACAATTCAATTTCAAAAATGTATAACCATGTACAAATTAATTTCAGC
Found at i:14186809 original size:56 final size:55
Alignment explanation
Indices: 14186737--14186848 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 55
14186727 TCTATATGCA
* * *
14186737 AATCAATTTCGACAATGTATAACTATAAACAATTCGAATTCAGAAATATATAAAAC
1 AATCAAATTCGACAATGTATAACTATAAACAA-TCAAATTCAAAAATATATAAAAC
* * ** *
14186793 AATCAAATTCGGCAATGTATATCTATAATTAATCAAATTCAAAAATGTATAAAAC
1 AATCAAATTCGACAATGTATAACTATAAACAATCAAATTCAAAAATATATAAAAC
14186848 A
1 A
14186849 TATACATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
55 21 0.44
56 27 0.56
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.29
Consensus pattern (55 bp):
AATCAAATTCGACAATGTATAACTATAAACAATCAAATTCAAAAATATATAAAAC
Found at i:14198013 original size:26 final size:26
Alignment explanation
Indices: 14197979--14198045 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
14197969 TTAGTCTAGC
*
14197979 AATACTTTTGAAAAGT-GTTGTGAAAA
1 AATACTTTTGAAAAATAGTTGTG-AAA
* * *
14198005 AATATTTTTGAAAAATATTTTTGAAA
1 AATACTTTTGAAAAATAGTTGTGAAA
14198031 AATACTTTTGAAAAA
1 AATACTTTTGAAAAA
14198046 GTTTGGTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 31 0.89
27 4 0.11
ACGTcount: A:0.46, C:0.03, G:0.12, T:0.39
Consensus pattern (26 bp):
AATACTTTTGAAAAATAGTTGTGAAA
Found at i:14198018 original size:13 final size:13
Alignment explanation
Indices: 14198002--14198045 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
14197992 AGTGTTGTGA
14198002 AAAAATATTTTTG
1 AAAAATATTTTTG
14198015 AAAAATATTTTTG
1 AAAAATATTTTTG
*
14198028 AAAAATACTTTTG
1 AAAAATATTTTTG
14198041 AAAAA
1 AAAAA
14198046 GTTTGGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (13 bp):
AAAAATATTTTTG
Found at i:14198274 original size:30 final size:31
Alignment explanation
Indices: 14198223--14198333 Score: 92
Period size: 33 Copynumber: 3.5 Consensus size: 31
14198213 AACTTATTGA
14198223 AAATA-TTTT-AATATATGAAATATAAATTTT
1 AAATATTTTTAAATATAT-AAATATAAATTTT
14198253 AAATATTTTTAAATA-ATAAATATTAATTATTTGT
1 AAATATTTTTAAATATATAAATA-TAA--ATTT-T
*
14198287 AAA-ATTTAATTAGAATATATAAAT-TATATTTT
1 AAATATTT--TTA-AATATATAAATATAAATTTT
14198319 AAATA--TTTAAATATA
1 AAATATTTTTAAATATA
14198334 ATCATTAAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 24
0.73 0.01 0.26
Matches are distributed among these distances:
28 6 0.09
29 3 0.04
30 10 0.14
31 10 0.14
32 8 0.12
33 13 0.19
34 4 0.06
35 5 0.07
36 4 0.06
37 6 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (31 bp):
AAATATTTTTAAATATATAAATATAAATTTT
Found at i:14198278 original size:24 final size:23
Alignment explanation
Indices: 14198223--14198289 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 23
14198213 AACTTATTGA
* *
14198223 AAATATTTTAATATATG-AAATAT
1 AAATA-TTAAATATTTGTAAATAT
* *
14198246 AAATTTTAAATATTTTTAAATAAT
1 AAATATTAAATATTTGTAAAT-AT
*
14198270 AAATATTAATTATTTGTAAA
1 AAATATTAAATATTTGTAAA
14198290 ATTTAATTAG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
22 8 0.23
23 8 0.23
24 19 0.54
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (23 bp):
AAATATTAAATATTTGTAAATAT
Found at i:14198343 original size:33 final size:32
Alignment explanation
Indices: 14198248--14198343 Score: 90
Period size: 33 Copynumber: 2.9 Consensus size: 32
14198238 TGAAATATAA
14198248 ATTTTAAATATTTTTAAATAATAAATATT-AATTAT
1 ATTTTAAATA--TTTAAAT-AT-AATATTAAATTAT
* * *
14198283 -TTGTAAA-ATTTAATTAGAATATATAAATTAT
1 ATTTTAAATATTTAAATATAATAT-TAAATTAT
14198314 ATTTTAAATATTTAAATATAATCATTAAAT
1 ATTTTAAATATTTAAATATAAT-ATTAAAT
14198344 ATTTATAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
29 5 0.10
30 2 0.04
31 12 0.24
32 6 0.12
33 17 0.34
34 8 0.16
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (32 bp):
ATTTTAAATATTTAAATATAATATTAAATTAT
Found at i:14198361 original size:21 final size:19
Alignment explanation
Indices: 14198295--14198362 Score: 64
Period size: 21 Copynumber: 3.3 Consensus size: 19
14198285 GTAAAATTTA
*
14198295 ATTAGAATATATAAATTATAT
1 ATTA-AATATTTAAATTA-AT
*
14198316 TTTAAATATTTAAATATAAT
1 ATTAAATATTTAAAT-TAAT
14198336 CATTAAATATTTATAATTAGAT
1 -ATTAAATATTTA-AATTA-AT
14198358 ATTAA
1 ATTAA
14198363 CACATTTGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 12 0.30
21 23 0.57
22 5 0.12
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (19 bp):
ATTAAATATTTAAATTAAT
Found at i:14203568 original size:23 final size:23
Alignment explanation
Indices: 14203533--14203609 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
14203523 GTGTGTGTCT
* *
14203533 TCTTAACTTTTCATCTTCAAGTC
1 TCTTCACTTTTCATATTCAAGTC
* *
14203556 TCTTCACTATTCATATTCAAGTT
1 TCTTCACTTTTCATATTCAAGTC
*
14203579 TTTTCACTTTTCATATTCAAGTC
1 TCTTCACTTTTCATATTCAAGTC
14203602 TCTTCACT
1 TCTTCACT
14203610 CTTCTAACTT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.22, C:0.25, G:0.04, T:0.49
Consensus pattern (23 bp):
TCTTCACTTTTCATATTCAAGTC
Found at i:14213757 original size:30 final size:30
Alignment explanation
Indices: 14213722--14213793 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
14213712 CACGGGTAGT
** *
14213722 CACACAGTCGTGTGTCACACACGGTTTGGC
1 CACACAGTCGTGTGTCACACACGGCCTAGC
* * *
14213752 CACACAGTTGTGTGTGACATACGGCCTAGC
1 CACACAGTCGTGTGTCACACACGGCCTAGC
*
14213782 CACATAGTCGTG
1 CACACAGTCGTG
14213794 AGCCTTATTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (30 bp):
CACACAGTCGTGTGTCACACACGGCCTAGC
Found at i:14214416 original size:27 final size:27
Alignment explanation
Indices: 14214378--14214432 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
14214368 AATACTTAGG
*
14214378 AAAGAATTCACCTAGATTTCATCTGTT
1 AAAGAATTCACCTAGATTTCATATGTT
14214405 AAAGAATTCACCTAGATTTCATATGTT
1 AAAGAATTCACCTAGATTTCATATGTT
14214432 A
1 A
14214433 TTATCAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (27 bp):
AAAGAATTCACCTAGATTTCATATGTT
Found at i:14216013 original size:21 final size:22
Alignment explanation
Indices: 14215989--14216031 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14215979 AAAAATATTT
14215989 TTATAT-AAAT-TTAATTATAAA
1 TTATATAAAATATTAA-TATAAA
14216010 TTATATAAAATATTAATATAAA
1 TTATATAAAATATTAATATAAA
14216032 ACCATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 10 0.50
23 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TTATATAAAATATTAATATAAA
Found at i:14216848 original size:30 final size:30
Alignment explanation
Indices: 14216814--14216876 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
14216804 ACTTAACAAG
14216814 CAAATGCC-TCTAAAATAATAACAAAATTAA
1 CAAATGCCTTC-AAAATAATAACAAAATTAA
14216844 CAAATGCCTTCAAAATAATAACAAAATTAA
1 CAAATGCCTTCAAAATAATAACAAAATTAA
14216874 CAA
1 CAA
14216877 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.57, C:0.17, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTTCAAAATAATAACAAAATTAA
Found at i:14219232 original size:13 final size:13
Alignment explanation
Indices: 14219200--14219241 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
14219190 GCGCATGAAT
*
14219200 ATAAA-AATAAAA
1 ATAAATAATAATA
* *
14219212 AAAAATAATTATA
1 ATAAATAATAATA
14219225 ATAAATAATAATA
1 ATAAATAATAATA
14219238 ATAA
1 ATAA
14219242 CAATAATACT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATAAATAATAATA
Found at i:14219718 original size:22 final size:21
Alignment explanation
Indices: 14219683--14219778 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 21
14219673 AAAAGGTATC
* *
14219683 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
14219704 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* * *
14219727 TTCATATCATA--TCTAAAAT
1 TACAAATCATATCTCTAAGAT
* *
14219746 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
14219765 TATATATCATATCT
1 TACAAATCATATCT
14219779 AAGATTGCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
19 33 0.53
21 4 0.06
22 15 0.24
23 10 0.16
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:14219726 original size:23 final size:22
Alignment explanation
Indices: 14219683--14219740 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14219673 AAAAGGTATC
* *
14219683 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14219704 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14219727 TTCATATCATATCT
1 TACAAATCATATCT
14219741 AAAATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14219751 original size:19 final size:19
Alignment explanation
Indices: 14219719--14219793 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
14219709 AATCATATCT
*
14219719 TCTAAGATTTCATATCATA
1 TCTAAGATTGCATATCATA
*
14219738 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
14219757 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
14219776 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14219794 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14219765 original size:38 final size:37
Alignment explanation
Indices: 14219712--14219803 Score: 127
Period size: 38 Copynumber: 2.5 Consensus size: 37
14219702 ATTACAAAAT
14219712 CATATC-TTCTAAGATT-TCATATCATATCTAAAATTG
1 CATATCATTCTAAGATTAT-ATATCATATCTAAAATTG
*
14219748 CATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTATATATCATATCTAAAATTG
*
14219786 CATATCATT-GAAGATTAT
1 CATATCATTCTAAGATTAT
14219804 GTTTCCATAT
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
36 14 0.27
37 2 0.04
38 34 0.67
39 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (37 bp):
CATATCATTCTAAGATTATATATCATATCTAAAATTG
Found at i:14240294 original size:18 final size:18
Alignment explanation
Indices: 14240271--14240308 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14240261 AAGAATAGTG
14240271 TTTCATATCAGTAACACT
1 TTTCATATCAGTAACACT
14240289 TTTCATATCAGTAACACT
1 TTTCATATCAGTAACACT
14240307 TT
1 TT
14240309 AGAACCATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (18 bp):
TTTCATATCAGTAACACT
Found at i:14247038 original size:14 final size:14
Alignment explanation
Indices: 14247019--14247045 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14247009 TTAAAAAAAT
14247019 TTAAGTTTGATTTA
1 TTAAGTTTGATTTA
14247033 TTAAGTTTGATTT
1 TTAAGTTTGATTT
14247046 TAAACTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (14 bp):
TTAAGTTTGATTTA
Found at i:14249830 original size:5 final size:5
Alignment explanation
Indices: 14249820--14249872 Score: 63
Period size: 5 Copynumber: 10.4 Consensus size: 5
14249810 GAATAAATAT
* *
14249820 ATTCG ATTCG ATTCG ATTCG ATTCG AATTCT ATCTC- ACTCG ATTCG ATTCG
1 ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG ATTCG
14249871 AT
1 AT
14249873 AAAACTTCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 2 0.05
5 34 0.81
6 6 0.14
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (5 bp):
ATTCG
Found at i:14253969 original size:25 final size:25
Alignment explanation
Indices: 14253941--14254023 Score: 98
Period size: 25 Copynumber: 3.3 Consensus size: 25
14253931 ATGGCTTTCT
*
14253941 TGAGCTTCCCGA-TAATTGGTTCGCA
1 TGAGCTTCCCGATTTA-TGGTTCGCA
* *
14253966 TGAGTTTCCCAATTTATGGCTT-GCA
1 TGAGCTTCCCGATTTATGG-TTCGCA
*
14253991 TGAGCTTCCCGATTTATGGCTCGCA
1 TGAGCTTCCCGATTTATGGTTCGCA
14254016 TGAGCTTC
1 TGAGCTTC
14254024 TCTATATACA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 44 0.90
26 4 0.08
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (25 bp):
TGAGCTTCCCGATTTATGGTTCGCA
Found at i:14256239 original size:24 final size:22
Alignment explanation
Indices: 14256187--14256241 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 22
14256177 CTAATTAAGT
* *
14256187 GCTCTTCGGAGCTTCCCATTAA
1 GCTCTTTGGAGCTACCCATTAA
14256209 GTTCTCTTTGGAGCTACCCGATATAA
1 G--CTCTTTGGAGCTACCC-AT-TAA
14256235 GCTCTTT
1 GCTCTTT
14256242 TGTAAGCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
24 20 0.74
25 2 0.07
26 4 0.15
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.36
Consensus pattern (22 bp):
GCTCTTTGGAGCTACCCATTAA
Found at i:14267787 original size:48 final size:48
Alignment explanation
Indices: 14267718--14267811 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
14267708 TTCTTTGCTT
* *
14267718 AAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAGTA
1 AAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAGTA
* *
14267766 AAAACGCCTAAGTCGGCCTAACTTACAATAATAAAGGATTCAACAG
1 AAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAG
14267812 AATTCCCTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (48 bp):
AAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAGTA
Found at i:14268054 original size:36 final size:36
Alignment explanation
Indices: 14268007--14268075 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
14267997 TAAAGGCTAT
*
14268007 AATTAAAAGCTGTATACAATTAGATCTCTAAGACAC
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAC
*
14268043 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
14268076 TTACATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAC
Found at i:14270397 original size:48 final size:48
Alignment explanation
Indices: 14270326--14270421 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
14270316 TTTCTTTGCT
* *
14270326 TAAAAACGCCTAAGTCAGCCTAACTCGCAATGATAAAGGATTCAACAG
1 TAAAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAG
*
14270374 TAAAAACGCCTAAGTCAGCCTAACTTACAATAATAAAGGATTCAACAG
1 TAAAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAG
14270422 AATTCCCTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.44, C:0.22, G:0.15, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTCACAATAATAAAGGATTCAACAG
Found at i:14270647 original size:17 final size:17
Alignment explanation
Indices: 14270625--14270688 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
14270615 CATCAAATGC
*
14270625 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
14270642 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
14270661 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
14270678 TACAATTAGAA
1 TACAATTAGAA
14270689 CTTTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:14270674 original size:36 final size:36
Alignment explanation
Indices: 14270626--14270696 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
14270616 ATCAAATGCT
14270626 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
* *
14270662 ACAATTAGAAGCTGTATACAATTAGAACTTTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
14270697 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:14272406 original size:24 final size:24
Alignment explanation
Indices: 14272361--14272407 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14272351 CATATTTTAA
* **
14272361 ATTTAATTTTATTTAAGTATTTTT
1 ATTTAAATTTATTTAAAAATTTTT
14272385 ATTTAAATTTATTTAAAAATTTT
1 ATTTAAATTTATTTAAAAATTTT
14272408 ATCAAATTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (24 bp):
ATTTAAATTTATTTAAAAATTTTT
Found at i:14282356 original size:223 final size:222
Alignment explanation
Indices: 14281915--14282361 Score: 867
Period size: 223 Copynumber: 2.0 Consensus size: 222
14281905 GTTTTAACTT
14281915 CTGTCTATATCAATCCATGTGACCAACATTGTAACAACTAAGATTGACAAAGAAAGAAGAGGAAA
1 CTGTCTATATCAATCCATGTGACCAACATTGTAACAACTAAGATTGACAAAGAAAGAAGAGGAAA
14281980 CAATAGAAGTGAATACAGAGAGATAACAGTTTTAGCAATTGAGGCCAAAATATGTCAGTTTCCAC
66 CAATAGAAGTGAATACAGAGAGATAACAGTTTTAGCAATTGAGGCCAAAATATGTCAGTTTCCAC
14282045 TCAACAACCTAAATCCTAGCTTTTGGGGTTCTAGAAAAATAAAAAAAATATTGAAACTCGCACTC
131 TCAACAACCTAAATCCTAGCTTTTGGGGTTCTAGAAAAATAAAAAAAATATTGAAACTCGCACTC
*
14282110 TTACGACAACCTAAATTCATGTTCTCA
196 TTACGACAACCTAAATCCATGTTCTCA
14282137 CTGTCTATATCAATCCATGTGACCAACATTGTAACAACTAAGATTGACAAAGAAAGAAGAGGAAA
1 CTGTCTATATCAATCCATGTGACCAACATTGTAACAACTAAGATTGACAAAGAAAGAAGAGGAAA
*
14282202 CAATAGAAGTGAATGCAGAGAGATAACAGTTTTAGCAATTTGAGGCCAAAATATGTCAGTTTCCA
66 CAATAGAAGTGAATACAGAGAGATAACAGTTTTAGCAA-TTGAGGCCAAAATATGTCAGTTTCCA
14282267 CTCAACAACCTAAATCCTAGCTTTTGGGGTTCTAGAAAAATAAAAAAAATATTGAAACTCGCACT
130 CTCAACAACCTAAATCCTAGCTTTTGGGGTTCTAGAAAAATAAAAAAAATATTGAAACTCGCACT
14282332 CTTACGACAACCTAAATCCATGTTCTCA
195 CTTACGACAACCTAAATCCATGTTCTCA
14282360 CT
1 CT
14282362 TCTTTTCCAA
Statistics
Matches: 222, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
222 102 0.46
223 120 0.54
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (222 bp):
CTGTCTATATCAATCCATGTGACCAACATTGTAACAACTAAGATTGACAAAGAAAGAAGAGGAAA
CAATAGAAGTGAATACAGAGAGATAACAGTTTTAGCAATTGAGGCCAAAATATGTCAGTTTCCAC
TCAACAACCTAAATCCTAGCTTTTGGGGTTCTAGAAAAATAAAAAAAATATTGAAACTCGCACTC
TTACGACAACCTAAATCCATGTTCTCA
Found at i:14284499 original size:13 final size:12
Alignment explanation
Indices: 14284481--14284515 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
14284471 TTAATACCCT
14284481 TTTTGTTGTTTAA
1 TTTTGTT-TTTAA
14284494 TTTTGTTTTT-A
1 TTTTGTTTTTAA
14284505 TTTTGTTTTTA
1 TTTTGTTTTTA
14284516 GTTCTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.52
12 3 0.14
13 7 0.33
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.77
Consensus pattern (12 bp):
TTTTGTTTTTAA
Found at i:14289719 original size:3 final size:3
Alignment explanation
Indices: 14289711--14289753 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
14289701 ATTTATGACG
14289711 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
14289754 GTTTTAGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14290976 original size:12 final size:12
Alignment explanation
Indices: 14290961--14290989 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14290951 AAATTTATTT
14290961 TAAAAATTAAAA
1 TAAAAATTAAAA
14290973 TAAAAATTAAAA
1 TAAAAATTAAAA
14290985 -AAAAA
1 TAAAAA
14290990 GTATTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:14291028 original size:40 final size:41
Alignment explanation
Indices: 14290956--14291109 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 41
14290946 ACCAAAAATT
14290956 TATTTTAAAAATTAAAATAAAAATTAAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAA-AAAAATT--AAAAAAAGTATTTTAAAAA
14291002 TATTTTAAAATT-AAAAAAATTAAAAAAAGTATTTTTAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAAGTA-TTTTAAAAA
* * *
14291043 -ATTTTAAAATTAAAAAAAAATAAAAATA-TATTTTAAAAG
1 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
*
14291082 TATTTTAAAATT-AAAAAAATAAAAAAAA
1 TATTTTAAAATTAAAAAAAATTAAAAAAA
14291110 ATAAAAATAT
Statistics
Matches: 99, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
39 21 0.21
40 34 0.34
41 23 0.23
42 7 0.07
43 2 0.02
45 6 0.06
46 6 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:14293976 original size:15 final size:15
Alignment explanation
Indices: 14293934--14293986 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14293924 TTATATACTT
*
14293934 TTAATTAAA-TCTAA
1 TTAATTAAACTTTAA
* *
14293948 TTAATCATAA-TTTAT
1 TTAATTA-AACTTTAA
14293963 TTAATTAAACTTTAA
1 TTAATTAAACTTTAA
14293978 TTAATTAAA
1 TTAATTAAA
14293987 AATTAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
14 8 0.25
15 24 0.75
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATTAAACTTTAA
Found at i:14295180 original size:13 final size:13
Alignment explanation
Indices: 14295128--14295189 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
14295118 TAAACCAAAT
14295128 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
14295141 TTCTT-AAAAGTAC
1 TT-TTCAAAAGCAC
* *
14295154 TTTTC-CATGTCAC
1 TTTTCAAAAG-CAC
14295167 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
14295180 TTTTTAAAAG
1 TTTTCAAAAG
14295190 TATTGCCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
12 4 0.11
13 30 0.79
14 4 0.11
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:14298293 original size:12 final size:12
Alignment explanation
Indices: 14298276--14298310 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
14298266 TGTTCACAAT
14298276 AAAATATTAATA
1 AAAATATTAATA
*
14298288 AAAATA-TAATT
1 AAAATATTAATA
14298299 AAAATATTAATA
1 AAAATATTAATA
14298311 TTATAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAATATTAATA
Found at i:14300885 original size:118 final size:118
Alignment explanation
Indices: 14300695--14300907 Score: 279
Period size: 118 Copynumber: 1.8 Consensus size: 118
14300685 AAAAACTGTA
* *
14300695 CCCAACACTCATTGACACATAGTCGAAGTAACCATTTGGCACTCGGTGCCTCATCGAAATGTCCA
1 CCCAACACTCATTGACACATAGTCGAAGTAACCAGTTGGCACTCGGTACCTCATCGAAATGTCCA
*
14300760 AAGTAATTAGTTTGCGCCCAACGCTCATCAGTATAATCAAAGTAAAGGTTCTG
66 AAGTAATTAGTTTGCACCCAACGCTCATCAGTATAATCAAAGTAAAGGTTCTG
** * * *
14300813 CCCAACACTCATTGACATGTAGTCGAAGTAACCAGTTGGCAC-CTGGTATCTTATTGAAACT-TC
1 CCCAACACTCATTGACACATAGTCGAAGTAACCAGTTGGCACTC-GGTACCTCATCGAAA-TGTC
* **
14300876 TGAAA-TAATTAGTTTGCACCCAATTCTCATCA
64 -CAAAGTAATTAGTTTGCACCCAACGCTCATCA
14300908 ACATATAGTC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
117 1 0.01
118 76 0.94
119 4 0.05
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (118 bp):
CCCAACACTCATTGACACATAGTCGAAGTAACCAGTTGGCACTCGGTACCTCATCGAAATGTCCA
AAGTAATTAGTTTGCACCCAACGCTCATCAGTATAATCAAAGTAAAGGTTCTG
Found at i:14306672 original size:37 final size:37
Alignment explanation
Indices: 14306624--14306700 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
14306614 TATGTTCATG
14306624 TTTTCTGAACTTACTAAGCATTATATGCTTACGTAGT
1 TTTTCTGAACTTACTAAGCATTATATGCTTACGTAGT
14306661 TTTTCTGAACTTACTAAGCATTATATGCTTACGTAGT
1 TTTTCTGAACTTACTAAGCATTATATGCTTACGTAGT
14306698 TTT
1 TTT
14306701 CTTTCCTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (37 bp):
TTTTCTGAACTTACTAAGCATTATATGCTTACGTAGT
Found at i:14310635 original size:17 final size:17
Alignment explanation
Indices: 14310613--14310649 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
14310603 CTAATAGGGG
14310613 AATTCATAGACCGAGTT
1 AATTCATAGACCGAGTT
14310630 AATTCATAGACCGAGTT
1 AATTCATAGACCGAGTT
14310647 AAT
1 AAT
14310650 GCTGGAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (17 bp):
AATTCATAGACCGAGTT
Found at i:14311630 original size:2 final size:2
Alignment explanation
Indices: 14311623--14311659 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14311613 TATACCCATT
14311623 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14311660 TTCACATGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Done.