Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 54 of 230
Found at i:14621331 original size:30 final size:30
Alignment explanation
Indices: 14621296--14621353 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14621286 TCCAAGCAAC
*
14621296 AAAATTATGTGGATATGGTTGTATTGTTGA
1 AAAATTATGTGGACATGGTTGTATTGTTGA
* **
14621326 AAAATTTTGTGTCCATGGTTGTATTGTT
1 AAAATTATGTGGACATGGTTGTATTGTT
14621354 AGATACTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (30 bp):
AAAATTATGTGGACATGGTTGTATTGTTGA
Found at i:14633133 original size:15 final size:16
Alignment explanation
Indices: 14633079--14633134 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
14633069 AATATTCGTT
* *
14633079 TAAAAAAAACAAAATTA
1 TAAAAATAATAAAA-TA
*
14633096 TAAAAATTATAAAA-A
1 TAAAAATAATAAAATA
*
14633111 TAATAATAATAAAATA
1 TAAAAATAATAAAATA
14633127 -AAAAATAA
1 TAAAAATAA
14633135 AGCTTAAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
15 20 0.62
16 1 0.03
17 11 0.34
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAAATAATAAAATA
Found at i:14634499 original size:44 final size:44
Alignment explanation
Indices: 14634445--14634689 Score: 155
Period size: 44 Copynumber: 5.5 Consensus size: 44
14634435 GATCTGCTCT
*
14634445 CTGCAACTTCAGAGAGATAAGATTCA-AGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATT-ATAGACTTTAATCCGCTCCA
* * * * *
14634489 CTGCACCTTCAGGGAGAT-AGATTATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATTATAGACTTTAATCCGCTCCA
** *
14634532 CTGCAACTTCAGAGAGATAAGATT-T-GCCATCTTTTCTTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATTATAG--A-C-TTTAATCCGCTC-CA
* * * * *
14634578 CTGCAACTTTAG-GAGGATAAGACTTGCT-TAC-TTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGA-TT-ATAGACTTTAATCCGCTCCA
* * * * * *
14634622 CTGCAACTTTAGGGAGATAGGATTATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATTATAGACTTTAATCCGCTCCA
* *
14634666 CTGCAACTTCGGGGAGATAAGATT
1 CTGCAACTTCAGAGAGATAAGATT
14634690 CGTACGTTTG
Statistics
Matches: 163, Mismatches: 23, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.02
43 39 0.24
44 81 0.50
45 7 0.04
46 29 0.18
47 3 0.02
49 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATTATAGACTTTAATCCGCTCCA
Found at i:14635050 original size:44 final size:44
Alignment explanation
Indices: 14634998--14635109 Score: 154
Period size: 44 Copynumber: 2.5 Consensus size: 44
14634988 AACCTGCTCT
* * * *
14634998 CTGCAACTTTAGAGAGATAAGATCTA-TGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGAT-TATTGGTTTTAATCCACTCAA
* *
14635042 CTGCAACTTCAGGGAGATAGGATTATTGGTTTTAATCTACTCAA
1 CTGCAACTTCAGGGAGATAAGATTATTGGTTTTAATCCACTCAA
14635086 CTGCAACTTCAGGGAGATAAGATT
1 CTGCAACTTCAGGGAGATAAGATT
14635110 CTCAATCTTC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 2 0.03
44 58 0.97
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATTATTGGTTTTAATCCACTCAA
Found at i:14635472 original size:44 final size:44
Alignment explanation
Indices: 14635422--14635708 Score: 279
Period size: 44 Copynumber: 6.7 Consensus size: 44
14635412 ATCTGCTATT
* * * *
14635422 TTCAACCTACTCCACTGCTG-CTTAGGGAGATAGGGTTCACGATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* * *
14635466 TTCAACCTATTCCACTCCTGACCAGAGAGATAGGA-CCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
* * * * * *
14635510 TTCAATCTATTCCACTGATGCCCAGGGAGATAGAATTCTCAGTC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14635554 TTCAACCTATTCCACTGCTGACCAGGGAGGTAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
14635598 TTTAACCTATTCCACTGCT-ATCCAGGGAGAT-GAGATT--C--T-
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATAG-GATTCACAATC
* * * *
14635637 TT-AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
14635680 TTCAGCCTATTCCACTACTGACCAGGGAG
1 TTCAACCTATTCCACTGCTGACCAGGGAG
14635709 GCAAGGCTGG
Statistics
Matches: 198, Mismatches: 32, Indels: 26
0.77 0.12 0.10
Matches are distributed among these distances:
38 28 0.14
39 3 0.02
40 2 0.01
42 2 0.01
43 5 0.03
44 156 0.79
45 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:14635569 original size:132 final size:126
Alignment explanation
Indices: 14635422--14635708 Score: 355
Period size: 126 Copynumber: 2.2 Consensus size: 126
14635412 ATCTGCTATT
* * * *
14635422 TTCAACCTACTCCACTGCTG-CTTAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTCCTG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTCCT-
14635486 A-CCAGAGAGAT-AGGACCTACAATCTTCAATCTATTCCACTGATGCCCAGGGAGATAGAATTCT
64 ATCCAGAGAGATGA-GA--T----TCTTCAATCTATTCCACTGATGCCCAGGGAGATAGAATTCT
*
14635549 CAGTC
122 CAATC
* * *
14635554 TTCAACCTATTCCACTGCTGACCAGGGAGGTAGGATTCACAATCTTTAACCTATTCCACTGCTAT
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTCCTAT
* * *
14635619 CCAGGGAGATGAGATTCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
66 CCAGAGAGATGAGATTCTTCAATCTATTCCACTGATGCCCAGGGAGATAGAATTCTCAATC
* *
14635680 TTCAGCCTATTCCACTACTGACCAGGGAG
1 TTCAACCTATTCCACTGCTGACCAGGGAG
14635709 GCAAGGCTGG
Statistics
Matches: 139, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
126 70 0.50
130 1 0.01
131 1 0.01
132 65 0.47
133 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (126 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTCCTAT
CCAGAGAGATGAGATTCTTCAATCTATTCCACTGATGCCCAGGGAGATAGAATTCTCAATC
Found at i:14636183 original size:42 final size:43
Alignment explanation
Indices: 14636053--14636195 Score: 150
Period size: 42 Copynumber: 3.3 Consensus size: 43
14636043 TCCGCTGCTA
*
14636053 CTCAGGGAGATAAGGCT-AGGGACTTCGATCTGCTCCACTACTG
1 CTCAGGGAGATAAGGCTGA-GGACTTCAATCTGCTCCACTACTG
* * * * * *
14636096 CTTAGGGAGATAAGATCTGTA--ATTTTCAACCTACTCCACTGCTG
1 CTCAGGGAGATAAG-GCTG-AGGA-CTTCAATCTGCTCCACTACTG
14636140 CTCAGGGAGAT-AGGCTGAGGACTTCAATCTGCTCCACTACTG
1 CTCAGGGAGATAAGGCTGAGGACTTCAATCTGCTCCACTACTG
*
14636182 CTTAGGGAGATAAG
1 CTCAGGGAGATAAG
14636196 ATCTGCAATC
Statistics
Matches: 79, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.38
43 19 0.24
44 28 0.35
46 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (43 bp):
CTCAGGGAGATAAGGCTGAGGACTTCAATCTGCTCCACTACTG
Found at i:14636188 original size:86 final size:87
Alignment explanation
Indices: 14635975--14636210 Score: 341
Period size: 86 Copynumber: 2.7 Consensus size: 87
14635965 CAAGGGAGGC
* * * * *
14635975 AAGGCTAGTGTCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTTTTTAACC
1 AAGGCTAGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA--TTTTCAACC
*
14636040 TACTCCGCTGCTACTCAGGGAGAT
64 TACTCCACTGCTACTCAGGGAGAT
14636064 AAGGCTAGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
1 AAGGCTAGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
*
14636129 CTCCACTGCTGCTCAGGGAGAT
66 CTCCACTGCTACTCAGGGAGAT
* * *
14636151 -AGGCT-GAGGACTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAA
1 AAGGCTAG-GGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
14636211 TCTGCTTCGT
Statistics
Matches: 136, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
85 1 0.01
86 55 0.40
87 30 0.22
89 50 0.37
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (87 bp):
AAGGCTAGGGACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
CTCCACTGCTACTCAGGGAGAT
Found at i:14637553 original size:15 final size:16
Alignment explanation
Indices: 14637518--14637547 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14637508 TTGGCCTCTC
14637518 CTTTTTCTTTTT-TTG
1 CTTTTTCTTTTTCTTG
14637533 CTTTTTCTTTTTCTT
1 CTTTTTCTTTTTCTT
14637548 TTTTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 12 0.86
16 2 0.14
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (16 bp):
CTTTTTCTTTTTCTTG
Found at i:14643951 original size:17 final size:17
Alignment explanation
Indices: 14643931--14643968 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14643921 AATATTCGTT
14643931 TAAAAAAAACAAAATAA
1 TAAAAAAAACAAAATAA
* *
14643948 TAAAAATAATAAAATAA
1 TAAAAAAAACAAAATAA
14643965 -AAAA
1 TAAAA
14643969 TAAAGCTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (17 bp):
TAAAAAAAACAAAATAA
Found at i:14647029 original size:11 final size:11
Alignment explanation
Indices: 14647013--14647042 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14647003 ATTAATGTAA
14647013 AAAAAAAAAAG
1 AAAAAAAAAAG
*
14647024 AAAAAAAGAAG
1 AAAAAAAAAAG
14647035 AAAAAAAA
1 AAAAAAAA
14647043 GCATGAATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:14647712 original size:28 final size:29
Alignment explanation
Indices: 14647628--14647712 Score: 75
Period size: 30 Copynumber: 2.8 Consensus size: 29
14647618 TTATTTATTT
*
14647628 AAGGTTTAAGAATTTTTTTAA-AAATAAATC
1 AAGGTTT-AG-ATTTTTTTAATAATTAAATC
* *
14647658 AAGGTTTAGACTTTTTTAAAATTAATTAAATT
1 AAGGTTTAGA-TTTTTT-TAA-TAATTAAATC
*
14647690 AGGGTTTAG-TTTTTTTAATAATT
1 AAGGTTTAGATTTTTTTAATAATT
14647713 TGTGTGTTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
28 6 0.13
29 10 0.22
30 15 0.33
32 15 0.33
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (29 bp):
AAGGTTTAGATTTTTTTAATAATTAAATC
Found at i:14649841 original size:29 final size:30
Alignment explanation
Indices: 14649778--14649842 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
14649768 ACAGGCTATT
*
14649778 ATAAAAAAATATAAAATTAAAATTACATAA
1 ATAAAAAAATATAAAATTAAAATTACAAAA
* *
14649808 ATAAAAAAATATTAAA-TAATATT-CAAAA
1 ATAAAAAAATATAAAATTAAAATTACAAAA
*
14649836 ATTAAAA
1 ATAAAAA
14649843 TTAACCCTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 10 0.32
29 6 0.19
30 15 0.48
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (30 bp):
ATAAAAAAATATAAAATTAAAATTACAAAA
Found at i:14649845 original size:24 final size:21
Alignment explanation
Indices: 14649779--14649846 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 21
14649769 CAGGCTATTA
*
14649779 TAAAAAAATATAAAATTAAAAT
1 TAAATAAATA-AAAATTAAAAT
* *
14649801 TACATAAATAAAAA--AATAT
1 TAAATAAATAAAAATTAAAAT
14649820 TAAATAATATTCAAAAATTAAAAT
1 TAAATAA-A-T-AAAAATTAAAAT
14649844 TAA
1 TAA
14649847 CCCTTGCCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 10 0.28
20 1 0.03
21 5 0.14
22 13 0.36
24 7 0.19
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAATAAATAAAAATTAAAAT
Found at i:14653715 original size:24 final size:24
Alignment explanation
Indices: 14653683--14653732 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14653673 TGGTGGCGAT
14653683 GCGTCTGCCCTAACATGGGGTTCA
1 GCGTCTGCCCTAACATGGGGTTCA
14653707 GCGTCTGCCCTAACATGGGGTTCA
1 GCGTCTGCCCTAACATGGGGTTCA
14653731 GC
1 GC
14653733 ACCGACATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.24
Consensus pattern (24 bp):
GCGTCTGCCCTAACATGGGGTTCA
Found at i:14656986 original size:18 final size:18
Alignment explanation
Indices: 14656963--14656998 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14656953 ATGTCGGTTT
14656963 TGAGAGCGGCGAGGATGA
1 TGAGAGCGGCGAGGATGA
14656981 TGAGAGCGGCGAGGATGA
1 TGAGAGCGGCGAGGATGA
14656999 AGGGGTATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.50, T:0.11
Consensus pattern (18 bp):
TGAGAGCGGCGAGGATGA
Found at i:14660476 original size:25 final size:27
Alignment explanation
Indices: 14660431--14660482 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
14660421 TTTATATTAA
14660431 AATTTTTTTTGTTTAAAT-AAAATATT
1 AATTTTTTTTGTTTAAATAAAAATATT
*
14660457 AATTTTTTATT-TTT-ATTAAAAATATT
1 AATTTTTT-TTGTTTAAATAAAAATATT
14660483 TAAATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 2 0.09
26 19 0.83
27 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTTTTTTTGTTTAAATAAAAATATT
Found at i:14660564 original size:27 final size:27
Alignment explanation
Indices: 14660534--14660592 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
14660524 TACAGGTTGC
* *
14660534 GCCTGTCAGATAGACGCGATTAATCGA
1 GCCTGTCAGATAGACACGACTAATCGA
14660561 GCCTGTCAGATAGACACGACTAATCGA
1 GCCTGTCAGATAGACACGACTAATCGA
14660588 GCCTG
1 GCCTG
14660593 ACAAGTAAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.20
Consensus pattern (27 bp):
GCCTGTCAGATAGACACGACTAATCGA
Found at i:14661407 original size:21 final size:21
Alignment explanation
Indices: 14661370--14661409 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14661360 TGGCAAATGC
*
14661370 TTTTATTAAAATTATTTAAAA
1 TTTTATTAAAATAATTTAAAA
14661391 TTTTAATTAAAA-AATTTAA
1 TTTT-ATTAAAATAATTTAA
14661410 CACCCACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTATTAAAATAATTTAAAA
Found at i:14663597 original size:12 final size:12
Alignment explanation
Indices: 14663580--14663617 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
14663570 GCATCATGCA
*
14663580 CCAGAGCCAGAG
1 CCAGAGCCGGAG
14663592 CCAGAGCCGGAG
1 CCAGAGCCGGAG
14663604 CCAGAGCCGGAG
1 CCAGAGCCGGAG
14663616 CC
1 CC
14663618 GGAACTACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.37, G:0.37, T:0.00
Consensus pattern (12 bp):
CCAGAGCCGGAG
Found at i:14663606 original size:18 final size:18
Alignment explanation
Indices: 14663583--14663620 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14663573 TCATGCACCA
14663583 GAGCCAGAGCCAGAGCCG
1 GAGCCAGAGCCAGAGCCG
*
14663601 GAGCCAGAGCCGGAGCCG
1 GAGCCAGAGCCAGAGCCG
14663619 GA
1 GA
14663621 ACTACATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.42, T:0.00
Consensus pattern (18 bp):
GAGCCAGAGCCAGAGCCG
Found at i:14663620 original size:6 final size:6
Alignment explanation
Indices: 14663580--14663617 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
14663570 GCATCATGCA
* *
14663580 CCAGAG CCAGAG CCAGAG CCGGAG CCAGAG CCGGAG CC
1 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CC
14663618 GGAACTACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.26, C:0.37, G:0.37, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:14663772 original size:33 final size:34
Alignment explanation
Indices: 14663730--14663810 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 34
14663720 CAGCCCACTA
14663730 CCACCTCAGTACTCTAG-T-CATCCTAGCTCGTAT
1 CCACCTCAGTACTCTAGCTCCATCC-AGCTCGTAT
* * *
14663763 CCACCTCAGTACTC-CGCTCCTTCCGGCTCGTAT
1 CCACCTCAGTACTCTAGCTCCATCCAGCTCGTAT
*
14663796 CCACCTCAATACTCT
1 CCACCTCAGTACTCT
14663811 GCTTCTTTCG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.02
33 36 0.88
34 4 0.10
ACGTcount: A:0.19, C:0.42, G:0.11, T:0.28
Consensus pattern (34 bp):
CCACCTCAGTACTCTAGCTCCATCCAGCTCGTAT
Found at i:14663829 original size:33 final size:33
Alignment explanation
Indices: 14663755--14663831 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
14663745 AGTCATCCTA
*
14663755 GCTCGTATCCACCTCAGTACTCCGCTCCTTCCG
1 GCTCGTATCCACCTCAATACTCCGCTCCTTCCG
* * *
14663788 GCTCGTATCCACCTCAATACTCTGCTTCTTTCG
1 GCTCGTATCCACCTCAATACTCCGCTCCTTCCG
14663821 GC-CTGTATCCA
1 GCTC-GTATCCA
14663832 TCGCCATACT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 1 0.03
33 38 0.97
ACGTcount: A:0.14, C:0.40, G:0.14, T:0.31
Consensus pattern (33 bp):
GCTCGTATCCACCTCAATACTCCGCTCCTTCCG
Found at i:14668018 original size:27 final size:25
Alignment explanation
Indices: 14667966--14668018 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
14667956 TCGAGCTAAC
* * *
14667966 ATATACAAATAATTATATTTATTCA
1 ATATAAAAATAATTATATATAGTCA
14667991 ATATAAAAATAAATTGATATATAGTCA
1 ATATAAAAAT-AATT-ATATATAGTCA
14668018 A
1 A
14668019 CTCTCTCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 9 0.39
26 4 0.17
27 10 0.43
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (25 bp):
ATATAAAAATAATTATATATAGTCA
Found at i:14672900 original size:19 final size:20
Alignment explanation
Indices: 14672865--14672903 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14672855 AAATATACAA
14672865 ATATATAGAAAAAAATAATT
1 ATATATAGAAAAAAATAATT
*
14672885 ATATAT-GAAAATAATAATT
1 ATATATAGAAAAAAATAATT
14672904 TCATTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
ATATATAGAAAAAAATAATT
Found at i:14674643 original size:44 final size:44
Alignment explanation
Indices: 14674565--14675406 Score: 655
Period size: 44 Copynumber: 19.3 Consensus size: 44
14674555 TCAGGGAGAT
* * *
14674565 AAGAT-TTATATCTTTGATCTACTTCATGCCAATACATGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* *
14674608 AATATCTGTC-ATCTTCGATCTACTTCACGCTAATACATGAAGAC
1 AAGATCT-TCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * *
14674652 AAGATCTTCTACCTTTGATCTACTTCATGCCGATACATGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * *
14674696 AAGATCTTCTACCATT-GATCTAGTTCATGCCGATACATGAAGAC
1 AAGATCTTCTATC-TTCGATCTACTTCACGCCAATACATGAAGAC
14674740 AAGATCCATT-T-TCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGAT-C-TTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * *
14674784 AAGATCTTTTACCTTTGATCTACTTCATGCCGATACATGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
*
14674828 AAGATCCATT-T-TCTTCGATCTACTTCACGCAAATACATGAAGAC
1 AAGAT-C-TTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * ** * *
14674872 AAGATCTTCTACCTTTGATCTACTTCATACCGATACATGAAGAA
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* *
14674916 AAGATCTAT-TTTCTTCGATCTACTTCACGCCAATACATGAAGAT
1 AAGATCT-TCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * *
14674960 AAAATCTGCTACCTTTGATCTACTTCACGCCGATACATGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
14675004 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* * * * * * * *
14675049 AAGATCTGCTATCTTCAATCCACTTCGCTACCAATATAGGAAGAT
1 AAGATCTTCTATCTTCGATCTACTTCAC-GCCAATACATGAAGAC
*
14675094 AAGAT-TTACTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTT-CTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
14675138 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* ** * *
14675183 AAG-------ATCTTCGATCCACTTC-CTACAATATAGGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* *
14675219 AGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * ***
14675263 AAGATCTGCTTTCTTCGATCTACTTTGC-CACCAGTATGGGAAGAC
1 AAGATCTTCTATCTTCGATCTAC-TT-CACGCCAATACATGAAGAC
* * * * * * *
14675308 AAGATATGC-ACCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATCTTCTATCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* * *
14675351 -AGAACCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGAC
1 AAG-ATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* *
14675395 AATATCTGCTAT
1 AAGATCTTCTAT
14675407 TTTCAACCTA
Statistics
Matches: 649, Mismatches: 115, Indels: 69
0.78 0.14 0.08
Matches are distributed among these distances:
36 16 0.02
38 13 0.02
42 8 0.01
43 47 0.07
44 443 0.68
45 117 0.18
46 5 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (44 bp):
AAGATCTTCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
Found at i:14675201 original size:38 final size:36
Alignment explanation
Indices: 14675149--14675225 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
14675139 AGATCTGCTT
* * *
14675149 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
1 TCTTCGATCCACTTC-CCA-CAATATAGGAAGACAAGA
* *
14675187 TCTTCGATCCACTTCCTACAATATAGGAAGACAGGA
1 TCTTCGATCCACTTCCCACAATATAGGAAGACAAGA
14675223 TCT
1 TCT
14675226 GCTATCTTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 19 0.56
37 2 0.06
38 13 0.38
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (36 bp):
TCTTCGATCCACTTCCCACAATATAGGAAGACAAGA
Found at i:14675302 original size:125 final size:127
Alignment explanation
Indices: 14674963--14675404 Score: 618
Period size: 125 Copynumber: 3.4 Consensus size: 127
14674953 TGAAGATAAA
* * *
14674963 ATCTGCTACCTTTGATCTACTTCACGCCGATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
*
14675028 TCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCAATCCACTTCGCTACCAATATAGGAAGA
66 TCGCCACCAGTATGGGAAGAC-A-A---G-TATCTTCGATCCACTTC-CTACCAATATAGGAAGA
* *
14675093 TAAG
124 CAGG
* * * *
14675097 ATTTACTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACT
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
*
14675162 TCGCCACCAATATGGGAAGACAAG-ATCTTCGATCCACTTCCTA-CAATATAGGAAGACAGG
66 TCGCCACCAGTATGGGAAGACAAGTATCTTCGATCCACTTCCTACCAATATAGGAAGACAGG
14675222 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
*
14675287 TTGCCACCAGTATGGGAAGACAAGATATGCACCTTCGATCCACTTCCTACCAATATAGGAAGACA
66 TCGCCACCAGTATGGGAAGACAAG-TAT----CTTCGATCCACTTCCTACCAATATAGGAAGACA
*
14675352 GA
126 GG
* * *
14675354 ACCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAATATCTGCT
1 ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
14675405 ATTTTCAACC
Statistics
Matches: 280, Mismatches: 21, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
125 98 0.35
126 3 0.01
127 17 0.06
129 1 0.00
131 17 0.06
132 65 0.23
133 1 0.00
134 78 0.28
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (127 bp):
ATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
TCGCCACCAGTATGGGAAGACAAGTATCTTCGATCCACTTCCTACCAATATAGGAAGACAGG
Found at i:14676761 original size:15 final size:15
Alignment explanation
Indices: 14676731--14676760 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14676721 TACTTTTTCA
14676731 TGATTTTGATTCTTT
1 TGATTTTGATTCTTT
14676746 TGATTTTGATT-TTT
1 TGATTTTGATTCTTT
14676760 T
1 T
14676761 TTTTAGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.70
Consensus pattern (15 bp):
TGATTTTGATTCTTT
Found at i:14681753 original size:19 final size:19
Alignment explanation
Indices: 14681728--14681768 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14681718 AAATATACAA
14681728 ATATATAGAAAGAAAATAATT
1 ATATAT-GAAA-AAAATAATT
*
14681749 ATATATGAAAATAATAATT
1 ATATATGAAAAAAATAATT
14681768 A
1 A
14681769 CATTATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 4 0.21
21 6 0.32
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (19 bp):
ATATATGAAAAAAATAATT
Found at i:14683427 original size:27 final size:27
Alignment explanation
Indices: 14683385--14683445 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
14683375 GTGGAGCATG
* *
14683385 GGCGGCACCAAAGGTGCCTTTCTCATA
1 GGCGGCACCAAAGGTGCCATTCCCATA
* * *
14683412 GGCGGCACCGATGGTGCCATTCCCATG
1 GGCGGCACCAAAGGTGCCATTCCCATA
14683439 GGCGGCA
1 GGCGGCA
14683446 TTACCCATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (27 bp):
GGCGGCACCAAAGGTGCCATTCCCATA
Found at i:14683524 original size:14 final size:14
Alignment explanation
Indices: 14683501--14683571 Score: 63
Period size: 14 Copynumber: 4.7 Consensus size: 14
14683491 AGGAGAGGGA
14683501 AAAAAG-AAGAAAG
1 AAAAAGAAAGAAAG
14683514 AAAAAGAAAGAAAAGG
1 AAAAAGAAAG-AAA-G
14683530 AAAGGAGAGGAAAGAAAG
1 AAA--A-A-GAAAGAAAG
*
14683548 AAAAAGAAGGAAAG
1 AAAAAGAAAGAAAG
*
14683562 AAAAGGAAAG
1 AAAAAGAAAG
14683572 GAGAAGAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
13 6 0.12
14 19 0.40
15 4 0.08
16 5 0.10
18 5 0.10
19 4 0.08
20 5 0.10
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAG
Found at i:14683533 original size:5 final size:5
Alignment explanation
Indices: 14683509--14683573 Score: 53
Period size: 5 Copynumber: 13.4 Consensus size: 5
14683499 GAAAAAAGAA
* * * * * *
14683509 GAAAG AAAAA GAAAG AAAAG GAAAG GAGAG GAAA- GAAAG AAAAA G-AAG
1 GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG
*
14683557 GAAAG AAAAG GAAAG GA
1 GAAAG GAAAG GAAAG GA
14683574 GAAGAGAAAA
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
4 7 0.16
5 37 0.84
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (5 bp):
GAAAG
Found at i:14683557 original size:28 final size:28
Alignment explanation
Indices: 14683516--14683571 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
14683506 GAAGAAAGAA
* *
14683516 AAAGAAAGAAAAGGAAAGGAGAGGAAAG
1 AAAGAAAGAAAAGGAAAGAAAAGGAAAG
14683544 AAAGAAA-AAGAAGGAAAGAAAAGGAAAG
1 AAAGAAAGAA-AAGGAAAGAAAAGGAAAG
14683572 GAGAAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (28 bp):
AAAGAAAGAAAAGGAAAGAAAAGGAAAG
Found at i:14683561 original size:38 final size:40
Alignment explanation
Indices: 14683490--14683601 Score: 124
Period size: 38 Copynumber: 2.8 Consensus size: 40
14683480 GGGGGAAGAG
14683490 AAGGAGAGGGAAAAAAGAAGAAAGAAAAAGAAAGAAAAGGA
1 AAGGAGAGGGAAAAAAGAAGAAAG-AAAAGAAAGAAAAGGA
*
14683531 AAGGAGA-GGAAAGAAAGAA-AAAG-AAGGAAAGAAAAGGA
1 AAGGAGAGGGAAA-AAAGAAGAAAGAAAAGAAAGAAAAGGA
* *
14683569 AAGGAGAAGAGAAAAATAAAAG-AAGAAGAAGAA
1 AAGGAG-AGGGAAAAA-AGAAGAAAGAA-AAGAA
14683602 GAGGGGAAGA
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
38 20 0.33
39 3 0.05
40 19 0.32
41 14 0.23
42 4 0.07
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (40 bp):
AAGGAGAGGGAAAAAAGAAGAAAGAAAAGAAAGAAAAGGA
Found at i:14683567 original size:10 final size:10
Alignment explanation
Indices: 14683509--14683571 Score: 69
Period size: 10 Copynumber: 6.5 Consensus size: 10
14683499 GAAAAAAGAA
*
14683509 GAAAGAAAAA
1 GAAAGAAAAG
14683519 GAAAGAAAAG
1 GAAAGAAAAG
* *
14683529 GAAAGGAGAG
1 GAAAGAAAAG
14683539 GAAAG-AAA-
1 GAAAGAAAAG
14683547 GAAA-AAGAAG
1 GAAAGAA-AAG
14683557 GAAAGAAAAG
1 GAAAGAAAAG
14683567 GAAAG
1 GAAAG
14683572 GAGAAGAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
8 5 0.11
9 4 0.09
10 34 0.76
11 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:14683666 original size:42 final size:42
Alignment explanation
Indices: 14683620--14683704 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
14683610 GAAGAAAAAA
14683620 GAAAGAAAAAAAGGTAATTTTTATTATTAATTTTAATTTTTC
1 GAAAGAAAAAAAGGTAATTTTTATTATTAATTTTAATTTTTC
14683662 GAAAGAAAAAAAGGTAATTTTTATTATTAATTTTAATTTTTC
1 GAAAGAAAAAAAGGTAATTTTTATTATTAATTTTAATTTTTC
14683704 G
1 G
14683705 TAATATTTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (42 bp):
GAAAGAAAAAAAGGTAATTTTTATTATTAATTTTAATTTTTC
Found at i:14684773 original size:285 final size:285
Alignment explanation
Indices: 14684033--14684893 Score: 1512
Period size: 284 Copynumber: 3.0 Consensus size: 285
14684023 TGAAATAAAG
* *
14684033 TAAAATTATAAAATTAGAAATTATGATATTTTTAAAGTAATAAAATGTGGAGAAAAAAATACGAA
1 TAAATTTATAAAATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAA
* *
14684098 GAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTATAAAAATTCAAAAATAATTAATACAAATA
66 GAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATA
14684163 TTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAA
131 TTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAA
*
14684228 AGTAATAAAATTCAGGAAAATAATACAAGTAAAGGGCAGGAATAAGGGTTTTTTT-ACACTAAAT
196 AGTAATAAAATTCAGGAAAATAATACGAGTAAAGGGCAGGAATAAGGGTTTTTTTGACACTAAAT
14684292 TAATTTAAAAAACACACTAAATTAA
261 TAATTTAAAAAACACACTAAATTAA
* *
14684317 TAAATTTATAAAATTAGAAATTATGATATTTTTAAAGTAATAAAATACAGAGAAAAAAATACGAA
1 TAAATTTATAAAATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAA
*
14684382 GAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTTTAAGAATTCAGAAATAATTAATACAAATA
66 GAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATA
*
14684447 TTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACAAAAATAATATTTTTTATTGAA
131 TTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAA
* * * *
14684512 AGTAACAAAATTCGGGAAAATAATACGAGCAAAGGGCCGGAATAAGGGTTTTTTTGACACTAAAT
196 AGTAATAAAATTCAGGAAAATAATACGAGTAAAGGGCAGGAATAAGGGTTTTTTTGACACTAAAT
* *
14684577 TAATTT-AAAAACACAATAAATTTA
261 TAATTTAAAAAACACACTAAATTAA
*
14684601 TAAATTTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATATGA
1 TAAATTTATAAAATTAGAAATTATGATA-TTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGA
*
14684666 AGAAATGACCGAAGTAAGAGTGTTTTACTAATTTTTTTAAAAATTCAGAAATAATTAATACAAAT
65 AGAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAAT
14684731 ATTT-AGAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTG
130 ATTTCA-AACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTG
* *
14684795 AAAATAATAAAATTCAGGAAAATAATACGAGTAACGGGCAGGAATAAGGGTTTTTTTGACACTAA
194 AAAGTAATAAAATTCAGGAAAATAATACGAGTAAAGGGCAGGAATAAGGGTTTTTTTGACACTAA
14684860 ATTAATTTAAAAAACACACTAAATTAA
259 ATTAATTTAAAAAACACACTAAATTAA
14684887 TAAATTT
1 TAAATTT
14684894 CAAACATAAT
Statistics
Matches: 544, Mismatches: 29, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
284 282 0.52
285 239 0.44
286 23 0.04
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (285 bp):
TAAATTTATAAAATTAGAAATTATGATATTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAA
GAAATGACCGAAGTAAGAGTGTTTTACTAAATTTTTTAAAAATTCAGAAATAATTAATACAAATA
TTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAA
AGTAATAAAATTCAGGAAAATAATACGAGTAAAGGGCAGGAATAAGGGTTTTTTTGACACTAAAT
TAATTTAAAAAACACACTAAATTAA
Found at i:14691777 original size:27 final size:27
Alignment explanation
Indices: 14691737--14691797 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
14691727 TAACACGAAT
*
14691737 GGTGCCGCCCATGGGAATGGCACCATC
1 GGTGCCGCCAATGGGAATGGCACCATC
14691764 GGTGCCGCCAATGGGAATGGCACCATC
1 GGTGCCGCCAATGGGAATGGCACCATC
14691791 GGTGCCG
1 GGTGCCG
14691798 TCTATCAGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (27 bp):
GGTGCCGCCAATGGGAATGGCACCATC
Found at i:14692804 original size:44 final size:44
Alignment explanation
Indices: 14692712--14692806 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
14692702 TGCCATTTTG
* * *
14692712 GCTTGCACCCACTCGGGCTTGCATTTAGGCTATCGGCCACTTTG
1 GCTTGCACCCACTCGGGCTTGCATTTAGCCTATCGGCCACCTTA
*
14692756 GCTTGCATCCA-TACGGGCTTGCATTTAGACCGT-TC-GCCACCTTA
1 GCTTGCACCCACT-CGGGCTTGCATTTAG-CC-TATCGGCCACCTTA
14692800 GCTTGCA
1 GCTTGCA
14692807 ATTCAACATG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
43 1 0.02
44 39 0.89
45 3 0.07
46 1 0.02
ACGTcount: A:0.16, C:0.32, G:0.23, T:0.29
Consensus pattern (44 bp):
GCTTGCACCCACTCGGGCTTGCATTTAGCCTATCGGCCACCTTA
Found at i:14692941 original size:46 final size:47
Alignment explanation
Indices: 14692873--14692996 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 47
14692863 CACTAGGCTG
* * *
14692873 AGCTCGCACCTTTGACAGGCTCGCATTTTTGCTTACTGTCTTCAATA
1 AGCTCGCAACTTTGACAGGCTCGCATTTTTGCTTACTGTCATCAACA
* * * ** * *
14692920 AGCTCTC-ATTTTGACAAGCTCGCACCTTGGCTTATTGTCATCAACA
1 AGCTCGCAACTTTGACAGGCTCGCATTTTTGCTTACTGTCATCAACA
14692966 AGCTCGCAACTTT-ACAGGGCTCGCATTTTTG
1 AGCTCGCAACTTTGACA-GGCTCGCATTTTTG
14692997 TTGAGCTCGT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
46 39 0.66
47 20 0.34
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (47 bp):
AGCTCGCAACTTTGACAGGCTCGCATTTTTGCTTACTGTCATCAACA
Found at i:14693085 original size:16 final size:16
Alignment explanation
Indices: 14693061--14693094 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14693051 CTCACACATC
* *
14693061 TTGCTGAGCTTGTACT
1 TTGCAGAGCTTGCACT
14693077 TTGCAGAGCTTGCACT
1 TTGCAGAGCTTGCACT
14693093 TT
1 TT
14693095 TGCTTTCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41
Consensus pattern (16 bp):
TTGCAGAGCTTGCACT
Found at i:14698917 original size:16 final size:16
Alignment explanation
Indices: 14698898--14698929 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14698888 ATAAATAAAG
14698898 AAAAAGCGGATTCTTT
1 AAAAAGCGGATTCTTT
*
14698914 AAAACGCGGATTCTTT
1 AAAAAGCGGATTCTTT
14698930 TTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (16 bp):
AAAAAGCGGATTCTTT
Found at i:14704604 original size:25 final size:25
Alignment explanation
Indices: 14704576--14704668 Score: 100
Period size: 25 Copynumber: 3.7 Consensus size: 25
14704566 TTTCGAGCCA
14704576 TATAACGGGAAGCTCATGTAAGCTG
1 TATAACGGGAAGCTCATGTAAGCTG
* *
14704601 TATAACGGGAAGCTCATGTGAGCTA
1 TATAACGGGAAGCTCATGTAAGCTG
* * * *
14704626 AATATCGAGAAGCTCAAG-AGAGCTG
1 TATAACGGGAAGCTCATGTA-AGCTG
14704651 T-TAATCGGGAAGCTCATG
1 TATAA-CGGGAAGCTCATG
14704669 AGAGTTGTGG
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 2 0.04
25 52 0.96
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (25 bp):
TATAACGGGAAGCTCATGTAAGCTG
Found at i:14716111 original size:34 final size:31
Alignment explanation
Indices: 14716040--14716121 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 31
14716030 TATTTATAGG
* *
14716040 AAAGATATATGATA-ATTCCTAAATATATGA
1 AAAGATATATAATATATTCCTAAATATATCA
*
14716070 AAAGATATATAATATATTCTTAAATATATAACCA
1 AAAGATATATAATATATTCCTAAATATAT---CA
14716104 AAAGATATATAATATATT
1 AAAGATATATAATATATT
14716122 TAGATATTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
30 13 0.29
31 13 0.29
34 19 0.42
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (31 bp):
AAAGATATATAATATATTCCTAAATATATCA
Found at i:14735691 original size:44 final size:43
Alignment explanation
Indices: 14735641--14736317 Score: 285
Period size: 44 Copynumber: 15.7 Consensus size: 43
14735631 TAACAGATCG
*
14735641 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
* *
14735685 AGTCTTATC-CTCCTAAAGTTGCGGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-GGCA
* * *
14735730 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAGGC-A
* * * * *
14735773 TAATCCTATCTCGCTGAAGTTGCAGT-GAGCAGATTGAA-A-CCTTA
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAGGC--A
* * * * * * *
14735817 GGTCTTATCTCTCTGAAGTTGCAG-AGAGCA-AAT-CGCA-TCT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
*
14735857 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
* *
14735901 AGTCTTATC-CTCCTGAAGTTGCAGT-AAGGCGGACTGAAGAGGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-GGCA
* * *
14735946 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AGCCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAG-GC-A
* * *** * * * ** *
14735990 AATCCTATCTAGATGAAGTTGCAGT-AAGCGGATTAA-AACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAGGC-A
** * * * * ***
14736032 AGATCCCATCTCTCTAAAGTTGCAG-AGAGCAGA-T-CGTA-TTT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
** * * ** *
14736073 AGTCTTATCTTGCTGAAGTTGCAGT-GAGCGGATTAA-AACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAGGC-A
* * * * *
14736115 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCA-TCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
14736156 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AGGCA
*
14736200 AGTCTTATC-CTCCTGAAGTAGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-GGCA
* * * * * *
14736245 AATCTTATCTCACTGAAGTTGCAGTGAAGTAGATTAA-AGTCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAGGC-A
* * *
14736288 TAATCCTATCTTCCTGAAGTTGCAGTGGAG
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAG
14736318 TAGATTAAAA
Statistics
Matches: 495, Mismatches: 88, Indels: 100
0.72 0.13 0.15
Matches are distributed among these distances:
40 66 0.13
41 19 0.04
42 21 0.04
43 114 0.23
44 169 0.34
45 99 0.20
46 7 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAGGCA
Found at i:14735794 original size:89 final size:87
Alignment explanation
Indices: 14735643--14735810 Score: 205
Period size: 89 Copynumber: 1.9 Consensus size: 87
14735633 ACAGATCGAG
* * * *
14735643 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTAAAGTTGCG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAG-AGCCAAATCCTATCCTCCTAAAGTTGCA
14735708 GTGAGGCAGACTGAAGATGGCAAA
65 GTGA-GCAGACTGAAGATGGCAAA
* * *
14735732 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AGCCGATAATCCTAT-CTCGCTGAAGTTG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAGCC-A-AATCCTATCCTC-CTAAAGTTG
*
14735795 CAGTGAGCAGATTGAA
63 CAGTGAGCAGACTGAA
14735811 ACCTTAGGTC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
87 3 0.04
88 13 0.19
89 52 0.76
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (87 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAGCCAAATCCTATCCTCCTAAAGTTGCAG
TGAGCAGACTGAAGATGGCAAA
Found at i:14736031 original size:216 final size:216
Alignment explanation
Indices: 14735641--14736098 Score: 711
Period size: 216 Copynumber: 2.1 Consensus size: 216
14735631 TAACAGATCG
*
14735641 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTAAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTAAAGTTG
* * *
14735706 CGGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
66 CAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * * * * ** *
14735771 GATAATCCTATCTCGCTGAAGTTGCAGTGAGCAGATTGAAACCTTAGGTCTTATCTCTCTGAAGT
131 GATAATCCTATCTAGATGAAGTTGCAGTAAGCAGATTAAAACCTTAGATCCCATCTCTCTAAAGT
14735836 TGCAGAGAGCAAATCGCATCT
196 TGCAGAGAGCAAATCGCATCT
* *
14735857 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTAAAGTTG
*
14735922 CAGTAAGGCGGACTGAAGAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
66 CAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-C
*
14735987 CGA-AATCCTATCTAGATGAAGTTGCAGTAAGCGGATTAAAACCTTAGATCCCATCTCTCTAAAG
130 CGATAATCCTATCTAGATGAAGTTGCAGTAAGCAGATTAAAACCTTAGATCCCATCTCTCTAAAG
* * *
14736051 TTGCAGAGAGCAGATCGTATTT
195 TTGCAGAGAGCAAATCGCATCT
**
14736073 AGTCTTATCTTGCTGAAGTTGCAGTG
1 AGTCTTATCTCCCTGAAGTTGCAGTG
14736099 AGCGGATTAA
Statistics
Matches: 219, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
216 215 0.98
217 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (216 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTAAAGTTG
CAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
GATAATCCTATCTAGATGAAGTTGCAGTAAGCAGATTAAAACCTTAGATCCCATCTCTCTAAAGT
TGCAGAGAGCAAATCGCATCT
Found at i:14736173 original size:40 final size:40
Alignment explanation
Indices: 14736039--14736395 Score: 157
Period size: 44 Copynumber: 8.4 Consensus size: 40
14736029 CTTAGATCCC
* * *
14736039 ATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCTT
1 ATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTAGTCTT
* * ** *
14736079 ATCT-TGCTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTT
1 ATCTCT-CTGAAGTTGCAGAGAGCAGA-TCGAATC-TAG-TCTT
*
14736122 ATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTT
1 ATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTAGTCTT
* * * *
14736162 ATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGTAGGCAAGTCTT
1 ATCTCTCTGAAGTTGCAG-AGAGCAGATCGAA-T---CTAGTCTT
* * * *
14736206 ATC-CTCCTGAAGTAGCAGTGAGGCAGA-CTGAAGATGGCAAATCTT
1 ATCTCT-CTGAAGTTGCAGAGA-GCAGATC-G-A-AT--CTAGTCTT
* * * ** * *
14736251 ATCTCACTGAAGTTGCAGTGAAGTAGATTAAAGTCGATAATCCT
1 ATCTCTCTGAAGTTGCAGAG-AGCAGATCGAA-TC--TAGTCTT
* * ** * *
14736295 ATCT-TCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCTT
1 ATCTCT-CTGAAGTTGCAG-AGAGCAGA-TCGAATC-TAG-TCTT
* * *
14736339 ATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCTT
1 ATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTAGTCTT
14736379 ATCTCTCTGAAGTTGCA
1 ATCTCTCTGAAGTTGCA
14736396 CCAGGAGTGG
Statistics
Matches: 242, Mismatches: 49, Indels: 52
0.71 0.14 0.15
Matches are distributed among these distances:
39 1 0.00
40 64 0.26
41 15 0.06
42 9 0.04
43 37 0.15
44 76 0.31
45 35 0.14
46 4 0.02
47 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (40 bp):
ATCTCTCTGAAGTTGCAGAGAGCAGATCGAATCTAGTCTT
Found at i:14736181 original size:83 final size:83
Alignment explanation
Indices: 14736003--14736181 Score: 286
Period size: 83 Copynumber: 2.2 Consensus size: 83
14735993 CCTATCTAGA
*
14736003 TGAAGTTGCAGTAAGCGGATTAAAACCTTAGATCCCATCTCTCTAAAGTTGCAGAGAGCAGATCG
1 TGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCCCATCTCTCTAAAGTTGCAGAGAGCAGATCG
* * **
14736068 TATTTAGTCTTATCTTGC
66 CATCTAGTCTTATCTCCC
** *
14736086 TGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCG
1 TGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCCCATCTCTCTAAAGTTGCAGAGAGCAGATCG
14736151 CATCTAGTCTTATCTCCC
66 CATCTAGTCTTATCTCCC
14736169 TGAAGTTGCAGTG
1 TGAAGTTGCAGTG
14736182 GAGCAGACTA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 88 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (83 bp):
TGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCCCATCTCTCTAAAGTTGCAGAGAGCAGATCG
CATCTAGTCTTATCTCCC
Found at i:14736187 original size:299 final size:300
Alignment explanation
Indices: 14735779--14736395 Score: 988
Period size: 299 Copynumber: 2.1 Consensus size: 300
14735769 CCGATAATCC
* * *
14735779 TATCTCGCTGAAGTTGCAGTGAGCAGATTGAAACCTTAGGTCTTATCTCTCTGAAGTTGCAGAGA
1 TATCTTGCTGAAGTTGCAGTGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGA
*
14735844 GCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAGGCAAGTCTTAT
66 GCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTAT
* * * *
14735909 CCTCCTGAAGTTGCAGTAAGGCGGACTGAAGAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGGA
131 CCTCCTGAAGTAGCAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCACTGAAGTTGCAGTGAA
* *
14735974 GCAGATTAAAGCCCGA-AATCCTATCTAGATGAAGTTGCAGT-AAGCGGATTAAAACCTTAGATC
196 GCAGATTAAAG-CCGATAATCCTATCTACATGAAGTTGCAGTGAAGCAGATTAAAACCTTAGATC
14736037 CCATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCT
260 CCATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCT
*
14736078 TATCTTGCTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGA
1 TATCTTGCTGAAGTTGCAGTGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGA
*
14736143 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTAT
66 GCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTAT
* *
14736208 CCTCCTGAAGTAGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCACTGAAGTTGCAGTGAA
131 CCTCCTGAAGTAGCAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCACTGAAGTTGCAGTGAA
* * * * * * * *
14736273 GTAGATTAAAGTCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCT
196 GCAGATTAAAGCCGATAATCCTATCTACATGAAGTTGCAGTGAAGCAGATTAAAACCTTAGATCC
*
14736338 TATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCT
261 CATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCT
14736378 TATCTCT-CTGAAGTTGCA
1 TATCT-TGCTGAAGTTGCA
14736396 CCAGGAGTGG
Statistics
Matches: 292, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
298 3 0.01
299 215 0.74
300 73 0.25
301 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (300 bp):
TATCTTGCTGAAGTTGCAGTGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGA
GCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTAT
CCTCCTGAAGTAGCAGTAAGGCAGACTGAAGAGGGCAAATCTTATCTCACTGAAGTTGCAGTGAA
GCAGATTAAAGCCGATAATCCTATCTACATGAAGTTGCAGTGAAGCAGATTAAAACCTTAGATCC
CATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAGTCT
Found at i:14738078 original size:14 final size:14
Alignment explanation
Indices: 14738059--14738122 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
14738049 TGATGTTGGC
14738059 ATATTTTTTATTTG
1 ATATTTTTTATTTG
* *
14738073 ATATTTTGTATGTG
1 ATATTTTTTATTTG
14738087 AT-TATTTTTATTATG
1 ATAT-TTTTTATT-TG
14738102 TATATTCATTTTATTT-
1 -ATATT--TTTTATTTG
14738118 ATATT
1 ATATT
14738123 ATTTCTATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 20 0.50
15 7 0.17
16 3 0.08
17 2 0.05
18 7 0.17
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.66
Consensus pattern (14 bp):
ATATTTTTTATTTG
Found at i:14740416 original size:27 final size:26
Alignment explanation
Indices: 14740386--14740437 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14740376 AGATTGTTAA
14740386 AAATTCTTCTAAAAG-AAAACTCAAGAG
1 AAATTC-T-TAAAAGAAAAACTCAAGAG
*
14740413 AAATTCTTGAAAGAAAAACTCAAGA
1 AAATTCTTAAAAGAAAAACTCAAGA
14740438 AGAATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 12 0.52
27 6 0.26
ACGTcount: A:0.54, C:0.13, G:0.12, T:0.21
Consensus pattern (26 bp):
AAATTCTTAAAAGAAAAACTCAAGAG
Found at i:14740456 original size:27 final size:26
Alignment explanation
Indices: 14740401--14740456 Score: 60
Period size: 27 Copynumber: 2.1 Consensus size: 26
14740391 CTTCTAAAAG
* *
14740401 AAAACTCAAGAGAAATTCTTGAAAGA
1 AAAACTCAAGAGAAATTATTGAAACA
*
14740427 AAAACTCAAGAAGAATTTATT-AACACA
1 AAAACTCAAG-AGAAATTATTGAA-ACA
14740454 AAA
1 AAA
14740457 GAGAATTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.57, C:0.12, G:0.11, T:0.20
Consensus pattern (26 bp):
AAAACTCAAGAGAAATTATTGAAACA
Found at i:14752716 original size:80 final size:80
Alignment explanation
Indices: 14752577--14752743 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 80
14752567 GATCGTGCGT
* * *
14752577 GAACCCTTATGCGAACCTCCTGTTTGCATATGAGAACCCTTGCATGAAATCCCCCATAGGAGAAG
1 GAACCCTTATGCGAACCCCCTATTTGCATATGAGAACCCTTGCATAAAATCCCCCATAGGAGAA-
14752642 CCC-CTTGATGCATGC
65 CCCACTTGATGCATGC
* * * * ** * *
14752657 GAACCCTTATGTGAACCCCCTATTTGCATGTGCGAACGCTTGCATAAAATCTTCTATAGGCGAAC
1 GAACCCTTATGCGAACCCCCTATTTGCATATGAGAACCCTTGCATAAAATCCCCCATAGGAGAAC
*
14752722 CCACTTGATGCATGT
66 CCACTTGATGCATGC
14752737 GAACCCT
1 GAACCCT
14752744 ATATTTGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 3 0.04
80 71 0.96
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (80 bp):
GAACCCTTATGCGAACCCCCTATTTGCATATGAGAACCCTTGCATAAAATCCCCCATAGGAGAAC
CCACTTGATGCATGC
Found at i:14752749 original size:68 final size:65
Alignment explanation
Indices: 14752677--14752879 Score: 192
Period size: 68 Copynumber: 3.0 Consensus size: 65
14752667 GTGAACCCCC
* ** *
14752677 TATTTGCATGTGCGAACGCTTGCATAAAATCTTCTATAGGCGAACCCACTTGATGCATGTGAACC
1 TATTTGCATGTGCAAAC-CTTGCATAAAATCCCCTATAGGCGAACCC-CTTGATGCATGCGAACC
14752742 CT
64 CT
* * *
14752744 ATATTTGCATGTGTAAAACCTTGCATGAAAA-CCCCTATAGGCGAATCCTCTTGATGTATGCGAA
1 -TATTTGCATGTG-CAAACCTTGCAT-AAAATCCCCTATAGGCGAA-CCCCTTGATGCATGCGAA
14752808 CCTCCT
62 -C-CCT
* * * * * *
14752814 TGTTTGCATGTGCAAACTATTGTATGAAATCCCCTATAGGTGAACCCCTTTAATGCATGCGAACC
1 TATTTGCATGTGCAAAC-CTTGCATAAAATCCCCTATAGGCGAACCCC-TTGATGCATGCGAACC
14752879 C
64 C
14752880 CAAAAATAAA
Statistics
Matches: 111, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
67 2 0.02
68 55 0.50
69 51 0.46
70 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (65 bp):
TATTTGCATGTGCAAACCTTGCATAAAATCCCCTATAGGCGAACCCCTTGATGCATGCGAACCCT
Found at i:14752850 original size:69 final size:68
Alignment explanation
Indices: 14752710--14752879 Score: 184
Period size: 69 Copynumber: 2.5 Consensus size: 68
14752700 ATAAAATCTT
* *
14752710 CTATAGGCGAACCCACTTGATGCATGTGAACCCTATATTTGCATGTGTAAAACCTTGCATGAAAA
1 CTATAGGCGAACCCACTTGATGCATGCGAACCCTATATTTGCATGTGTAAAACATTGCATGAAAA
14752775 CCC
66 CCC
* * * * * *
14752778 CTATAGGCGAATCCTCTTGATGTATGCGAACCTCCT-TGTTTGCATGTG-CAAACTATTGTATGA
1 CTATAGGCGAACCCACTTGATGCATGCGAA-C-CCTATATTTGCATGTGTAAAAC-ATTGCATGA
*
14752841 AATCCC
63 AAACCC
* *
14752847 CTATAGGTGAACCC-CTTTAATGCATGCGAACCC
1 CTATAGGCGAACCCAC-TTGATGCATGCGAACCC
14752880 CAAAAATAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
67 2 0.02
68 32 0.38
69 48 0.56
70 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (68 bp):
CTATAGGCGAACCCACTTGATGCATGCGAACCCTATATTTGCATGTGTAAAACATTGCATGAAAA
CCC
Found at i:14758038 original size:22 final size:23
Alignment explanation
Indices: 14758000--14758058 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
14757990 GAAAATGAAG
*
14758000 AAAAA-AAAGAAAGTTAAAAAAAT
1 AAAAAGAAA-AAAATTAAAAAAAT
** *
14758023 -AAAAGAAAAAAATTAAATTACT
1 AAAAAGAAAAAAATTAAAAAAAT
14758045 AAAAAGAAAAAAAT
1 AAAAAGAAAAAAAT
14758059 ATAGGGATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (23 bp):
AAAAAGAAAAAAATTAAAAAAAT
Found at i:14760140 original size:69 final size:69
Alignment explanation
Indices: 14760029--14760167 Score: 217
Period size: 69 Copynumber: 2.0 Consensus size: 69
14760019 ATCTTCTAAT
* *
14760029 GGCAACTTCACTTAATATCTTTGAGGTCGACACATTTCAATTTTATATACTAATCTTTCAAATTT
1 GGCAACTTCACTTAACATCTTTGAGGTCGACACATTTCAATTTTATATACTAACCTTTCAAATTT
14760094 TGTA
66 TGTA
* * *
14760098 GGCAACTTCACTTAACATCTTTTGA-GTTGGCATATTTCAATTTTATATACTAACCTTTCAAATT
1 GGCAACTTCACTTAACATC-TTTGAGGTCGACACATTTCAATTTTATATACTAACCTTTCAAATT
14760162 TTGTA
65 TTGTA
14760167 G
1 G
14760168 TTGGTTGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
69 59 0.92
70 5 0.08
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.42
Consensus pattern (69 bp):
GGCAACTTCACTTAACATCTTTGAGGTCGACACATTTCAATTTTATATACTAACCTTTCAAATTT
TGTA
Found at i:14772433 original size:20 final size:21
Alignment explanation
Indices: 14772408--14772447 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
14772398 AATTTTAAAA
14772408 TATTTTTAAAAT-AATTTTTT
1 TATTTTTAAAATAAATTTTTT
14772428 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAATAAATTTTT
14772448 AGTGTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTT
Found at i:14772455 original size:20 final size:20
Alignment explanation
Indices: 14772412--14772455 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14772402 TTAAAATATT
* *
14772412 TTTAAAATAATTTTTTTATT
1 TTTAAAATAATATTTTTATG
14772432 TTTAAAATAA-ATTTTTAGTG
1 TTTAAAATAATATTTTTA-TG
14772452 TTTA
1 TTTA
14772456 TTAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTAAAATAATATTTTTATG
Found at i:14773159 original size:37 final size:37
Alignment explanation
Indices: 14773117--14773631 Score: 305
Period size: 37 Copynumber: 14.1 Consensus size: 37
14773107 GAATACTGAA
* *
14773117 TATACTAAACGTGCTCAAAAGAGCAATGTCTACTAAT
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
* * **
14773154 TATACTAAGA-GT--TGAAACGAGTGATATCTACTAAT
1 TATACTAA-ATGTGCTCAAAAGAGCAATATCTACTAAT
* * *
14773189 TATACTAAATGGGCTCAAACA-AGCAATGTCTACTGAT
1 TATACTAAATGTGCTCAAA-AGAGCAATATCTACTAAT
* *
14773226 TATACTGAATGTGCTCAAATGAGCAATATCTAC---T
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
*
14773260 TA-AC---A--TGCTCAAAAGAGCAATGTCTACTAAT
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
* ** *
14773291 TATACTAAAAGTTGCTCAAACA-AGTGATATCCACTAAT
1 TATACTAAATG-TGCTCAAA-AGAGCAATATCTACTAAT
* * * * * *
14773329 TATACTGAATGAGATCAAATGAGCAATGTCTACTGAT
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
* * * * *
14773366 TATATTGAATGTGCTCAAACGAGAAATATCTATTGAA-
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACT-AAT
* * * *
14773403 TCTACTGAATGTGCTCAAAAGAGCAATGTCTACTGAT
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
* * *
14773440 TATACTGAAA-GTTGCTCAAACA-AGCAATACCCACTGAT
1 TATACT-AAATG-TGCTCAAA-AGAGCAATATCTACTAAT
* * * * *
14773478 TACATTGAATGGGCTCAAACGAGCAATATCTACTGAA-
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACT-AAT
* * * *
14773515 TATACTAAACGTGCTCAAAAGAGCAATGTCTATTGAT
1 TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
* ** * * *
14773552 TATACTGAAA-GTTGCTCAAATGAGTGATACCCACTGAT
1 TATACT-AAATG-TGCTCAAAAGAGCAATATCTACTAAT
* * * *
14773590 TATACTGAATAG-GCTCAAATGAGCAATATGTACTGAT
1 TATACTAAAT-GTGCTCAAAAGAGCAATATCTACTAAT
14773627 TATAC
1 TATAC
14773632 GGAATGCATG
Statistics
Matches: 365, Mismatches: 82, Indels: 62
0.72 0.16 0.12
Matches are distributed among these distances:
28 20 0.05
30 1 0.00
31 3 0.01
32 2 0.01
33 2 0.01
34 4 0.01
35 28 0.08
36 2 0.01
37 212 0.58
38 88 0.24
39 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (37 bp):
TATACTAAATGTGCTCAAAAGAGCAATATCTACTAAT
Found at i:14773478 original size:112 final size:111
Alignment explanation
Indices: 14773360--14773631 Score: 382
Period size: 112 Copynumber: 2.4 Consensus size: 111
14773350 AGCAATGTCT
* * * * *
14773360 ACTGATTATATTGAATGTGCTCAAACGAGAAATATCTATTGAATCTACTGAATGTGCTCAAAAGA
1 ACTGATTATATTGAATG-GCTCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGA
14773425 GCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCC
65 GCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCC
*
14773472 ACTGATTACATTGAATGGGCTCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGA
1 ACTGATTATATTGAAT-GGCTCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGA
* ** **
14773537 GCAATGTCTATTGATTATACTGAAAGTTGCTCAAATGAGTGATACCC
65 GCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCC
* * * *
14773584 ACTGATTATACTGAATAGGCTCAAATGAGCAATATGTACTGATTATAC
1 ACTGATTATATTGAAT-GGCTCAAACGAGCAATATCTACTGAATATAC
14773632 GGAATGCATG
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
112 141 0.99
113 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (111 bp):
ACTGATTATATTGAATGGCTCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGAG
CAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCC
Found at i:14773529 original size:149 final size:150
Alignment explanation
Indices: 14773265--14773598 Score: 409
Period size: 149 Copynumber: 2.2 Consensus size: 150
14773255 CTACTTAACA
* * ** *
14773265 TGCTCAAAAGAGCAATGTCTACTAATTATACTAAAAGTTGCTCAAACAAGTGATATCCACTAATT
1 TGCTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCCACTAATT
* * * * * * * *
14773330 ATACTGAATGAGATCAAATGAGCAATGTCTACTGATTATATTGAATGTGCTCAAACGAGAAATAT
66 ACACTGAATGAGATCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGAGAAATAT
* *
14773395 CTATTGAATCTACTGAATG-
131 CTATTGAATATACTGAAAGT
*
14773414 TGCTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCCACTGATT
1 TGCTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCCACTAATT
* * * * *
14773479 ACATTGAATGGGCTCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGAGCAATGT
66 ACACTGAATGAGATCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGAGAAATAT
*
14773544 CTATTGATTATACTGAAAGT
131 CTATTGAATATACTGAAAGT
* ** ** *
14773564 TGCTCAAATGAGTGATACCCACTGATTATACTGAA
1 TGCTCAAAAGAGCAATGTCTACTGATTATACTGAA
14773599 TAGGCTCAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
149 127 0.81
150 29 0.19
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.28
Consensus pattern (150 bp):
TGCTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCAATACCCACTAATT
ACACTGAATGAGATCAAACGAGCAATATCTACTGAATATACTAAACGTGCTCAAAAGAGAAATAT
CTATTGAATATACTGAAAGT
Found at i:14776485 original size:66 final size:66
Alignment explanation
Indices: 14776405--14776554 Score: 192
Period size: 66 Copynumber: 2.3 Consensus size: 66
14776395 CAATATCTCA
* * * * * *
14776405 TTCAAGAGCTTGGGAAGACTCGATATCTCATTCAGGATCTTGGGATTGAGAAGACCTGATACCTT
1 TTCAGGAGCTTGGGAAGAATCGATATCGCATGCAGGAGCTTGGGATTGAGAAGACCTGATACCTC
14776470 G
66 G
* *** *
14776471 TTCAGGAGCTTGGGAAGAATTGATATCGCATGCAGGAGCTTGGGATTGAGAAGTGTTGATATCTC
1 TTCAGGAGCTTGGGAAGAATCGATATCGCATGCAGGAGCTTGGGATTGAGAAGACCTGATACCTC
14776536 G
66 G
*
14776537 TTTAGGAGCTTGGGAAGA
1 TTCAGGAGCTTGGGAAGA
14776555 TCCGGTATTT
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 72 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (66 bp):
TTCAGGAGCTTGGGAAGAATCGATATCGCATGCAGGAGCTTGGGATTGAGAAGACCTGATACCTC
G
Found at i:14777115 original size:23 final size:23
Alignment explanation
Indices: 14777070--14777120 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14777060 ATATTTAATT
* *
14777070 ATTATTAAATTTATATAATTAAA
1 ATTATTAAATTTATAGAAGTAAA
*
14777093 TTTATTAAATTTATAGAAGTAAA
1 ATTATTAAATTTATAGAAGTAAA
14777116 ATTAT
1 ATTAT
14777121 CTATTGAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
ATTATTAAATTTATAGAAGTAAA
Found at i:14784655 original size:3 final size:3
Alignment explanation
Indices: 14784649--14784674 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14784639 CGATGGCTTT
14784649 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
14784675 TTCTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:14789993 original size:19 final size:17
Alignment explanation
Indices: 14789969--14790012 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
14789959 TATCAAGCCC
*
14789969 AAAAATAAATTATATTTAT
1 AAAAATAAATTA-AGTT-T
*
14789988 AAAAATAATTTAAGTTT
1 AAAAATAAATTAAGTTT
14790005 AAAAATAA
1 AAAAATAA
14790013 TCAATAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAAATAAATTAAGTTT
Found at i:14790626 original size:109 final size:109
Alignment explanation
Indices: 14790268--14790645 Score: 524
Period size: 115 Copynumber: 3.4 Consensus size: 109
14790258 CAATTTTTTT
* * *
14790268 TTTACTGTTGGGTGCTGGCCATTGACAGGCCAGCA-CCAAATTTTTTTTTTTTTTACTTTTTTCA
1 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA--ATTTTTTTTTTTACTTTTTTCG
* *
14790332 TATATTTATATTTGATTCTGACACGAAAAAAAAATTCAAAAAAAAAAA
64 TATATTTATATCTGATTCTGACACGAAAAAAAAATTC--AATAAAAAA
*
14790380 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCTAAAATTTTTTTTTTTACTTTTTTCGTA
1 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTACTTTTTTCGTA
***
14790445 TATTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAATAAAAAAAAA
66 TATTTATATCTGATTCTGACACG--AAAAAAA-AATTCAAT---AAAAAA
*
14790495 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTACATTTTTCGTA
1 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTACTTTTTTCGTA
*****
14790560 TATTTATATCTGATTCTGACACGAAAAAAAAATTCAATATTTTT
66 TATTTATATCTGATTCTGACACGAAAAAAAAATTCAATAAAAAA
14790604 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
1 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
14790646 AAAAAAAATT
Statistics
Matches: 240, Mismatches: 19, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
109 43 0.18
111 44 0.18
112 41 0.17
113 18 0.08
114 2 0.01
115 92 0.38
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (109 bp):
TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTTTACTTTTTTCGTA
TATTTATATCTGATTCTGACACGAAAAAAAAATTCAATAAAAAA
Found at i:14792194 original size:22 final size:22
Alignment explanation
Indices: 14792160--14792214 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14792150 CTACTGTTTT
*
14792160 AATATACTATTATAAAATTTGA
1 AATATACTGTTATAAAATTTGA
* *
14792182 AATGTACTGTTATAAAATTTGT
1 AATATACTGTTATAAAATTTGA
14792204 AATATACTGTT
1 AATATACTGTT
14792215 TTAATATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (22 bp):
AATATACTGTTATAAAATTTGA
Found at i:14793735 original size:25 final size:25
Alignment explanation
Indices: 14793714--14793762 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
14793704 CGAATTAGAG
14793714 AAACAAATTGCATGTATCATTATCA
1 AAACAAATTGCATGTATCATTATCA
*
14793739 AAACAAATTGCATGTATCACTATC
1 AAACAAATTGCATGTATCATTATC
14793763 TTCAGTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (25 bp):
AAACAAATTGCATGTATCATTATCA
Found at i:14795113 original size:53 final size:53
Alignment explanation
Indices: 14795050--14795159 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
14795040 TTGCCATTAC
**
14795050 TTTTGATTATTTGAATTTGCATTGATTTATGCTTTTAATTTGCCAAATATAGT
1 TTTTGATTATTTGAATTCACATTGATTTATGCTTTTAATTTGCCAAATATAGT
14795103 TTTTGATTATTTGAATTCACATTGATTTATGCTTTTAATTTGCCAAATATAGT
1 TTTTGATTATTTGAATTCACATTGATTTATGCTTTTAATTTGCCAAATATAGT
14795156 TTTT
1 TTTT
14795160 AATATTTAGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.26, C:0.08, G:0.12, T:0.54
Consensus pattern (53 bp):
TTTTGATTATTTGAATTCACATTGATTTATGCTTTTAATTTGCCAAATATAGT
Found at i:14795160 original size:29 final size:29
Alignment explanation
Indices: 14795075--14795160 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
14795065 TTTGCATTGA
14795075 TTTATGCTTTTAATTTGCCAAATATAGTT
1 TTTATGCTTTTAATTTGCCAAATATAGTT
** * * *
14795104 TTTGATTATTTGAA-TT--CACAT-T-G-A
1 TTT-ATGCTTTTAATTTGCCAAATATAGTT
14795128 TTTATGCTTTTAATTTGCCAAATATAGTT
1 TTTATGCTTTTAATTTGCCAAATATAGTT
14795157 TTTA
1 TTTA
14795161 ATATTTAGTC
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
23 7 0.17
24 5 0.12
25 1 0.03
26 5 0.12
27 5 0.12
28 1 0.03
29 9 0.22
30 7 0.17
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.52
Consensus pattern (29 bp):
TTTATGCTTTTAATTTGCCAAATATAGTT
Found at i:14796139 original size:17 final size:18
Alignment explanation
Indices: 14796117--14796156 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
14796107 GTGATATAGC
14796117 TACTTTTAG-TTTTATTT
1 TACTTTTAGTTTTTATTT
*
14796134 TACTTTTTGTTTTTATTT
1 TACTTTTAGTTTTTATTT
14796152 T-CTTT
1 TACTTT
14796157 ATGGCTTGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.75
Consensus pattern (18 bp):
TACTTTTAGTTTTTATTT
Found at i:14799725 original size:19 final size:18
Alignment explanation
Indices: 14799701--14799745 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
14799691 TGTTATTTAA
14799701 TTTTTTTTTATTTT-TGTG
1 TTTTTTTTT-TTTTCTGTG
14799719 TTTTTTTCTTTTTTCTGTG
1 TTTTTTT-TTTTTTCTGTG
*
14799738 TTTATTTT
1 TTTTTTTT
14799746 GGTGTTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.04, C:0.04, G:0.09, T:0.82
Consensus pattern (18 bp):
TTTTTTTTTTTTTCTGTG
Found at i:14800121 original size:44 final size:43
Alignment explanation
Indices: 14800073--14800394 Score: 191
Period size: 44 Copynumber: 7.5 Consensus size: 43
14800063 GCTCTATTGT
14800073 AACTTCAGAGA-ATAAGACTTGCTATCTTCTGTCTGCTCCACTGC
1 AACTTCAGAGAGATAAGACTTG-TAT-TTCTGTCTGCTCCACTGC
* * * * * * *
14800117 AACTTTAGGGAGATAAGAC-TGGA-TGC-GATTTACTCTACTGC
1 AACTTCAGAGAGATAAGACTTGTATTTCTG-TCTGCTCCACTGC
* * *
14800158 AACTTCAGAGAGATAAGACCTGTCATTT-TAATCCGCTCCACTGC
1 AACTTCAGAGAGATAAGACTTGT-ATTTCT-GTCTGCTCCACTGC
* * * *
14800202 AACATCAGGGAGATAGGA-TTGGTTTATTCTGTCTGCTCCACTGC
1 AACTTCAGAGAGATAAGACTT-GTAT-TTCTGTCTGCTCCACTGC
* * * * *
14800246 AACTTCAGTGAGATAAGAC-TGGA-TGC-GATCTGCTCTACTGT
1 AACTTCAGAGAGATAAGACTTGTATTTCTG-TCTGCTCCACTGC
* ** *
14800287 AACTTTAGAGAGATAAGATCTGTGGT-TTT-AATCCGCTCCACTGC
1 AACTTCAGAGAGATAAGA-CT-T-GTATTTCTGTCTGCTCCACTGC
* * * *
14800331 AACTTCAGAGAGATAGGA-TTGGTTTCTTCTGTCTACTCTACTGC
1 AACTTCAGAGAGATAAGACTT-GTAT-TTCTGTCTGCTCCACTGC
*
14800375 AACTTCAGGGAGATAAGACT
1 AACTTCAGAGAGATAAGACT
14800395 GGATGTGATC
Statistics
Matches: 208, Mismatches: 48, Indels: 43
0.70 0.16 0.14
Matches are distributed among these distances:
40 2 0.01
41 62 0.30
42 5 0.02
43 7 0.03
44 121 0.58
45 11 0.05
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
AACTTCAGAGAGATAAGACTTGTATTTCTGTCTGCTCCACTGC
Found at i:14800139 original size:85 final size:85
Alignment explanation
Indices: 14799991--14800216 Score: 276
Period size: 85 Copynumber: 2.6 Consensus size: 85
14799981 TTGTAGTTTC
* * **
14799991 TCAGTAGAATAAAATTTGCTATCTTCAGTCTGCTTGACTGCAACTTCAGGGAGATAAGACTGGAT
1 TCAG-AGAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGAT
* * *
14800056 ACGATTTGCTCTATTGTAACT
65 ACGATTTACTCTACTGCAACT
* * *
14800077 TCAGAGAATAAGACTTGCTATCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATG
1 TCAGAGAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATA
14800142 CGATTTACTCTACTGCAACT
66 CGATTTACTCTACTGCAACT
* * * * *
14800162 TCAGAGAGATAAGACCTG-TCAT-TTTAATCCGCTCCACTGCAACATCAGGGAGATA
1 TCAGAGA-ATAAGACTTGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
14800217 GGATTGGTTT
Statistics
Matches: 121, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
85 106 0.88
86 15 0.12
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (85 bp):
TCAGAGAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATA
CGATTTACTCTACTGCAACT
Found at i:14800160 original size:41 final size:41
Alignment explanation
Indices: 14800027--14800304 Score: 164
Period size: 44 Copynumber: 6.6 Consensus size: 41
14800017 AGTCTGCTTG
*
14800027 ACTGCAACTTCAGGGAGATAAGACTGGATACGATTTGCTCT
1 ACTGCAACTTCAGAGAGATAAGACTGGATACGATTTGCTCT
* * * * ** *
14800068 ATTGTAACTTCAGAGA-ATAAGACTTGCTATCTTCTGTCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGACTGGATA-C-GAT-T-TGCTCT
* * * *
14800112 ACTGCAACTTTAGGGAGATAAGACTGGATGCGATTTACTCT
1 ACTGCAACTTCAGAGAGATAAGACTGGATACGATTTGCTCT
* *** ** *
14800153 ACTGCAACTTCAGAGAGATAAGACCTGTCATTTTAATCCGCTCC
1 ACTGCAACTTCAGAGAGATAAGA-CTG-GA-TACGATTTGCTCT
* * * * * * *
14800197 ACTGCAACATCAGGGAGATAGGATTGGTTTATTCTG-TCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGACTGG---ATAC-GATTTGCTCT
* * *
14800241 ACTGCAACTTCAGTGAGATAAGACTGGATGCGATCTGCTCT
1 ACTGCAACTTCAGAGAGATAAGACTGGATACGATTTGCTCT
* *
14800282 ACTGTAACTTTAGAGAGATAAGA
1 ACTGCAACTTCAGAGAGATAAGA
14800305 TCTGTGGTTT
Statistics
Matches: 178, Mismatches: 46, Indels: 26
0.71 0.18 0.10
Matches are distributed among these distances:
40 12 0.07
41 69 0.39
42 5 0.03
43 5 0.03
44 76 0.43
45 11 0.06
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (41 bp):
ACTGCAACTTCAGAGAGATAAGACTGGATACGATTTGCTCT
Found at i:14800261 original size:129 final size:129
Alignment explanation
Indices: 14800099--14800519 Score: 551
Period size: 129 Copynumber: 3.3 Consensus size: 129
14800089 ACTTGCTATC
* *
14800099 TTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGCGATTTACTCTACTGCAACTTC
1 TTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTC
* *
14800164 AGAGAGATAAGACCTGTCATTTTAATCCGCTCCACTGCAACATCAGGGAGATAGGATTGGTTTA
66 AGAGAGATAAGATCTGTCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTA
* * * *
14800228 TTCTGTCTGCTCCACTGCAACTTCAGTGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTT
1 TTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTC
** * *
14800293 AGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTC
66 AGAGAGATAAGATCTGTCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTA
* * * * *
14800357 TTCTGTCTACTCTACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTACT-TTCTGGAACTTC
1 TTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTC
* * * * * * * **
14800421 ACAGTGATAAGATTTGGCATTTTAATCCGCTCCGCTACAACTTCAGGGAGATAGGATT-ATTGGC
66 AGAGAGATAAGATCTGTCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTT-TA
* *
14800485 TT-TAATCTACTCCACTGCAACTTCAGGGAGATAAG
1 TTCT-GTCTGCTCCACTGCAACTTCAGGGAGATAAG
14800520 GTTCGCCATC
Statistics
Matches: 257, Mismatches: 33, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
127 3 0.01
128 90 0.35
129 164 0.64
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
TTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTC
AGAGAGATAAGATCTGTCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTA
Found at i:14814085 original size:24 final size:24
Alignment explanation
Indices: 14814052--14814155 Score: 77
Period size: 24 Copynumber: 4.3 Consensus size: 24
14814042 CGTAAGATCG
*
14814052 TCCCGTTATTAGCTCTCATGAGCA
1 TCCCGATATTAGCTCTCATGAGCA
* *
14814076 TCCCGATATTGGCTCTCTTGAGC-
1 TCCCGATATTAGCTCTCATGAGCA
* * * *
14814099 TACCCAATATATGGCTTTCACT-AGCT
1 T-CCCGATAT-TAGCTCTCA-TGAGCA
* * *
14814125 TCCCGTTAATAGCTCTTATGAGCA
1 TCCCGATATTAGCTCTCATGAGCA
14814149 TCCCGAT
1 TCCCGAT
14814156 TTGGTTGTGA
Statistics
Matches: 61, Mismatches: 14, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
23 2 0.03
24 42 0.69
25 15 0.25
26 2 0.03
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (24 bp):
TCCCGATATTAGCTCTCATGAGCA
Found at i:14815864 original size:35 final size:35
Alignment explanation
Indices: 14815797--14815955 Score: 201
Period size: 35 Copynumber: 4.5 Consensus size: 35
14815787 ACATTGGTAT
* *
14815797 TCCATCCGAAACACACCAGATGCTCATAAGAGCTAA
1 TCCATCCAAAACACACCAG-TGCTCGTAAGAGCTAA
*
14815833 TCCATCCAAAACACACCAGTGCTCGTTAGAGCTAA
1 TCCATCCAAAACACACCAGTGCTCGTAAGAGCTAA
* * * *
14815868 TCCATCCAAAACACTCCAATGCCCGTTAGAGCTAA
1 TCCATCCAAAACACACCAGTGCTCGTAAGAGCTAA
* *
14815903 TCCATCCAAAACACACTAGTGCTCGTAAGAGCTAG
1 TCCATCCAAAACACACCAGTGCTCGTAAGAGCTAA
* **
14815938 TCCAACTGAAACACACCA
1 TCCATCCAAAACACACCA
14815956 AAACAGAGAG
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 89 0.83
36 18 0.17
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.18
Consensus pattern (35 bp):
TCCATCCAAAACACACCAGTGCTCGTAAGAGCTAA
Found at i:14826823 original size:14 final size:14
Alignment explanation
Indices: 14826804--14826841 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
14826794 TTCCAAACAC
*
14826804 AAACCTTGAACCCT
1 AAACCTTAAACCCT
14826818 AAACCTTAAACCCT
1 AAACCTTAAACCCT
14826832 AAACCTTAAA
1 AAACCTTAAA
14826842 TTTGTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.32, G:0.03, T:0.21
Consensus pattern (14 bp):
AAACCTTAAACCCT
Found at i:14826918 original size:27 final size:25
Alignment explanation
Indices: 14826882--14826943 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 25
14826872 GAGGTTTAGG
*
14826882 GTTTATGGTTCAAGGTTCAAATTAAGA
1 GTTTAGGGTTCAAGGTTCAAATT-A-A
* **
14826909 GTTTAGGGTTCGAGGTTCATGTTAA
1 GTTTAGGGTTCAAGGTTCAAATTAA
14826934 GTTTAGGGTT
1 GTTTAGGGTT
14826944 TATGGTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 11 0.35
26 1 0.03
27 19 0.61
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.40
Consensus pattern (25 bp):
GTTTAGGGTTCAAGGTTCAAATTAA
Found at i:14842005 original size:70 final size:69
Alignment explanation
Indices: 14841931--14842184 Score: 294
Period size: 70 Copynumber: 3.6 Consensus size: 69
14841921 ACAAGTCAAA
* * *
14841931 AAATTATTGCGCCCAGTGCTAGTCAGATAACTGGCGATAGTTGTGCCCAACACTAGTCGAATGAA
1 AAATTATTGCGCCCAGCGCTAGTCAGATAACTGACGATAGTTGTGCCCAGCACTAGTCGAATGAA
*
14841996 CTGAT
66 -TGAC
* * * * * * *
14842001 AAATTATTGCACTCAACGCTAGTCGGATAA-TCGATGGTAGTTGTGCCCAGCACTAGTCGAACGA
1 AAATTATTGCGCCCAGCGCTAGTCAGATAACT-GACGATAGTTGTGCCCAGCACTAGTCGAATGA
14842065 ATTGAC
65 A-TGAC
* * * *
14842071 AAATTATTGCGCCCAGCACTGGTCAAATAACTGACGATAGTTGTGCCCAGCACTAGTTGAATGAA
1 AAATTATTGCGCCCAGCGCTAGTCAGATAACTGACGATAGTTGTGCCCAGCACTAGTCGAATGAA
14842136 TCGAC
66 T-GAC
* * * *
14842141 AACTTGTTGCGCCCAGCGCTAGTCGGATAACTGATGATAGTTGT
1 AAATTATTGCGCCCAGCGCTAGTCAGATAACTGACGATAGTTGT
14842185 TATCCGCAAT
Statistics
Matches: 151, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
69 2 0.01
70 148 0.98
71 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (69 bp):
AAATTATTGCGCCCAGCGCTAGTCAGATAACTGACGATAGTTGTGCCCAGCACTAGTCGAATGAA
TGAC
Found at i:14842087 original size:36 final size:36
Alignment explanation
Indices: 14842045--14842165 Score: 104
Period size: 36 Copynumber: 3.4 Consensus size: 36
14842035 TGGTAGTTGT
*
14842045 GCCCAGCACTAGTCGAACGAATTGACAAATTATTGC
1 GCCCAGCACTAGTCGAAAGAATTGACAAATTATTGC
* * * * *
14842081 GCCCAGCACTGGTC-AAATAACTGAC-GA-TAGTTGT
1 GCCCAGCACTAGTCGAAAGAATTGACAAATTA-TTGC
* * * * *
14842115 GCCCAGCACTAGTTGAATGAATCGACAACTTGTTGC
1 GCCCAGCACTAGTCGAAAGAATTGACAAATTATTGC
*
14842151 GCCCAGCGCTAGTCG
1 GCCCAGCACTAGTCG
14842166 GATAACTGAT
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
33 2 0.03
34 16 0.25
35 15 0.24
36 29 0.46
37 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (36 bp):
GCCCAGCACTAGTCGAAAGAATTGACAAATTATTGC
Found at i:14842161 original size:140 final size:140
Alignment explanation
Indices: 14841931--14842184 Score: 350
Period size: 140 Copynumber: 1.8 Consensus size: 140
14841921 ACAAGTCAAA
** * *
14841931 AAATTATTGCGCCCAGTGCTAGTCAGATAACTGGCGATAGTTGTGCCCAACACTAGTCGAATGAA
1 AAATTATTGCGCCCAGCACTAGTCAAATAACTGACGATAGTTGTGCCCAACACTAGTCGAATGAA
* * *
14841996 CTGATAAATTATTGCACTCAACGCTAGTCGGATAA-TCGATGGTAGTTGTGCCCAGCACTAGTCG
66 CTGACAAATTATTGCACCCAACGCTAGTCGGATAACT-GATGATAGTTGTGCCCAGCACTAGTCG
14842060 AACGAATTGAC
130 AACGAATTGAC
* * *
14842071 AAATTATTGCGCCCAGCACTGGTCAAATAACTGACGATAGTTGTGCCCAGCACTAGTTGAATGAA
1 AAATTATTGCGCCCAGCACTAGTCAAATAACTGACGATAGTTGTGCCCAACACTAGTCGAATGAA
* * * *
14842136 -TCGACAACTTGTTGCGCCCAGCGCTAGTCGGATAACTGATGATAGTTGT
66 CT-GACAAATTATTGCACCCAACGCTAGTCGGATAACTGATGATAGTTGT
14842185 TATCCGCAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
139 1 0.01
140 96 0.98
141 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (140 bp):
AAATTATTGCGCCCAGCACTAGTCAAATAACTGACGATAGTTGTGCCCAACACTAGTCGAATGAA
CTGACAAATTATTGCACCCAACGCTAGTCGGATAACTGATGATAGTTGTGCCCAGCACTAGTCGA
ACGAATTGAC
Found at i:14847973 original size:78 final size:77
Alignment explanation
Indices: 14847836--14848383 Score: 598
Period size: 78 Copynumber: 7.0 Consensus size: 77
14847826 TTTTCTTTAA
* * *
14847836 TTTAATTT-CTCATTTTTGGAAATAAACCAAATTTGGAATGAAATCGTTGAACGGCGGGAATCAA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
*
14847900 TCCTAAAACAATT
66 TCCCAAAACAA-T
* * *
14847913 TTTATTTTACTCATTTTTGGAAATAAAATAAATTTGGAATAAAATTGTTGAATGGCGGGAATCAA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
*
14847978 TCCCAAAACGATT
66 TCCCAAAAC-AAT
* * * * *
14847991 TTTATATTACTCATTTTTGGAAATAAAACAAATTTGAAATAAAATTGTTGACCGGCGGGAATCTA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
* *
14848056 TCCCGAAACGAT
66 TCCCAAAACAAT
* * * *
14848068 TTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAAACGTTGAACGGCAGGAGTCAA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
14848133 TCCCAAAACAAT
66 TCCCAAAACAAT
* * * * * * **
14848145 TTTATTTTACTCGTTTTTGAAAATAAAA-AAAATTAGAATAAAATCGTTAAACGGTGGGAATTGA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
14848209 TCCCAAAACAAT
66 TCCCAAAACAAT
* * ** *
14848221 TTTATTTTACTCGTTTTTGGAAATAAAACAATTTTGGAATAAAATC-TTGAACAACGAGAATCAA
1 TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
* * *
14848285 TTCCGAAATAATT
66 TCCCAAAACAA-T
* *
14848298 TTTATTTTACTTTTAATTTCCCGTTTGGAAATAAAATCAAATTAATGGAATAAAATCCGTTAAAC
1 TTTATTTTAC---TCA-TT----TTTGGAAATAAAA-CAAATT--TGGAATAAAAT-CGTTGAAC
*
14848363 AGCGGGAATCAATCCCAAAAC
54 GGCGGGAATCAATCCCAAAAC
14848384 GGATTTTACC
Statistics
Matches: 393, Mismatches: 61, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
76 85 0.22
77 126 0.32
78 127 0.32
79 1 0.00
80 1 0.00
81 2 0.01
85 13 0.03
86 5 0.01
88 11 0.03
89 1 0.00
90 21 0.05
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (77 bp):
TTTATTTTACTCATTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGGCGGGAATCAA
TCCCAAAACAAT
Found at i:14848250 original size:153 final size:153
Alignment explanation
Indices: 14847836--14848272 Score: 556
Period size: 155 Copynumber: 2.8 Consensus size: 153
14847826 TTTTCTTTAA
* * * * * *
14847836 TTTA-ATTTCTCATTTTTGGAAATAAACCAAATTTGGAATGAAATCGTTGAACGGCGGGAATCAA
1 TTTATATTACTCATTTTTGGAAATAAA-AAAAATTAGAATAAAATCGTTGAACGGCGGGAAT-TA
* * * *
14847900 TCCTAAAACAATTTTTATTTTACTCATTTTTGGAAATAAAATAAATTTGGAATAAAATTGTTGAA
64 TCCCAAAACAA-TTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAA
* * *
14847965 TGGCGGGAATCAATCCCAAAACGATT
128 CGGCAGGAATCAATCCCAAAACGAAT
* * * *
14847991 TTTATATTACTCATTTTTGGAAATAAAACAAATTTGAAATAAAATTGTTGACCGGCGGGAATCTA
1 TTTATATTACTCATTTTTGGAAATAAAAAAAATTAG-AATAAAATCGTTGAACGGCGGGAAT-TA
* * *
14848056 TCCCGAAACGATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAAACGTTGAAC
64 TCCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAAC
*
14848121 GGCAGGAGTCAATCCCAAAAC-AAT
129 GGCAGGAATCAATCCCAAAACGAAT
* * * * *
14848145 TTTATTTTACTCGTTTTTGAAAATAAAAAAAATTAGAATAAAATCGTTAAACGGTGGGAATTGAT
1 TTTATATTACTCATTTTTGGAAATAAAAAAAATTAGAATAAAATCGTTGAACGGCGGGAATT-AT
*
14848210 CCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAATTTTGGAATAAAATC-TTGAAC
65 CCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAAC
14848273 AACGAGAATC
Statistics
Matches: 246, Mismatches: 33, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
152 7 0.03
153 76 0.31
154 33 0.13
155 77 0.31
156 53 0.22
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (153 bp):
TTTATATTACTCATTTTTGGAAATAAAAAAAATTAGAATAAAATCGTTGAACGGCGGGAATTATC
CCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCGTTGAACGG
CAGGAATCAATCCCAAAACGAAT
Found at i:14848301 original size:153 final size:152
Alignment explanation
Indices: 14847836--14848308 Score: 556
Period size: 153 Copynumber: 3.1 Consensus size: 152
14847826 TTTTCTTTAA
* * * * * *
14847836 TTTAATTT-CTCATTTTTGGAAATAAACCAAATTTGGAATGAAATCGTTGAACGGCGGGAATCAA
1 TTTATTTTACTCATTTTTGGAAATAAA-AAAAATTAGAATAAAATCGTTGAACGGCGGGAAT-TA
* * * *
14847900 TCCTAAAACAATTTTTATTTTACTCATTTTTGGAAATAAAATAAATTTGGAATAAAATTGTTGAA
64 TCCCAAAACAA-TTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAA-TCTTGAA
* * *
14847965 TGGCGGGAATCAATCCCAAAACGATT
127 CGGCGAGAATCAATCCCAAAACAATT
* * * * *
14847991 TTTATATTACTCATTTTTGGAAATAAAACAAATTTGAAATAAAATTGTTGACCGGCGGGAATCTA
1 TTTATTTTACTCATTTTTGGAAATAAAAAAAATTAG-AATAAAATCGTTGAACGGCGGGAAT-TA
* * *
14848056 TCCCGAAACGATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAAACGTTGAAC
64 TCCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATC-TTGAAC
*
14848121 GGC-AGGAGTCAATCCCAAAACAA-T
128 GGCGA-GAATCAATCCCAAAACAATT
* * * *
14848145 TTTATTTTACTCGTTTTTGAAAATAAAAAAAATTAGAATAAAATCGTTAAACGGTGGGAATTGAT
1 TTTATTTTACTCATTTTTGGAAATAAAAAAAATTAGAATAAAATCGTTGAACGGCGGGAATT-AT
* **
14848210 CCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAATTTTGGAATAAAATCTTGAACAA
65 CCCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCTTGAACGG
* * *
14848275 CGAGAATCAATTCCGAAATAATT
130 CGAGAATCAATCCCAAAACAATT
14848298 TTTATTTTACT
1 TTTATTTTACT
14848309 TTTAATTTCC
Statistics
Matches: 271, Mismatches: 40, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
152 22 0.08
153 89 0.33
154 32 0.12
155 78 0.29
156 50 0.18
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (152 bp):
TTTATTTTACTCATTTTTGGAAATAAAAAAAATTAGAATAAAATCGTTGAACGGCGGGAATTATC
CCAAAACAATTTTATTTTACTCGTTTTTGGAAATAAAACAAATTTGGAATAAAATCTTGAACGGC
GAGAATCAATCCCAAAACAATT
Found at i:14850327 original size:19 final size:20
Alignment explanation
Indices: 14850289--14850338 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
14850279 AAAAATATAA
14850289 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
*
14850309 ATTTTTAATTTTTGA-AAATT
1 ATTTTGAATTTTT-ATAAATT
14850329 ATTTTGAATT
1 ATTTTGAATT
14850339 ATTTTGTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:14864888 original size:5 final size:5
Alignment explanation
Indices: 14864878--14864909 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
14864868 TTGGAATTAA
14864878 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TA
14864910 TTGTTTAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAAAT
Found at i:14865979 original size:21 final size:21
Alignment explanation
Indices: 14865946--14865985 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14865936 TGATTATAAG
*
14865946 TGAATTATATTATTATATGTT
1 TGAATTATATTATGATATGTT
14865967 TGAATTACT-TTATGATATG
1 TGAATTA-TATTATGATATG
14865986 ATTATATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (21 bp):
TGAATTATATTATGATATGTT
Found at i:14867640 original size:25 final size:25
Alignment explanation
Indices: 14867604--14867651 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14867594 GCTCTCTTTC
14867604 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGT
*
14867629 GAGCCATGTAACGGGAAGCTCAT
1 GAGCCATATAACGGGAAGCTCAT
14867652 AAGAGCTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGT
Found at i:14867657 original size:25 final size:25
Alignment explanation
Indices: 14867604--14867670 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
14867594 GCTCTCTTTC
* **
14867604 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATGTAACGGGAAGCTCATAA
14867629 GAGCCATGTAACGGGAAGCTCATAA
1 GAGCCATGTAACGGGAAGCTCATAA
14867654 GAG-C-TGTAATCGGGAAG
1 GAGCCATGTAA-CGGGAAG
14867671 TTCAAGCGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.13
24 8 0.21
25 25 0.66
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (25 bp):
GAGCCATGTAACGGGAAGCTCATAA
Found at i:14867825 original size:24 final size:25
Alignment explanation
Indices: 14867763--14867825 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
14867753 CAAGAACCAT
*
14867763 ATAACGGGAAGCTCGTGAGAGAAAA
1 ATAACGGGAAGCTCCTGAGAGAAAA
* * *
14867788 ATATCGAGATGCTCCTGAGAG-AAA
1 ATAACGGGAAGCTCCTGAGAGAAAA
*
14867812 ATAACGGGACGCTC
1 ATAACGGGAAGCTC
14867826 TTTCAAGCTG
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.16
Consensus pattern (25 bp):
ATAACGGGAAGCTCCTGAGAGAAAA
Found at i:14873824 original size:50 final size:50
Alignment explanation
Indices: 14873703--14873892 Score: 290
Period size: 50 Copynumber: 3.8 Consensus size: 50
14873693 GATAATAACA
* ** * *
14873703 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTTATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* **
14873754 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
14873804 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14873854 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC
14873893 CCTTTACCCA
Statistics
Matches: 127, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 93 0.73
51 34 0.27
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14874011 original size:13 final size:13
Alignment explanation
Indices: 14873990--14874019 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14873980 GCTTGGATCA
*
14873990 TCATTAAATAAAT
1 TCATGAAATAAAT
14874003 TCATGAAATAAAT
1 TCATGAAATAAAT
14874016 TCAT
1 TCAT
14874020 AGTTTCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.37
Consensus pattern (13 bp):
TCATGAAATAAAT
Found at i:14876650 original size:2 final size:2
Alignment explanation
Indices: 14876638--14876675 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14876628 ATGATAAAGC
*
14876638 CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14876676 TATATATATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:14877354 original size:25 final size:25
Alignment explanation
Indices: 14877334--14877398 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
14877324 TCGAGCTATA
14877334 TAACGGGAATCTCATGTGAGCCATG
1 TAACGGGAATCTCATGTGAGCCATG
**
14877359 TAACAAGAAGTC-CATGTGAGCCATG
1 TAACGGGAA-TCTCATGTGAGCCATG
* *
14877384 TAACGGAAAGCTCAT
1 TAACGGGAATCTCAT
14877399 AAGAGCTGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
24 1 0.03
25 29 0.91
26 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (25 bp):
TAACGGGAATCTCATGTGAGCCATG
Found at i:14877794 original size:24 final size:24
Alignment explanation
Indices: 14877767--14877813 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14877757 CTTTATTATC
*
14877767 GAGAAGCTC-CGAAGAGCCATAAAT
1 GAGAAGCTCGC-AAGAACCATAAAT
14877791 GAGAAGCTCGCAAGAACCATAAA
1 GAGAAGCTCGCAAGAACCATAAA
14877814 ATAGGAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.45, C:0.21, G:0.23, T:0.11
Consensus pattern (24 bp):
GAGAAGCTCGCAAGAACCATAAAT
Found at i:14878216 original size:21 final size:21
Alignment explanation
Indices: 14878192--14878233 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14878182 AAATTTAACA
* *
14878192 TCAATTTAATACAATTTATAT
1 TCAATTCAATACAATTCATAT
*
14878213 TCAATTCAATCCAATTCATAT
1 TCAATTCAATACAATTCATAT
14878234 CTTAGGTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:14880050 original size:10 final size:11
Alignment explanation
Indices: 14880024--14880049 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14880014 AAAATTAAAA
14880024 AAAAATATTTT
1 AAAAATATTTT
14880035 AAAAATATTTT
1 AAAAATATTTT
14880046 AAAA
1 AAAA
14880050 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:14880072 original size:38 final size:39
Alignment explanation
Indices: 14880011--14880116 Score: 151
Period size: 38 Copynumber: 2.6 Consensus size: 39
14880001 AAAATTTATT
*
14880011 TTAAAAATTAAAAAAAAATATTTTAAAAATATTTTAAAA
1 TTAAAAAATAAAAAAAAATATTTTAAAAATATTTTAAAA
*
14880050 TTAAAAAAT-AAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAATAAAAAAAAATATTTTAAAAATATTTTAAAA
14880088 TTAAAAAATTTAAAAAATAAATATATTTA
1 TTAAAAAA--TAAAAAA-AAATAT-TTTA
14880117 TTATATCCAA
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
38 36 0.61
39 8 0.14
40 1 0.02
41 5 0.08
42 5 0.08
43 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (39 bp):
TTAAAAAATAAAAAAAAATATTTTAAAAATATTTTAAAA
Found at i:14880098 original size:16 final size:17
Alignment explanation
Indices: 14880071--14880116 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
14880061 AAAAAGTATT
*
14880071 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
14880088 TTAAAAA-ATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
14880104 ATAAATATATTTA
1 TTAAAAATATTTA
14880117 TTATATCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:14880199 original size:13 final size:13
Alignment explanation
Indices: 14880181--14880205 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14880171 TTTTTTGCCT
14880181 AAGCCTATATTTC
1 AAGCCTATATTTC
14880194 AAGCCTATATTT
1 AAGCCTATATTT
14880206 TTACCCAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (13 bp):
AAGCCTATATTTC
Found at i:14883056 original size:13 final size:14
Alignment explanation
Indices: 14883030--14883058 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14883020 TAACACCATT
14883030 CATATCTATTCAAA
1 CATATCTATTCAAA
14883044 CATATCT-TTCAAA
1 CATATCTATTCAAA
14883057 CA
1 CA
14883059 AATCATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (14 bp):
CATATCTATTCAAA
Found at i:14884189 original size:41 final size:41
Alignment explanation
Indices: 14884132--14884216 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
14884122 ATATAAGTGT
*
14884132 TATTCGATGCTGCTCACACAAGATGTAGAGAATCCACAACA
1 TATTCGATGCTACTCACACAAGATGTAGAGAATCCACAACA
*
14884173 TATTCGATGCTACTCACACAAGATGTAGATAATCCACAACA
1 TATTCGATGCTACTCACACAAGATGTAGAGAATCCACAACA
14884214 TAT
1 TAT
14884217 GCTAGATCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (41 bp):
TATTCGATGCTACTCACACAAGATGTAGAGAATCCACAACA
Found at i:14886260 original size:29 final size:28
Alignment explanation
Indices: 14886222--14886290 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 28
14886212 ACCAAAAATT
14886222 TATTTT-AAAAATTAAAAAAATTAAA-AA
1 TATTTTAAAAAATT-AAAAAATTAAATAA
**
14886249 GTATTTTAAAAATATTTTAAAATTAAATAA
1 -TATTTTAAAAA-ATTAAAAAATTAAATAA
*
14886279 AATTTTAAAAAA
1 TATTTTAAAAAA
14886291 GTATTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
28 7 0.20
29 23 0.66
30 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (28 bp):
TATTTTAAAAAATTAAAAAATTAAATAA
Found at i:14886264 original size:11 final size:12
Alignment explanation
Indices: 14886242--14886270 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
14886232 ATTAAAAAAA
14886242 TTAAAAAGTATT
1 TTAAAAAGTATT
14886254 TTAAAAA-TATT
1 TTAAAAAGTATT
14886265 TTAAAA
1 TTAAAA
14886271 TTAAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (12 bp):
TTAAAAAGTATT
Found at i:14886293 original size:42 final size:39
Alignment explanation
Indices: 14886222--14886330 Score: 122
Period size: 39 Copynumber: 2.8 Consensus size: 39
14886212 ACCAAAAATT
14886222 TATTTTAAAAATTAAAAAAATTAAAAAGTATTTTAAAAA
1 TATTTTAAAAATTAAAAAAATTAAAAAGTATTTTAAAAA
14886261 TATTTT-AAAATTAAATAAAATTTTAAAAAAGTATTTT--AAA
1 TATTTTAAAAATTAAA-AAAA--TT-AAAAAGTATTTTAAAAA
**
14886301 -ATTAAAAAAATTAAAAAAA-TAAAAA-TATTT
1 TATTTTAAAAATTAAAAAAATTAAAAAGTATTT
14886331 ATTATATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 15
0.79 0.03 0.19
Matches are distributed among these distances:
34 5 0.08
35 5 0.08
36 1 0.02
38 9 0.14
39 17 0.27
40 12 0.19
41 2 0.03
42 12 0.19
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (39 bp):
TATTTTAAAAATTAAAAAAATTAAAAAGTATTTTAAAAA
Found at i:14886299 original size:31 final size:28
Alignment explanation
Indices: 14886238--14886321 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 28
14886228 AAAAATTAAA
*
14886238 AAAATTAAAAAGTATTTTAAAAATATTTT
1 AAAATTAAAAA-AATTTTAAAAATATTTT
14886267 AAAATTAAATAAAATTTTAAAAAAGTATTTT
1 AAAATTAAA-AAAATTTT-AAAAA-TATTTT
**
14886298 AAAATTAAAAAAATTAAAAAAATA
1 AAAATTAAAAAAATTTTAAAAATA
14886322 AAAATATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
28 2 0.04
29 19 0.39
30 13 0.27
31 15 0.31
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAATTAAAAAAATTTTAAAAATATTTT
Found at i:14886319 original size:30 final size:30
Alignment explanation
Indices: 14886256--14886319 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
14886246 AAAGTATTTT
*
14886256 AAAAATATTTTAAAATTAAATAAAATTTTAA
1 AAAAATATTTTAAAATTAAATAAAA-TTAAA
*
14886287 AAAAGTATTTTAAAATTAAA-AAAATTAAA
1 AAAAATATTTTAAAATTAAATAAAATTAAA
14886316 AAAA
1 AAAA
14886320 TAAAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 8 0.26
30 4 0.13
31 19 0.61
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
AAAAATATTTTAAAATTAAATAAAATTAAA
Found at i:14899124 original size:61 final size:58
Alignment explanation
Indices: 14899059--14899174 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 58
14899049 TGTGATTATC
* *
14899059 TTAATATTAAATTAAATTTAATATTTATCTTGTAGATAAGTATCCTATTAATTTAATAGAT
1 TTAATATTAAATTAAATCTAATATTTATC-T-T-GATAAGTATCATATTAATTTAATAGAT
* *
14899120 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATTTATCTTGATAAGTATCATATTAATTTAATA
14899175 TTAAAGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 22 0.43
59 1 0.02
60 1 0.02
61 27 0.53
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.49
Consensus pattern (58 bp):
TTAATATTAAATTAAATCTAATATTTATCTTGATAAGTATCATATTAATTTAATAGAT
Found at i:14899187 original size:58 final size:60
Alignment explanation
Indices: 14899061--14899194 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 60
14899051 TGATTATCTT
* * * *
14899061 AATATTAAATTAAATTTAATATTTATCTTGTAGATAAGTATCCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATCTTGTAGATAAGTATCATATTAATTTAATA-ATTA
*
14899122 AATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATCTTGTAGATAAGTATCATATTAATTTAATAATTA
*
14899178 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
14899195 TATAGTTGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
56 5 0.08
57 1 0.02
58 32 0.49
59 1 0.02
60 1 0.02
61 25 0.38
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTGTAGATAAGTATCATATTAATTTAATAATTA
Found at i:14901152 original size:5 final size:5
Alignment explanation
Indices: 14901144--14901174 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
14901134 GAGATGGAAT
14901144 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
14901175 ATATTTGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:14901855 original size:30 final size:31
Alignment explanation
Indices: 14901816--14901875 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14901806 AGAGGTAGGA
14901816 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
* * *
14901847 TGGG-AGGGAGTAAAATTTTTTGGGGAAAA
1 TGGGAAGGGAATAAAAGTTTTAGGGGAAAA
14901876 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
Found at i:14902070 original size:9 final size:9
Alignment explanation
Indices: 14902056--14902131 Score: 107
Period size: 9 Copynumber: 8.4 Consensus size: 9
14902046 TTTGGTTAAA
14902056 AATTAACCG
1 AATTAACCG
*
14902065 AATTAATCG
1 AATTAACCG
*
14902074 AATTACCCG
1 AATTAACCG
14902083 AATTAACCG
1 AATTAACCG
*
14902092 AATTAAACG
1 AATTAACCG
14902101 AATTAACCG
1 AATTAACCG
* *
14902110 GATTACCCG
1 AATTAACCG
14902119 AATTAACCG
1 AATTAACCG
14902128 AATT
1 AATT
14902132 GAATCACTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:14902274 original size:18 final size:18
Alignment explanation
Indices: 14902234--14902277 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14902224 ATTTTTTATG
*
14902234 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAGTA
*
14902252 ATTGGGTTGGGTTGATTA
1 ATTGGGTTGGGTTGAGTA
*
14902270 CTTGGGTT
1 ATTGGGTT
14902278 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.02, G:0.43, T:0.43
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAGTA
Found at i:14906258 original size:16 final size:17
Alignment explanation
Indices: 14906237--14906269 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14906227 TCAATATCAA
14906237 AATATTA-AAGTTTATT
1 AATATTAGAAGTTTATT
*
14906253 AATATTAGAATTTTATT
1 AATATTAGAAGTTTATT
14906270 TTATTATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (17 bp):
AATATTAGAAGTTTATT
Done.