Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 57 of 230
Found at i:15462400 original size:19 final size:19
Alignment explanation
Indices: 15462363--15462403 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15462353 ACACTTGTGA
**
15462363 CAAAAAAAAGTTTAAATAC
1 CAAAAAAAAAATTAAATAC
*
15462382 CAAAAAAAAAATTAGATAC
1 CAAAAAAAAAATTAAATAC
15462401 CAA
1 CAA
15462404 TACGTGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.66, C:0.12, G:0.05, T:0.17
Consensus pattern (19 bp):
CAAAAAAAAAATTAAATAC
Found at i:15476340 original size:41 final size:40
Alignment explanation
Indices: 15476290--15476423 Score: 164
Period size: 41 Copynumber: 3.3 Consensus size: 40
15476280 GCATGTATAT
* *
15476290 TGCCAGTGAATCAATTTAGGCTTAAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATCAA-TCAGGCTTAAAGCCTAGCAGGCTAAG
* *
15476331 TGCCGGTGAACTGAATCAGGC-TATAAGCCTAGCTGGCTAAG
1 TGCCGGTGAA-TCAATCAGGCTTA-AAGCCTAGCAGGCTAAG
*
15476372 TGCCGGTG-ATCTAAATCAGGCTTTAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATC--AATCAGGCTTAAAGCCTAGCAGGCTAAG
15476413 TGCCGGTGAAT
1 TGCCGGTGAAT
15476424 ATTTTTTAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
39 1 0.01
40 3 0.04
41 70 0.88
42 6 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TGCCGGTGAATCAATCAGGCTTAAAGCCTAGCAGGCTAAG
Found at i:15479192 original size:101 final size:102
Alignment explanation
Indices: 15479077--15479259 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 102
15479067 AGTGATGGTA
* * *
15479077 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAT-GTCGCATGTGTAGTA
1 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGT-A-ATGGTCACATGTGTAGTA
*
15479139 CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
64 CAATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
*
15479178 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTATCAGATAGTAATGGTCACATGTGTAGTACA
1 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGTAATGGTCACATGTGTAGTACA
15479243 ATGTGCAGGCTACTATG
66 ATGTGCAGGCTACTATG
15479260 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 39 0.53
102 34 0.46
103 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (102 bp):
ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGTAATGGTCACATGTGTAGTACA
ATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
Found at i:15479220 original size:51 final size:49
Alignment explanation
Indices: 15479080--15479257 Score: 191
Period size: 51 Copynumber: 3.5 Consensus size: 49
15479070 GATGGTAACG
* *
15479080 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGATATGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATA-G-TATGTCACA
* * *
15479130 TGTGTAGTACTATGTGCAGGCTACTATG-CGTACCGGATAGCT-TCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTC-TACCAGATAG-TAT-G-TCACA
* *
15479181 TGTGTAGTACTATGTGCAGGCTACCACGTCTATCAGATAGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATAGT-AT-GTCACA
*
15479232 TGTGTAGTACAATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
15479258 TGTGAACCGG
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
49 1 0.01
50 37 0.35
51 66 0.62
52 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATAGTATGTCACA
Found at i:15479338 original size:46 final size:43
Alignment explanation
Indices: 15479263--15479361 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 43
15479253 TACTATGTGA
*
15479263 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCT-AATCGC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATC-C
*
15479306 ACCGGATATCATTAATTACAAAAGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATT--AAAAGGTGGTTGCTATGTGCTGAATCC
15479352 ACCGTGTATC
1 ACCG-GTATC
15479362 TGTTATTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
46 28 0.57
47 5 0.10
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:15489174 original size:41 final size:40
Alignment explanation
Indices: 15489124--15489257 Score: 164
Period size: 41 Copynumber: 3.3 Consensus size: 40
15489114 GCATGTATAT
* *
15489124 TGCCAGTGAATCAATTTAGGCTTAAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATCAA-TCAGGCTTAAAGCCTAGCAGGCTAAG
* *
15489165 TGCCGGTGAACTGAATCAGGC-TATAAGCCTAGCTGGCTAAG
1 TGCCGGTGAA-TCAATCAGGCTTA-AAGCCTAGCAGGCTAAG
*
15489206 TGCCGGTG-ATCTAAATCAGGCTTTAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATC--AATCAGGCTTAAAGCCTAGCAGGCTAAG
15489247 TGCCGGTGAAT
1 TGCCGGTGAAT
15489258 ATTTTTTAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
39 1 0.01
40 3 0.04
41 70 0.88
42 6 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TGCCGGTGAATCAATCAGGCTTAAAGCCTAGCAGGCTAAG
Found at i:15492026 original size:101 final size:102
Alignment explanation
Indices: 15491911--15492093 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 102
15491901 AGTGATGGTA
* * *
15491911 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAT-GTCGCATGTGTAGTA
1 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGT-A-ATGGTCACATGTGTAGTA
*
15491973 CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
64 CAATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
*
15492012 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTATCAGATAGTAATGGTCACATGTGTAGTACA
1 ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGTAATGGTCACATGTGTAGTACA
15492077 ATGTGCAGGCTACTATG
66 ATGTGCAGGCTACTATG
15492094 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 39 0.53
102 34 0.46
103 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (102 bp):
ACGTGTGTAGTACTATGTGCAGGCTACCACGTCTACCAGATAGTAATGGTCACATGTGTAGTACA
ATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATC
Found at i:15492054 original size:51 final size:49
Alignment explanation
Indices: 15491914--15492091 Score: 191
Period size: 51 Copynumber: 3.5 Consensus size: 49
15491904 GATGGTAACG
* *
15491914 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGATATGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATA-G-TATGTCACA
* * *
15491964 TGTGTAGTACTATGTGCAGGCTACTATG-CGTACCGGATAGCT-TCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTC-TACCAGATAG-TAT-G-TCACA
* *
15492015 TGTGTAGTACTATGTGCAGGCTACCACGTCTATCAGATAGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATAGT-AT-GTCACA
*
15492066 TGTGTAGTACAATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
15492092 TGTGAACCGG
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
49 1 0.01
50 37 0.35
51 66 0.62
52 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGATAGTATGTCACA
Found at i:15492172 original size:46 final size:43
Alignment explanation
Indices: 15492097--15492195 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 43
15492087 TACTATGTGA
*
15492097 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCT-AATCGC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATC-C
*
15492140 ACCGGATATCATTAATTACAAAAGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATT--AAAAGGTGGTTGCTATGTGCTGAATCC
15492186 ACCGTGTATC
1 ACCG-GTATC
15492196 TGTTATTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
46 28 0.57
47 5 0.10
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:15506530 original size:116 final size:115
Alignment explanation
Indices: 15506321--15506542 Score: 266
Period size: 116 Copynumber: 1.9 Consensus size: 115
15506311 GCCCTAAATG
** * * * *
15506321 GGTCTGCTCACACAAGTTGACGGTCGGAATGTAGCTATACAATGCCGTTCTCACAAGTTGATGAG
1 GGTCTGCTCACACAAGTTGACGGTCAAAATGTAGCTACACAATGCCGCTCACACAAGCTGATGAG
** ** * *
15506386 TATCTGTAAAAAATGTCTGGACTTAGCCATTGATAGGACATGGTAACCTA
66 TATCTACAAAAAATGTCCAGACTAAGCCATCGATAGGACATGGTAACCTA
* * **
15506436 GGTCTGCTCACACAAGTTGACGTTTAAAATGTAAGCTACACAATGTTGCTCACACAAGCTGATGA
1 GGTCTGCTCACACAAGTTGACGGTCAAAATGT-AGCTACACAATGCCGCTCACACAAGCTGATGA
*
15506501 GTATCTACAACAAAT-TCCAGACCTAAGCCATCGATAGGACAT
65 GTATCTACAAAAAATGTCCAGA-CTAAGCCATCGATAGGACAT
15506543 TCAGGACCAG
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
115 32 0.36
116 56 0.64
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (115 bp):
GGTCTGCTCACACAAGTTGACGGTCAAAATGTAGCTACACAATGCCGCTCACACAAGCTGATGAG
TATCTACAAAAAATGTCCAGACTAAGCCATCGATAGGACATGGTAACCTA
Found at i:15507457 original size:5 final size:5
Alignment explanation
Indices: 15507449--15507478 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
15507439 TTTGTTTTTT
15507449 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
15507479 TCAAATTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:15509850 original size:40 final size:40
Alignment explanation
Indices: 15509792--15509944 Score: 191
Period size: 40 Copynumber: 3.8 Consensus size: 40
15509782 GGTTTCAGTA
* *
15509792 CAATGCCATGTCTT-ACATGCTTACGGTACCATAATCAATT
1 CAATGGCATG-CTTAACATGCTTACGGTAACATAATCAATT
*
15509832 CAATGGCATGGTTAACATGCTTACGGTAACATAATCAATT
1 CAATGGCATGCTTAACATGCTTACGGTAACATAATCAATT
* *
15509872 CAATGGCATGCTTAACATGCTTAAGGTAACATAATAAATT
1 CAATGGCATGCTTAACATGCTTACGGTAACATAATCAATT
* * * * * *
15509912 CAATTGAAAGCTTATCATACTTATGGTAACATA
1 CAATGGCATGCTTAACATGCTTACGGTAACATA
15509945 TTTAGTATAT
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (40 bp):
CAATGGCATGCTTAACATGCTTACGGTAACATAATCAATT
Found at i:15516219 original size:24 final size:24
Alignment explanation
Indices: 15516152--15516219 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
15516142 GTGATCATCT
* *
15516152 TCTTCATCTTCA-CTCCACCCTCG
1 TCTTCATCTTCATCTCCATCGTCG
*
15516175 TAC-TCATCTTCATCTCTATCGTCG
1 T-CTTCATCTTCATCTCCATCGTCG
*
15516199 TCTTCATCTTCATATCCATCG
1 TCTTCATCTTCATCTCCATCG
15516220 CTTTCCTCCG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
23 11 0.30
24 26 0.70
ACGTcount: A:0.16, C:0.38, G:0.06, T:0.40
Consensus pattern (24 bp):
TCTTCATCTTCATCTCCATCGTCG
Found at i:15517641 original size:10 final size:10
Alignment explanation
Indices: 15517626--15517667 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
15517616 TCGACAAGAA
15517626 AAAATATTTT
1 AAAATATTTT
15517636 AAAATATTTT
1 AAAATATTTT
15517646 AAAATA--TT
1 AAAATATTTT
15517654 -AAATATTTT
1 AAAATATTTT
15517663 AAAAT
1 AAAAT
15517668 TAACTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
7 5 0.17
8 2 0.07
9 2 0.07
10 20 0.69
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
AAAATATTTT
Found at i:15520082 original size:25 final size:25
Alignment explanation
Indices: 15520026--15520094 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
15520016 TTTGCTACTA
* **
15520026 TTTTCTTATTA-TT-ATTTTTACTG
1 TTTTCTTATTATTTCATTATTGTTG
*
15520049 TTTTCTTATTGTTTCATTATTGTTG
1 TTTTCTTATTATTTCATTATTGTTG
*
15520074 TTTTGTTATTATTTCATTATT
1 TTTTCTTATTATTTCATTATT
15520095 ATGTTATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.26
24 2 0.05
25 26 0.68
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (25 bp):
TTTTCTTATTATTTCATTATTGTTG
Found at i:15520317 original size:22 final size:20
Alignment explanation
Indices: 15520290--15520332 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
15520280 CCGGCCCGAT
15520290 TTTTAATAAACACAAAAAAATA
1 TTTTAA-AAACA-AAAAAAATA
*
15520312 TTTTAAAAATAAAAAAAATA
1 TTTTAAAAACAAAAAAAATA
15520332 T
1 T
15520333 ATTTTTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 4 0.20
22 6 0.30
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
TTTTAAAAACAAAAAAAATA
Found at i:15526840 original size:16 final size:16
Alignment explanation
Indices: 15526819--15526870 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
15526809 GCCCATAATG
* *
15526819 ATTTAATCTTGAAAAA
1 ATTTAAACTTAAAAAA
15526835 ATTTAAACTTAAAAAA
1 ATTTAAACTTAAAAAA
* ** *
15526851 ACTTAAGTTTAAGAAA
1 ATTTAAACTTAAAAAA
15526867 ATTT
1 ATTT
15526871 GATCCCAATC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTTAAACTTAAAAAA
Found at i:15527595 original size:18 final size:19
Alignment explanation
Indices: 15527574--15527615 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
15527564 TTGTTTAGAG
15527574 TTTTACAATTT-TTA-ATAA
1 TTTTACAATTTGTTACA-AA
*
15527592 TTTTATAATTTGTTACAAA
1 TTTTACAATTTGTTACAAA
15527611 TTTTA
1 TTTTA
15527616 ATAATTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 10 0.48
19 10 0.48
20 1 0.05
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTACAATTTGTTACAAA
Found at i:15527607 original size:28 final size:28
Alignment explanation
Indices: 15527575--15527646 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
15527565 TGTTTAGAGT
*
15527575 TTTACAATTTTTAATAATTTTATAATT-
1 TTTACAATTTTTAATAATTTTACAATTA
*
15527602 TGTTACAAATTTTAATAATTTTACAATTA
1 T-TTACAATTTTTAATAATTTTACAATTA
*
15527631 TTTATAATATTTTAAT
1 TTTACAAT-TTTTAAT
15527647 TACATCTAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 29 0.76
29 8 0.21
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTACAATTTTTAATAATTTTACAATTA
Found at i:15527637 original size:18 final size:19
Alignment explanation
Indices: 15527592--15527638 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
15527582 TTTTTAATAA
15527592 TTTTATAATTTGTTACAAAT
1 TTTTATAA-TTGTTACAAAT
*
15527612 TTTAATAATT-TTAC-AAT
1 TTTTATAATTGTTACAAAT
15527629 TATTTATAAT
1 T-TTTATAAT
15527639 ATTTTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.17
18 11 0.46
19 2 0.08
20 7 0.29
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTTATAATTGTTACAAAT
Found at i:15542841 original size:27 final size:26
Alignment explanation
Indices: 15542804--15542859 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
15542794 AATCCCAAAC
* *
15542804 TTTCTTTCTTTCCTTCCCT-TTTTCTT
1 TTTCTTTCTTT-CTCCCCTGTTTTCGT
15542830 TTTCTTTCCTTTCTCCCCTGTTTTCGT
1 TTTCTTT-CTTTCTCCCCTGTTTTCGT
15542857 TTT
1 TTT
15542860 GCTCTCTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTCTTTCTTTCTCCCCTGTTTTCGT
Found at i:15542923 original size:5 final size:5
Alignment explanation
Indices: 15542913--15542945 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
15542903 TTCTTTTATT
15542913 ATATA ATATA ATATA ATAT- ATATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
15542946 CTTAACTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:15547764 original size:33 final size:31
Alignment explanation
Indices: 15547707--15547769 Score: 74
Period size: 33 Copynumber: 1.9 Consensus size: 31
15547697 AAATCCCAAA
*
15547707 TTTTCTTTCTTTCCGTCCCTTTTTCTTTTTCT
1 TTTTCTTTCTTTCCG-CCCTTTTTCGTTTTCT
15547739 TTTTCTTTCCTTTCTC-CCCTGTTTTCGTTTT
1 TTTTCTTT-CTTTC-CGCCCT-TTTTCGTTTT
15547770 GCTCTCTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 12 0.44
33 14 0.52
34 1 0.04
ACGTcount: A:0.00, C:0.29, G:0.05, T:0.67
Consensus pattern (31 bp):
TTTTCTTTCTTTCCGCCCTTTTTCGTTTTCT
Found at i:15556166 original size:18 final size:18
Alignment explanation
Indices: 15556143--15556180 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15556133 AAGATAGTTA
*
15556143 TTAAATTATTTAAAAATT
1 TTAAATCATTTAAAAATT
*
15556161 TTAAATCATTTTAAAATT
1 TTAAATCATTTAAAAATT
15556179 TT
1 TT
15556181 TATTTAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAATCATTTAAAAATT
Found at i:15583707 original size:23 final size:22
Alignment explanation
Indices: 15583655--15583707 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
15583645 TCCACGTCTT
*
15583655 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
15583677 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
15583700 TTTCTTTT
1 TTTCTTTT
15583708 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:15588213 original size:31 final size:30
Alignment explanation
Indices: 15588178--15588237 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
15588168 GGAGGTGGGA
*
15588178 TGGGAAGTGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAG-GAATAAAAATTTTAGGGGAAAAG
* * *
15588209 TGGGATGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGAATAAAAATTTTAGGGGAAAA
15588238 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (30 bp):
TGGGAAGGAATAAAAATTTTAGGGGAAAAG
Found at i:15588548 original size:9 final size:9
Alignment explanation
Indices: 15588531--15588561 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
15588521 TCGAGTTGAT
15588531 TCGAATAAC
1 TCGAATAAC
*
15588540 TCGATTAAC
1 TCGAATAAC
15588549 TCGAATAAC
1 TCGAATAAC
15588558 TCGA
1 TCGA
15588562 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:15589042 original size:187 final size:187
Alignment explanation
Indices: 15588725--15589096 Score: 699
Period size: 187 Copynumber: 2.0 Consensus size: 187
15588715 CAATACTTTG
15588725 TTTCTTTTTCTTTTTTTCGTCATCTTCATGTTCTTTTTCATTTCTCTACTCTTTTGTTGTCGTCC
1 TTTCTTTTTCTTTTTTTCGTCATCTTCATGTTCTTTTTCATTTCTCTACTCTTTTGTTGTCGTCC
* * *
15588790 AAGCTATTGAAGGGTGCTTTTTGTTCTCAATTTATTGTTTCCCTCTCCACTGTTGAGCTTGCTTG
66 AAGCTATTGAAGGGTGCTTTTTGTTCTCAATTTATTGTTTCCCACTCCACTATTGAGCCTGCTTG
15588855 CTAAATCAATGCCAATTTGCTCTTGCTTCGTACTCTTTTGACTCTCTACTAATTCTT
131 CTAAATCAATGCCAATTTGCTCTTGCTTCGTACTCTTTTGACTCTCTACTAATTCTT
*
15588912 TTTCTTTTTCTTTTTTTCGTCATCTTCATGTTCTTTTTCATTTCTCTACTCTTTTGTTGTTGTCC
1 TTTCTTTTTCTTTTTTTCGTCATCTTCATGTTCTTTTTCATTTCTCTACTCTTTTGTTGTCGTCC
*
15588977 AAGCTATTGAAGGGTGCTTTTTGTTCTCAATTTATTGTTTCCCACTCCATTATTGAGCCTGCTTG
66 AAGCTATTGAAGGGTGCTTTTTGTTCTCAATTTATTGTTTCCCACTCCACTATTGAGCCTGCTTG
15589042 CTAAATCAATGCCAATTTGCTCTTGCTTCGTACTCTTTTGACTCTCTACTAATTC
131 CTAAATCAATGCCAATTTGCTCTTGCTTCGTACTCTTTTGACTCTCTACTAATTC
15589097 GTTTCGCTAG
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
187 180 1.00
ACGTcount: A:0.15, C:0.23, G:0.12, T:0.51
Consensus pattern (187 bp):
TTTCTTTTTCTTTTTTTCGTCATCTTCATGTTCTTTTTCATTTCTCTACTCTTTTGTTGTCGTCC
AAGCTATTGAAGGGTGCTTTTTGTTCTCAATTTATTGTTTCCCACTCCACTATTGAGCCTGCTTG
CTAAATCAATGCCAATTTGCTCTTGCTTCGTACTCTTTTGACTCTCTACTAATTCTT
Found at i:15590062 original size:30 final size:32
Alignment explanation
Indices: 15590002--15590065 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
15589992 CACTTATTTT
15590002 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
15590035 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
15590066 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:15590327 original size:41 final size:41
Alignment explanation
Indices: 15590282--15590375 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
15590272 ACCGGCTCTT
15590282 AGCCTGCTAGACTTATAGTCCG-A-AATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCCGAATAAT-T-TCACCGGCATTA
*
15590323 AGCCTGCTAGACTTATAGTCTGAATAATTTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCCGAATAATTTCACCGGCATTA
15590364 AGCCTGCTAGAC
1 AGCCTGCTAGAC
15590376 GTAAAGTCTG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
41 45 0.90
42 2 0.04
43 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCCGAATAATTTCACCGGCATTA
Found at i:15590384 original size:41 final size:41
Alignment explanation
Indices: 15590311--15590388 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
15590301 CCGAAATGTG
* *
15590311 TCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAATAATT
1 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATAATT
15590352 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAT
1 TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAT
15590389 TATGTCACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATAATT
Found at i:15591481 original size:13 final size:13
Alignment explanation
Indices: 15591463--15591487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15591453 CCATCGAATG
15591463 CACACAAAATAAA
1 CACACAAAATAAA
15591476 CACACAAAATAA
1 CACACAAAATAA
15591488 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:15596603 original size:30 final size:32
Alignment explanation
Indices: 15596543--15596606 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
15596533 CACTTATTTT
15596543 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
15596576 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
15596607 ACATATCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:15596866 original size:41 final size:41
Alignment explanation
Indices: 15596821--15597017 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
15596811 ACCGGCTCTT
*
15596821 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
15596862 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
15596903 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
15596944 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
15596985 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
15597018 TAACGATAAA
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 139 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:15597212 original size:2 final size:2
Alignment explanation
Indices: 15597205--15597229 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15597195 ATACATCTGA
15597205 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
15597230 ACTTAACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15598106 original size:13 final size:13
Alignment explanation
Indices: 15598088--15598112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15598078 CCATCGAATG
15598088 CACACAAAATAAA
1 CACACAAAATAAA
15598101 CACACAAAATAA
1 CACACAAAATAA
15598113 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:15601101 original size:18 final size:18
Alignment explanation
Indices: 15601080--15601117 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
15601070 AATGACCTAG
15601080 TAAATATTAAATAATTAA
1 TAAATATTAAATAATTAA
15601098 TAAATATTAAATAATTAA
1 TAAATATTAAATAATTAA
15601116 TA
1 TA
15601118 TTTACGGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAATATTAAATAATTAA
Found at i:15615369 original size:21 final size:22
Alignment explanation
Indices: 15615345--15615391 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
15615335 TTTTTTTCTA
* *
15615345 GGTGAAAAGTT-TGATTTGATG
1 GGTGAAAAGTTAGGATGTGATG
*
15615366 GGTGAAAGGTTAGGATGTGATG
1 GGTGAAAAGTTAGGATGTGATG
15615388 GGTG
1 GGTG
15615392 TAAGGGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.26, C:0.00, G:0.43, T:0.32
Consensus pattern (22 bp):
GGTGAAAAGTTAGGATGTGATG
Found at i:15630571 original size:19 final size:20
Alignment explanation
Indices: 15630535--15630586 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
15630525 AAAAAATACA
*
15630535 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
15630554 CAAAAATTCAAAAT-ATTTAT
1 -AAAAATTCAAAATAATTTAT
15630574 AAAAATTACAAAA
1 AAAAATT-CAAAA
15630587 CCTATATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:15630921 original size:26 final size:26
Alignment explanation
Indices: 15630874--15630923 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15630864 TAACTTGAAT
* *
15630874 AATTTCATTTGATTCAACTCGACTTG
1 AATTTCATTTCACTCAACTCGACTTG
* *
15630900 AATTTCATTTCACTCGATTCGACT
1 AATTTCATTTCACTCAACTCGACT
15630924 CGAAAAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (26 bp):
AATTTCATTTCACTCAACTCGACTTG
Found at i:15637465 original size:50 final size:49
Alignment explanation
Indices: 15637335--15637471 Score: 152
Period size: 49 Copynumber: 2.8 Consensus size: 49
15637325 GATAATAACA
*
15637335 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
* * * * * **
15637384 TGCCAATGTCATATCCCAGATATGCTTTTACATGGGA-GTTCTCATAT-TGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TC-T-TGTAC
*
15637434 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
15637472 CTCTTTACCC
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
48 3 0.04
49 33 0.47
50 33 0.47
51 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC
Found at i:15643122 original size:3 final size:3
Alignment explanation
Indices: 15643114--15643150 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
15643104 ACCAACATCC
15643114 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
15643151 AGATAGTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:15646672 original size:69 final size:69
Alignment explanation
Indices: 15646525--15647006 Score: 486
Period size: 69 Copynumber: 7.0 Consensus size: 69
15646515 AAAGATAACA
* * * * *
15646525 AGCTGAGAGTTTTGCTCTCGCTAACTGTCTTGGAGGTTGTGGCTCTTCGCCTGCA-AACTTTAAT
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTG-AGAACCTTAAT
* *
15646589 ATTAT
65 ATGAC
* * * * * * * * *
15646594 AGTTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTTGCTTGAGAACATTAATA
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGAGAACCTTAATA
*
15646659 TGAT
66 TGAC
* * *
15646663 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGACTTTTTGCCT-ACGATCCTTAAT
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGA-GAACCTTAAT
15646727 ATGAC
65 ATGAC
* * * * ** * * *
15646732 AGTTGGGAGCTTTGCTCTTGCTAACTATTTTGAAGGTTGCAGCTCTTCGTCTGCGAACCTTAATA
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGAGAACCTTAATA
15646797 TGAC
66 TGAC
* * *
15646801 AGCTGGGAGCTTTGCTCTCGTTAATTGTTTTGGAGGTTGCGGCT-TTTCGCCT-ACGAACCTTAA
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTT-GCCTGA-GAACCTTAA
15646864 TATGAC
64 TATGAC
* * * * * *
15646870 AACTGAGAGCCTTGCTCTCGCTAACTATTTTAGAGGTTGTGGCTCTTTGCCTGCGAACCTTAATA
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGAGAACCTTAATA
15646935 TGAC
66 TGAC
* ** * * * * *
15646939 AGTTAAGAGCTTTGCTCTCACTAACTATTTTGGAGGTTGTGGCTCTTTACCTGCGAATCTTAATA
1 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGAGAACCTTAATA
15647004 TGA
66 TGA
15647007 AAAAAATGCT
Statistics
Matches: 340, Mismatches: 66, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
68 4 0.01
69 333 0.98
70 3 0.01
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (69 bp):
AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTTGCCTGAGAACCTTAATA
TGAC
Found at i:15646777 original size:138 final size:138
Alignment explanation
Indices: 15646525--15647006 Score: 536
Period size: 138 Copynumber: 3.5 Consensus size: 138
15646515 AAAGATAACA
* * * * *
15646525 AGCTGAGAGTTTTGCTCTCGCTAACTGTCTTGGAGGTTGTGGCTCTTCGCCTGCAAACTTTAATA
1 AGCTGAGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTCGCCTACGAACCTTAATA
* * * * * * * * * * *
15646590 TTATAGTTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTTGCTTGAGAACATT
66 TGACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGAAGGTTGCGGCTCTTTGCTTGCGAACCTT
*
15646655 AATATGAT
131 AATATGAC
* * * * *
15646663 AGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGACTTTTTGCCTACGATCCTTAATA
1 AGCTGAGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTCGCCTACGAACCTTAATA
* * *
15646728 TGACAGTTGGGAGCTTTGCTCTTGCTAACTATTTTGAAGGTTGCAGCTCTTCG-TCTGCGAACCT
66 TGACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGAAGGTTGCGGCTCTTTGCT-TGCGAACCT
15646792 TAATATGAC
130 TAATATGAC
* * * * *
15646801 AGCTGGGAGCTTTGCTCTCGTTAATTGTTTTGGAGGTTGCGGCTTTTCGCCTACGAACCTTAATA
1 AGCTGAGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTCGCCTACGAACCTTAATA
** * * * *
15646866 TGACAACTGAGAGCCTTGCTCTCGCTAACTATTTT-AGAGGTTGTGGCTCTTTGCCTGCGAACCT
66 TGACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGA-AGGTTGCGGCTCTTTGCTTGCGAACCT
15646930 TAATATGAC
130 TAATATGAC
* * * * ** * *
15646939 AGTTAAGAGCTTTGCTCTCACTAACTATTTTGGAGGTTGTGGCTCTTTACCTGCGAATCTTAATA
1 AGCTGAGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTCGCCTACGAACCTTAATA
15647004 TGA
66 TGA
15647007 AAAAAATGCT
Statistics
Matches: 288, Mismatches: 53, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
137 2 0.01
138 286 0.99
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (138 bp):
AGCTGAGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGGCTCTTCGCCTACGAACCTTAATA
TGACAGTTGGGAGCTTTGCTCTCGCTAACTATTTTGAAGGTTGCGGCTCTTTGCTTGCGAACCTT
AATATGAC
Found at i:15646890 original size:207 final size:207
Alignment explanation
Indices: 15646530--15647006 Score: 598
Period size: 207 Copynumber: 2.3 Consensus size: 207
15646520 TAACAAGCTG
* * * * * * *
15646530 AGAGTTTTGCTCTCGCTAACTGTCTTGGAGGTTGTGGCTCTTCGCCTGCAAACTTTAATATTATA
1 AGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGTGGCTCTTCGCCTGCGAACCTTAATATGACA
* *
15646595 GTTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTTGCTTGAGAACATTAATAT
66 GCTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTTGCCTGAGAACATTAATAT
* * * * * * * *
15646660 GATAGCTGGGAGCTTTGCTCTCGCTAACTGTTTTGGAGGTTGTGACTTTTTGCCTACGATCCTTA
131 GACAACTGAGAGCCTTGCTCTCGCTAACTATTTTAGAGGTTGTGACTCTTTGCCTACGAACCTTA
*
15646725 ATATGACAGTTG
196 ATATGACAGTTA
* * * ** *
15646737 GGAGCTTTGCTCTTGCTAACTATTTTGAAGGTTGCAGCTCTTCGTCTGCGAACCTTAATATGACA
1 AGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGTGGCTCTTCGCCTGCGAACCTTAATATGACA
* * ** * *
15646802 GCTGGGAGCTTTGCTCTCGTTAATTGTTTTGGAGGTTGCGGCT-TTTCGCCT-ACGAACCTTAAT
66 GCTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTT-GCCTGA-GAACATTAAT
* *
15646865 ATGACAACTGAGAGCCTTGCTCTCGCTAACTATTTTAGAGGTTGTGGCTCTTTGCCTGCGAACCT
129 ATGACAACTGAGAGCCTTGCTCTCGCTAACTATTTTAGAGGTTGTGACTCTTTGCCTACGAACCT
15646930 TAATATGACAGTTA
194 TAATATGACAGTTA
* ** *
15646944 AGAGCTTTGCTCTCACTAACTATTTTGGAGGTTGTGGCTCTTTACCTGCGAATCTTAATATGA
1 AGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGTGGCTCTTCGCCTGCGAACCTTAATATGA
15647007 AAAAAATGCT
Statistics
Matches: 226, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
206 4 0.02
207 222 0.98
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (207 bp):
AGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGTGGCTCTTCGCCTGCGAACCTTAATATGACA
GCTAGGAGCTTTGATCTCACTAATTGTTTTGGAGATTGCGGCTCTTTGCCTGAGAACATTAATAT
GACAACTGAGAGCCTTGCTCTCGCTAACTATTTTAGAGGTTGTGACTCTTTGCCTACGAACCTTA
ATATGACAGTTA
Found at i:15650624 original size:3 final size:3
Alignment explanation
Indices: 15650616--15650641 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15650606 TGGGGTGGAT
15650616 TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TC
15650642 GTCGCATAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
TCC
Found at i:15652266 original size:22 final size:21
Alignment explanation
Indices: 15652239--15652281 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
15652229 AACTACCCAA
15652239 TTAACCCATC-AGCCCAACTAAC
1 TTAACCCA-CAAGCCCAA-TAAC
15652261 TTAACCCACAAGCCCAATAAC
1 TTAACCCACAAGCCCAATAAC
15652282 AATAGGCCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.40, G:0.05, T:0.16
Consensus pattern (21 bp):
TTAACCCACAAGCCCAATAAC
Found at i:15655483 original size:46 final size:46
Alignment explanation
Indices: 15655405--15655681 Score: 428
Period size: 46 Copynumber: 6.0 Consensus size: 46
15655395 CATGACAAAG
* * ** * *
15655405 TGTGAAAAGTAGGTATGATGTTTCAATGAAGAAAACAATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
15655451 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
*
15655497 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
* *
15655543 TGTGAAAAGTAGGTATGGTGTTTCGGTAAAAAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
* *
15655589 TGTGAAAAGTAGGTATGGTGTTTCAGTAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
** *
15655635 TGTGAAAAGTAGGTATGGTATTTCCATGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
15655681 T
1 T
15655682 ATAGCATTGT
Statistics
Matches: 215, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 215 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGT
Found at i:15658515 original size:16 final size:16
Alignment explanation
Indices: 15658496--15658526 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15658486 AGAAAATGAG
*
15658496 AAGAAGAGATAAAAAA
1 AAGAAGAAATAAAAAA
15658512 AAGAAGAAATAAAAA
1 AAGAAGAAATAAAAA
15658527 GAACCAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (16 bp):
AAGAAGAAATAAAAAA
Found at i:15662237 original size:24 final size:24
Alignment explanation
Indices: 15662210--15662261 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
15662200 TTAGTAAGTC
*
15662210 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* * * *
15662234 AAATATATTGTACTCATAAATACT
1 AAATAAACTATACTAATAAATACT
15662258 AAAT
1 AAAT
15662262 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15664200 original size:24 final size:24
Alignment explanation
Indices: 15664173--15664224 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15664163 TTAGTAAGTC
*
15664173 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15664197 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15664221 AAAT
1 AAAT
15664225 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15665108 original size:19 final size:19
Alignment explanation
Indices: 15665074--15665118 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
15665064 AATGATAATT
*
15665074 AAATTAAAGTTAATTAAACC
1 AAATT-AAGGTAATTAAACC
*
15665094 AAATTAAGGTAATTAAACT
1 AAATTAAGGTAATTAAACC
15665113 AAATTA
1 AAATTA
15665119 CATAGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (19 bp):
AAATTAAGGTAATTAAACC
Found at i:15665316 original size:96 final size:96
Alignment explanation
Indices: 15665152--15665345 Score: 343
Period size: 96 Copynumber: 2.0 Consensus size: 96
15665142 AGCTTGAGAT
*
15665152 AATGGAAAATTCCACTATCTTCTTCTTCAAGCACCATCCACCATTAATAAAACCAAAGAAAAATC
1 AATGGAAAATTCCACTATCTTCTTCTTCAAGCACCATCCACCATTAATAAAACCAAAGAAAAACC
* * *
15665217 CTTCCAAGCTTTGCAGCATTTGGCCAAGGAG
66 CTTCCAAGCATTGCAGCATTCGACCAAGGAG
*
15665248 AATGGAAAATTCCACTATCTTCTTCTTCAAGCACCGTCCACCATTAATAAAACCAAAGAAAAACC
1 AATGGAAAATTCCACTATCTTCTTCTTCAAGCACCATCCACCATTAATAAAACCAAAGAAAAACC
15665313 CTTCCAAGCATTGCAGCATTCGACCAAGGAG
66 CTTCCAAGCATTGCAGCATTCGACCAAGGAG
15665344 AA
1 AA
15665346 ACTAAGGTAA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (96 bp):
AATGGAAAATTCCACTATCTTCTTCTTCAAGCACCATCCACCATTAATAAAACCAAAGAAAAACC
CTTCCAAGCATTGCAGCATTCGACCAAGGAG
Found at i:15666972 original size:24 final size:24
Alignment explanation
Indices: 15666911--15666980 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
15666901 ATGTAACTTG
* *
15666911 CGAACCCCTATCACCAAACACCTA
1 CGAACCCCTATCACTAAATACCTA
* * * *
15666935 CGAATCCTTCTCACTAGATACCTA
1 CGAACCCCTATCACTAAATACCTA
*
15666959 TGAACCCCTATCACTAAATACC
1 CGAACCCCTATCACTAAATACC
15666981 CCCTATCATC
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.34, C:0.39, G:0.06, T:0.21
Consensus pattern (24 bp):
CGAACCCCTATCACTAAATACCTA
Found at i:15668002 original size:14 final size:14
Alignment explanation
Indices: 15667983--15668012 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15667973 TGATTATTTT
15667983 TAATCTAATTTAAC
1 TAATCTAATTTAAC
15667997 TAATCTAATTTAAC
1 TAATCTAATTTAAC
15668011 TA
1 TA
15668013 CGAACGCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:15671409 original size:5 final size:5
Alignment explanation
Indices: 15671399--15671434 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
15671389 TAAACAAATC
*
15671399 AATAA AATAA AATAA AGT-A AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
15671435 AAGAATGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 3 0.11
5 25 0.89
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:15671420 original size:14 final size:14
Alignment explanation
Indices: 15671403--15671433 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15671393 CAAATCAATA
*
15671403 AAATAAAATAAAGT
1 AAATAAAATAAAAT
15671417 AAATAAAATAAAAT
1 AAATAAAATAAAAT
15671431 AAA
1 AAA
15671434 AAAGAATGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:15672434 original size:115 final size:115
Alignment explanation
Indices: 15672285--15672501 Score: 301
Period size: 115 Copynumber: 1.9 Consensus size: 115
15672275 GATTTTTAGA
* * * *
15672285 AAAATTAAGTCCTAGGATCCACACGGCCAAGGACATGCCCATGTGTCCAAGTCACGTGGGTCATA
1 AAAACTAAGTCCTAGGATCCACACAGCCAAGGACACGCCCATGTGTCCAAGCCACGTGGGTCATA
* * *
15672350 TGGCCATTTCGCCAGGCCGTGTAACTCACTGTCGAATTTCTTAAAATTTT
66 TGGCCATGTCGCCAGGCCATATAACTCACTGTCGAATTTCTTAAAATTTT
** * * **
15672400 AAAACTAAGT-CTCAGGATCCACACAGCCAAGGACACGTTCATGTGTCTAGGCCGTGTGGGTCAT
1 AAAACTAAGTCCT-AGGATCCACACAGCCAAGGACACGCCCATGTGTCCAAGCCACGTGGGTCAT
15672464 ATGGCCATGTCGCCAGGCCATATAACTCACTGTCGAAT
65 ATGGCCATGTCGCCAGGCCATATAACTCACTGTCGAAT
15672502 CCCTTTTAGT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
114 2 0.02
115 86 0.98
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (115 bp):
AAAACTAAGTCCTAGGATCCACACAGCCAAGGACACGCCCATGTGTCCAAGCCACGTGGGTCATA
TGGCCATGTCGCCAGGCCATATAACTCACTGTCGAATTTCTTAAAATTTT
Found at i:15674817 original size:43 final size:42
Alignment explanation
Indices: 15674769--15674879 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
15674759 TGGCTACGTG
* * ** *
15674769 TAAGACCATGTCTGAGATATTGGCATCGTTATATGATTTCGTA
1 TAAGACCATGTCTGGGATA-TGGCATCGATATATGATAACATA
* * * *
15674812 TAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGATA-TGGCATCGATATATGATAACATA
*
15674855 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATGTCTGGGATATGGCAT
15674880 TGTATGAGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 6 0.11
43 49 0.89
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGGATATGGCATCGATATATGATAACATA
Found at i:15681083 original size:31 final size:32
Alignment explanation
Indices: 15681026--15681086 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
15681016 AATTTTAATT
*
15681026 CTAATTATTTTAATATTTAATTTTAATTATCC
1 CTAATTATTTTAATATTTAATCTTAATTATCC
*
15681058 CTAATTA-TTTAATTTTCTAA-CTTAATTAT
1 CTAATTATTTTAATATT-TAATCTTAATTAT
15681087 AGTTCCTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (32 bp):
CTAATTATTTTAATATTTAATCTTAATTATCC
Found at i:15685558 original size:15 final size:15
Alignment explanation
Indices: 15685535--15685571 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
15685525 GATATATAAT
15685535 TTAATAATATGAATTA
1 TTAA-AATATGAATTA
15685551 TTAAAATATGAATTA
1 TTAAAATATGAATTA
*
15685566 ATAAAA
1 TTAAAA
15685572 ATTATAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (15 bp):
TTAAAATATGAATTA
Found at i:15685574 original size:25 final size:24
Alignment explanation
Indices: 15685495--15685576 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 24
15685485 TAATATAATT
15685495 ATTATTAAATATAATTTAATAAAAA
1 ATTATTAAATATAATTTAAT-AAAA
* * *
15685520 ATAATGATATATAATTTAATAATATGA
1 ATTATTAAATATAATTTAATAA-A--A
15685547 ATTATTAAAATATGAA-TTAATAAAA
1 ATTATT-AAATAT-AATTTAATAAAA
15685572 ATTAT
1 ATTAT
15685577 AACATAATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 2 0.04
25 24 0.52
27 6 0.13
28 12 0.26
29 2 0.04
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
ATTATTAAATATAATTTAATAAAA
Found at i:15702596 original size:37 final size:37
Alignment explanation
Indices: 15702545--15702652 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 37
15702535 ATTTCAAAAA
*
15702545 TAATATTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATAT
*
15702581 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAATAT
15702618 TAAAGTGATTATCTTAATA--TTAA-ATTAAATTTAAT
1 T-AA-T-ATTATCTTAATAGTTTAATATTAAATTTAAT
15702653 GTTTATCTTG
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
36 18 0.30
37 26 0.43
38 4 0.07
39 12 0.20
40 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.52
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATAT
Found at i:15702639 original size:31 final size:29
Alignment explanation
Indices: 15702604--15702661 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
15702594 AATAGTATTT
*
15702604 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
15702635 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
15702662 GTAGATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:15702734 original size:20 final size:21
Alignment explanation
Indices: 15702695--15702735 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
15702685 AATAAGATTT
15702695 AATATTAAATTTAATCTAATA
1 AATATTAAATTTAATCTAATA
* *
15702716 AATATTATA-TTAATTTAATA
1 AATATTAAATTTAATCTAATA
15702736 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
AATATTAAATTTAATCTAATA
Found at i:15702879 original size:31 final size:31
Alignment explanation
Indices: 15702844--15702905 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
15702834 TGTAGAGAGA
*
15702844 AAATTATCTAAAGAGATTATTTTAGAAAATT
1 AAATTATCTAAAGAGATTATTCTAGAAAATT
* *
15702875 AAATTCTTTAAAGAGATTATTCTAGAAAATT
1 AAATTATCTAAAGAGATTATTCTAGAAAATT
15702906 TGTAGATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.39
Consensus pattern (31 bp):
AAATTATCTAAAGAGATTATTCTAGAAAATT
Found at i:15705394 original size:14 final size:14
Alignment explanation
Indices: 15705377--15705406 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15705367 TCTTGTAGTC
15705377 ATAGAACCTTCGTT
1 ATAGAACCTTCGTT
15705391 ATAGAACCTTCGTT
1 ATAGAACCTTCGTT
15705405 AT
1 AT
15705407 TTATTGAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (14 bp):
ATAGAACCTTCGTT
Found at i:15705906 original size:73 final size:72
Alignment explanation
Indices: 15705763--15705939 Score: 228
Period size: 73 Copynumber: 2.4 Consensus size: 72
15705753 CGCTGAAAAT
* ** * * *
15705763 AAGAATTAGCGGCGTTTTCCAGAAAGCGCCACAAAAAACCTAAGCCCAACGACGCTGTTTACCGA
1 AAGATTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCAGTTTACCAA
15705828 GCTTTCG
66 GCTTTCG
* * *
15705835 AAGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCAGTTTTCTA
1 AAGATTTAGCGGCGTTTTTAAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCAGTTTACCA
15705900 AGCTTTCG
65 AGCTTTCG
** * *
15705908 GGGATTTAACAGCGTTTTTAAGAAAGCGCCGC
1 AAGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
15705940 TAATGCTCAG
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
72 28 0.31
73 63 0.69
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (72 bp):
AAGATTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCAGTTTACCAA
GCTTTCG
Found at i:15706884 original size:192 final size:193
Alignment explanation
Indices: 15706577--15706999 Score: 493
Period size: 192 Copynumber: 2.2 Consensus size: 193
15706567 TAGAATTGTT
* * *
15706577 TTTTTAATGTTCATGTTAATG-AGCATATAGACTAAGTTTGTAATCTATAATGGGTTTAAGTCAT
1 TTTTT-ATGTTGATGTTAATGAAACA-ATAGACTAAG-TTGTAATCTATAATGGGTTCAAGTCAT
* ** * *
15706641 GGTTTTCATTTGGAGCTTTGTGATTAAAACACTATTATTACTTGAATGGAAATGTATTTGCATTT
63 GGTTTTCATTTGGAGCTTTGTGATTAAAACACAACAATTACTTGAATGGAAATGCACTTGCATTT
* * * * * *
15706706 GT-GTATCCTGCAATGCTT-TTTAATTGAACTTTGGGGTTGGAATTGTTATTAGGAAGTAATTGA
128 -TCATATCCTGCAAAGCTTCTTT-AGTCAACTTTGGAGTTGAAATTGTTATTAGGAAGTAATTGA
15706769 TG-
191 TGA
* * *
15706771 TTTTTATGTTGATGTTAATGAATACAATAGACTAAGTTG-AATTTTTTATGGGTTCAAGTCATGG
1 TTTTTATGTTGATGTTAATGAA-ACAATAGACTAAGTTGTAATCTATAATGGGTTCAAGTCATGG
* **
15706835 TTTTCATTTGGA-CTTTGTGATTACAACACAACAATTTACTTGAATGGAAATGCACTTGTGTTTT
65 TTTTCATTTGGAGCTTTGTGATTAAAACACAACAA-TTACTTGAATGGAAATGCACTTGCATTTT
* *
15706899 CATATCCTGCAAAGCTTCTTTAGTCAATTTTGGAGTTGAAATTGTTATTAGGATGTAATTGATGA
129 CATATCCTGCAAAGCTTCTTTAGTCAACTTTGGAGTTGAAATTGTTATTAGGAAGTAATTGATGA
* * *
15706964 TTTTT-T-ATGATGTTAATGAACATAATAGACCAAGTT
1 TTTTTATGTTGATGTTAATGAA-ACAATAGACTAAGTT
15707000 TGGGACATTT
Statistics
Matches: 197, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
191 45 0.23
192 109 0.55
193 25 0.13
194 16 0.08
195 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (193 bp):
TTTTTATGTTGATGTTAATGAAACAATAGACTAAGTTGTAATCTATAATGGGTTCAAGTCATGGT
TTTCATTTGGAGCTTTGTGATTAAAACACAACAATTACTTGAATGGAAATGCACTTGCATTTTCA
TATCCTGCAAAGCTTCTTTAGTCAACTTTGGAGTTGAAATTGTTATTAGGAAGTAATTGATGA
Found at i:15708038 original size:43 final size:43
Alignment explanation
Indices: 15707977--15708280 Score: 353
Period size: 43 Copynumber: 7.1 Consensus size: 43
15707967 GCTAGTGGCA
* * * *
15707977 TTTGTGATAAAAGCGCCGCTAAAGGTAATGGTTTTTAGCGACG
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
* * * *
15708020 TTTGTGATAAAAGTGCCGCTAAAGGTAATGGTCTTTAGCGGTG
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
* * *
15708063 TTTGTGAGTAAAAGCGCCGCTAAAGGTCATGTTCTTTCGTGGCG
1 TTTGTGA-TAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
* **
15708107 TTTGTGATAAAAGCGTCGCTAAAATTCATGATCTTTAGCGGCG
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
* * *
15708150 TTTGTGGGT-AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCG
1 TTTGT-GATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
15708193 TTTGTGAT-AAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
1 TTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
* * * * * *
15708235 TTTGTGGGT-GAGGCGCCACTAAAGGTCATGTTCTATAGCGGCG
1 TTTGT-GATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
15708278 TTT
1 TTT
15708281 TTTCTCATAA
Statistics
Matches: 229, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
42 39 0.17
43 151 0.66
44 39 0.17
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
TTTGTGATAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCG
Found at i:15708238 original size:85 final size:86
Alignment explanation
Indices: 15707986--15708280 Score: 387
Period size: 85 Copynumber: 3.4 Consensus size: 86
15707976 ATTTGTGATA
* * * * *
15707986 AAAGCGCCGCTAAAGGTAATGGTT-TTTAGCGACGTTTGTGATAAAAGTGCCGCTAAAGGTAATG
1 AAAGCGCCGCTAAAGGTCAT-GTTCTATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATG
* * *
15708050 GTCTTTAGCGGTGTTTGTGAGT
65 ATCTTTAGCGGCGTTTGTGGGT
* * * * **
15708072 AAAAGCGCCGCTAAAGGTCATGTTCTTTCGTGGCGTTTGTGATAAAAGCGTCGCTAAAATTCATG
1 -AAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATG
15708137 ATCTTTAGCGGCGTTTGTGGGT
65 ATCTTTAGCGGCGTTTGTGGGT
* *
15708159 AAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGAT-AAAGCGCCGCTAAAGGTCATGA
1 AAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGA
15708223 TCTTTAGCGGCGTTTGTGGGT
66 TCTTTAGCGGCGTTTGTGGGT
* * *
15708244 GAGGCGCCACTAAAGGTCATGTTCTATAGCGGCGTTT
1 AAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTT
15708281 TTTCTCATAA
Statistics
Matches: 182, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
85 72 0.40
86 40 0.22
87 70 0.38
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGGTCATGTTCTATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGA
TCTTTAGCGGCGTTTGTGGGT
Found at i:15708381 original size:21 final size:21
Alignment explanation
Indices: 15708355--15708399 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
15708345 TTTAGCGGCG
*
15708355 CTAAAAAACACCGCTAAAGGC
1 CTAAAAAACACCGCTAAAAGC
*
15708376 CTAAAAAACGCCGCTAAAAGC
1 CTAAAAAACACCGCTAAAAGC
15708397 CTA
1 CTA
15708400 TTTTGGTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.29, G:0.13, T:0.11
Consensus pattern (21 bp):
CTAAAAAACACCGCTAAAAGC
Found at i:15709699 original size:14 final size:15
Alignment explanation
Indices: 15709665--15709703 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
15709655 ATAATTATTA
*
15709665 ATTTAATATTATAACT
1 ATTTAA-ATAATAACT
15709681 ATTTAAATAATAA-T
1 ATTTAAATAATAACT
15709695 ATTTAAATA
1 ATTTAAATA
15709704 GTTATAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 6 0.27
16 6 0.27
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTTAAATAATAACT
Found at i:15709712 original size:23 final size:23
Alignment explanation
Indices: 15709668--15709712 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15709658 ATTATTAATT
* *
15709668 TAATATTATAACTATTTAAATAA
1 TAATATTATAAATAGTTAAATAA
15709691 TAATATT-TAAATAGTTATAATA
1 TAATATTATAAATAGTTA-AATA
15709713 CCTTTTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATATTATAAATAGTTAAATAA
Found at i:15723543 original size:36 final size:36
Alignment explanation
Indices: 15723496--15723566 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
15723486 ACAACTCATG
*
15723496 TAAATATAGATTCCTAATCTCTTATGATGACCCATA
1 TAAATATAGATTCCCAATCTCTTATGATGACCCATA
15723532 TAAATATAGATTCCCAATCTCTTATGATGACCCAT
1 TAAATATAGATTCCCAATCTCTTATGATGACCCAT
15723567 CTTTGTGCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (36 bp):
TAAATATAGATTCCCAATCTCTTATGATGACCCATA
Found at i:15731189 original size:153 final size:153
Alignment explanation
Indices: 15730784--15731189 Score: 551
Period size: 153 Copynumber: 2.7 Consensus size: 153
15730774 TAGTTCGCAT
* * * *
15730784 ATAGTACTTTACATAATCAGTACGCATATACTTTGTATAGACATTTCACACATATAACTTTACGT
1 ATAGAACTTTACATAATCAGTACGCATATACTTTGTATAGACAGTTCACACATAGAACTTTACAT
* * * * * *
15730849 GATTAGTACGCACACACTTTGTATAGACAGTTCACATATAGAACTTTACATAATCAGTATGCACA
66 AATCAGTACGCACATACTTTGAATAGACAGTTCATACATAGAACTTTACATAATCAGTATGCACA
*
15730914 TACTTTGCATAGACAATTCATAC
131 TACTTTGCATACACAATTCATAC
* * ** *
15730937 ATAAAACTTTACATAATCAGTACGCATACACTTTCCATAGACAGTTCACACAAAGAACTTTACAT
1 ATAGAACTTTACATAATCAGTACGCATATACTTTGTATAGACAGTTCACACATAGAACTTTACAT
* * * *
15731002 AATCAATACGCATATACTTTGAATAGATAGTTCATACATAGAACTTTACATAATGAGTATGCACA
66 AATCAGTACGCACATACTTTGAATAGACAGTTCATACATAGAACTTTACATAATCAGTATGCACA
*
15731067 TACTTTGCATACACACTTCATAC
131 TACTTTGCATACACAATTCATAC
* * * * **
15731090 ATAGAACTTTACATAATTAGTACGTATATACTTTGTATAAATAGTTCATGCATAGAACTTTACAT
1 ATAGAACTTTACATAATCAGTACGCATATACTTTGTATAGACAGTTCACACATAGAACTTTACAT
* *
15731155 AATCAGTACGCACATACTTTGCATAGCCAGTTCAT
66 AATCAGTACGCACATACTTTGAATAGACAGTTCAT
15731190 GGACCCTTCC
Statistics
Matches: 216, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
153 216 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (153 bp):
ATAGAACTTTACATAATCAGTACGCATATACTTTGTATAGACAGTTCACACATAGAACTTTACAT
AATCAGTACGCACATACTTTGAATAGACAGTTCATACATAGAACTTTACATAATCAGTATGCACA
TACTTTGCATACACAATTCATAC
Found at i:15731190 original size:51 final size:51
Alignment explanation
Indices: 15730784--15731189 Score: 479
Period size: 51 Copynumber: 8.0 Consensus size: 51
15730774 TAGTTCGCAT
* * * * *
15730784 ATAGTACTTTACATAATCAGTACGCATATACTTTGTATAGACATTTCACAC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* * * * * * * *
15730835 ATATAACTTTACGTGATTAGTACGCACACACTTTGTATAGACAGTTCACAT
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* *
15730886 ATAGAACTTTACATAATCAGTATGCACATACTTTGCATAGACAATTCATAC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* * * * *
15730937 ATAAAACTTTACATAATCAGTACGCATACACTTTCCATAGACAGTTCACAC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* * * * *
15730988 AAAGAACTTTACATAATCAATACGCATATACTTTGAATAGATAGTTCATAC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* * * *
15731039 ATAGAACTTTACATAATGAGTATGCACATACTTTGCATACACACTTCATAC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
* * * * * * *
15731090 ATAGAACTTTACATAATTAGTACGTATATACTTTGTATAAATAGTTCATGC
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
*
15731141 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGCCAGTTCAT
1 ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCAT
15731190 GGACCCTTCC
Statistics
Matches: 296, Mismatches: 59, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 296 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (51 bp):
ATAGAACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCATAC
Found at i:15742630 original size:40 final size:40
Alignment explanation
Indices: 15742581--15742719 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
15742571 AACACACCAG
* *
15742581 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * * *
15742621 TTTGACACCCAGTGTCTCATCAGTTAAACCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * *
15742659 -TTGGCACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAA
1 TTTGACACCCAGTGCCTCATCGGA-TAATCCGAAGTAATAA
* *
15742699 ATTGACACCCAGTGTCTCATC
1 TTTGACACCCAGTGCCTCATC
15742720 AACTCGAAGT
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 18 0.22
38 12 0.15
39 1 0.01
40 31 0.39
41 18 0.22
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
Found at i:15742708 original size:41 final size:41
Alignment explanation
Indices: 15742586--15742719 Score: 152
Period size: 41 Copynumber: 3.4 Consensus size: 41
15742576 ACCAGTTTGG
* * * *
15742586 CACCCAGTGCCTCATCGGA-TAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
* * * *
15742626 CACCCAGTGTCTCATC-AGTTAAACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
15742663 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
*
15742704 CACCCAGTGTCTCATC
1 CACCCAGTGCCTCATC
15742720 AACTCGAAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
37 22 0.29
38 8 0.11
39 2 0.03
40 20 0.26
41 24 0.32
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
Found at i:15747489 original size:9 final size:9
Alignment explanation
Indices: 15747475--15747501 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
15747465 ATTTAATTTT
15747475 AATCCAACC
1 AATCCAACC
15747484 AATCCAACC
1 AATCCAACC
15747493 AATCCAACC
1 AATCCAACC
15747502 CTTTTGGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.11
Consensus pattern (9 bp):
AATCCAACC
Found at i:15748117 original size:44 final size:43
Alignment explanation
Indices: 15747987--15748109 Score: 194
Period size: 44 Copynumber: 2.8 Consensus size: 43
15747977 AAGGTAAATC
* *
15747987 CAACAACCCAAGATTATCATCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACTCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
15748030 CAACAA-TCTAAGATTATCTTCTCCTCTTTTTTAAATTCTTTTTT
1 CAACAACTC-AAGATTATCTTCTCCTC-TTTTTAAATTCTTTTTT
*
15748074 CAACAACTCAAGATTATCTTCTCCTCTTTTCAAATT
1 CAACAACTCAAGATTATCTTCTCCTCTTTTTAAATT
15748110 TATTTTTTTA
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
42 1 0.01
43 31 0.42
44 40 0.54
45 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.02, T:0.46
Consensus pattern (43 bp):
CAACAACTCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
Found at i:15765195 original size:243 final size:245
Alignment explanation
Indices: 15764944--15765406 Score: 589
Period size: 243 Copynumber: 1.9 Consensus size: 245
15764934 TTATTAACAT
* *
15764944 ATATTATTGTTTATTATTATACTGGTTGAAATATACTTTAAGTGCCTATACTTTTT-GTACACTT
1 ATATTATTGTTTATTATTATACTAGTTGAAATATACTCTAAGTGCCTATA-TTTTTCGTACACTT
*
15765008 GAAAGTTAACCCTCATACTATACTATATAATGTTATATCATATCATATAATAT-ATAATATAT-T
65 GAAAGTTAACCCTCATACTATACTATATAATGCTATATCATATCATATAATATCATAATATATAT
** * * * **
15765071 -AATAGTTTA-TATATATGCATCAATGAT-TG-AACATTATATCTTTTTATTATAATCTATAATA
130 GAATAAATGATTAAACAT-CAT-AAT-ATATGTAACACGATATC-TTTTATTATAATCTATAATA
15765132 TAATAATAGTTATATATAATAGTAGTACACACACATATATATATATATATATTAC
191 TAATAATAGTTATATATAATAGTAGTACACACACATATATATATATATATATTAC
* * * * *
15765187 ATATTATTGTTTATTGTTATAGTAGTTGAAATATGCTCTAAGTTCCTATATTTTTCGTACATTTG
1 ATATTATTGTTTATTATTATACTAGTTGAAATATACTCTAAGTGCCTATATTTTTCGTACACTTG
* * * * * * *
15765252 AAAGTTAGCTCTCCTACTATATTATATGATGCTATATCATATTATATCATATCATAATATATATG
66 AAAGTTAACCCTCATACTATACTATATAATGCTATATCATATCATATAATATCATAATATATATG
* * * *
15765317 CATAAATGATTAAACATTATAATATCATGTAATACGATATCTTTTATTATAATCTATATTATAAT
131 AATAAATGATTAAACATCATAATAT-ATGTAACACGATATCTTTTATTATAATCTATAATATAAT
15765382 AATAGTTATATATAATAGTAGTACA
195 AATAGTTATATATAATAGTAGTACA
15765407 TTATATATAT
Statistics
Matches: 186, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
242 5 0.03
243 96 0.52
244 11 0.06
245 4 0.02
246 57 0.31
247 13 0.07
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (245 bp):
ATATTATTGTTTATTATTATACTAGTTGAAATATACTCTAAGTGCCTATATTTTTCGTACACTTG
AAAGTTAACCCTCATACTATACTATATAATGCTATATCATATCATATAATATCATAATATATATG
AATAAATGATTAAACATCATAATATATGTAACACGATATCTTTTATTATAATCTATAATATAATA
ATAGTTATATATAATAGTAGTACACACACATATATATATATATATATTAC
Found at i:15765397 original size:16 final size:17
Alignment explanation
Indices: 15765371--15765403 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15765361 TATTATAATC
15765371 TATATTATAATAATAGT
1 TATATTATAATAATAGT
*
15765388 TATA-TATAATAGTAGT
1 TATATTATAATAATAGT
15765404 ACATTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (17 bp):
TATATTATAATAATAGT
Found at i:15766781 original size:14 final size:11
Alignment explanation
Indices: 15766752--15766791 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
15766742 AAGAAAAAAA
15766752 TTGTTGTTTTC
1 TTGTTGTTTTC
15766763 TTGTTGTTTTC
1 TTGTTGTTTTC
* *
15766774 CTGCTGTTTTC
1 TTGTTGTTTTC
*
15766785 TTATTGT
1 TTGTTGT
15766792 CTTGTTGTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.03, C:0.12, G:0.17, T:0.68
Consensus pattern (11 bp):
TTGTTGTTTTC
Found at i:15776763 original size:35 final size:36
Alignment explanation
Indices: 15776715--15776791 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 36
15776705 ATTTGTTAGA
*
15776715 TATTGATTATGTTTTAACCTTATTGGATATTGAATT
1 TATTGATTATGTTTTAACCTTATTGGATATTGAAAT
* *
15776751 TATT-ATTATGTTTTAAGCTTGTTGGATATTGAAAT
1 TATTGATTATGTTTTAACCTTATTGGATATTGAAAT
15776786 TATTGA
1 TATTGA
15776792 CAATGACAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 32 0.86
36 5 0.14
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.52
Consensus pattern (36 bp):
TATTGATTATGTTTTAACCTTATTGGATATTGAAAT
Found at i:15778167 original size:14 final size:14
Alignment explanation
Indices: 15778144--15778181 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
15778134 ACAGAAAAGT
15778144 AAAACATTTTCCAG
1 AAAACATTTTCCAG
* *
15778158 AAATCATTTTCCGG
1 AAAACATTTTCCAG
15778172 AAAACATTTT
1 AAAACATTTT
15778182 ACTGCCAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (14 bp):
AAAACATTTTCCAG
Found at i:15779537 original size:43 final size:43
Alignment explanation
Indices: 15779484--15779775 Score: 345
Period size: 43 Copynumber: 6.8 Consensus size: 43
15779474 TTCTAGAAAT
* *
15779484 AAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTTCCAA
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * *
15779527 AAACACCGCTATAGGTCAGGACCTTTAGTGGCGC-TTTTGCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * *
15779569 AAACGCCACTAAAGCTCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * * *
15779612 AAATGCTGCTATAGATCAGGACCTTTAGCGACACTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
*
15779655 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * * * *
15779698 AAGCACCGCTATAGATCAAGACCTTTAGTGGCCCTTTTTTCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * *
15779741 AAACGCCGCTATAGACCA-AACCTTTAGCGACGCTT
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTT
15779776 CTCGCAAAAA
Statistics
Matches: 210, Mismatches: 38, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
42 48 0.23
43 162 0.77
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
Found at i:15779649 original size:128 final size:129
Alignment explanation
Indices: 15779484--15779785 Score: 365
Period size: 128 Copynumber: 2.4 Consensus size: 129
15779474 TTCTAGAAAT
* * * *
15779484 AAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTTCCAAAAACACCGCTATAGGTCAGGAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGACACTTTTCCCAAAAACACCGCTATAGATCAAGAC
* * * * * *
15779549 CTTTAGTGGCGC-TTTTGCACAAACGCCACTAAAGCTCAGGACCTTTAGCGGCGCTTTTCCCAC
66 CTTTAGCGGCGCTTTTTCCACAAACACCACTAAAGATCAAGACCTTTAGCGGCCCTTTTCCCAC
* * * *
15779612 AAATGCTGCTATAGATCAGGACCTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAAGAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGACACTTTTCCCAAAAACACCGCTATAGATCAAGAC
* * * * **
15779677 CTTTAGCGGCGCTTTTTCCACAAGCACCGCTATAGATCAAGACCTTTAGTGGCCCTTTTTTCAC
66 CTTTAGCGGCGCTTTTTCCACAAACACCACTAAAGATCAAGACCTTTAGCGGCCCTTTTCCCAC
* * * * *
15779741 AAACGCCGCTATAGACCA-AACCTTTAGCGACGCTTCTCGCAAAAA
1 AAACGCCGCTATAGATCAGGACCTTTAGCGACACTTTTCCCAAAAA
15779786 TGCCACTAAA
Statistics
Matches: 145, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
128 90 0.62
129 55 0.38
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (129 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGACACTTTTCCCAAAAACACCGCTATAGATCAAGAC
CTTTAGCGGCGCTTTTTCCACAAACACCACTAAAGATCAAGACCTTTAGCGGCCCTTTTCCCAC
Found at i:15780360 original size:36 final size:36
Alignment explanation
Indices: 15780313--15780392 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 36
15780303 AAGTGAAAGA
*
15780313 AAACAGAAATTTATGCGTGTAAATACAAAATGCTTC
1 AAACACAAATTTATGCGTGTAAATACAAAATGCTTC
15780349 AAACACAAATTTATGCGTGTAAATACAAAATGCTTC
1 AAACACAAATTTATGCGTGTAAATACAAAATGCTTC
*
15780385 AAAGACAA
1 AAACACAA
15780393 CCTAATTGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.25
Consensus pattern (36 bp):
AAACACAAATTTATGCGTGTAAATACAAAATGCTTC
Found at i:15781996 original size:39 final size:39
Alignment explanation
Indices: 15781953--15782030 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
15781943 CATTAAAGTA
15781953 CCTTTAGCATCCTTAATATATATAGAATCCATCTACATT
1 CCTTTAGCATCCTTAATATATATAGAATCCATCTACATT
*
15781992 CCTTTAGCCTCCTTAATATATATAGAATCCATCTACATT
1 CCTTTAGCATCCTTAATATATATAGAATCCATCTACATT
15782031 GTAGTTGTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.38
Consensus pattern (39 bp):
CCTTTAGCATCCTTAATATATATAGAATCCATCTACATT
Found at i:15784054 original size:7 final size:7
Alignment explanation
Indices: 15783993--15784082 Score: 54
Period size: 7 Copynumber: 12.7 Consensus size: 7
15783983 TAAACCTTAA
15783993 CCTAACC
1 CCTAACC
* *
15784000 CCGAATC
1 CCTAACC
*
15784007 TCTAACC
1 CCTAACC
*
15784014 CCTAAATC
1 CCT-AACC
* *
15784022 ACTAACT
1 CCTAACC
*
15784029 CTTAACC
1 CCTAACC
* *
15784036 TCTAACA
1 CCTAACC
*
15784043 TCTAACC
1 CCTAACC
15784050 CCTAACC
1 CCTAACC
*
15784057 CTTAACC
1 CCTAACC
*
15784064 CCTAACT
1 CCTAACC
*
15784071 ACTAACC
1 CCTAACC
15784078 CCTAA
1 CCTAA
15784083 ACCTTATTTA
Statistics
Matches: 58, Mismatches: 24, Indels: 2
0.69 0.29 0.02
Matches are distributed among these distances:
7 53 0.91
8 5 0.09
ACGTcount: A:0.33, C:0.42, G:0.01, T:0.23
Consensus pattern (7 bp):
CCTAACC
Found at i:15784062 original size:28 final size:28
Alignment explanation
Indices: 15784023--15784088 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
15784013 CCCTAAATCA
* *
15784023 CTAACTCTTAACCTCTAAC-ATCTAACCC
1 CTAACCCTTAACCCCTAACTA-CTAACCC
15784051 CTAACCCTTAACCCCTAACTACTAACCC
1 CTAACCCTTAACCCCTAACTACTAACCC
*
15784079 CTAAACCTTA
1 CTAACCCTTA
15784089 TTTAATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 33 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.41, G:0.00, T:0.26
Consensus pattern (28 bp):
CTAACCCTTAACCCCTAACTACTAACCC
Found at i:15784190 original size:61 final size:63
Alignment explanation
Indices: 15784072--15784193 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 63
15784062 CCCCTAACTA
*
15784072 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATTTAAACCCTAAAAC
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAAAC
* ***
15784135 CTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACATGTTAATTAATCTAAACCCTAAA
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAA
15784194 TTAATCCCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 33 0.61
62 1 0.02
63 20 0.37
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (63 bp):
CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAAAC
Found at i:15784268 original size:14 final size:15
Alignment explanation
Indices: 15784251--15784283 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
15784241 CCTTAAACAG
15784251 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
15784265 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
15784280 AATC
1 AATC
15784284 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:15784677 original size:20 final size:19
Alignment explanation
Indices: 15784636--15784679 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
15784626 AATTTTAATT
*
15784636 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
* *
15784655 AATAGTAAATAGACAGATAA
1 AATA-TAAATAAACAAATAA
15784675 AATAT
1 AATAT
15784680 TTTTGTGGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:15784874 original size:114 final size:106
Alignment explanation
Indices: 15784679--15784918 Score: 281
Period size: 114 Copynumber: 2.2 Consensus size: 106
15784669 AGATAAAATA
* * * * ** *
15784679 TTTTTGTGGCGCTTTTT-C-AAAAACGCCGGTAAATC-CCAAGCATTAGCGGCGTTTTTAAAAAC
1 TTTTTGCGGCGCTTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGTTTTCAAAAAC
15784741 GCCGCTAAAGCCCTAAAAGGCCAAAAACGATGCTGTTGGGCTTAGGTT
66 GCCGCTAAAGCCCTAAAAGGCC--AAA--A--C-GTTGGGCTTAGGTT
15784789 TTTTTGCGGCGC-TTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTCCAAAA
1 TTTTTGCGGCGCTTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCG-TTTT-CAAAA
* * *
15784853 ACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTT
64 ACGCCGCTAAAGCCCTAAAAGGCCAAAACGTTGGGCTTAGGTT
15784896 TTTTTGCGGCGCTTTTTCCAAAA
1 TTTTTGCGGCGCTTTTTCCAAAA
15784919 CGCTGCTAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
107 25 0.22
108 11 0.10
109 4 0.04
110 13 0.11
111 14 0.12
112 17 0.15
113 4 0.04
114 26 0.23
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (106 bp):
TTTTTGCGGCGCTTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGTTTTCAAAAAC
GCCGCTAAAGCCCTAAAAGGCCAAAACGTTGGGCTTAGGTT
Found at i:15784919 original size:65 final size:65
Alignment explanation
Indices: 15784836--15784992 Score: 221
Period size: 65 Copynumber: 2.4 Consensus size: 65
15784826 CTGAGCATTA
** *
15784836 GCGGCGC-TTTTCCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTT
1 GCGGCGCTTTTTCCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGAAC-TAGGGTTTTT
15784900 T
65 T
*
15784901 GCGGCGCTTTTTCC-AAAACGCTGCTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTT
1 GCGGCGCTTTTTCCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTT
** *
15784965 GCGGCGC-TTTTGAAAAAACGCTGCTAAA
1 GCGGCGCTTTTTCCAAAAACGCCGCTAAA
15784993 TCCCAAGCAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
63 4 0.05
64 31 0.37
65 43 0.51
66 6 0.07
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (65 bp):
GCGGCGCTTTTTCCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTT
Found at i:15785145 original size:113 final size:112
Alignment explanation
Indices: 15784901--15785265 Score: 392
Period size: 113 Copynumber: 3.3 Consensus size: 112
15784891 AGGTTTTTTT
* * * *
15784901 GCGGCGCTTTTTCCAAAACGCTGCTAAAGCCCTGAAAGGTC--AAA--A---CGTTGAAC-TAGG
1 GCGGCGCTTTTT-AAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGAGCGTA-G
* * * *
15784958 GTTTTTTGCGGCGCTTTT-GAAAAAACGCTGCTAAATCCCA-AGCATTA
64 GTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
* * *
15785005 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGAGCTTCGT
1 GCGGCGCTTTTT-AAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGAGCGTAGG
*
15785070 TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTA
65 TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
* * * * *
15785118 GCGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGG
1 GCGGCGCTTT-TTAAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGAGCGTAGG
* * **
15785183 TTTTTTGCGGCGCTTTTCC-AAAATCGCCTCTAAAGCTTTGAGCATTA
65 TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
* *
15785230 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGA
1 GCGGCGCTTTT--TAAAAATGCCGCTAAAGCCCTGA
15785266 GCATTAGTGG
Statistics
Matches: 219, Mismatches: 29, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
104 38 0.17
106 3 0.01
108 1 0.00
111 26 0.12
112 50 0.23
113 99 0.45
114 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (112 bp):
GCGGCGCTTTTTAAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGAGCGTAGGT
TTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
Found at i:15785246 original size:41 final size:41
Alignment explanation
Indices: 15785189--15785306 Score: 166
Period size: 42 Copynumber: 2.9 Consensus size: 41
15785179 TAGGTTTTTT
* *
15785189 GCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
1 GCGGCGCTTTTCCAAAATCGCCGCTAAAGCTCTGAGCATTA
15785230 GCGGCGCTTTTCCAAAAAAT-GCCGCTAAAGCTCTGAGCATTA
1 GCGGCGCTTTTCC--AAAATCGCCGCTAAAGCTCTGAGCATTA
* * *
15785272 GTGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGA
1 GCGGCGCTTTTCCAAAATCGCCGCTAAAGCTCTGA
15785307 AAGGTCAAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
40 4 0.06
41 28 0.41
42 32 0.46
43 5 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAATCGCCGCTAAAGCTCTGAGCATTA
Found at i:15785271 original size:42 final size:41
Alignment explanation
Indices: 15785189--15785306 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 41
15785179 TAGGTTTTTT
* *
15785189 GCGGCGCTTTTCC-AAAATCGCCTCTAAAGCTTTGAGCATTA
1 GCGGCGCTTTTCCAAAAAT-GCCGCTAAAGCTCTGAGCATTA
15785230 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTA
1 GCGGCGCTTTTCC-AAAAATGCCGCTAAAGCTCTGAGCATTA
* * *
15785272 GTGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGA
1 GCGGCGCTTTTCCAAAAATGCCGCTAAAGCTCTGA
15785307 AAGGTCAAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
41 33 0.47
42 32 0.46
43 5 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAATGCCGCTAAAGCTCTGAGCATTA
Found at i:15785356 original size:66 final size:65
Alignment explanation
Indices: 15785274--15785412 Score: 201
Period size: 66 Copynumber: 2.1 Consensus size: 65
15785264 GAGCATTAGT
* ** *
15785274 GGCGC-TTTTCCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTTTT
1 GGCGCTTTTTCCAAAAACGCCACTAAAGCCCTGAAAGGTCAAAACGTTGAAC-TAGG-GTTTTTT
15785338 GC
64 GC
*
15785340 GGCGCTTTTTCC-AAAACGCTACTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGC
1 GGCGCTTTTTCCAAAAACGCCACTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGC
15785404 GGCGCTTTT
1 GGCGCTTTT
15785413 GAAAAAACGC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
64 17 0.25
65 4 0.06
66 40 0.60
67 6 0.09
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (65 bp):
GGCGCTTTTTCCAAAAACGCCACTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGC
Found at i:15785582 original size:113 final size:113
Alignment explanation
Indices: 15785338--15785765 Score: 499
Period size: 113 Copynumber: 3.9 Consensus size: 113
15785328 GGTTTTTTTT
* **
15785338 GCGGCGCTTTTTCCAAAACG-CTACTAAAGCCCTGAAAGGTC--AAA--A---CGTTGAAC-TAG
1 GCGGCGCTTTTTCAAAAACGCCT-CTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTA-
* * * *
15785394 GGTTTTTTGCGGCGCTTTT-GAAAAAACGCTGCTAAATCCCA-AGCATTA
64 GGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
* * * * *
15785442 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGATATCGTTGAGCTTCGT
1 GCGGCGCTTTTTCAAAAACGCCTCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTAGG
*
15785507 TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTA
66 TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
* * * * *
15785555 GCGGTGCTTTGTT-AAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAG
1 GCGGCGCTTT-TTCAAAAACGCCTCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTAG
* * **
15785619 GTTTTTTGCGGCGCTTTTCC-AAAATCGCCTCTAAAGCTTTGAGCATTA
65 GTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
*
15785667 GCGGCGCTTTTTCAAAAACG-CTGCTAAAGCCCTGAAAGGTCAAAAAACGATGTCGTCGGGCTTA
1 GCGGCGCTTTTTCAAAAACGCCT-CTAAAGCCCTGAAAGGTC-AAAAACGATGTCGTTGGGCTTA
15785731 GGTTTTTTGCGGCGC-TTTCCAAAAAACGCCGCTAA
64 GGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAA
15785766 TACTTGTCTT
Statistics
Matches: 275, Mismatches: 33, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
104 37 0.13
105 1 0.00
106 3 0.01
108 1 0.00
111 29 0.11
112 78 0.28
113 124 0.45
114 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (113 bp):
GCGGCGCTTTTTCAAAAACGCCTCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTAGG
TTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCAGAGCATTA
Found at i:15785607 original size:437 final size:436
Alignment explanation
Indices: 15784794--15785701 Score: 1728
Period size: 437 Copynumber: 2.1 Consensus size: 436
15784784 AGGTTTTTTT
15784794 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCG
1 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCG
*
15784859 CTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTTTGCGGCGCTTTTTCCAAAACGCTG
66 CTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTTTGCGGCGCTTTTTCCAAAACGCTA
15784924 CTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGCGGCGCTTTTGAAAAAACGCTGC
131 CTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGCGGCGCTTTTGAAAAAACGCTGC
*
15784989 TAAATCCCAAGCATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGCCCTGAAAGGTCAAAAACGA
196 TAAATCCCAAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGA
*
15785054 TGTCGTTGAGCTTCGTTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTAG
261 TATCGTTGAGCTTCGTTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTAG
15785119 CGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGGT
326 CGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGGT
15785184 TTTTTGCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
391 TTTTTGCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
*
15785230 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGTGGCGCTTTTCCAAAAACGCCG
1 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCG
15785295 CTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTTTTGCGGCGCTTTTTCCAAAACGCT
66 CTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGG-TTTTTTTGCGGCGCTTTTTCCAAAACGCT
15785360 ACTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGCGGCGCTTTTGAAAAAACGCTG
130 ACTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGCGGCGCTTTTGAAAAAACGCTG
15785425 CTAAATCCCAAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACG
195 CTAAATCCCAAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACG
15785490 ATATCGTTGAGCTTCGTTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTA
260 ATATCGTTGAGCTTCGTTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTA
15785555 GCGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGG
325 GCGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGG
15785620 TTTTTTGCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
390 TTTTTTGCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
* * * *
15785667 GCGGCGCTTTTTC-AAAAACGCTGCTAAAGCCCTGA
1 GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGA
15785702 AAGGTCAAAA
Statistics
Matches: 463, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
436 118 0.25
437 345 0.75
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (436 bp):
GCGGCGCTTTTCCAAAAAATGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCG
CTAAAGCCCTGAAAGGTCAAAACGTTGGTCTTAGGTTTTTTTGCGGCGCTTTTTCCAAAACGCTA
CTAAAGCCCTGAAAGGTCAAAACGTTGAACTAGGGTTTTTTGCGGCGCTTTTGAAAAAACGCTGC
TAAATCCCAAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGA
TATCGTTGAGCTTCGTTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCAGAGCATTAG
CGGTGCTTTGTTAAAAATGCCTCTAAAGCCCTAAAAGGTCGAAAACGATGTCGTTGGGCGTAGGT
TTTTTGCGGCGCTTTTCCAAAATCGCCTCTAAAGCTTTGAGCATTA
Found at i:15785800 original size:39 final size:40
Alignment explanation
Indices: 15785750--15785852 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
15785740 CGGCGCTTTC
* * **
15785750 CAAAAAACGCCGCTAATACTTG-TCTTTAGTGGCATTTTG
1 CAAAAAGCGCCGCTAATGCTTGATCTTTAGCAGCATTTTG
* * *
15785789 CAAAAAGCGCCGCTAATGCTCGATCTTTAGCAGCGTTTTT
1 CAAAAAGCGCCGCTAATGCTTGATCTTTAGCAGCATTTTG
**
15785829 TGAAAAGCGCCGCTAATGCTTGAT
1 CAAAAAGCGCCGCTAATGCTTGAT
15785853 TTTCAGCGGC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
39 19 0.36
40 34 0.64
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (40 bp):
CAAAAAGCGCCGCTAATGCTTGATCTTTAGCAGCATTTTG
Found at i:15785885 original size:41 final size:40
Alignment explanation
Indices: 15785791--15785870 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
15785781 GCATTTTGCA
15785791 AAAAGCGCCGCTAATGCTCGATCTTTAGCAGCGTTTTTTG
1 AAAAGCGCCGCTAATGCTCGATCTTTAGCAGCGTTTTTTG
* *
15785831 AAAAGCGCCGCTAATGCTTGAT-TTTCAGCGGCGTTTTTTG
1 AAAAGCGCCGCTAATGCTCGATCTTT-AGCAGCGTTTTTTG
15785871 TTCAAACGCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTTTAGCAGCGTTTTTTG
Found at i:15798336 original size:21 final size:21
Alignment explanation
Indices: 15798263--15798342 Score: 56
Period size: 21 Copynumber: 3.8 Consensus size: 21
15798253 ATACATGATT
*
15798263 GTGTGACTGAG-GCACACACTC
1 GTGTGACTGAGAG-ACACACCC
* * **
15798284 GTGTGACTAAGGGACACGGCC
1 GTGTGACTGAGAGACACACCC
* *
15798305 GTG-CAGTTGAGAGACACACCC
1 GTGTGA-CTGAGAGACACACCC
*
15798326 GTGTGACTGAGATACAC
1 GTGTGACTGAGAGACAC
15798343 GACCAAGTGA
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
20 1 0.02
21 40 0.93
22 2 0.05
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.17
Consensus pattern (21 bp):
GTGTGACTGAGAGACACACCC
Found at i:15801533 original size:13 final size:13
Alignment explanation
Indices: 15801515--15801568 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
15801505 ATGGCACAAA
15801515 ATATAACCATTTC
1 ATATAACCATTTC
*
15801528 ATATAATCATTTC
1 ATATAACCATTTC
15801541 ATATAACCATTTC
1 ATATAACCATTTC
*
15801554 ATCTGAA-CATTTC
1 ATAT-AACCATTTC
15801567 AT
1 AT
15801569 TTGATCATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
13 35 0.95
14 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (13 bp):
ATATAACCATTTC
Found at i:15801581 original size:26 final size:26
Alignment explanation
Indices: 15801515--15801568 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
15801505 ATGGCACAAA
15801515 ATATAACCATTTCATATAATCATTTC
1 ATATAACCATTTCATATAATCATTTC
*
15801541 ATATAACCATTTCATCTGAA-CATTTC
1 ATATAACCATTTCATAT-AATCATTTC
15801567 AT
1 AT
15801569 TTGATCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (26 bp):
ATATAACCATTTCATATAATCATTTC
Found at i:15801582 original size:13 final size:13
Alignment explanation
Indices: 15801515--15801581 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
15801505 ATGGCACAAA
*
15801515 ATATAACCATTTC
1 ATATAATCATTTC
15801528 ATATAATCATTTC
1 ATATAATCATTTC
*
15801541 ATATAACCATTTC
1 ATATAATCATTTC
*
15801554 ATCTGAA-CATTTC
1 ATAT-AATCATTTC
* *
15801567 ATTTGATCATTTC
1 ATATAATCATTTC
15801580 AT
1 AT
15801582 TCACACATTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
12 1 0.02
13 44 0.94
14 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.43
Consensus pattern (13 bp):
ATATAATCATTTC
Found at i:15804955 original size:21 final size:21
Alignment explanation
Indices: 15804931--15804976 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
15804921 ATAATTAGGC
15804931 TCAAGTGGCAAATCATTAAAG
1 TCAAGTGGCAAATCATTAAAG
*
15804952 TCAAGTGGTAAATCATTAAAG
1 TCAAGTGGCAAATCATTAAAG
15804973 TCAA
1 TCAA
15804977 ATGATTTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.26
Consensus pattern (21 bp):
TCAAGTGGCAAATCATTAAAG
Found at i:15816876 original size:44 final size:44
Alignment explanation
Indices: 15816819--15816932 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
15816809 CGAAGATGGA
*
15816819 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAACCGAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAACCAAT
* * * **
15816864 -AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCAAT
*
15816907 AAATCTTATCTCTCTGAAGTTGCAGT
1 AAATCTTATCTCCCTGAAGTTGCAGT
15816933 AGAGTGGATC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 5 0.08
44 54 0.92
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCAAT
Found at i:15825034 original size:24 final size:24
Alignment explanation
Indices: 15825005--15825057 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
15824995 AGGCATGCAT
15825005 GTACA-TAATGATGTTAGGGAC-TA
1 GTACATTAAT-ATGTTAGGGACGTA
15825028 GATACATTAATATGTTAGGGACGTA
1 G-TACATTAATATGTTAGGGACGTA
15825053 GTACA
1 GTACA
15825058 ATAGTACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.04
24 19 0.70
25 7 0.26
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (24 bp):
GTACATTAATATGTTAGGGACGTA
Found at i:15825049 original size:140 final size:141
Alignment explanation
Indices: 15824749--15825090 Score: 385
Period size: 140 Copynumber: 2.4 Consensus size: 141
15824739 GACATGCATT
* * * * *
15824749 TACATTGTGATATTAGGGATATAGTATAATAATACACATATCATAAG-AGGTAATGCATGTAATT
1 TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGG-AATGCATGTAATT
* * * * * *
15824813 TGAGTTGATAGGGGCTATGTACATAAGCCACTTATCATAATAAGGTATGCATGTACATATTGATG
65 TCAGTTGATAGGGACTATGTACATAAGCCACTAAGCATAATAAGGCATGCATGTACATAATGATG
15824878 TCAGGGACTATG
130 TCAGGGACTATG
* *
15824890 TACATTGTGATGTTGGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
1 TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
* *
15824955 CAGTT-ATTAGGGACTA-GATACATCA-TCA-TAAGGCATAATAAGGCATGCATGTACATAATGA
66 CAGTTGA-TAGGGACTATG-TACATAAGCCACTAA-GCATAATAAGGCATGCATGTACATAATGA
*
15825016 TGTTAGGGACTA-G
128 TGTCAGGGACTATG
* * * *
15825029 ATACATTAAT-ATGTTAGGGACGTAGTACAATAGTACACATATTAT-AGTAAGGCATGCATGTA
1 -TACATT-ATGATGTTAGGGACATAGTATAATAGTACACATATAATAAG-AAGGAATGCATGTA
15825091 CATTGTGATG
Statistics
Matches: 174, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.03
140 91 0.52
141 75 0.43
142 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (141 bp):
TACATTATGATGTTAGGGACATAGTATAATAGTACACATATAATAAGAAGGAATGCATGTAATTT
CAGTTGATAGGGACTATGTACATAAGCCACTAAGCATAATAAGGCATGCATGTACATAATGATGT
CAGGGACTATG
Found at i:15825120 original size:199 final size:198
Alignment explanation
Indices: 15824887--15825269 Score: 481
Period size: 199 Copynumber: 1.9 Consensus size: 198
15824877 GTCAGGGACT
** * *
15824887 ATGTACATTGTGATGTTGGGGACATAGTATAATAGTACACATATAATAAGAA-GGAATGCATGTA
1 ATGTACATTGTGATGTCAGAGACATAGTATAATAGTACACATATAATAA-AAGGGAATGCATATA
* *
15824951 ATTTCAGTTATTAGGGACTA-GATAC-A-TCATCATAAGGCATAATAAGGCATGCATGTACATAA
65 ATTTCAGTTAGTAGGGACTATG-TACGAGTCA-CAT-A-GCATAATAAGGCATGCATGCACATAA
* *
15825013 TGATGTTAGGGACTA-GATACATTAAT-ATGTTAGGGACGTAGTACAATAGTACACATATTATAG
126 TGATGTTAGAGACTATG-TACATT-ATGATGTTAGGGACATAGTACAATAGTACACATATTATAG
15825076 TAAGGCATGC
189 TAAGGCATGC
* *
15825086 ATGTACATTGTGATGTCAGAGACATATTATAATAGTACACATATCATAAAAGGGAATGCATATAA
1 ATGTACATTGTGATGTCAGAGACATAGTATAATAGTACACATATAATAAAAGGGAATGCATATAA
* * **
15825151 TTTGAGTTAGTAGGGACTATGTACGTAGGTCACATATCATAATAAGGCATGCATGCACATTTTGA
66 TTTCAGTTAGTAGGGACTATGTACG-A-GTCACATAGCATAATAAGGCATGCATGCACATAATGA
* * * *
15825216 TGTTAGAGATTATGTACATTGTGATGTTAGGGACATAGTATAATAGTATACATA
129 TGTTAGAGACTATGTACATTATGATGTTAGGGACATAGTACAATAGTACACATA
15825270 CCATAAGAAG
Statistics
Matches: 158, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
198 2 0.01
199 77 0.49
200 70 0.44
201 3 0.02
202 3 0.02
203 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (198 bp):
ATGTACATTGTGATGTCAGAGACATAGTATAATAGTACACATATAATAAAAGGGAATGCATATAA
TTTCAGTTAGTAGGGACTATGTACGAGTCACATAGCATAATAAGGCATGCATGCACATAATGATG
TTAGAGACTATGTACATTATGATGTTAGGGACATAGTACAATAGTACACATATTATAGTAAGGCA
TGC
Found at i:15825258 original size:141 final size:141
Alignment explanation
Indices: 15825086--15825395 Score: 399
Period size: 141 Copynumber: 2.2 Consensus size: 141
15825076 TAAGGCATGC
* * * * *
15825086 ATGTACATTGTGATGTCAGAGACATATTATAATAGTACACATATCATAA-AAGGGAATGCATATA
1 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAA-GGAATGCATACA
* * *
15825150 ATTTGAGTTAGTAGGGACTATGTAC-GTAGGTCACATATCATAATAAGGCATGCATGCACATTTT
65 ATTTGAGTTAGTAGGAACTATGTACAG-AAGTCACATATCATAATAAGGCATGCATGCACATGTT
*
15825214 GATGTTAGAGATT
129 GATGTTAGAGACT
* * *
15825227 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTATACATACCATAAGAAGGAATGCGTGCAA
1 ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAAGGAATGCATACAA
** * * *
15825292 TTTGAGTTAGTTTGAACTATGTACAGAAGTCGCATATCATGATAAGGCATGCATGTACATGTTGA
66 TTTGAGTTAGTAGGAACTATGTACAGAAGTCACATATCATAATAAGGCATGCATGCACATGTTGA
*
15825357 TGTTAGGGACT
131 TGTTAGAGACT
* * *
15825368 ATGTACATTATGATCTTAGGAACATAGT
1 ATGTACATTGTGATGTTAGGGACATAGT
15825396 TGTTAGGCTC
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
141 143 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (141 bp):
ATGTACATTGTGATGTTAGGGACATAGTATAATAGTACACATACCATAAGAAGGAATGCATACAA
TTTGAGTTAGTAGGAACTATGTACAGAAGTCACATATCATAATAAGGCATGCATGCACATGTTGA
TGTTAGAGACT
Found at i:15833629 original size:17 final size:17
Alignment explanation
Indices: 15833582--15833629 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
15833572 CCTATTCTTA
**
15833582 AAAAATAAAAATTGTCC
1 AAAAATAAAAATAATCC
* **
15833599 AAAATTAATTATAATCC
1 AAAAATAAAAATAATCC
15833616 AAAAATAAAAATAA
1 AAAAATAAAAATAA
15833630 AAAGTTCAGT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAAATAAAAATAATCC
Found at i:15838741 original size:25 final size:25
Alignment explanation
Indices: 15838713--15838766 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
15838703 ACTGTCTTTC
* *
15838713 ATAGTATATCCTAAAACTGCTATAG
1 ATAGTATATACTAAAACTACTATAG
* *
15838738 ATAGTATATACTGAGACTACTATAG
1 ATAGTATATACTAAAACTACTATAG
15838763 ATAG
1 ATAG
15838767 ACTATGCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (25 bp):
ATAGTATATACTAAAACTACTATAG
Found at i:15850104 original size:12 final size:12
Alignment explanation
Indices: 15850087--15850112 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15850077 TTGCAAATGA
15850087 TTCATTTCCATT
1 TTCATTTCCATT
15850099 TTCATTTCCATT
1 TTCATTTCCATT
15850111 TT
1 TT
15850113 TAGAAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCATTTCCATT
Found at i:15853376 original size:45 final size:45
Alignment explanation
Indices: 15853325--15853412 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
15853315 TGTGAACTGA
* *
15853325 ACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCAG
15853370 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
15853413 GAGTATCTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCAG
Found at i:15853535 original size:38 final size:37
Alignment explanation
Indices: 15853489--15853561 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
15853479 AGGTGTGGAA
*
15853489 TTGAATTGAATAT-TGACTTAGAAA-TGGAAAAGTGAATT
1 TTGAATTGAAT-TGTGA-TT-GAAAGTGAAAAAGTGAATT
15853527 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
15853562 ATTATGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.42, C:0.01, G:0.23, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAATT
Done.