Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 66 of 230
Found at i:18197980 original size:38 final size:38
Alignment explanation
Indices: 18197933--18198008 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
18197923 ATCATGTTAG
18197933 AATAATATGATTCCATAAATGCACATAACATTTAGACT
1 AATAATATGATTCCATAAATGCACATAACATTTAGACT
18197971 AATAATATGATTCCATAAATGCACATAACATTTAGACT
1 AATAATATGATTCCATAAATGCACATAACATTTAGACT
18198009 CGAGTATGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (38 bp):
AATAATATGATTCCATAAATGCACATAACATTTAGACT
Found at i:18205602 original size:42 final size:42
Alignment explanation
Indices: 18205518--18205782 Score: 280
Period size: 42 Copynumber: 6.5 Consensus size: 42
18205508 GCCGGCACTT
* * * *
18205518 AGCCTGCTAGACATATAGTCTGA-AATGTTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
*
18205559 AGCCTGCTAGATGTAAAGTCTGATATTGTTTCACTGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* * * *
18205601 AGCCTGCTAGACGTAAAGTTTAAAATTATTTCACTGGC----
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
*
18205639 A---T--TAGACGTAAAGTCTGATATTGTTTCACTGGCAATA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* * * ***
18205676 AGCCTACTAGACGTAAAGTCTGAAATTATTTCACCAACATTA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* *
18205718 AGTCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCAATA
1 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
* *
18205760 AGCCTGCGAGGCGTAAAGTCTGA
1 AGCCTGCTAGACGTAAAGTCTGA
18205783 AATCTCAATT
Statistics
Matches: 183, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
33 27 0.15
35 1 0.01
37 1 0.01
38 1 0.01
40 1 0.01
41 20 0.11
42 132 0.72
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTA
Found at i:18205650 original size:33 final size:33
Alignment explanation
Indices: 18205608--18205672 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
18205598 TTAAGCCTGC
*
18205608 TAGACGTAAAGTTTAAAATTATTTCACTGGCAT
1 TAGACGTAAAGTCTAAAATTATTTCACTGGCAT
* * *
18205641 TAGACGTAAAGTCTGATATTGTTTCACTGGCA
1 TAGACGTAAAGTCTAAAATTATTTCACTGGCA
18205673 ATAAGCCTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (33 bp):
TAGACGTAAAGTCTAAAATTATTTCACTGGCAT
Found at i:18205694 original size:75 final size:79
Alignment explanation
Indices: 18205565--18205785 Score: 272
Period size: 75 Copynumber: 2.8 Consensus size: 79
18205555 ATTAAGCCTG
* * *
18205565 CTAGATGTAAAGTCTGATATTGTTTCACTGGCATTAAGCCTGCTAGACGTAAAGTTTAAAATTAT
1 CTAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTGCTAGACGTAAAGTCTAAAATTAT
18205630 TT-C-AC-T-GGCAT
66 TTCCAACATAGGC-T
* *
18205641 -TAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTACTAGACGTAAAGTCTGAAATTAT
1 CTAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTGCTAGACGTAAAGTCTAAAATTAT
*
18205705 TTCACCAACATTAAGTCT
66 TT--CCAACA-T-AGGCT
* * *
18205723 GCTAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTGCGAGGCGTAAAGTCTGAAAT
1 -CTAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTGCTAGACGTAAAGTCTAAAAT
18205786 CTCAATTTCA
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
75 61 0.48
78 1 0.01
79 2 0.02
81 1 0.01
82 1 0.01
83 2 0.02
84 58 0.46
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (79 bp):
CTAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTGCTAGACGTAAAGTCTAAAATTAT
TTCCAACATAGGCT
Found at i:18205750 original size:117 final size:116
Alignment explanation
Indices: 18205525--18205756 Score: 302
Period size: 117 Copynumber: 2.0 Consensus size: 116
18205515 CTTAGCCTGC
* * * * * *
18205525 TAGACATATAGTCTGAAATGTTTCACCGGCATTAAGCCTGCTAGATGTAAAGTCTGATATTGTTT
1 TAGACATAAAGTCTGAAATGTTTCACCGGCAATAAGCCTACTAGACGTAAAGTCTGAAATTATTT
*** *
18205590 CACTGGCATTAAGCCTGCTAGACGTAAAGTTTAAAATTATTTCACTGGCAT
66 CACCAACATTAAGCCTGCTAGACGTAAAGTCTAAAATTATTTCACTGGCAT
* * *
18205641 TAGACGTAAAGTCTGATATTGTTTCACTGGCAATAAGCCTACTAGACGTAAAGTCTGAAATTATT
1 TAGACATAAAGTCTGA-AATGTTTCACCGGCAATAAGCCTACTAGACGTAAAGTCTGAAATTATT
* * * *
18205706 TCACCAACATTAAGTCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCA
65 TCACCAACATTAAGCCTGCTAGACGTAAAGTCTAAAATTATTTCACTGGCA
18205757 ATAAGCCTGC
Statistics
Matches: 98, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
116 14 0.14
117 84 0.86
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (116 bp):
TAGACATAAAGTCTGAAATGTTTCACCGGCAATAAGCCTACTAGACGTAAAGTCTGAAATTATTT
CACCAACATTAAGCCTGCTAGACGTAAAGTCTAAAATTATTTCACTGGCAT
Found at i:18206748 original size:4 final size:4
Alignment explanation
Indices: 18206732--18206771 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
18206722 CACAATAGAT
*
18206732 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
18206772 TGATTTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:18212052 original size:21 final size:21
Alignment explanation
Indices: 18212026--18212080 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
18212016 AACAGCGGTG
*
18212026 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
18212047 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
18212068 GCAGTGAGATTAG
1 GCGGTGAGATTAG
18212081 AAACTGTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:18212086 original size:21 final size:21
Alignment explanation
Indices: 18212029--18212087 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
18212019 AGCGGTGGCG
* *
18212029 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
* *
18212050 GTGAGATTGGGTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
*
18212071 GTGAGATTAGAAACTGT
1 GTGAGATTAGATACTGT
18212088 GGTGGAGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:18217469 original size:24 final size:28
Alignment explanation
Indices: 18217419--18217491 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 28
18217409 TGAAATAAAA
18217419 AATATATAAATAAGTAAATAATAATATT
1 AATATATAAATAAGTAAATAATAATATT
*
18217447 AATATAT-AATAAG-ACA-AAT-ATATTT
1 AATATATAAATAAGTAAATAATAATA-TT
* *
18217472 AAAATTTAAATAAGTAAATA
1 AATATATAAATAAGTAAATA
18217492 GAAATAGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.08
25 10 0.27
26 8 0.22
27 8 0.22
28 8 0.22
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (28 bp):
AATATATAAATAAGTAAATAATAATATT
Found at i:18217525 original size:15 final size:15
Alignment explanation
Indices: 18217505--18217535 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18217495 ATAGAAATAT
18217505 AATAATAATAATAAC
1 AATAATAATAATAAC
*
18217520 AATAATCATAATAAC
1 AATAATAATAATAAC
18217535 A
1 A
18217536 TCAAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAATAATAATAAC
Found at i:18219226 original size:44 final size:44
Alignment explanation
Indices: 18219178--18219313 Score: 107
Period size: 50 Copynumber: 3.0 Consensus size: 44
18219168 CGACCTACTG
18219178 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACCA
1 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACCA
* * * **
18219222 CAACTTCAGGAAG-ATAGGACTTGTTAT-GATAGATTTAATCCGAC-CTACTG
1 CAACTTCA-GAGGTATAGGA--T-TCATCG-T---TTTAATCCG-CTCCACCA
* *
18219272 CAACTTCAGAGGTATAGGATTCATCATTTTAATCCACTCCAC
1 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCAC
18219314 TGTAACTTCA
Statistics
Matches: 70, Mismatches: 10, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
43 1 0.01
44 25 0.36
45 3 0.04
46 2 0.03
47 8 0.11
48 1 0.01
49 3 0.04
50 26 0.37
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACCA
Found at i:18219280 original size:50 final size:49
Alignment explanation
Indices: 18219139--18219280 Score: 129
Period size: 44 Copynumber: 3.0 Consensus size: 49
18219129 AACCTTAGGG
*
18219139 AGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTGCAACTTCA-GA
1 AGATAGGACTTGTTAT-GTAGATTTAATCCGACCTACTGCAACTTCAGGA
* * * **
18219188 GGTATAGGA--T-TCATCGT---TTTAATCCG-CTCCACCACAACTTCAGGA
1 AG-ATAGGACTTGTTAT-GTAGATTTAATCCGAC-CTACTGCAACTTCAGGA
18219233 AGATAGGACTTGTTATGATAGATTTAATCCGACCTACTGCAACTTCAG
1 AGATAGGACTTGTTATG-TAGATTTAATCCGACCTACTGCAACTTCAG
18219281 AGGTATAGGA
Statistics
Matches: 70, Mismatches: 12, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
43 1 0.01
44 26 0.37
45 3 0.04
46 2 0.03
47 9 0.13
48 1 0.01
49 1 0.01
50 26 0.37
51 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (49 bp):
AGATAGGACTTGTTATGTAGATTTAATCCGACCTACTGCAACTTCAGGA
Found at i:18219289 original size:50 final size:49
Alignment explanation
Indices: 18219145--18219290 Score: 146
Period size: 50 Copynumber: 3.0 Consensus size: 49
18219135 AGGGAGATAA
18219145 GACTTGTTATGGTAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAG
1 GACTTGTTAT-GTAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAG
* * ** *
18219195 GA--T-TCATCGT---TTTAATCCG-CTCCACCACAACTTCAGGAAG-ATAG
1 GACTTGTTAT-GTAGATTTAATCCGAC-CTACTGCAACTTCA-GAGGTATAG
18219239 GACTTGTTATGATAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAG
1 GACTTGTTATG-TAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAG
18219289 GA
1 GA
18219291 TTCATCATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
43 1 0.01
44 26 0.35
45 3 0.04
46 2 0.03
47 9 0.12
48 1 0.01
49 3 0.04
50 28 0.38
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (49 bp):
GACTTGTTATGTAGATTTAATCCGACCTACTGCAACTTCAGAGGTATAG
Found at i:18219321 original size:44 final size:44
Alignment explanation
Indices: 18219161--18219323 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 44
18219151 TTATGGTAGA
* *
18219161 TTTAATCCGACCTACTGCAACTTCAGAGGTATAGGATTCATCGT
1 TTTAATCCGACCCACTGCAACTTCAGAGGTATAGGATTCATCAT
** * * *
18219205 TTTAATCCG-CTCCACCACAACTTCAGGAAG-ATAGGACTTGTTATGAT
1 TTTAATCCGAC-CCACTGCAACTTCA-GAGGTATAGGA--T-TCATCAT
*
18219252 AGATTTAATCCGACCTACTGCAACTTCAGAGGTATAGGATTCATCAT
1 ---TTTAATCCGACCCACTGCAACTTCAGAGGTATAGGATTCATCAT
*
18219299 TTTAATCC-ACTCCACTGTAACTTCA
1 TTTAATCCGAC-CCACTGCAACTTCA
18219324 AGGAGATTGG
Statistics
Matches: 93, Mismatches: 15, Indels: 22
0.72 0.12 0.17
Matches are distributed among these distances:
43 3 0.03
44 46 0.49
45 3 0.03
46 1 0.01
47 9 0.10
48 1 0.01
49 3 0.03
50 26 0.28
51 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (44 bp):
TTTAATCCGACCCACTGCAACTTCAGAGGTATAGGATTCATCAT
Found at i:18219321 original size:94 final size:94
Alignment explanation
Indices: 18219120--18219323 Score: 320
Period size: 94 Copynumber: 2.2 Consensus size: 94
18219110 CTACAGTCTG
* *
18219120 CTCCACTATAACCTT-AGGGAGATAAGACTTGTTATGGTAGATTTAATCCGACCTACTGCAACTT
1 CTCCACTATAA-CTTCAGGAAGATAAGACTTGTTATGATAGATTTAATCCGACCTACTGCAACTT
* *
18219184 CAGAGGTATAGGATTCATCGTTTTAATCCG
65 CAGAGGTATAGGATTCATCATTTTAATCCA
* * *
18219214 CTCCACCACAACTTCAGGAAGATAGGACTTGTTATGATAGATTTAATCCGACCTACTGCAACTTC
1 CTCCACTATAACTTCAGGAAGATAAGACTTGTTATGATAGATTTAATCCGACCTACTGCAACTTC
18219279 AGAGGTATAGGATTCATCATTTTAATCCA
66 AGAGGTATAGGATTCATCATTTTAATCCA
*
18219308 CTCCACTGTAACTTCA
1 CTCCACTATAACTTCA
18219324 AGGAGATTGG
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 3 0.03
94 96 0.97
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (94 bp):
CTCCACTATAACTTCAGGAAGATAAGACTTGTTATGATAGATTTAATCCGACCTACTGCAACTTC
AGAGGTATAGGATTCATCATTTTAATCCA
Found at i:18219400 original size:44 final size:45
Alignment explanation
Indices: 18219352--18219523 Score: 258
Period size: 44 Copynumber: 3.9 Consensus size: 45
18219342 CATCAATCTA
* *
18219352 CTCCACTGCAAGTTCAGGGAGATAAGATTGG-TATCTTCAACCGG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTATCTTCAACCTG
* * **
18219396 CTCCACTGCAACTTCAGGGAGATAAGGTTGGTTATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTATCTTCAACCTG
18219441 CTCCACTGCAACTTCAGGGAGATAAGATTGG-TATCTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTATCTTCAACCTG
* *
18219485 CTCCACTACAACTTCAGGGAGATAAGGTTGGTTATCTTC
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTTATCTTC
18219524 GAGGAAACAT
Statistics
Matches: 114, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
44 68 0.60
45 46 0.40
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGGTTATCTTCAACCTG
Found at i:18219462 original size:89 final size:89
Alignment explanation
Indices: 18219352--18219522 Score: 315
Period size: 89 Copynumber: 1.9 Consensus size: 89
18219342 CATCAATCTA
* *
18219352 CTCCACTGCAAGTTCAGGGAGATAAGATTGGTATCTTCAACCGGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCGGCTCCACTACAACTTCAGGGAG
18219417 ATAAGGTTGGTTATCTTTAGTCTG
66 ATAAGGTTGGTTATCTTTAGTCTG
*
18219441 CTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCACTACAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCGGCTCCACTACAACTTCAGGGAG
18219506 ATAAGGTTGGTTATCTT
66 ATAAGGTTGGTTATCTT
18219523 CGAGGAAACA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (89 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCGGCTCCACTACAACTTCAGGGAG
ATAAGGTTGGTTATCTTTAGTCTG
Found at i:18219771 original size:44 final size:44
Alignment explanation
Indices: 18219640--18219791 Score: 157
Period size: 44 Copynumber: 3.5 Consensus size: 44
18219630 GATCTATTCT
* * * *
18219640 ACTACAACTTCAGAGAGATAAGATCTATCATTTTAATCCACTCT
1 ACTACAACTTCAGGGAGATAAGATCCATCATTTTAATCCGCTCC
* *** *
18219684 ACTACAACTTCAGGGAGATAGGATTGGT--TTCTTCAATCTGCTCC
1 ACTACAACTTCAGGGAGATAAGATCCATCATT-TT-AATCCGCTCC
18219728 ACTACAACTTCAGGGAGATAAGATCCATCATTTTAATCCGCTCC
1 ACTACAACTTCAGGGAGATAAGATCCATCATTTTAATCCGCTCC
* *
18219772 ACTGA-AACTTAAAGGAGATA
1 ACT-ACAACTTCAGGGAGATA
18219792 GGACTGGTGT
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 79 0.90
45 3 0.03
46 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (44 bp):
ACTACAACTTCAGGGAGATAAGATCCATCATTTTAATCCGCTCC
Found at i:18219839 original size:88 final size:88
Alignment explanation
Indices: 18219631--18219839 Score: 199
Period size: 88 Copynumber: 2.4 Consensus size: 88
18219621 GTCTGATGCG
* * * * * * *
18219631 ATCTATTCTACTACAACTTCA-GAGAGATAAGATCTATCATTTTAATCCACTCTACTACAACTTC
1 ATCTACTCCACTACAACTACAGGA-AGACAAGATCCATCATTTTAATCCACTCCACTACAACTTA
* *
18219695 AGGGAGATAGGATTGGTTTCTTCA
65 AAGGAGATAGGACTGGTTTCTTCA
* * * * *
18219719 ATCTGCTCCACTACAACTTCAGGGAGATAAGATCCATCATTTTAATCCGCTCCACTGA-AACTTA
1 ATCTACTCCACTACAACTACAGGAAGACAAGATCCATCATTTTAATCCACTCCACT-ACAACTTA
*
18219783 AAGGAGATAGGACTGGTGTT-TTCG
65 AAGGAGATAGGACTGGT-TTCTTCA
* * * *
18219807 ATCTACTTCACTGCTAGTACAGGAAGACAAGAT
1 ATCTACTCCACTACAACTACAGGAAGACAAGAT
18219840 ATAAAATCTT
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
88 95 0.96
89 4 0.04
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTACTCCACTACAACTACAGGAAGACAAGATCCATCATTTTAATCCACTCCACTACAACTTAA
AGGAGATAGGACTGGTTTCTTCA
Found at i:18219916 original size:88 final size:88
Alignment explanation
Indices: 18219795--18219976 Score: 283
Period size: 88 Copynumber: 2.1 Consensus size: 88
18219785 GGAGATAGGA
* *
18219795 CTGGTGTTTTCGATCTACTTCACTGCTAGTACAGGAAGACAAGATATAAAATCTTCAACCTACTC
1 CTGGTGTTTTCGATCTACTTCACTACCAGTACAGGAAGACAAGATATAAAATCTTCAACCTACTC
18219860 AACTACTGCTCAGGGAAATAAGG
66 AACTACTGCTCAGGGAAATAAGG
* * * *
18219883 CTGGTGTTTTCGATCTGCTTTACTACCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTC
1 CTGGTGTTTTCGATCTACTTCACTACCAGTACAGGAAGACAAGATATAAAATCTTCAACCTACTC
* *
18219948 CACTACTGCTCAGGGAGATAAGG
66 AACTACTGCTCAGGGAAATAAGG
*
18219971 TTGGTG
1 CTGGTG
18219977 GCTTAAATCT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (88 bp):
CTGGTGTTTTCGATCTACTTCACTACCAGTACAGGAAGACAAGATATAAAATCTTCAACCTACTC
AACTACTGCTCAGGGAAATAAGG
Found at i:18220008 original size:88 final size:86
Alignment explanation
Indices: 18219824--18220053 Score: 239
Period size: 88 Copynumber: 2.6 Consensus size: 86
18219814 TCACTGCTAG
* * *
18219824 TACAGGAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGGCTGGTG
1 TACAGGAAGACAAGAT-TACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGTG
** **
18219889 TTTTCGATCTGCTTTACTACCA
65 GCTTAAATCTGCTTTACTACCA
*
18219911 GTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGT
1 -TACAGGAAGACAAGAT-TACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGT
18219976 GGCTTAAATCTGCTTCCCTACTACC-
64 GGCTTAAATCTGCTT---TACTACCA
** * * * * * *
18220001 T-TGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
1 TACAGGAAGACAAGATT-ACAATCTTCAACCTACTCCACTACTGCTCAGGGAGA
18220054 CAAGATTTAC
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
87 1 0.01
88 112 0.93
89 1 0.01
91 7 0.06
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (86 bp):
TACAGGAAGACAAGATTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGCTGGTGG
CTTAAATCTGCTTTACTACCA
Found at i:18220067 original size:132 final size:131
Alignment explanation
Indices: 18219919--18220504 Score: 454
Period size: 132 Copynumber: 4.4 Consensus size: 131
18219909 CAGTACAGGA
18219919 AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGTGGCTTAAA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGTGGCTTAAA
* *
18219984 TCTGCTTCC-CTACTACCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
66 TCTAC-TCCACTACTACCTTGGG-AGATAAGATTCACCATCTTCGATCTGCTCCACTACAGCTTA
18220048 GGG
129 GGG
* ** * ** *
18220051 AGACAAGATTTACAATCTTCAACCTACTCCACTGTTGCTTAGGGAGAT-AGGATTGGTTTCTTCA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGG-TTGGTGGCTTAA
* * * * * ** * *
18220115 ATCTGCTCCACTACAACTTTAGGGAGATAAGATCCATCAT-TTTAAT-TCGCTCCACTAAAACTT
65 ATCTACTCCACTACTACCTT-GGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTACAGCTT
*
18220178 AAAGG
128 -AGGG
* * **** * * * * * * ** * *****
18220183 AGATAGGA-CTGGTGTTTTCAATCTACTTCACTGCCAG-TATAGAAAGATAAGATCTACAATCTT
1 AGACAAGATCTACAATCTTCAACCTACTCCACT-ACTGCT-CAGGGAGATAAGGT-TGGTGGCTT
* * * ** *** * * *
18220246 CAACCTACTCCACTACT-GCTCTGGGAGATAAGGCT-AGTGTTTTTGATCTGCTTCACTACCAG-
63 AAATCTACTCCACTACTACCT-TGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTA-CAGC
* **
18220308 TACAGAA
126 T-TAGGG
*
18220315 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTTGGTGGCTTAAA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGTGGCTTAAA
**
18220380 TCTACTTCC-CTACTACCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTTA
66 TCTAC-TCCACTACTACCTTGGG-AGATAAGATTCACCATCTTCGATCTGCTCCACTACAGCTTA
18220444 GGG
129 GGG
* *
18220447 AGACAGGATCTACAATCTTCAACCTACTCCACTACTGATCAGGGAGATAAGGTTGGTG
1 AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGTG
18220505 TTTTCGATCT
Statistics
Matches: 338, Mismatches: 95, Indels: 42
0.71 0.20 0.09
Matches are distributed among these distances:
130 1 0.00
131 60 0.18
132 214 0.63
133 63 0.19
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
AGACAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGGTTGGTGGCTTAAA
TCTACTCCACTACTACCTTGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACAGCTTAGG
G
Found at i:18220070 original size:44 final size:44
Alignment explanation
Indices: 18219919--18220097 Score: 114
Period size: 44 Copynumber: 4.1 Consensus size: 44
18219909 CAGTACAGGA
*
18219919 AGACAAGA-TCTACAATCTTCAACCTACTCCACTACTGCTCAGGG
1 AGACAAGATTC-ACAATCTTCAACCTACTCCACTACTGCTTAGGG
* * ***** * * * *
18219963 AGATAAGGTT-GGTGGCTTAAATCTGCTTCC-CTACTACCTT-GGG
1 AGACAAGATTCACAATCTTCAACCTAC-TCCACTACT-GCTTAGGG
* * * * *
18220006 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 -AGACAAGATTCACAATCTTCAACCTACTCCACTACTGCTTAGGG
* **
18220051 AGACAAGATTTACAATCTTCAACCTACTCCACTGTTGCTTAGGG
1 AGACAAGATTCACAATCTTCAACCTACTCCACTACTGCTTAGGG
18220095 AGA
1 AGA
18220098 TAGGATTGGT
Statistics
Matches: 99, Mismatches: 29, Indels: 14
0.70 0.20 0.10
Matches are distributed among these distances:
43 16 0.16
44 65 0.66
45 18 0.18
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
AGACAAGATTCACAATCTTCAACCTACTCCACTACTGCTTAGGG
Found at i:18220139 original size:88 final size:88
Alignment explanation
Indices: 18220022--18220455 Score: 253
Period size: 88 Copynumber: 4.9 Consensus size: 88
18220012 AGATTCACCA
* ** * * **
18220022 TCTTCGATCTGCTCCACTACTGC-TTAGGGAGACAAGATTTACAATCTTCAACCTACTCCACTGT
1 TCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTAC
18220086 TGCTTAGGGAGATAGGATTGGTT
66 TGCTTAGGGAGATAGGATTGGTT
* * * * *
18220109 TCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATCCATC-AT-TTTAA-TTCGCTCCACT
1 TCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATCTA-CAATCTTCAACCT-ACTCCACT
*** * *
18220171 AAAACTTAAAGGAGATAGGACTGGTGT
64 ACTGCTT-AGGGAGATAGGATTGGT-T
* * * * * **
18220198 T-TTCAATCTACTTCACTGCCAGTATAGAAAGATAAGATCTACAATCTTCAACCTACTCCACTAC
1 TCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTAC
* *
18220262 TGCTCT-GGGAGATAAGGCTAGTGTT
66 TGCT-TAGGGAGAT-AGGATTG-GTT
* * * ** ** * *
18220287 T-TT-GATCTGCTTCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGC
1 TCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTAC
* *
18220350 TGCTCAGGGAGATAAGG-TTGGTG
66 TGCTTAGGGAGAT-AGGATTGGTT
* * * * * * * * *
18220373 GCTTAAATCTACTTCC-CTACTACCTT-GGGAAGATAAGAT-TCACCATCTTCGATCTGCTCCAC
1 TCTTCAATCTGC-TCCACTACCACTTTAGGG-AGATAAGATCT-ACAATCTTCAACCTACTCCAC
* *
18220435 TATTGCTTAGGGAGACAGGAT
63 TACTGCTTAGGGAGATAGGAT
18220456 CTACAATCTT
Statistics
Matches: 266, Mismatches: 63, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
86 3 0.01
87 44 0.17
88 188 0.71
89 27 0.10
90 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (88 bp):
TCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTAC
TGCTTAGGGAGATAGGATTGGTT
Found at i:18220427 original size:396 final size:396
Alignment explanation
Indices: 18219693--18220721 Score: 1386
Period size: 396 Copynumber: 2.6 Consensus size: 396
18219683 TACTACAACT
18219693 TCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATCCATCA
1 TCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATCCATCA
* * *
18219758 TTTTAATCCGCTCCACTGAAACTTAAAGGAGATAGGACTGGTGTTTTCGATCTACTTCACTGCTA
66 TTTTAATCCGCTCCACTAAAACTTAAAGGAGATAGGACTGGTGTTTTCAATCTACTTCACTGCCA
* *
18219823 GTACAGGAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGGCTGGT
131 GTACAGAAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGGCTAGT
* *
18219888 GTTTTCGATCTGCTTTACTACCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTA
196 GTTTTCGATCTGCTTCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTA
*
18219953 CTGCTCAGGGAGATAAGGTTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTC
261 CTGCTCAGGGAGATAAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTC
*
18220018 ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATTTACAATCTTCAACCTACTCCAC
326 ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCAC
** *
18220083 TGTTGC
391 TACTGA
* *
18220089 TTAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATCCATCA
1 TCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATCCATCA
*
18220154 TTTTAATTCGCTCCACTAAAACTTAAAGGAGATAGGACTGGTGTTTTCAATCTACTTCACTGCCA
66 TTTTAATCCGCTCCACTAAAACTTAAAGGAGATAGGACTGGTGTTTTCAATCTACTTCACTGCCA
* * * * * * *
18220219 GTATAGAAAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCTGGGAGATAAGGCTAGT
131 GTACAGAAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGGCTAGT
* *
18220284 GTTTTTGATCTGCTTCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTG
196 GTTTTCGATCTGCTTCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTA
18220349 CTGCTCAGGGAGATAAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTC
261 CTGCTCAGGGAGATAAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTC
* *
18220414 ACCATCTTCGATCTGCTCCACTATTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCAC
326 ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCAC
18220479 TACTGA
391 TACTGA
* * * * * * * * *
18220485 TCAGGGAGATAAGG-TTGGTGTT-TTCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTAT
1 TCAGGGAGAT-AGGATTGGT-TTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATCCAT
* ** * **** * * * * * *
18220548 AATCTTTAA-CCTATTCCATTGCTGC-TCAGGGAGAGAAGG-CTAGTGCTTTCTATCTACTTCAC
64 CAT-TTTAATCC-GCTCCACTAAAACTTAAAGGAGA-TAGGACTGGTGTTTTCAATCTACTTCAC
* * * * * * * * *
18220610 TGTCAGTACAGGAAGACAAGATCTACAATCTTCAACTTACTCCACTGCTGATCAGGGAGATAAGG
126 TGCCAGTACAGAAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGG
* * * * * *
18220675 CTGGTGCTTTCGATCTACTTCGCTGCCAATACA-AGAAGACAAGATCT
191 CTAGTGTTTTCGATCTGCTTCACTACCAGTACAGA-AAGACAAGATCT
18220722 GCTACTGTCA
Statistics
Matches: 560, Mismatches: 67, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
395 1 0.00
396 540 0.96
397 19 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (396 bp):
TCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATCCATCA
TTTTAATCCGCTCCACTAAAACTTAAAGGAGATAGGACTGGTGTTTTCAATCTACTTCACTGCCA
GTACAGAAAGACAAGATATAAAATCTTCAACCTACTCAACTACTGCTCAGGGAAATAAGGCTAGT
GTTTTCGATCTGCTTCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTA
CTGCTCAGGGAGATAAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTC
ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCAC
TACTGA
Found at i:18220447 original size:308 final size:308
Alignment explanation
Indices: 18220109--18220680 Score: 726
Period size: 308 Copynumber: 1.9 Consensus size: 308
18220099 AGGATTGGTT
* * * *
18220109 TCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATCCATC-AT-TTTAA-TTCGCTCCACT
1 TCTTCAATCTGCTCCACTACAACTTTAGGGAGACAAGATCCA-CAATCTTCAACCT-ACTCCACT
* *
18220171 AAAACT-TAAAGGAGAT-AGGACTGGTGTTTTCAATCTACTTCACTGCCAGTATAGAAAGATAAG
64 ---ACTATAAAGGAGATAAGG-CTGGTGTTTTCAATCTACTTCACTGCCAGTACAGAAAGACAAG
* * * *
18220234 ATCTACAATCTTCAACCTACTCCACTACTGCTCTGGGAGATAAGGCTAGTG-TTTTTGATCTGCT
125 ATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGAGAAGGCTAGTGCTTTCT-ATCTACT
*
18220298 TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT
189 TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGATCAGGGAGAT
*
18220363 AAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCA
254 AAGGCTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCA
* *** * *
18220418 TCTTCGATCTGCTCCACTATTGC-TTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTAC
1 TCTTCAATCTGCTCCACTACAACTTTAGGGAGACAAGATCCACAATCTTCAACCTACTCCACTAC
* * * * * *
18220482 TGATCAGGGAGATAAGGTTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTA
66 T-ATAAAGGAGATAAGGCTGGTGTTTTCAATCTACTTCACTGCCAGTACAGAAAGACAAGATCTA
* * * * * *
18220547 TAATCTTTAACCTATTCCATTGCTGCTCAGGGAGAGAAGGCTAGTGCTTTCTATCTACTTCACTG
130 CAATCTTCAACCTACTCCACTACTGCTCAGGGAGAGAAGGCTAGTGCTTTCTATCTACTTCACTA
* * *
18220612 TCAGTACAGGAAGACAAGATCTACAATCTTCAACTTACTCCACTGCTGATCAGGGAGATAAGGCT
195 CCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGATCAGGGAGATAAGGCT
18220677 GGTG
260 GGTG
18220681 CTTTCGATCT
Statistics
Matches: 223, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
306 3 0.01
307 1 0.00
308 181 0.81
309 37 0.17
310 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (308 bp):
TCTTCAATCTGCTCCACTACAACTTTAGGGAGACAAGATCCACAATCTTCAACCTACTCCACTAC
TATAAAGGAGATAAGGCTGGTGTTTTCAATCTACTTCACTGCCAGTACAGAAAGACAAGATCTAC
AATCTTCAACCTACTCCACTACTGCTCAGGGAGAGAAGGCTAGTGCTTTCTATCTACTTCACTAC
CAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGATCAGGGAGATAAGGCTG
GTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCA
Found at i:18220539 original size:88 final size:89
Alignment explanation
Indices: 18220447--18220994 Score: 509
Period size: 88 Copynumber: 6.2 Consensus size: 89
18220437 TTGCTTAGGG
* * *
18220447 AGACAGGATCTACAATCTTCAACCTACTCCACTACTGA-TCAGGGAGATAAGGTTGGTGTTTTCG
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
* * *
18220511 ATCTGCTTCACTGCCAGTACAGGA
66 ATCTACTTCGCTGCCAATACAGGA
* * * * * * * *
18220535 AGACAAGATCTATAATCTTTAACCTATTCCATTGCTG-CTCAGGGAGAGAAGGCTAGTGCTTTCT
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
* * *
18220599 ATCTACTTCACTGTCAGTACAGGA
66 ATCTACTTCGCTGCCAATACAGGA
* *
18220623 AGACAAGATCTACAATCTTCAACTTACTCCACTGCTGA-TCAGGGAGATAAGGCTGGTGCTTTCG
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
*
18220687 ATCTACTTCGCTGCCAATACAAGA
66 ATCTACTTCGCTGCCAATACAGGA
* * ** * ** ** ** * * *
18220711 AGACAAGATCTGCTA-CTGTCAGTCTGCTCTGCTGCAAACTCAGGGAGGCAATGCTAGTATCTTT
1 AGACAAGATCTACAATCT-TCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGT-TTT
*
18220775 -GATCTATTTCGCTGCCAATACAGGA
64 CGATCTACTTCGCTGCCAATACAGGA
* ** * ** ** * ** ** **
18220800 AGACAAGATCTGCTGTTTTCAGTCTGTTCCACTACAAACTCAGGGAGGCAAAACTGGTG-TTTCG
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
*
18220864 ATCTACTTTGCTGCCAATACAGGA
66 ATCTACTTCGCTGCCAATACAGGA
* * *
18220888 AGACAAGATCTGCAATCTTCAACCTATTCCACTGCT-ACTCAGGGAGATAAGGCTGGTGTTTTTG
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
* * *
18220952 ATTTACTTCG-TGCCAGTACAAGA
66 ATCTACTTCGCTGCCAATACAGGA
18220975 AGACAAGATCTACAATCTTC
1 AGACAAGATCTACAATCTTC
18220995 TTCAATCTAT
Statistics
Matches: 379, Mismatches: 73, Indels: 17
0.81 0.16 0.04
Matches are distributed among these distances:
87 53 0.14
88 237 0.63
89 85 0.22
90 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (89 bp):
AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGACTCAGGGAGATAAGGCTGGTGTTTTCG
ATCTACTTCGCTGCCAATACAGGA
Found at i:18220655 original size:220 final size:219
Alignment explanation
Indices: 18220233--18220655 Score: 541
Period size: 220 Copynumber: 1.9 Consensus size: 219
18220223 AGAAAGATAA
* * *
18220233 GATCTACAATCTTCAACCTACTCCACTACTGCTCTGGGAGATAAGGCTAGTGTTTTTGATCTGCT
1 GATCTACAATCTTCAACCTACTCCACTACTGATCAGGGAGATAAGGCTAGTGTTTTCGATCTGCT
*
18220298 TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT
66 TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAG
* * * * * *
18220363 AAGGTTGGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCATCTTCGATCT
131 AAGGCTAGTGGCTTAAATCTACTTCCCTACTACC-TAGGAAGACAAGATTCACAATCTTCAATCT
*
18220428 GCTCCACTATTGCTTAGGGAGACAG
195 ACTCCACTATTGCTTAGGGAGACAG
* *
18220453 GATCTACAATCTTCAACCTACTCCACTACTGATCAGGGAGATAAGGTTGGTGTTTTCGATCTGCT
1 GATCTACAATCTTCAACCTACTCCACTACTGATCAGGGAGATAAGGCTAGTGTTTTCGATCTGCT
* * * * * *
18220518 TCACTGCCAGTACAGGAAGACAAGATCTATAATCTTTAACCTATTCCATTGCTGCTCAGGGAGAG
66 TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAG
** * *
18220583 AAGGCTAGT-GCTTTCTATCTACTTCACTGTCAGTA-C-AGGAAGACAAGA-TCTACAATCTTCA
131 AAGGCTAGTGGC-TTAAATCTACTTC-C-CT-ACTACCTAGGAAGACAAGATTC-ACAATCTTCA
18220644 A-CTTACTCCACT
191 ATC-TACTCCACT
18220656 GCTGATCAGG
Statistics
Matches: 174, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
219 5 0.03
220 163 0.94
221 1 0.01
222 2 0.01
223 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (219 bp):
GATCTACAATCTTCAACCTACTCCACTACTGATCAGGGAGATAAGGCTAGTGTTTTCGATCTGCT
TCACTACCAGTACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAG
AAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTAGGAAGACAAGATTCACAATCTTCAATCTA
CTCCACTATTGCTTAGGGAGACAG
Found at i:18220786 original size:89 final size:89
Alignment explanation
Indices: 18220681--18220900 Score: 282
Period size: 89 Copynumber: 2.5 Consensus size: 89
18220671 AAGGCTGGTG
* * ** *
18220681 CTTTCGATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGCTACTGTCAGTCTGCTCTGCTGC
1 CTTT-GATCTATTTCGCTGCCAATACAGGAAGACAAGATCTGCTACTGTCAGTCTGCTCCACTAC
**
18220746 AAACTCAGGGAGGCAATGCTAGTAT
65 AAACTCAGGGAGGCAAAACTAGTAT
** * *
18220771 CTTTGATCTATTTCGCTGCCAATACAGGAAGACAAGATCTGCTGTTTTCAGTCTGTTCCACTACA
1 CTTTGATCTATTTCGCTGCCAATACAGGAAGACAAGATCTGCTACTGTCAGTCTGCTCCACTACA
* *
18220836 AACTCAGGGAGGCAAAACTGGTGT
66 AACTCAGGGAGGCAAAACTAGTAT
*
18220860 -TTCGATCTACTTT-GCTGCCAATACAGGAAGACAAGATCTGC
1 CTTTGATCTA-TTTCGCTGCCAATACAGGAAGACAAGATCTGC
18220901 AATCTTCAAC
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
88 36 0.31
89 75 0.65
90 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (89 bp):
CTTTGATCTATTTCGCTGCCAATACAGGAAGACAAGATCTGCTACTGTCAGTCTGCTCCACTACA
AACTCAGGGAGGCAAAACTAGTAT
Found at i:18221338 original size:24 final size:24
Alignment explanation
Indices: 18221304--18221350 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
18221294 TTCCCCCCAC
*
18221304 TGTAATCTTCAAGGTTCAATCCAT
1 TGTAATATTCAAGGTTCAATCCAT
18221328 TGTAATATTCAAGGTTCAATCCA
1 TGTAATATTCAAGGTTCAATCCA
18221351 CTGTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (24 bp):
TGTAATATTCAAGGTTCAATCCAT
Found at i:18232561 original size:42 final size:42
Alignment explanation
Indices: 18232468--18232655 Score: 198
Period size: 42 Copynumber: 4.5 Consensus size: 42
18232458 ACCAGCACTT
* * *
18232468 AGCCTGCTAGACATATAGTCTGA-AATATTTCACCAGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTATTTCACCGGCATTA
* * *
18232509 AGCCTGCTAGACGTAAAGTCTGATATTGTTTAACCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTATTTCACCGGCATTA
* * **
18232551 AGCCTGCTAGACATGAAGTCTGAAATTATTTTGCCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTATTTCACCGGCATTA
* * * * * *
18232593 AGCCTACTAGACGTAAAGTCTGATATTGTTTCACTGGAAATA
1 AGCCTGCTAGACATAAAGTCTGATATTATTTCACCGGCATTA
* * *
18232635 AGCCTTCTAGGCTTAAAGTCT
1 AGCCTGCTAGACATAAAGTCT
18232656 TAAATCTCAA
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
41 21 0.17
42 100 0.83
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (42 bp):
AGCCTGCTAGACATAAAGTCTGATATTATTTCACCGGCATTA
Found at i:18232654 original size:84 final size:84
Alignment explanation
Indices: 18232468--18232660 Score: 253
Period size: 84 Copynumber: 2.3 Consensus size: 84
18232458 ACCAGCACTT
* *
18232468 AGCCTGCTAGACATATAGTCTGAAA-TATTTCACCAGCATTAAGCCTGCTAGACGTAAAGTCTGA
1 AGCCTGCTAGACATAAAGTCTGAAATTATTTCACCAGCATTAAGCCTACTAGACGTAAAGTCTGA
* *
18232532 TATTGTTTAACCGGCATTA
66 TATTGTTTAACCGGAAATA
* ** *
18232551 AGCCTGCTAGACATGAAGTCTGAAATTATTTTGCCGGCATTAAGCCTACTAGACGTAAAGTCTGA
1 AGCCTGCTAGACATAAAGTCTGAAATTATTTCACCAGCATTAAGCCTACTAGACGTAAAGTCTGA
* *
18232616 TATTGTTTCACTGGAAATA
66 TATTGTTTAACCGGAAATA
* * * *
18232635 AGCCTTCTAGGCTTAAAGTCTTAAAT
1 AGCCTGCTAGACATAAAGTCTGAAAT
18232661 CTCAATTTCA
Statistics
Matches: 94, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
83 23 0.24
84 71 0.76
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (84 bp):
AGCCTGCTAGACATAAAGTCTGAAATTATTTCACCAGCATTAAGCCTACTAGACGTAAAGTCTGA
TATTGTTTAACCGGAAATA
Found at i:18233394 original size:34 final size:34
Alignment explanation
Indices: 18233356--18233422 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
18233346 ACATATATAA
18233356 ATATTCGAACAATATATATATC-TATATACCATTC
1 ATATTCGAACAATATATATA-CATATATACCATTC
* *
18233390 ATATTCGAACATTGTATATACATATATACCATT
1 ATATTCGAACAATATATATACATATATACCATT
18233423 TATACTTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.39
Consensus pattern (34 bp):
ATATTCGAACAATATATATACATATATACCATTC
Found at i:18236556 original size:16 final size:17
Alignment explanation
Indices: 18236535--18236567 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18236525 TTTAATAATT
18236535 TATTTTT-ATTTTTTAA
1 TATTTTTAATTTTTTAA
18236551 TATTTTTAATTTTTTAA
1 TATTTTTAATTTTTTAA
18236568 AGAATTATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTTTAATTTTTTAA
Found at i:18242338 original size:47 final size:47
Alignment explanation
Indices: 18242269--18242489 Score: 388
Period size: 47 Copynumber: 4.7 Consensus size: 47
18242259 GTGTGTATAC
18242269 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
* *
18242316 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
*
18242363 GTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATAAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
*
18242412 GTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
18242459 GTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAAT
18242490 AGTGTATATA
Statistics
Matches: 164, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 121 0.74
49 43 0.26
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAAT
Found at i:18242394 original size:96 final size:94
Alignment explanation
Indices: 18242269--18242489 Score: 388
Period size: 96 Copynumber: 2.3 Consensus size: 94
18242259 GTGTGTATAC
*
18242269 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATATATGT
*
18242334 GATAAGGCCTAATAGCCGATGTGATGAAT
66 GATAAGGCCTAATAGCCGATGTGATAAAT
*
18242363 GTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATAAATGTGAAAGTATATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATATAT
*
18242428 GTGATAAGGCCTAATGGCCGATGTGATAAAT
64 GTGATAAGGCCTAATAGCCGATGTGATAAAT
18242459 GTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAAT
18242490 AGTGTATATA
Statistics
Matches: 120, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
94 30 0.25
96 90 0.75
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (94 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTATATATATGT
GATAAGGCCTAATAGCCGATGTGATAAAT
Found at i:18242498 original size:26 final size:27
Alignment explanation
Indices: 18242464--18242517 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
18242454 TAAATGTGAA
18242464 AGTG-TATATATGTGATAAGGCCTAAT
1 AGTGATATATATGTGATAAGGCCTAAT
18242490 AGTGTATATATATGTGATAAGGCCTAAT
1 AGTG-ATATATATGTGATAAGGCCTAAT
18242518 GGCCGATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 4 0.15
28 22 0.85
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (27 bp):
AGTGATATATATGTGATAAGGCCTAAT
Found at i:18242501 original size:75 final size:75
Alignment explanation
Indices: 18242418--18242564 Score: 285
Period size: 75 Copynumber: 2.0 Consensus size: 75
18242408 AAATGTGAAA
18242418 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAG
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAG
18242483 GCCTAATAGT
66 GCCTAATAGT
*
18242493 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAG
18242558 GCCTAAT
66 GCCTAAT
18242565 GGCGATGTGA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (75 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAG
GCCTAATAGT
Found at i:18242553 original size:47 final size:47
Alignment explanation
Indices: 18242496--18243031 Score: 896
Period size: 47 Copynumber: 11.3 Consensus size: 47
18242486 TAATAGTGTA
18242496 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242543 TATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242589 TATATATGTGATAAGGCCTAATGGCCGATGTGAT-AATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
18242635 TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242684 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
18242733 TATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
18242780 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242827 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242876 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18242923 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
18242970 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
18243017 TATAAATGTGATAAG
1 TATATATGTGATAAG
18243032 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 16, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
46 58 0.12
47 270 0.58
48 33 0.07
49 106 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:18242573 original size:143 final size:138
Alignment explanation
Indices: 18242468--18243031 Score: 734
Period size: 143 Copynumber: 4.0 Consensus size: 138
18242458 TGTGAAAGTG
* *
18242468 TATATATGTGATAAGGCCT-AATAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TATATATGTGATAATG--TGAA-AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
18242532 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATA
63 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18242595 TGTGATAAGGCC
128 TGTGATAAGG-C
18242607 TA-ATGGCCGATGTGATAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TATAT-----ATGTGATAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
18242671 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
61 GAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
18242736 ATATGTGATAAGGCC
125 ATATGTGATAAGG-C
*
18242751 TAATAGCCGATGTGATAAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 T-ATA---TATGTGAT-AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
18242814 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
61 GAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
18242879 ATATGTGATAAGGCC
125 ATATGTGATAAGG-C
*
18242894 TA-ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TATAT-----ATGTGAT-AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGA
* * * * * * *
18242956 TGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
60 TGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
18243020 AAATGTGATAAG
125 ATATGTGATAAG
18243032 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 14, Indels: 38
0.88 0.03 0.09
Matches are distributed among these distances:
138 2 0.01
139 2 0.01
141 108 0.28
142 3 0.01
143 214 0.55
144 48 0.12
145 13 0.03
146 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (138 bp):
TATATATGTGATAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
TGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGC
Found at i:18242622 original size:190 final size:185
Alignment explanation
Indices: 18242490--18243031 Score: 806
Period size: 190 Copynumber: 2.9 Consensus size: 185
18242480 AAGGCCTAAT
18242490 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
18242555 AAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
66 AAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
*
18242620 GATAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
131 GATAATGTGAAAGTGTATATATATGTGATAAGG-CT-ATA---TATGTGATGAATGTGAA
18242680 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
18242745 AAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
66 AAGGCCTAAT-GGCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
18242810 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA-ATGGCCGATGTGATGAATGTGAA
130 TGAT-AATGTGAAAGTGTATATATATGTGATAAGG-CTATAT-----ATGTGATGAATGTGAA
18242872 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * *
18242935 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
66 AAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
18243000 TGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
130 TGAT-AATGTGAAAGTGTATATATATGTGATAAG
18243032 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 14, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
188 10 0.03
189 2 0.01
190 209 0.63
191 56 0.17
192 53 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (185 bp):
AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGT
GATAATGTGAAAGTGTATATATATGTGATAAGGCTATATATGTGATGAATGTGAA
Found at i:18243206 original size:37 final size:37
Alignment explanation
Indices: 18243150--18243228 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
18243140 CCGAGCTCTA
* * *
18243150 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
18243187 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
18243224 AAGAC
1 AAGAC
18243229 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:18245747 original size:14 final size:14
Alignment explanation
Indices: 18245730--18245810 Score: 90
Period size: 14 Copynumber: 5.8 Consensus size: 14
18245720 GTAAATGTGA
18245730 ATTCATAGATACAG
1 ATTCATAGATACAG
*
18245744 ATTCATAAATACAG
1 ATTCATAGATACAG
* * *
18245758 ATTCATATATGCGG
1 ATTCATAGATACAG
*
18245772 ATTCATAGATACAT
1 ATTCATAGATACAG
***
18245786 ATTCATAGATGTGG
1 ATTCATAGATACAG
18245800 ATTCATAGATA
1 ATTCATAGATA
18245811 TGTACTCATA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 54 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (14 bp):
ATTCATAGATACAG
Found at i:18245801 original size:28 final size:28
Alignment explanation
Indices: 18245730--18245830 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 28
18245720 GTAAATGTGA
* * * *
18245730 ATTCATAGATACAGATTCATAAATACAG
1 ATTCATAGATGCGGATTCATAGATACAT
*
18245758 ATTCATATATGCGGATTCATAGATACAT
1 ATTCATAGATGCGGATTCATAGATACAT
* **
18245786 ATTCATAGATGTGGATTCATAGATATGT
1 ATTCATAGATGCGGATTCATAGATACAT
* *
18245814 ACTCATAGATGCAGATT
1 ATTCATAGATGCGGATT
18245831 TATATACATG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (28 bp):
ATTCATAGATGCGGATTCATAGATACAT
Found at i:18245819 original size:14 final size:14
Alignment explanation
Indices: 18245772--18245823 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
18245762 ATATATGCGG
**
18245772 ATTCATAGATACAT
1 ATTCATAGATATGT
* *
18245786 ATTCATAGATGTGG
1 ATTCATAGATATGT
18245800 ATTCATAGATATGT
1 ATTCATAGATATGT
*
18245814 ACTCATAGAT
1 ATTCATAGAT
18245824 GCAGATTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (14 bp):
ATTCATAGATATGT
Found at i:18248942 original size:3 final size:3
Alignment explanation
Indices: 18248936--18248965 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
18248926 CTGCTATTAC
*
18248936 TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
18248966 CATTGATGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18254394 original size:31 final size:30
Alignment explanation
Indices: 18254333--18254415 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 30
18254323 ACTTCAAATT
* * *
18254333 TTGAAAAGTAATAATAATTAAAATTTATCGAC
1 TTGAAAAGTAAT-A-AACTAAAATTGATCGAA
18254365 TTGAAAAGTACATAAACTAAAATTGATCGAA
1 TTGAAAAGTA-ATAAACTAAAATTGATCGAA
*
18254396 TT--AAAGTATAAAAACTAAAA
1 TTGAAAAGTA-ATAAACTAAAA
18254416 CAAAGTACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 16 0.36
31 16 0.36
32 11 0.24
33 2 0.04
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (30 bp):
TTGAAAAGTAATAAACTAAAATTGATCGAA
Found at i:18254411 original size:29 final size:30
Alignment explanation
Indices: 18254336--18254415 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
18254326 TCAAATTTTG
* * * *
18254336 AAAAGTAATAATAATTAAAATTTATCGACTT
1 AAAAGT-ATAAAAACTAAAATTGATCGAATT
* *
18254367 GAAAAGTACATAAACTAAAATTGATCGAATT
1 -AAAAGTATAAAAACTAAAATTGATCGAATT
18254398 -AAAGTATAAAAACTAAAA
1 AAAAGTATAAAAACTAAAA
18254416 CAAAGTACCA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 16 0.40
31 18 0.45
32 6 0.15
ACGTcount: A:0.56, C:0.07, G:0.09, T:0.28
Consensus pattern (30 bp):
AAAAGTATAAAAACTAAAATTGATCGAATT
Found at i:18257080 original size:90 final size:90
Alignment explanation
Indices: 18256971--18257174 Score: 288
Period size: 91 Copynumber: 2.3 Consensus size: 90
18256961 TCAAATTTTT
* * * * * *
18256971 TTTTAAAAAAAAGTAATTAAGTCCCTAC-CTTTTTTTTGCAATTATTTGGGTACTTGAACTTTCA
1 TTTTCAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCAATCAATTGAGTACTTGAACTTTCA
*
18257035 AAATGCATCAAAAAGGCCCTCAAGCC
66 AAATGCATCAAAAAGGCCCTCAA-AC
*
18257061 TTTTCAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCA
1 TTTTCAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCAATCAATTGAGTACTTGAACTTTCA
* *
18257126 AAATGCATCAAAAAGTCCCTCAAAT
66 AAATGCATCAAAAAGGCCCTCAAAC
18257151 TTTTCAAAAAAA-CAATTAA-CCCCT
1 TTTTCAAAAAAAGCAATTAAGCCCCT
18257175 GCTTTTGTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
88 5 0.05
89 7 0.07
90 37 0.36
91 54 0.52
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (90 bp):
TTTTCAAAAAAAGCAATTAAGCCCCTACTCTTTTTTTTGCAATCAATTGAGTACTTGAACTTTCA
AAATGCATCAAAAAGGCCCTCAAAC
Found at i:18257312 original size:29 final size:30
Alignment explanation
Indices: 18257261--18257319 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
18257251 ATAAAAATTC
* * *
18257261 AAATATTAAAAATTTATTAAAATTAGAAAA
1 AAATAGTAAAAATATATAAAAATTAGAAAA
*
18257291 AAATAGTAAAAA-ATATAAAAATTGGAAAA
1 AAATAGTAAAAATATATAAAAATTAGAAAA
18257320 TTTTATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (30 bp):
AAATAGTAAAAATATATAAAAATTAGAAAA
Found at i:18257419 original size:20 final size:20
Alignment explanation
Indices: 18257380--18257444 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 20
18257370 TTATAAAATT
* *
18257380 TTATAAAGT-TGTAAGAAAA
1 TTATAAATTATGTAAAAAAA
*
18257399 TTATACAA-TATGTAAAGAAA
1 TTATA-AATTATGTAAAAAAA
*
18257419 -TATAAATTTTGTAAAAAAA
1 TTATAAATTATGTAAAAAAA
18257438 TTATAAA
1 TTATAAA
18257445 AATTATCGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.05
19 20 0.53
20 16 0.42
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (20 bp):
TTATAAATTATGTAAAAAAA
Found at i:18257434 original size:57 final size:56
Alignment explanation
Indices: 18257291--18257434 Score: 150
Period size: 57 Copynumber: 2.5 Consensus size: 56
18257281 AATTAGAAAA
* *
18257291 AAATAGTAAA-AAATATAAAAATTGGAAAATTTTATAAAAATCGTAAAAAAATTAT
1 AAATAGTAAAGAAATATAAAATTTGTAAAATTTTATAAAAATCGTAAAAAAATTAT
* * * * *
18257346 AAACTA-TATAGAAATATAAAAAATTTATAAAATTTTAT-AAAGTTGTAAGAAAATTAT
1 AAA-TAGTAAAGAAATAT--AAAATTTGTAAAATTTTATAAAAATCGTAAAAAAATTAT
*
18257403 ACAATATGTAAAGAAATATAAATTTTGTAAAA
1 A-AATA-GTAAAGAAATATAAAATTTGTAAAA
18257435 AAATTATAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
55 6 0.08
56 8 0.11
57 30 0.42
58 18 0.25
59 10 0.14
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (56 bp):
AAATAGTAAAGAAATATAAAATTTGTAAAATTTTATAAAAATCGTAAAAAAATTAT
Found at i:18257705 original size:48 final size:46
Alignment explanation
Indices: 18257591--18257707 Score: 121
Period size: 48 Copynumber: 2.4 Consensus size: 46
18257581 GTTAATTTTT
*
18257591 TTATAAATTTTATAAAA-TTTTACATTTTTTAAAGATTTTTATAAAAAA
1 TTAT-AATTTT-TAAAATTTTTAAATTTTTTAAAGA-TTTTATAAAAAA
* * *
18257639 TTCTAATTTTTAATAATTTTTAAATTTTTTAAAG-TTTTATTAAAAT
1 TTATAATTTTTAA-AATTTTTAAATTTTTTAAAGATTTTATAAAAAA
18257685 TTAATAATTTTTCTAAAATTTTT
1 TT-ATAA-TTTT-TAAAATTTTT
18257708 TATGTTTTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
46 15 0.25
47 11 0.19
48 30 0.51
49 3 0.05
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.56
Consensus pattern (46 bp):
TTATAATTTTTAAAATTTTTAAATTTTTTAAAGATTTTATAAAAAA
Found at i:18257849 original size:85 final size:89
Alignment explanation
Indices: 18257749--18257941 Score: 241
Period size: 88 Copynumber: 2.2 Consensus size: 89
18257739 TAAGGGCAAG
* * * * *
18257749 GGCTTAATTGCTTTTTTTGAA-AAATTTTAGGGTCTTTTTGAT-GCTTTTGAAAGTTCAAGTACC
1 GGCTTAATTGTTTTTTTTGAAGAAATTTGAGGGCCTTTTTAATCACTTTTGAAAGTTCAAGTACC
18257812 CAATTGAGTG-AAAA-AAAACAGA
66 CAATTGAGTGCAAAAGAAAACAGA
* *
18257834 GGCTTAATTGTTTTTTTTGAAGAAGTTTGAGGGCCTTTTTAATCCACTTTTGAAAGTTCAAGTGC
1 GGCTTAATTGTTTTTTTTGAAGAAATTTGAGGGCCTTTTTAAT-CACTTTTGAAAGTTCAAGTAC
* ** *
18257899 TCAATTGAGTGCAAAAGAAAGGAGG
65 CCAATTGAGTGCAAAAGAAAACAGA
*
18257924 GGCTTAATTTTTTTTTTT
1 GGCTTAATTGTTTTTTTT
18257942 TTCTTGAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 20 0.22
86 17 0.19
88 28 0.31
89 4 0.04
90 22 0.24
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (89 bp):
GGCTTAATTGTTTTTTTTGAAGAAATTTGAGGGCCTTTTTAATCACTTTTGAAAGTTCAAGTACC
CAATTGAGTGCAAAAGAAAACAGA
Found at i:18266004 original size:37 final size:37
Alignment explanation
Indices: 18265932--18266023 Score: 103
Period size: 37 Copynumber: 2.5 Consensus size: 37
18265922 AGTGCCATGG
* * *
18265932 CATGTTATCGGATGGATTAGCTCTTACGAGCATTTGA
1 CATGTTTTCGGTTGGATTAGCTCTTACAAGCATTTGA
* * *
18265969 CATGTTTTCGGTTGGATTAGCTCTTATAAGGATTTGG
1 CATGTTTTCGGTTGGATTAGCTCTTACAAGCATTTGA
* **
18266006 CGTGTTTTTAGTTGGATT
1 CATGTTTTCGGTTGGATT
18266024 GCTTGTGTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.20, C:0.12, G:0.26, T:0.42
Consensus pattern (37 bp):
CATGTTTTCGGTTGGATTAGCTCTTACAAGCATTTGA
Found at i:18268875 original size:7 final size:7
Alignment explanation
Indices: 18268865--18268892 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
18268855 AAGAACTATA
18268865 AAAAATT
1 AAAAATT
18268872 AAAAATT
1 AAAAATT
18268879 AAAAATT
1 AAAAATT
18268886 AAAAATT
1 AAAAATT
18268893 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:18269357 original size:28 final size:26
Alignment explanation
Indices: 18269298--18269357 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
18269288 AAAGTACGTA
*
18269298 AATTTTTAAAAAAATTAAAAAATTCT
1 AATTTTTAAAAAAATTAAAAAATTAT
* * *
18269324 TATTTTAAACAAAAATTTAAAAATTAT
1 AATTTTTAA-AAAAATTAAAAAATTAT
18269351 AATTTTT
1 AATTTTT
18269358 TCAATAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (26 bp):
AATTTTTAAAAAAATTAAAAAATTAT
Found at i:18271558 original size:29 final size:29
Alignment explanation
Indices: 18271516--18271573 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
18271506 GATATTTAAC
*
18271516 CACTCAAACCTCGTTTTTAAGCTTAGAGT
1 CACTCAAACCTCGTTTCTAAGCTTAGAGT
18271545 CACTCAAACCTCGTTTCTAAGCTTAGAGT
1 CACTCAAACCTCGTTTCTAAGCTTAGAGT
18271574 TCAATTTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (29 bp):
CACTCAAACCTCGTTTCTAAGCTTAGAGT
Found at i:18272347 original size:21 final size:21
Alignment explanation
Indices: 18272323--18272362 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18272313 TCTTAACCCA
18272323 AAAT-TTTAATTCTAATTATTT
1 AAATATTTAATT-TAATTATTT
*
18272344 AAATATTTTATTTAATTAT
1 AAATATTTAATTTAATTAT
18272363 CTAACCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
AAATATTTAATTTAATTATTT
Found at i:18275910 original size:37 final size:37
Alignment explanation
Indices: 18275864--18275938 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
18275854 ATTACCCGAA
*
18275864 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
18275901 TTGAATCACTACATAATTAAAAACATTACGTAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
18275938 T
1 T
18275939 GAAATTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:18275952 original size:37 final size:37
Alignment explanation
Indices: 18275864--18275955 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
18275854 ATTACCCGAA
* *
18275864 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
* * *
18275901 TTGAATCACTACATAATTAAAAACATTACGTAATTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
18275937 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
18275956 GAAATGTAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
36 3 0.06
37 43 0.88
38 3 0.06
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:18276242 original size:41 final size:41
Alignment explanation
Indices: 18276185--18276266 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
18276175 TTACGGACGC
18276185 AATCCTCATTTTCTCTGCTTCAACGCCGATTTCTAATCCCT
1 AATCCTCATTTTCTCTGCTTCAACGCCGATTTCTAATCCCT
*
18276226 AATCCTCATTTTCTCTGCTTCAACGCCTATTTCTAATCCCT
1 AATCCTCATTTTCTCTGCTTCAACGCCGATTTCTAATCCCT
18276267 TCCAAAAGCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.20, C:0.34, G:0.06, T:0.40
Consensus pattern (41 bp):
AATCCTCATTTTCTCTGCTTCAACGCCGATTTCTAATCCCT
Found at i:18279047 original size:133 final size:134
Alignment explanation
Indices: 18278876--18279252 Score: 487
Period size: 133 Copynumber: 2.8 Consensus size: 134
18278866 GCGGCAAACA
* ** * *
18278876 ATTGGAATATAGCGGCGTTTTTTTAGAAACGCCGGTAAAGATAACGAATTTGAGGAAAAAATCTG
1 ATTGGAATATAGCGGCGTTATTGGAGAAACGCCGGTAAAGATAACTAATTTGAGGAAAAAATTTG
18278941 AGCAAAACAGTACCGTTTTGTTGTTTCATTTTATTTCTTTAGTGGCGCATTGTAAAAAACACCGG
66 AGCAAAACAGTACCGTTTTGTTGTTTCATTTTATTTCTTTAGTGGCGCATTGTAAAAAACACC-G
18279006 AAAAG
130 AAAAG
18279011 ATT-GAAT-TAGCGGCGTT-TTCAGG-GAAACGCCGGTAAAGATAACTAATTTGAGGAAAAAATT
1 ATTGGAATATAGCGGCGTTATT--GGAGAAACGCCGGTAAAGATAACTAATTTGAGGAAAAAATT
* * * * * *
18279072 TG-GACAAAACACTACCGTTTTATTGCTTCATTTTATTTCTTTAGTGGCTCATTGTAAAAGACGC
64 TGAG-CAAAACAGTACCGTTTTGTTGTTTCATTTTATTTCTTTAGTGGCGCATTGTAAAAAACAC
* *
18279136 CGCAAAT
128 CGAAAAG
* * * * *
18279143 ATTGGGATATAGTGGTGTTATTGGAGAAACGCCGGTAAAGATATCTAATTTGAGGAAAAATTTTG
1 ATTGGAATATAGCGGCGTTATTGGAGAAACGCCGGTAAAGATAACTAATTTGAGGAAAAAATTTG
* *
18279208 AGCAAAACAGTACCGTTTTGTTGTTTCCTTTT-TATGCTTTAGTGG
66 AGCAAAACAGTACCGTTTTGTTGTTTCATTTTAT-TTCTTTAGTGG
18279253 TGAAATGTTA
Statistics
Matches: 211, Mismatches: 22, Indels: 19
0.84 0.09 0.08
Matches are distributed among these distances:
132 10 0.05
133 109 0.52
134 86 0.41
135 6 0.03
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (134 bp):
ATTGGAATATAGCGGCGTTATTGGAGAAACGCCGGTAAAGATAACTAATTTGAGGAAAAAATTTG
AGCAAAACAGTACCGTTTTGTTGTTTCATTTTATTTCTTTAGTGGCGCATTGTAAAAAACACCGA
AAAG
Found at i:18279658 original size:21 final size:20
Alignment explanation
Indices: 18279624--18279675 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
18279614 TTGTGTTCTA
18279624 GGCTTAGAGTTGAGGTTTAG
1 GGCTTAGAGTTGAGGTTTAG
* *
18279644 GGCTTGGAGATTGAGGTTTAA
1 GGCTTAGAG-TTGAGGTTTAG
*
18279665 GGTTTAGAGTT
1 GGCTTAGAGTT
18279676 TATATTTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.21, C:0.04, G:0.38, T:0.37
Consensus pattern (20 bp):
GGCTTAGAGTTGAGGTTTAG
Found at i:18280656 original size:7 final size:7
Alignment explanation
Indices: 18280637--18280667 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
18280627 GTTTATAGCA
18280637 TTTAGGG
1 TTTAGGG
18280644 TTTAGGG
1 TTTAGGG
*
18280651 TTTAGGA
1 TTTAGGG
18280658 TTTAGGG
1 TTTAGGG
18280665 TTT
1 TTT
18280668 CAGTGTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:18280662 original size:21 final size:22
Alignment explanation
Indices: 18280636--18280676 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
18280626 AGTTTATAGC
18280636 ATTTAGGGTTT-AGGGTTTAGG
1 ATTTAGGGTTTCAGGGTTTAGG
*
18280657 ATTTAGGGTTTCAGTGTTTA
1 ATTTAGGGTTTCAGGGTTTA
18280677 ATTACTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (22 bp):
ATTTAGGGTTTCAGGGTTTAGG
Found at i:18283175 original size:521 final size:509
Alignment explanation
Indices: 18282206--18283235 Score: 1756
Period size: 521 Copynumber: 2.0 Consensus size: 509
18282196 AACATCTTAA
*
18282206 GGTTCGAATGTCCGATTCTTCGTATTTATAGATTGGGTTTTGTCGTATTTTTAATTTTGATTTTG
1 GGTTCGAATGTCCGATTCTTCGTATTTATACATTGGGTTTTGTCGTATTTTTAATTTTGATTTTG
*** * *
18282271 CTTTCTTATTGGTTTAGGGTTTTCTGTGTGTTCTCTGTGTTTATGGTTTTCGGTGTGTTCGACCG
66 CTTTCTTATTGGTTTAGGGTTAAATGTGTATTCTCTGTGTTTAGGGTTTTCGGTGTGTTCGACCG
*
18282336 TTTTGTTCATCCTCGTGAAGGTAAATTACTGCTTCTATTGTTCATTACTGTTTTGTGAATGGTTT
131 TTTTGTTCATCCTCGTGAAGGTAAATTACTGCTTCTATTGTTCATTAATGTTTTGTGAATGGTTT
18282401 AATTTGTTAGGAACTGATTTTAACTTATGTTTTTTTCTCCAGTTTTTGGTCAATCCATTTCATTG
196 AATTTGTTAGGAACTGATTTTAACTTATGTTTTTTTCTCCAGTTTTTGGTCAATCCATTTCATTG
18282466 CTCGTATTTCAGTTTTCTTCATCGTTCTGAAGGTACAGAACACATGCTTTGTTACTGTTTATTTG
261 CTCGTATTTCAGTTTTCTTCATCGTTCTGAAGGTACAGAACACATGCTTTGTTACTGTTTATTTG
18282531 TTGAACTCATTTGGTACTGTTTTTAAAGTATGGAACTTTGATGTCTAGTTTAGGGTTTAATTTAT
326 TTGAACTCATTTGGTACTGTTTTTAAAGTATGGAACTTTGATGTCTAGTTTAGGGTTTAATTTAT
*
18282596 TAGGTTATAAAACCGTTCTATTAAATGTGGTGCAGCCGATTACATTTCCAGGTAATGAAATGGAT
391 TAGGTTATAAAACCGTTCTATTAAATGTGGTGCAGCCGATTACATTTCCAAGTAATGAAATGGAT
*
18282661 TTTTAAGTTGAATTTTATTAAGCCATGTTGTTTTTTAGTATGATTTTTAAGTTC
456 TTTTAAGTTGAATTTTATTAAGCCATGTTGTTTTTTAGTATGATTTCTAAGTTC
* * *
18282715 GGTTCGAATGTTCGATTCTTTGTATTTATACATTGGGTTTTTTCGTATTTTTAATTTTGATTTTG
1 GGTTCGAATGTCCGATTCTTCGTATTTATACATTGGGTTTTGTCGTATTTTTAATTTTGATTTTG
* * *
18282780 CTTTCTTATTGGTTGGTGATATTGGGATTAAAAAAT-TTTATTCTTTGTGTTTAGGGTTTTTGGT
66 CTTTCTTATTGG-T--T--TA--GGG-TT---AAATGTGTATTCTCTGTGTTTAGGGTTTTCGGT
*
18282844 GTGTTCGACTGTTTTGTTCATCCTCGTGAAGGTAAATTACTGCTTCTATTGTTCATTAATGTTTT
120 GTGTTCGACCGTTTTGTTCATCCTCGTGAAGGTAAATTACTGCTTCTATTGTTCATTAATG-TTT
18282909 TGTGAATGGTTTAATTTGTTAGGAACTGATTTTAACTTATGTTTTTTTTCTCCAGTTTTTGGTCA
184 TGTGAATGGTTTAATTTGTTAGGAACTGATTTTAACTTATG-TTTTTTTCTCCAGTTTTTGGTCA
*
18282974 ATCCATTTCATTGCTCGTATTTCAGTTTTCTTCATCGTTTTGAAGGTACAGAACACATGCTTTGT
248 ATCCATTTCATTGCTCGTATTTCAGTTTTCTTCATCGTTCTGAAGGTACAGAACACATGCTTTGT
18283039 TACTGTTTATTTGTTGAACTCATTTGGTACTGTTTTTAAAGTATGGAACTTTGATGTCTAGTTTA
313 TACTGTTTATTTGTTGAACTCATTTGGTACTGTTTTTAAAGTATGGAACTTTGATGTCTAGTTTA
* * *
18283104 GGGTTTAATTTATTAGGTTATAAAACTGTTTTGTTAAATGTGGTGCAGCCGATTACATTTCCAAG
378 GGGTTTAATTTATTAGGTTATAAAACCGTTCTATTAAATGTGGTGCAGCCGATTACATTTCCAAG
18283169 TAATGAAATGGATTTTTAAGTTGAATTTTATTAAGCCATGTTGTTTTTTAGTATGATTTCTAAGT
443 TAATGAAATGGATTTTTAAGTTGAATTTTATTAAGCCATGTTGTTTTTTAGTATGATTTCTAAGT
18283234 TC
508 TC
18283236 AAAATATATA
Statistics
Matches: 488, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
509 73 0.15
510 1 0.00
512 1 0.00
514 2 0.00
516 3 0.01
517 2 0.00
519 82 0.17
520 45 0.09
521 279 0.57
ACGTcount: A:0.21, C:0.11, G:0.19, T:0.48
Consensus pattern (509 bp):
GGTTCGAATGTCCGATTCTTCGTATTTATACATTGGGTTTTGTCGTATTTTTAATTTTGATTTTG
CTTTCTTATTGGTTTAGGGTTAAATGTGTATTCTCTGTGTTTAGGGTTTTCGGTGTGTTCGACCG
TTTTGTTCATCCTCGTGAAGGTAAATTACTGCTTCTATTGTTCATTAATGTTTTGTGAATGGTTT
AATTTGTTAGGAACTGATTTTAACTTATGTTTTTTTCTCCAGTTTTTGGTCAATCCATTTCATTG
CTCGTATTTCAGTTTTCTTCATCGTTCTGAAGGTACAGAACACATGCTTTGTTACTGTTTATTTG
TTGAACTCATTTGGTACTGTTTTTAAAGTATGGAACTTTGATGTCTAGTTTAGGGTTTAATTTAT
TAGGTTATAAAACCGTTCTATTAAATGTGGTGCAGCCGATTACATTTCCAAGTAATGAAATGGAT
TTTTAAGTTGAATTTTATTAAGCCATGTTGTTTTTTAGTATGATTTCTAAGTTC
Found at i:18284145 original size:21 final size:21
Alignment explanation
Indices: 18284119--18284165 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
18284109 CTACAACTTA
*
18284119 AAGCAGATGCGGCAGCGATG-G
1 AAGCAGAGGCGGCAGCGA-GAG
*
18284140 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
18284161 AAGCA
1 AAGCA
18284166 AAGGTTCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.34, C:0.19, G:0.40, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:18285057 original size:658 final size:658
Alignment explanation
Indices: 18283801--18285121 Score: 2579
Period size: 658 Copynumber: 2.0 Consensus size: 658
18283791 CTAACTATGT
18283801 GATTTATTTTTTAGGAAAAACTAAAGGATAAAAAGGCGGAGTACGAAGCGATTGTTTCTAGTGAT
1 GATTTATTTTTTAGGAAAAACTAAAGGATAAAAAGGCGGAGTACGAAGCGATTGTTTCTAGTGAT
*
18283866 AGTTCTGTTCATCCTGAAGACATTGATAACCGGATTATTACTGAAGTTTTGGGTCCTGAAAGGTA
66 AGTTCTGTTCATCCTGAAGACATTGATAACCGAATTATTACTGAAGTTTTGGGTCCTGAAAGGTA
18283931 TGGTCGGGTTCGATTTCAAGGATCTTTTGTTAGCCTAACCCAATATTTTGGATCCAGCTCGCAGC
131 TGGTCGGGTTCGATTTCAAGGATCTTTTGTTAGCCTAACCCAATATTTTGGATCCAGCTCGCAGC
18283996 AATACATGGCTTCGGGGACTCAGGCTCAAGCTGAAGTTCAGAGGTTAAAAGACCAGATGACTCAG
196 AATACATGGCTTCGGGGACTCAGGCTCAAGCTGAAGTTCAGAGGTTAAAAGACCAGATGACTCAG
18284061 ATGCAAGCGACCACAGTTGAGGTTCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGA
261 ATGCAAGCGACCACAGTTGAGGTTCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGA
* *
18284126 TGCGGCAGCGATGGAAGCAGAGGCTGCAGCGAGAGAAGCAAAGGTTCAAAAGAAATATGAAGAAC
326 TGCGGCAGCGAGGGAAACAGAGGCTGCAGCGAGAGAAGCAAAGGTTCAAAAGAAATATGAAGAAC
18284191 TGCAGCTAAAACTTAAAGCAGAGGCTGCAGCGAGAGAAGCAGAGCAGAGAAGAAAGTACAACGAA
391 TGCAGCTAAAACTTAAAGCAGAGGCTGCAGCGAGAGAAGCAGAGCAGAGAAGAAAGTACAACGAA
18284256 CTCCAGCAGCAGCTTGAGAGTATGATGAAGATGTTTCAGTCGCATCTTCTACCGTCATAGTGTAT
456 CTCCAGCAGCAGCTTGAGAGTATGATGAAGATGTTTCAGTCGCATCTTCTACCGTCATAGTGTAT
18284321 TGCATTAATATTTTTATCATTTTAACTTTTAACATTTTTGCAAAAATAGTATGAATTCACTTTTA
521 TGCATTAATATTTTTATCATTTTAACTTTTAACATTTTTGCAAAAATAGTATGAATTCACTTTTA
*
18284386 TTTATTGATATTAATATTATTTTATTCGTTTAATTTGAAATATTATATAAATTTATTACTTTTGG
586 TTTATTGATATTAATATTATTTTAGTCGTTTAATTTGAAATATTATATAAATTTATTACTTTTGG
18284451 CTGGTTTA
651 CTGGTTTA
18284459 GATTTATTTTTTAGGAAAAACTAAAGGATAAAAAGGCGGAGTACGAAGCGATTGTTTCTAGTGAT
1 GATTTATTTTTTAGGAAAAACTAAAGGATAAAAAGGCGGAGTACGAAGCGATTGTTTCTAGTGAT
18284524 AGTTCTGTTCATCCTGAAGACATTGATAACCGAATTATTACTGAAGTTTTGGGTCCTGAAAGGTA
66 AGTTCTGTTCATCCTGAAGACATTGATAACCGAATTATTACTGAAGTTTTGGGTCCTGAAAGGTA
18284589 TGGTCGGGTTCGATTTCAAGGATCTTTTGTTAGCCTAACCCAATATTTTGGATCCAGCTCGCAGC
131 TGGTCGGGTTCGATTTCAAGGATCTTTTGTTAGCCTAACCCAATATTTTGGATCCAGCTCGCAGC
18284654 AATACATGGCTTCGGGGACTCAGGCTCAAGCTGAAGTTCAGAGGTTAAAAGACCAGATGACTCAG
196 AATACATGGCTTCGGGGACTCAGGCTCAAGCTGAAGTTCAGAGGTTAAAAGACCAGATGACTCAG
*
18284719 ATGCAAGCGACCACAGTTGAGGTTCAAAGGAAATCTGAAGAACTCCAGCTACAACTTAAAGCAGA
261 ATGCAAGCGACCACAGTTGAGGTTCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGA
18284784 TGCGGCAGCGAGGGAAACAGAGGCTGCAGCGAGAGAAGCAAAGGTTCAAAAGAAATATGAAGAAC
326 TGCGGCAGCGAGGGAAACAGAGGCTGCAGCGAGAGAAGCAAAGGTTCAAAAGAAATATGAAGAAC
*
18284849 TGCAGCTAAAACTTAAAGCAGAGGCTGCAGCGAGAGAAGCAGAGCAGAGCAGAAAGTACAACGAA
391 TGCAGCTAAAACTTAAAGCAGAGGCTGCAGCGAGAGAAGCAGAGCAGAGAAGAAAGTACAACGAA
*
18284914 CTCCAGCAGCAGCTTGAGAGTATGATGAAGATGTTTCAGTCGCATCTTCTGCCGTCATAGTGTAT
456 CTCCAGCAGCAGCTTGAGAGTATGATGAAGATGTTTCAGTCGCATCTTCTACCGTCATAGTGTAT
18284979 TGCATTAATATTTTTATCATTTTAACTTTTAACATTTTTGCAAAAATAGTATGAATTCACTTTTA
521 TGCATTAATATTTTTATCATTTTAACTTTTAACATTTTTGCAAAAATAGTATGAATTCACTTTTA
18285044 TTTATTGATATTAATATTATTTTAGTCGTTTAATTTGAAATATTATATAAATTTATTACTTTTGG
586 TTTATTGATATTAATATTATTTTAGTCGTTTAATTTGAAATATTATATAAATTTATTACTTTTGG
18285109 CTGGTTTA
651 CTGGTTTA
18285117 GATTT
1 GATTT
18285122 GGTTGTTTTT
Statistics
Matches: 656, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
658 656 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (658 bp):
GATTTATTTTTTAGGAAAAACTAAAGGATAAAAAGGCGGAGTACGAAGCGATTGTTTCTAGTGAT
AGTTCTGTTCATCCTGAAGACATTGATAACCGAATTATTACTGAAGTTTTGGGTCCTGAAAGGTA
TGGTCGGGTTCGATTTCAAGGATCTTTTGTTAGCCTAACCCAATATTTTGGATCCAGCTCGCAGC
AATACATGGCTTCGGGGACTCAGGCTCAAGCTGAAGTTCAGAGGTTAAAAGACCAGATGACTCAG
ATGCAAGCGACCACAGTTGAGGTTCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGA
TGCGGCAGCGAGGGAAACAGAGGCTGCAGCGAGAGAAGCAAAGGTTCAAAAGAAATATGAAGAAC
TGCAGCTAAAACTTAAAGCAGAGGCTGCAGCGAGAGAAGCAGAGCAGAGAAGAAAGTACAACGAA
CTCCAGCAGCAGCTTGAGAGTATGATGAAGATGTTTCAGTCGCATCTTCTACCGTCATAGTGTAT
TGCATTAATATTTTTATCATTTTAACTTTTAACATTTTTGCAAAAATAGTATGAATTCACTTTTA
TTTATTGATATTAATATTATTTTAGTCGTTTAATTTGAAATATTATATAAATTTATTACTTTTGG
CTGGTTTA
Found at i:18285308 original size:42 final size:42
Alignment explanation
Indices: 18285208--18285367 Score: 243
Period size: 42 Copynumber: 3.8 Consensus size: 42
18285198 CGTTTTTGTA
*
18285208 AAAAAGCGCCGCTAAAGAACATGTTCTTTAGAGGCGCTTAA--
1 AAAAA-CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
* *
18285249 AAAAATGCCGCTAAAGAACATGTTCTTTAGTGGCGCTTAAGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
* *
18285291 AAAAACGCCGCTAAAGAACATGTTTTTTAGCGACGCTTAAGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
*
18285333 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
18285368 TTTTTAGTTG
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
40 33 0.31
41 5 0.05
42 70 0.65
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
Found at i:18285355 original size:84 final size:83
Alignment explanation
Indices: 18285208--18285367 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 83
18285198 CGTTTTTGTA
* *
18285208 AAAAAGCGCCGCTAAAGAACATGTTCTTTAGAGGCGCTTAAAAAAATGCCGCTAAAGAACATGTT
1 AAAAAGCGCCGCTAAAGAACATGTTCTTTAGAGACGCTTAAAAAAACGCCGCTAAAGAACATGTT
*
18285273 CTTTAGTGGCGCTTAAGG
66 CTTTAGCGGCGCTTAAGG
* * *
18285291 AAAAA-CGCCGCTAAAGAACATGTTTTTTAGCGACGCTTAAGGAAAAACGCCGCTAAAGATCATG
1 AAAAAGCGCCGCTAAAGAACATGTTCTTTAGAGACGCTTAA--AAAAACGCCGCTAAAGAACATG
18285355 TTCTTTAGCGGCG
64 TTCTTTAGCGGCG
18285368 TTTTTAGTTG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
82 32 0.46
83 5 0.07
84 32 0.46
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (83 bp):
AAAAAGCGCCGCTAAAGAACATGTTCTTTAGAGACGCTTAAAAAAACGCCGCTAAAGAACATGTT
CTTTAGCGGCGCTTAAGG
Found at i:18286033 original size:15 final size:16
Alignment explanation
Indices: 18286005--18286034 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18285995 TAAATTCATA
18286005 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
18286021 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
18286035 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:18286054 original size:18 final size:18
Alignment explanation
Indices: 18286026--18286160 Score: 94
Period size: 18 Copynumber: 8.0 Consensus size: 18
18286016 ATTATTAAGA
18286026 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
18286043 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
18286059 A-TTTAA-T-AATAAT-T
1 ATTTTAATTAAATTATAT
* *
18286073 ATTTCAAATTATATTATAT
1 ATTT-TAATTAAATTATAT
* * * *
18286092 AGTATAA-TATATTAT-G
1 ATTTTAATTAAATTATAT
*
18286108 ATTTT-AGTAAATTCATAT
1 ATTTTAATTAAATT-ATAT
18286126 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
*
18286143 ATTTTTATTAAATTATAT
1 ATTTTAATTAAATTATAT
18286161 TTAATAATAA
Statistics
Matches: 94, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
13 2 0.02
14 3 0.03
15 10 0.11
16 15 0.16
17 25 0.27
18 36 0.38
19 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:18286103 original size:61 final size:60
Alignment explanation
Indices: 18285931--18286118 Score: 142
Period size: 57 Copynumber: 3.1 Consensus size: 60
18285921 AAGTAGATTA
*
18285931 TAAAAAATATTTAATAATAATTATTTTAAATTATATTTTATAGTATCATATATTATGATTTTAG
1 TAAAATATATTTAATAATAATTATTTTAAATTATA-TTTATAGTAT-A-ATA-TATGATTTTAG
* * * *
18285995 T-AAAT-TCATATAAGAATATTTATTATTAAGA--AT-TTTAT--TA-AATTATAT-ATTTTAAT
1 TAAAATAT-ATTTAATAATAATTATT-TTAA-ATTATATTTATAGTATAA-TATATGATTTT-AG
*
18286051 TAAAATATATTTAATAATAATTATTTCAAATTATATTATATAGTATAATATATTATGATTTTAG
1 TAAAATATATTTAATAATAATTATTTTAAATTATATT-TATAGTAT-A-ATA-TATGATTTTAG
18286115 TAAA
1 TAAA
18286119 TTCATATATT
Statistics
Matches: 96, Mismatches: 10, Indels: 36
0.68 0.07 0.25
Matches are distributed among these distances:
55 6 0.06
56 9 0.09
57 23 0.24
58 3 0.03
59 5 0.05
61 7 0.07
62 1 0.01
63 22 0.23
64 14 0.15
65 6 0.06
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (60 bp):
TAAAATATATTTAATAATAATTATTTTAAATTATATTTATAGTATAATATATGATTTTAG
Found at i:18286385 original size:44 final size:46
Alignment explanation
Indices: 18286322--18286410 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
18286312 ACCTCTATTA
* * *
18286322 CATTCAATCAAACACAAGAA-TATC-ATTACGCCTCTATTCCATTC
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTC
18286366 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATT
1 CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATT
18286411 ACGCATCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
45 3 0.08
46 19 0.47
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.29
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTC
Found at i:18286413 original size:16 final size:16
Alignment explanation
Indices: 18286392--18286456 Score: 94
Period size: 16 Copynumber: 4.1 Consensus size: 16
18286382 AGAATTACCT
*
18286392 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
18286408 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
*
18286424 ATTAAGCATCTATTCC
1 ATTACGCATCTATTCC
* *
18286440 ATTACACCTCTATTCC
1 ATTACGCATCTATTCC
18286456 A
1 A
18286457 ATACAGCGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.37
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:18286562 original size:39 final size:39
Alignment explanation
Indices: 18286480--18286588 Score: 184
Period size: 39 Copynumber: 2.8 Consensus size: 39
18286470 AACGTGCTGT
*
18286480 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
* *
18286518 TAGACTTTAATTTTAGTTTTATTGAGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
18286557 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGT
18286589 GTAGTAACTA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 25 0.38
39 40 0.62
ACGTcount: A:0.19, C:0.03, G:0.27, T:0.51
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
Found at i:18287666 original size:16 final size:17
Alignment explanation
Indices: 18287636--18287673 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
18287626 TTAAATTTAA
18287636 TATTAGTTTGCTATTAT
1 TATTAGTTTGCTATTAT
*
18287653 TATTA-TTTGTTATTAT
1 TATTAGTTTGCTATTAT
18287669 TATTA
1 TATTA
18287674 ATCTTGTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (17 bp):
TATTAGTTTGCTATTAT
Found at i:18289001 original size:17 final size:17
Alignment explanation
Indices: 18288979--18289020 Score: 75
Period size: 17 Copynumber: 2.4 Consensus size: 17
18288969 TTCGACATTG
18288979 GGTAATTGGGTTGGGTT
1 GGTAATTGGGTTGGGTT
18288996 GGTAATTGGGTTGGGTT
1 GGTAATTGGGTTGGGTT
18289013 GGATAATT
1 GG-TAATT
18289021 TTATTTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (17 bp):
GGTAATTGGGTTGGGTT
Found at i:18290329 original size:27 final size:27
Alignment explanation
Indices: 18290298--18290353 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
18290288 TAAACTCTGC
18290298 CAGTAAATAACTATTCATATTCTGATT
1 CAGTAAATAACTATTCATATTCTGATT
18290325 CAGTAAATAACTATTCATATTCTGATT
1 CAGTAAATAACTATTCATATTCTGATT
18290352 CA
1 CA
18290354 TTTTAGAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (27 bp):
CAGTAAATAACTATTCATATTCTGATT
Found at i:18293726 original size:88 final size:87
Alignment explanation
Indices: 18293609--18293810 Score: 262
Period size: 90 Copynumber: 2.3 Consensus size: 87
18293599 AAATTTTTTT
* * * ** *
18293609 AAAAAAGTAATTAAGCTCCTGCTTTTTTTT-CACTCGTTTGGGTACTTGAACTTTTAAAATGCAT
1 AAAAAAGTAATTAAACCCCTACTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCAT
* *
18293673 CAAAAAGGCCCTCAAACCTTTTCA
66 CAAAAAGACCCTCAAA-C-TTTAA
* * *
18293697 AAAAAAGCAATTAATCCCCTACTTTTTTTTTGCACTTAATTGGGTACTTGAACTTTCAAAATGCA
1 AAAAAAGTAATTAAACCCCTAC-TTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCA
18293762 TCAAAAAGACCCTCAAACTTTAA
65 TCAAAAAGACCCTCAAACTTTAA
*
18293785 AAAAAAATAATTAAACCCCTACTTTT
1 AAAAAAGTAATTAAACCCCTACTTTT
18293811 ATTAAAAATT
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
87 4 0.04
88 41 0.41
89 9 0.09
90 45 0.45
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (87 bp):
AAAAAAGTAATTAAACCCCTACTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCAT
CAAAAAGACCCTCAAACTTTAA
Found at i:18293982 original size:19 final size:19
Alignment explanation
Indices: 18293886--18293981 Score: 93
Period size: 21 Copynumber: 4.7 Consensus size: 19
18293876 TTCAAATATT
18293886 AAAAATTTATTAAAAATTAGAA
1 AAAAATTTA-TAAAAATT-G-A
* *
18293908 AAAAAATTATAAAAATCATAA
1 AAAAATTTATAAAAAT--TGA
* *
18293929 AAAAATATATAAAAATTGT
1 AAAAATTTATAAAAATTGA
*
18293948 AAAATTTTATAAAAATTGCA
1 AAAAATTTATAAAAATTG-A
18293968 AAAAATTTATAAAA
1 AAAAATTTATAAAA
18293982 TATATAGAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
19 17 0.28
20 13 0.21
21 22 0.36
22 8 0.13
23 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAAATTTATAAAAATTGA
Found at i:18294009 original size:9 final size:9
Alignment explanation
Indices: 18293930--18294016 Score: 52
Period size: 9 Copynumber: 9.3 Consensus size: 9
18293920 AAATCATAAA
*
18293930 AAAATATAT
1 AAAATTTAT
* *
18293939 AAAAATTGT
1 AAAATTTAT
18293948 AAAATTTTAT
1 AAAA-TTTAT
* *
18293958 AAAAATTGCAA
1 -AAAATT-TAT
18293969 AAAATTTAT
1 AAAATTTAT
*
18293978 AAAATATAT
1 AAAATTTAT
*
18293987 AGAAA--TAA
1 A-AAATTTAT
18293995 AAAATTTAT
1 AAAATTTAT
18294004 AAAATTTTAT
1 AAAA-TTTAT
18294014 AAA
1 AAA
18294017 GTCATAAGAA
Statistics
Matches: 59, Mismatches: 12, Indels: 13
0.70 0.14 0.15
Matches are distributed among these distances:
7 3 0.05
8 3 0.05
9 26 0.44
10 22 0.37
11 5 0.08
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAATTTAT
Found at i:18294012 original size:10 final size:10
Alignment explanation
Indices: 18293885--18294016 Score: 78
Period size: 10 Copynumber: 13.4 Consensus size: 10
18293875 ATTCAAATAT
18293885 TAAAAATTTA
1 TAAAAATTTA
*
18293895 TTAAAAATTAGA
1 -TAAAAATT-TA
* *
18293907 AAAAAAATTA
1 TAAAAATTTA
*
18293917 TAAAAATCATA
1 TAAAAAT-TTA
* *
18293928 AAAAAATATA
1 TAAAAATTTA
*
18293938 TAAAAA-TTG
1 TAAAAATTTA
*
18293947 TAAAATTTTA
1 TAAAAATTTA
*
18293957 TAAAAATTGCA
1 TAAAAATT-TA
18293968 -AAAAATTTA
1 TAAAAATTTA
*
18293977 T-AAAATATA
1 TAAAAATTTA
*
18293986 TAGAAA--TA
1 TAAAAATTTA
18293994 -AAAAATTTA
1 TAAAAATTTA
*
18294003 TAAAATTTTA
1 TAAAAATTTA
18294013 TAAA
1 TAAA
18294017 GTCATAAGAA
Statistics
Matches: 92, Mismatches: 20, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
7 4 0.04
8 2 0.02
9 17 0.18
10 45 0.49
11 23 0.25
12 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.33
Consensus pattern (10 bp):
TAAAAATTTA
Found at i:18294292 original size:10 final size:10
Alignment explanation
Indices: 18294279--18294357 Score: 55
Period size: 10 Copynumber: 8.4 Consensus size: 10
18294269 ATAAAAAATT
18294279 ATAATTTTTA
1 ATAATTTTTA
18294289 ATAATTTTT-
1 ATAATTTTTA
18294298 AT-ATTTTT-
1 ATAATTTTTA
*
18294306 ATATTTTATTA
1 ATAATTT-TTA
18294317 A-AA--TTTA
1 ATAATTTTTA
*
18294324 AT-ATTTTTT
1 ATAATTTTTA
*
18294333 ATAATTTTTTT
1 ATAA-TTTTTA
*
18294344 CTAATTTTTA
1 ATAATTTTTA
18294354 ATAA
1 ATAA
18294358 GAGCAGAGGC
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
7 5 0.09
8 9 0.16
9 10 0.18
10 21 0.38
11 10 0.18
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:18294305 original size:8 final size:9
Alignment explanation
Indices: 18294219--18294341 Score: 72
Period size: 9 Copynumber: 13.6 Consensus size: 9
18294209 TCGTTAGGTT
*
18294219 TTTTTATGA
1 TTTTTATAA
18294228 TTTTTATAA
1 TTTTTATAA
* *
18294237 ATTTTACAA
1 TTTTTATAA
*
18294246 TTTTTA-ATT
1 TTTTTATA-A
*
18294255 TTTTTACAA
1 TTTTTATAA
*
18294264 TTGTTATAAA
1 TTTTTAT-AA
***
18294274 AAATTATAA
1 TTTTTATAA
18294283 TTTTTAATAA
1 TTTTT-ATAA
18294293 TTTTTAT-A
1 TTTTTATAA
*
18294301 TTTTTATAT
1 TTTTTATAA
18294310 TTTATTA-AA
1 TTT-TTATAA
* * *
18294319 ATTTAATAT
1 TTTTTATAA
18294328 TTTTTATAA
1 TTTTTATAA
18294337 TTTTT
1 TTTTT
18294342 TTCTAATTTT
Statistics
Matches: 85, Mismatches: 22, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
8 11 0.13
9 55 0.65
10 19 0.22
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:18294308 original size:37 final size:36
Alignment explanation
Indices: 18294219--18294308 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 36
18294209 TCGTTAGGTT
** *
18294219 TTTTTATGATTTTTAT-AAATTTTACAATTTTTAATT
1 TTTTTAT-ATTTTTATAAAAAATTACAATTTTTAATA
* * *
18294255 TTTTTACAATTGTTATAAAAAATTATAATTTTTAATAA
1 TTTTTA-TATTTTTATAAAAAATTACAATTTTTAAT-A
18294293 TTTTTATATTTTTATA
1 TTTTTATATTTTTATA
18294309 TTTTATTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
36 13 0.30
37 24 0.56
38 6 0.14
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (36 bp):
TTTTTATATTTTTATAAAAAATTACAATTTTTAATA
Found at i:18294323 original size:17 final size:17
Alignment explanation
Indices: 18294285--18294339 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
18294275 AATTATAATT
* * *
18294285 TTTAATAATTTTTATAT
1 TTTAATATTTTTTAAAA
*
18294302 TTTTATATTTTATTAAAA
1 TTTAATATTTT-TTAAAA
*
18294320 TTTAATATTTTTTATAA
1 TTTAATATTTTTTAAAA
18294337 TTT
1 TTT
18294340 TTTTCTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTAATATTTTTTAAAA
Found at i:18294339 original size:44 final size:47
Alignment explanation
Indices: 18294238--18294341 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 47
18294228 TTTTTATAAA
* *
18294238 TTTTACAATTTTTAATTTTTTTACAATTGTTATAAAAAATTATAATT
1 TTTTATAATTTTTAATATTTTTACAATTGTTATAAAAAATTATAATT
* * * *
18294285 TTTAATAATTTTT-ATATTTTTA-TATT-TTATTAAAATTTA-ATATT
1 TTTTATAATTTTTAATATTTTTACAATTGTTATAAAAAATTATA-ATT
18294329 TTTTATAATTTTT
1 TTTTATAATTTTT
18294342 TTCTAATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
43 1 0.02
44 26 0.53
45 3 0.06
46 8 0.16
47 11 0.22
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (47 bp):
TTTTATAATTTTTAATATTTTTACAATTGTTATAAAAAATTATAATT
Found at i:18294460 original size:89 final size:90
Alignment explanation
Indices: 18294365--18294537 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
18294355 TAAGAGCAGA
* *
18294365 GGCTTAATTAC-TTTTTTGAAAAA-TGTTAAGGGTCTTTCTGAT-ACATTTTGAAAGTTCAAGTA
1 GGCTTAATTACTTTTTTTGAAAAAGT-TTAAGGGCCTTTCTGATGA-ATTTTGAAAATTCAAGT-
18294427 CCT-AATTGAGTGAAAAAAAAAAGAAGG
63 CCTCAATTGAGTGAAAAAAAAAAGAAGG
* * * * **
18294454 GGCTTAATTGCTTTTTTTGAAGAAGTTTGAGGGCCTTTTTGATGAATTTTGAAAATTCAAGTGTT
1 GGCTTAATTACTTTTTTTGAAAAAGTTTAAGGGCCTTTCTGATGAATTTTGAAAATTCAAGTCCT
*
18294519 CAATTGAGTGCAAAAAAAA
66 CAATTGAGTGAAAAAAAAA
18294538 GGGGCTTAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
89 11 0.15
90 58 0.82
91 2 0.03
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (90 bp):
GGCTTAATTACTTTTTTTGAAAAAGTTTAAGGGCCTTTCTGATGAATTTTGAAAATTCAAGTCCT
CAATTGAGTGAAAAAAAAAAGAAGG
Found at i:18304358 original size:19 final size:19
Alignment explanation
Indices: 18304334--18304396 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
18304324 TCTAATTAAG
*
18304334 TAATAACTCTATTTCACTT
1 TAATAACTCTATTTAACTT
* * * ***
18304353 TAATAAGTTTATTAAAAAG
1 TAATAACTCTATTTAACTT
*
18304372 TAATAACTCTATTTTACTT
1 TAATAACTCTATTTAACTT
18304391 TAATAA
1 TAATAA
18304397 ACTATTGCTT
Statistics
Matches: 30, Mismatches: 14, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.03, T:0.44
Consensus pattern (19 bp):
TAATAACTCTATTTAACTT
Found at i:18304460 original size:18 final size:17
Alignment explanation
Indices: 18304431--18304465 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18304421 GTAATGTTTC
*
18304431 AAAAAATGTTTTTAGGA
1 AAAAAATGTTTTAAGGA
18304448 AAAAAATGTTTTTAAGGA
1 AAAAAATG-TTTTAAGGA
18304466 GAAGGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
AAAAAATGTTTTAAGGA
Found at i:18305822 original size:27 final size:27
Alignment explanation
Indices: 18305779--18305868 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
18305769 TTTTAGTCCT
* *
18305779 GTGCTGCCAATCTCTTTGACACCTTTG
1 GTGCCGCCAATCTCTTTGGCACCTTTG
*
18305806 GT-CAGGCCAATCTCTTTGGCACCTTTG
1 GTGC-CGCCAATCTCTTTGGCACCTTTG
*
18305833 GTGCCGCCAATCACTTTGGCACCTTTG
1 GTGCCGCCAATCTCTTTGGCACCTTTG
18305860 GTGCCGCCA
1 GTGCCGCCA
18305869 CAGGTTTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.14, C:0.32, G:0.22, T:0.31
Consensus pattern (27 bp):
GTGCCGCCAATCTCTTTGGCACCTTTG
Found at i:18305889 original size:15 final size:16
Alignment explanation
Indices: 18305869--18305898 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18305859 GGTGCCGCCA
18305869 CAGGTTTTT-TTTTTG
1 CAGGTTTTTGTTTTTG
18305884 CAGGTTTTTGTTTTT
1 CAGGTTTTTGTTTTT
18305899 TTTGGTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.07, C:0.07, G:0.20, T:0.67
Consensus pattern (16 bp):
CAGGTTTTTGTTTTTG
Found at i:18306677 original size:42 final size:42
Alignment explanation
Indices: 18306630--18306716 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
18306620 TCTTGTGAAT
18306630 TTCCAGCCATCTTTATTACTCAAAAAGATCGATCGGTACTCA
1 TTCCAGCCATCTTTATTACTCAAAAAGATCGATCGGTACTCA
18306672 TTCCAGCCATCTTTATTACTCAAAAAGATCGATCGGTACTCA
1 TTCCAGCCATCTTTATTACTCAAAAAGATCGATCGGTACTCA
18306714 TTC
1 TTC
18306717 TTGGTAGCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (42 bp):
TTCCAGCCATCTTTATTACTCAAAAAGATCGATCGGTACTCA
Found at i:18308561 original size:16 final size:17
Alignment explanation
Indices: 18308535--18308568 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
18308525 ACATATGACA
18308535 AAAAAATTATAAAAAAT
1 AAAAAATTATAAAAAAT
18308552 AAAAAA-TATAAAAAAT
1 AAAAAATTATAAAAAAT
18308568 A
1 A
18308569 TTAAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAATTATAAAAAAT
Found at i:18308584 original size:19 final size:20
Alignment explanation
Indices: 18308562--18308606 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
18308552 AAAAAATATA
18308562 AAAAATATTAAAT-TTTAAT
1 AAAAATATTAAATATTTAAT
*
18308581 AAAAATATTAAATATTTATT
1 AAAAATATTAAATATTTAAT
18308601 AAAAAT
1 AAAAAT
18308607 TAAAAAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATATTAAATATTTAAT
Found at i:18308727 original size:9 final size:9
Alignment explanation
Indices: 18308536--18308732 Score: 59
Period size: 9 Copynumber: 21.0 Consensus size: 9
18308526 CATATGACAA
18308536 AAAAATTAT
1 AAAAATTAT
18308545 AAAAA--AT
1 AAAAATTAT
*
18308552 AAAAAATAT
1 AAAAATTAT
*
18308561 AAAAAATATT
1 AAAAATTA-T
**
18308571 AAATTTTAAT
1 AAAAATT-AT
18308581 AAAAA-TATT
1 AAAAATTA-T
*
18308590 AAATATTTATT
1 AAA-AATTA-T
18308601 AAAAATTA-
1 AAAAATTAT
**
18308609 AAAAATCGT
1 AAAAATTAT
*
18308618 AAAATATTGT
1 AAAA-ATTAT
18308628 -AAAATATAT
1 AAAAAT-TAT
* *
18308637 AGAAATATAG
1 AAAAAT-TAT
*
18308647 AAAAAATAT
1 AAAAATTAT
*
18308656 -AAAATTTT
1 AAAAATTAT
*
18308664 ATAAAGTCGTA-
1 A-AAAAT--TAT
18308675 AGAAAATTAT
1 A-AAAATTAT
*
18308685 AAAAAATAT
1 AAAAATTAT
*
18308694 AAAGAAATAT
1 AAA-AATTAT
18308704 -AAAATTCAT
1 AAAAATT-AT
18308713 AAAAAAATTAT
1 --AAAAATTAT
18308724 AAAAATTAT
1 AAAAATTAT
18308733 CTACCAAAAG
Statistics
Matches: 143, Mismatches: 24, Indels: 42
0.68 0.11 0.20
Matches are distributed among these distances:
7 7 0.05
8 18 0.13
9 56 0.39
10 40 0.28
11 15 0.10
12 7 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:18308933 original size:19 final size:19
Alignment explanation
Indices: 18308911--18309063 Score: 90
Period size: 19 Copynumber: 8.2 Consensus size: 19
18308901 TTTTTATGCA
18308911 TTTT-ATAATTTTTAATAAT
1 TTTTAATAATTTTT-ATAAT
* *
18308930 TTTT-ATAGAATTTTACAAT
1 TTTTAATA-ATTTTTATAAT
* * *
18308949 TTTTTATATTTTTTATGAT
1 TTTTAATAATTTTTATAAT
*
18308968 TTTTAAT--TTTTTTTAA-
1 TTTTAATAATTTTTATAAT
18308984 TTTTAATAAAATTTTTAT-AT
1 TTTTAAT--AATTTTTATAAT
*
18309004 TTTT-AT-ATTTTTATTAAA
1 TTTTAATAATTTTTA-TAAT
* *
18309022 ATTTAATAATTTTTTATAAA
1 TTTTAATAA-TTTTTATAAT
* *
18309042 TTTTATTGA-TTTTATAAT
1 TTTTAATAATTTTTATAAT
18309060 TTTT
1 TTTT
18309064 TTGCCACATG
Statistics
Matches: 106, Mismatches: 16, Indels: 25
0.72 0.11 0.17
Matches are distributed among these distances:
16 14 0.13
17 8 0.08
18 16 0.15
19 33 0.31
20 29 0.27
21 6 0.06
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTAATAATTTTTATAAT
Found at i:18308959 original size:28 final size:29
Alignment explanation
Indices: 18308901--18309064 Score: 155
Period size: 28 Copynumber: 5.9 Consensus size: 29
18308891 TAAATGACAT
* *
18308901 TTTTTAT-GCATTTTATAATTTTTAATAA
1 TTTTTATAGAATTTTATAATTTTTTATAA
* *
18308929 TTTTTATAGAATTTTACAATTTTTTATAT
1 TTTTTATAGAATTTTATAATTTTTTATAA
*
18308958 TTTTTAT-G-ATTTT-TAATTTTTTTTAA
1 TTTTTATAGAATTTTATAATTTTTTATAA
* *
18308984 TTTTAATAAAATTTT-T-ATATTTTTAT-A
1 TTTTTATAGAATTTTATAAT-TTTTTATAA
* *
18309011 TTTTTATTAAAATTTAATAATTTTTTATAA
1 TTTTTA-TAGAATTTTATAATTTTTTATAA
* *
18309041 ATTTTATTG-ATTTTATAATTTTTT
1 TTTTTATAGAATTTTATAATTTTTT
18309065 TGCCACATGT
Statistics
Matches: 112, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
26 16 0.14
27 13 0.12
28 42 0.38
29 33 0.29
30 8 0.07
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTTTATAGAATTTTATAATTTTTTATAA
Found at i:18308960 original size:8 final size:8
Alignment explanation
Indices: 18308949--18309017 Score: 50
Period size: 8 Copynumber: 7.9 Consensus size: 8
18308939 ATTTTACAAT
18308949 TTTTTATA
1 TTTTTATA
18308957 TTTTTTATGA
1 -TTTTTAT-A
18308967 TTTTTA-A
1 TTTTTATA
*
18308974 TTTTTTTTAA
1 -TTTTTAT-A
*
18308984 TTTTAATAAAA
1 TTTT--T-ATA
18308995 TTTTTATA
1 TTTTTATA
18309003 TTTTTATA
1 TTTTTATA
18309011 TTTTTAT
1 TTTTTAT
18309018 TAAAATTTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
7 1 0.02
8 22 0.45
9 18 0.37
10 2 0.04
11 6 0.12
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (8 bp):
TTTTTATA
Found at i:18309014 original size:37 final size:36
Alignment explanation
Indices: 18308958--18309039 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 36
18308948 TTTTTTATAT
* *
18308958 TTTTTATGATTTTTAATTTTT-TTTAATTTTAATAAAA
1 TTTTTAT-ATTTTTAATTTTTATTAAAATTTAAT-AAA
*
18308995 TTTTTATATTTTTATATTTTTATTAAAATTTAATAAT
1 TTTTTATATTTTTA-ATTTTTATTAAAATTTAATAAA
18309032 TTTTTATA
1 TTTTTATA
18309040 AATTTTATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
36 7 0.17
37 23 0.57
38 10 0.25
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (36 bp):
TTTTTATATTTTTAATTTTTATTAAAATTTAATAAA
Found at i:18309064 original size:10 final size:9
Alignment explanation
Indices: 18308911--18309063 Score: 98
Period size: 9 Copynumber: 16.4 Consensus size: 9
18308901 TTTTTATGCA
18308911 TTTTATAAT
1 TTTTATAAT
18308920 TTTTAATAAT
1 TTTT-ATAAT
*
18308930 TTTTATAGAA
1 TTTTATA-AT
*
18308940 TTTTACAATT
1 TTTTATAA-T
*
18308950 TTTTATATT
1 TTTTATAAT
*
18308959 TTTTATGAT
1 TTTTATAAT
*
18308968 TTTTA-ATT
1 TTTTATAAT
*
18308976 TTTTTTAAT
1 TTTTATAAT
*
18308985 TTTAATAAAAT
1 TTT--TATAAT
18308996 TTTTAT-AT
1 TTTTATAAT
18309004 TTTTAT-AT
1 TTTTATAAT
*
18309012 TTTTATTAAAA
1 TTTTA-T-AAT
*
18309023 TTTAATAATT
1 TTTTATAA-T
*
18309033 TTTTATAAA
1 TTTTATAAT
*
18309042 TTTTATTGA-
1 TTTTA-TAAT
18309051 TTTTATAAT
1 TTTTATAAT
18309060 TTTT
1 TTTT
18309064 TTGCCACATG
Statistics
Matches: 111, Mismatches: 21, Indels: 24
0.71 0.13 0.15
Matches are distributed among these distances:
8 22 0.20
9 45 0.41
10 32 0.29
11 12 0.11
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:18309332 original size:88 final size:88
Alignment explanation
Indices: 18309138--18309451 Score: 337
Period size: 89 Copynumber: 3.5 Consensus size: 88
18309128 TCAAAGGGGT
** * * *
18309138 TTTTTTAATGCATTTTGGCAGTTTAAGTATC-CAATTAAGTGTAAAAAAAAGTAGGGGCTTAATT
1 TTTTTT-ATGCATTTTGAAAGTTCAAGTA-CACAATTGAGTGTAAAAAAAAGTAGGGGATTAATT
*
18309202 TCTTTTCTTGAAAAAGTTTGAGGGCA
64 ACTTTT-TTGAAAAAGTTTGAGGGCA
* * **
18309228 TTTTTTATGTATTTTGAAAGTTCAAGTACACAATTGAGTGTAAAAAAAAG-GGGGGATTAATGGC
1 TTTTTTATGCATTTTGAAAGTTCAAGTACACAATTGAGTGTAAAAAAAAGTAGGGGATTAATTAC
***
18309292 TTTTTT-TTTAAGTTTGAGGGCA
66 TTTTTTGAAAAAGTTTGAGGGCA
* * * * * *
18309314 TTTTTTTTATGCATTTTGAAATTTTAAGTACACAATTGACTGGAAAAAAAAGTAAGGGTTTAATT
1 --TTTTTTATGCATTTTGAAAGTTCAAGTACACAATTGAGTGTAAAAAAAAGTAGGGGATTAATT
18309379 ACTTTTTATGAAAAAGTTTGAGGGCA
64 ACTTTTT-TGAAAAAGTTTGAGGGCA
* ** * *
18309405 TTTTTGATAAATTTTGAAAGTTCAAGTACTCAATTGAGTGCAAAAAA
1 TTTTTTATGCATTTTGAAAGTTCAAGTACACAATTGAGTGTAAAAAA
18309452 CAAAAACAAA
Statistics
Matches: 185, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
86 13 0.07
87 2 0.01
88 60 0.32
89 90 0.49
90 7 0.04
91 13 0.07
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.39
Consensus pattern (88 bp):
TTTTTTATGCATTTTGAAAGTTCAAGTACACAATTGAGTGTAAAAAAAAGTAGGGGATTAATTAC
TTTTTTGAAAAAGTTTGAGGGCA
Found at i:18310297 original size:16 final size:16
Alignment explanation
Indices: 18310276--18310307 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
18310266 ATCACCAAAA
18310276 TATTTTTTCGCTGCGC
1 TATTTTTTCGCTGCGC
18310292 TATTTTTTCGCTGCGC
1 TATTTTTTCGCTGCGC
18310308 CATGGGGCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
TATTTTTTCGCTGCGC
Found at i:18312304 original size:13 final size:13
Alignment explanation
Indices: 18312286--18312310 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18312276 AAATTCAATG
18312286 TCAATTTCATATA
1 TCAATTTCATATA
18312299 TCAATTTCATAT
1 TCAATTTCATAT
18312311 CTAAACATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (13 bp):
TCAATTTCATATA
Found at i:18312990 original size:7 final size:8
Alignment explanation
Indices: 18312971--18313029 Score: 52
Period size: 8 Copynumber: 7.4 Consensus size: 8
18312961 ATTCCTTAAG
18312971 TCATATAA
1 TCATATAA
18312979 TCATAT-A
1 TCATATAA
*
18312986 TCATAAAA
1 TCATATAA
18312994 TCA-ATCCAA
1 TCATAT--AA
18313003 GTCATATAA
1 -TCATATAA
18313012 TCATAT-A
1 TCATATAA
*
18313019 TCATAAAA
1 TCATATAA
18313027 TCA
1 TCA
18313030 ATCCAAGTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
7 13 0.31
8 20 0.48
9 4 0.10
10 3 0.07
11 2 0.05
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (8 bp):
TCATATAA
Found at i:18312995 original size:15 final size:15
Alignment explanation
Indices: 18312971--18313029 Score: 57
Period size: 15 Copynumber: 3.7 Consensus size: 15
18312961 ATTCCTTAAG
*
18312971 TCATATAATCATATA
1 TCATAAAATCATATA
18312986 TCATAAAATCA-ATCCAA
1 TCATAAAATCATAT---A
*
18313003 GTCATATAATCATATA
1 -TCATAAAATCATATA
18313019 TCATAAAATCA
1 TCATAAAATCA
18313030 ATCCAAGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
14 2 0.06
15 20 0.56
16 1 0.03
17 1 0.03
18 10 0.28
19 2 0.06
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (15 bp):
TCATAAAATCATATA
Found at i:18313010 original size:33 final size:33
Alignment explanation
Indices: 18312968--18313043 Score: 152
Period size: 33 Copynumber: 2.3 Consensus size: 33
18312958 TTCATTCCTT
18312968 AAGTCATATAATCATATATCATAAAATCAATCC
1 AAGTCATATAATCATATATCATAAAATCAATCC
18313001 AAGTCATATAATCATATATCATAAAATCAATCC
1 AAGTCATATAATCATATATCATAAAATCAATCC
18313034 AAGTCATATA
1 AAGTCATATA
18313044 GCTAAATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.30
Consensus pattern (33 bp):
AAGTCATATAATCATATATCATAAAATCAATCC
Found at i:18313013 original size:18 final size:18
Alignment explanation
Indices: 18312986--18313041 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
18312976 TAATCATATA
18312986 TCATAAAATCAATCCAAG
1 TCATAAAATCAATCCAAG
*
18313004 TCATATAATC-AT--ATA-
1 TCATAAAATCAATCCA-AG
18313019 TCATAAAATCAATCCAAG
1 TCATAAAATCAATCCAAG
18313037 TCATA
1 TCATA
18313042 TAGCTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 10 0.32
16 3 0.10
17 3 0.10
18 15 0.48
ACGTcount: A:0.48, C:0.20, G:0.04, T:0.29
Consensus pattern (18 bp):
TCATAAAATCAATCCAAG
Found at i:18313426 original size:22 final size:22
Alignment explanation
Indices: 18313400--18313490 Score: 105
Period size: 23 Copynumber: 4.0 Consensus size: 22
18313390 TTGAGCAGGT
18313400 AAACGGTAAGCTCTATCA-AGCTG
1 AAACGGTAAGCTC-AT-AGAGCTG
*
18313423 -AACGGTAAGCTCCGTAGAGCTG
1 AAACGGTAAGCT-CATAGAGCTG
*
18313445 AAACAGTAAGCTCATAAGAGCTG
1 AAACGGTAAGCTCAT-AGAGCTG
18313468 AAACGGTAAGCTCATACGAGCTG
1 AAACGGTAAGCTCATA-GAGCTG
18313491 TGGTGAGTCC
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
21 1 0.02
22 20 0.34
23 38 0.64
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (22 bp):
AAACGGTAAGCTCATAGAGCTG
Found at i:18313489 original size:46 final size:45
Alignment explanation
Indices: 18313400--18313490 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 45
18313390 TTGAGCAGGT
* * *
18313400 AAACGGTAAGCTCTATCAAGCTGAACGGTAAGCTCCGTAGAGCTG
1 AAACAGTAAGCTCTATAAAGCTGAACGGTAAGCTCCATAGAGCTG
18313445 AAACAGTAAGCTC-ATAAGAGCTGAAACGGTAAGCT-CATACGAGCTG
1 AAACAGTAAGCTCTATAA-AGCTG-AACGGTAAGCTCCATA-GAGCTG
18313491 TGGTGAGTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
44 3 0.08
45 20 0.50
46 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (45 bp):
AAACAGTAAGCTCTATAAAGCTGAACGGTAAGCTCCATAGAGCTG
Found at i:18316919 original size:14 final size:12
Alignment explanation
Indices: 18316895--18316928 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
18316885 CAAACTTATA
18316895 AAAAGTATTTTT
1 AAAAGTATTTTT
18316907 CAAAAGTACTTTTT
1 -AAAAGTA-TTTTT
18316921 AAAAGTAT
1 AAAAGTAT
18316929 ACTAAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.05
13 14 0.70
14 5 0.25
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.41
Consensus pattern (12 bp):
AAAAGTATTTTT
Found at i:18321954 original size:28 final size:28
Alignment explanation
Indices: 18321925--18321995 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
18321915 TATAAAAAAT
18321925 AAAATTATTAAAAATGAT-ATAAATTCATA
1 AAAATTA-TAAAAAT-ATAATAAATTCATA
*
18321954 AAAATTATAAAAATATAATAAATT-TTA
1 AAAATTATAAAAATATAATAAATTCATA
18321981 ACAAATTATAAAAAT
1 A-AAATTATAAAAAT
18321996 TACAAAAGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
28 27 0.69
29 7 0.18
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (28 bp):
AAAATTATAAAAATATAATAAATTCATA
Found at i:18321958 original size:10 final size:9
Alignment explanation
Indices: 18321895--18322002 Score: 84
Period size: 10 Copynumber: 12.0 Consensus size: 9
18321885 TTAATTTAAT
18321895 ATTA-AAAA
1 ATTATAAAA
18321903 ATTA-AAAA
1 ATTATAAAA
18321911 TATTTATAAAA
1 -A-TTATAAAA
18321922 A--AT-AAA
1 ATTATAAAA
18321928 ATTATTAAAA
1 ATTA-TAAAA
* *
18321938 ATGATATAA
1 ATTATAAAA
18321947 ATTCATAAAA
1 ATT-ATAAAA
18321957 ATTATAAAA
1 ATTATAAAA
18321966 A-TATAATAA
1 ATTATAA-AA
*
18321975 ATTTTAACAA
1 ATTATAA-AA
18321985 ATTATAAAA
1 ATTATAAAA
*
18321994 ATTACAAAA
1 ATTATAAAA
18322003 GTAACAAAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 19
0.75 0.07 0.17
Matches are distributed among these distances:
6 4 0.05
7 2 0.02
8 14 0.17
9 28 0.34
10 30 0.37
11 4 0.05
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (9 bp):
ATTATAAAA
Found at i:18321967 original size:19 final size:18
Alignment explanation
Indices: 18321895--18322002 Score: 84
Period size: 19 Copynumber: 6.0 Consensus size: 18
18321885 TTAATTTAAT
18321895 ATTA-AAAAATTA-AAAA
1 ATTATAAAAATTATAAAA
18321911 TATTTATAAAAA--AT-AAA
1 -A-TTATAAAAATTATAAAA
* *
18321928 ATTATTAAAAATGATATAA
1 ATTA-TAAAAATTATAAAA
18321947 ATTCATAAAAATTATAAAA
1 ATT-ATAAAAATTATAAAA
*
18321966 A-TATAATAAATTTTAACAA
1 ATTATAA-AAATTATAA-AA
*
18321985 ATTATAAAAATTACAAAA
1 ATTATAAAAATTATAAAA
18322003 GTAACAAAGC
Statistics
Matches: 74, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
15 3 0.04
16 7 0.09
17 9 0.12
18 16 0.22
19 33 0.45
20 6 0.08
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (18 bp):
ATTATAAAAATTATAAAA
Found at i:18322471 original size:10 final size:9
Alignment explanation
Indices: 18322453--18322627 Score: 67
Period size: 10 Copynumber: 18.6 Consensus size: 9
18322443 TTTATGTTTA
18322453 TTTATAATT
1 TTTATAATT
18322462 TTTATAAATT
1 TTTAT-AATT
*
18322472 TATATTAATT
1 TTTA-TAATT
* *
18322482 TTAAT-TTT
1 TTTATAATT
18322490 TTTAATAATTT
1 TTT-ATAA-TT
*
18322501 TTTACAATT
1 TTTATAATT
18322510 TTT-TAAAGTT
1 TTTAT-AA-TT
* * *
18322520 CTAATACGTT
1 TTTATA-ATT
*
18322530 TTT-TTA-T
1 TTTATAATT
18322537 TTTA-AATAT
1 TTTATAAT-T
18322546 TTTATTAA-T
1 TTTA-TAATT
18322555 TTTATAACTT
1 TTTATAA-TT
18322565 TTTATAATT
1 TTTATAATT
* *
18322574 TATTAGATTT
1 T-TTATAATT
18322584 TTTAT-ATT
1 TTTATAATT
18322592 TTTGATAATT
1 TTT-ATAATT
*
18322602 TTTATAGTTTT
1 TTTATA--ATT
18322613 TTTATGAATT
1 TTTAT-AATT
18322623 TTTAT
1 TTTAT
18322628 TTTTAATATT
Statistics
Matches: 122, Mismatches: 22, Indels: 43
0.65 0.12 0.23
Matches are distributed among these distances:
7 5 0.04
8 12 0.10
9 37 0.30
10 51 0.42
11 16 0.13
12 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:18322572 original size:18 final size:17
Alignment explanation
Indices: 18322535--18322612 Score: 61
Period size: 18 Copynumber: 4.3 Consensus size: 17
18322525 ACGTTTTTTT
18322535 ATTTTA-AATATTTTATTA
1 ATTTTATAAT-TTTTA-TA
18322553 ATTTTATAACTTTTTATA
1 ATTTTATAA-TTTTTATA
18322571 A-TTTATTAGATTTTTTATA
1 ATTTTA-TA-A-TTTTTATA
*
18322590 TTTTTGATAATTTTTATA
1 ATTTT-ATAATTTTTATA
*
18322608 GTTTT
1 ATTTT
18322613 TTTATGAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
17 4 0.08
18 23 0.45
19 17 0.33
20 6 0.12
21 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (17 bp):
ATTTTATAATTTTTATA
Found at i:18322613 original size:29 final size:29
Alignment explanation
Indices: 18322554--18322617 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
18322544 ATTTTATTAA
*
18322554 TTTTATAACTTTTTATAATTTATTAGATT
1 TTTTATAACTTTTGATAATTTATTAGATT
* * *
18322583 TTTTAT-ATTTTTGATAATTTTTATAGTTT
1 TTTTATAACTTTTGATAATTTAT-TAGATT
18322612 TTTTAT
1 TTTTAT
18322618 GAATTTTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.67
Consensus pattern (29 bp):
TTTTATAACTTTTGATAATTTATTAGATT
Found at i:18322622 original size:21 final size:18
Alignment explanation
Indices: 18322582--18322631 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
18322572 TTTATTAGAT
18322582 TTTTTATATTTTTGATAA
1 TTTTTATATTTTTGATAA
*
18322600 TTTTTATAGTTTTTTTATGAA
1 TTTTTATA--TTTTTGAT-AA
18322621 TTTTTAT-TTTT
1 TTTTTATATTTT
18322632 AATATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 12 0.43
20 7 0.25
21 9 0.32
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (18 bp):
TTTTTATATTTTTGATAA
Done.