Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 72 of 230
Found at i:19735040 original size:23 final size:23
Alignment explanation
Indices: 19735006--19735049 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
19734996 TTTTTACTCT
*
19735006 TTTAGTTTCTTTATTCTTTTATG
1 TTTAGTTTCTTTATTATTTTATG
19735029 TTTA-TTTACTTTATTATTTTA
1 TTTAGTTT-CTTTATTATTTTA
19735050 ATGATAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.70
Consensus pattern (23 bp):
TTTAGTTTCTTTATTATTTTATG
Found at i:19742385 original size:30 final size:30
Alignment explanation
Indices: 19742328--19742389 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
19742318 GCTTTTTGAA
* *
19742328 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
19742358 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
19742388 AA
1 AA
19742390 AAACAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:19749583 original size:21 final size:22
Alignment explanation
Indices: 19749549--19749627 Score: 90
Period size: 23 Copynumber: 3.5 Consensus size: 22
19749539 GAATGTGCAG
19749549 ACTTCACTTTGCACTGAAGTGCC
1 ACTTCAC-TTGCACTGAAGTGCC
*
19749572 AC-TCACTTGCAC-CATAGTGCC
1 ACTTCACTTGCACTGA-AGTGCC
*
19749593 ACTTTCACTTGCACTGTAGTGCC
1 AC-TTCACTTGCACTGAAGTGCC
19749616 ACTATCACTTGC
1 ACT-TCACTTGC
19749628 GTGCTTAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.02
21 14 0.29
22 5 0.10
23 28 0.58
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (22 bp):
ACTTCACTTGCACTGAAGTGCC
Found at i:19752116 original size:21 final size:22
Alignment explanation
Indices: 19752083--19752123 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
19752073 AAATATAAGT
*
19752083 ATAAATAATATAATT-AAGAAC
1 ATAAATAACATAATTCAAGAAC
*
19752104 ATAAATAGCATAATTCAAGA
1 ATAAATAACATAATTCAAGA
19752124 GGAGAAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (22 bp):
ATAAATAACATAATTCAAGAAC
Found at i:19752247 original size:25 final size:25
Alignment explanation
Indices: 19752214--19752265 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
19752204 AAACTAATAC
* * *
19752214 AAATGATATAATCGATAAAATACAA
1 AAATAATATAATCAAGAAAATACAA
19752239 AAATAATATAATCAAGAAAATACAA
1 AAATAATATAATCAAGAAAATACAA
19752264 AA
1 AA
19752266 GTGCCATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.21
Consensus pattern (25 bp):
AAATAATATAATCAAGAAAATACAA
Found at i:19752569 original size:16 final size:17
Alignment explanation
Indices: 19752543--19752574 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
19752533 CTGAATACAT
19752543 AATAAATAAAATATAAG
1 AATAAATAAAATATAAG
19752560 AATAAA-AAAATATAA
1 AATAAATAAAATATAA
19752575 TTAAGAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AATAAATAAAATATAAG
Found at i:19762346 original size:25 final size:25
Alignment explanation
Indices: 19762318--19762380 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
19762308 AAGTGTTTTT
*
19762318 AGTATAGT-CTATCTATAGTAGTCTC
1 AGTATA-TACTATCTATAGAAGTCTC
*
19762343 AGTATATACTATCTATAGAAGTTTC
1 AGTATATACTATCTATAGAAGTCTC
*
19762368 AGGATATACTATC
1 AGTATATACTATC
19762381 AAAGACAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (25 bp):
AGTATATACTATCTATAGAAGTCTC
Found at i:19762390 original size:25 final size:25
Alignment explanation
Indices: 19762326--19762393 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
19762316 TTAGTATAGT
* * * *
19762326 CTATCTATAGTAGTCTCAGTATATA
1 CTATCTAAAGAAGTTTCAGGATATA
*
19762351 CTATCTATAGAAGTTTCAGGATATA
1 CTATCTAAAGAAGTTTCAGGATATA
19762376 CTATC-AAAGACAGTTTCA
1 CTATCTAAAGA-AGTTTCA
19762394 ATTTCAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 4 0.11
25 34 0.89
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (25 bp):
CTATCTAAAGAAGTTTCAGGATATA
Found at i:19762513 original size:15 final size:14
Alignment explanation
Indices: 19762479--19762513 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
19762469 GTAAAAAAAT
19762479 TTAAAAATCAGTTC
1 TTAAAAATCAGTTC
19762493 TTAAAAATCACG-TC
1 TTAAAAATCA-GTTC
19762507 TTAAAAA
1 TTAAAAA
19762514 CCCACATCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.95
15 1 0.05
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (14 bp):
TTAAAAATCAGTTC
Found at i:19778196 original size:42 final size:42
Alignment explanation
Indices: 19778139--19778426 Score: 239
Period size: 42 Copynumber: 6.8 Consensus size: 42
19778129 AGACACGGTA
* * * *
19778139 ACCTTGATGCTTGGATGTACGGGAGCCTCGAGCACCATTGGC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGGC
* *
19778181 ACCTTGGTGCATGGATGTGTGGGAGCATC-AGACACCATCGGC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGGC
** * * *
19778223 AAGTTAG-GCTATTGGTTGTG-GGAAGCCTCGGAG-ACCATCGGC
1 ACCTTGGTGC-A-TGGATGTGCGGGAGCCTC-GAGCACCATCGGC
* * ** *
19778265 ACCTCGGTGCTAT-GATGTGCGAGAGCCTCG-GACACTGTCAGC
1 ACCTTGGTGC-ATGGATGTGCGGGAGCCTCGAG-CACCATCGGC
* * * *
19778307 AACCTAGGTCCTTGG-TCGTGCGGGAGCCTCGAGCACCATTGGC
1 -ACCTTGGTGCATGGAT-GTGCGGGAGCCTCGAGCACCATCGGC
* *
19778350 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGGC
* *
19778392 ACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCAC
1 ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCAC
19778427 GAAAGCTAAA
Statistics
Matches: 194, Mismatches: 38, Indels: 28
0.75 0.15 0.11
Matches are distributed among these distances:
40 1 0.01
41 10 0.05
42 140 0.72
43 40 0.21
44 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (42 bp):
ACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGGC
Found at i:19778673 original size:24 final size:24
Alignment explanation
Indices: 19778643--19778713 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
19778633 AAGTTTCTGA
19778643 TGGTGCTCCGGCGATCCGTCCCGG
1 TGGTGCTCCGGCGATCCGTCCCGG
19778667 TGGTGCTCCGGCGATCCGTCCCGG
1 TGGTGCTCCGGCGATCCGTCCCGG
*
19778691 CGGTGCTCCGGCGATCCGTCCCG
1 TGGTGCTCCGGCGATCCGTCCCG
19778714 TCGATGATCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.04, C:0.39, G:0.37, T:0.20
Consensus pattern (24 bp):
TGGTGCTCCGGCGATCCGTCCCGG
Found at i:19778692 original size:13 final size:13
Alignment explanation
Indices: 19778650--19778718 Score: 56
Period size: 13 Copynumber: 5.6 Consensus size: 13
19778640 TGATGGTGCT
19778650 CCGGCGATCCGTC
1 CCGGCGATCCGTC
* * *
19778663 CCGGTGGTGC-T-
1 CCGGCGATCCGTC
19778674 CCGGCGATCCGTC
1 CCGGCGATCCGTC
* *
19778687 CCGGCGGTGC-T-
1 CCGGCGATCCGTC
19778698 CCGGCGATCCGTC
1 CCGGCGATCCGTC
*
19778711 CCGTCGAT
1 CCGGCGAT
19778719 GATCCGGTGA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
11 15 0.37
12 4 0.10
13 22 0.54
ACGTcount: A:0.06, C:0.41, G:0.35, T:0.19
Consensus pattern (13 bp):
CCGGCGATCCGTC
Found at i:19778724 original size:24 final size:24
Alignment explanation
Indices: 19778644--19778725 Score: 121
Period size: 24 Copynumber: 3.4 Consensus size: 24
19778634 AGTTTCTGAT
19778644 GGTGCTCCGGCGATCCGTCCCGGT-
1 GGTGCTCCGGCGATCCGTCCC-GTC
*
19778668 GGTGCTCCGGCGATCCGTCCCGGC
1 GGTGCTCCGGCGATCCGTCCCGTC
19778692 GGTGCTCCGGCGATCCGTCCCGTC
1 GGTGCTCCGGCGATCCGTCCCGTC
* *
19778716 GATGATCCGG
1 GGTGCTCCGG
19778726 TGAACCGTTC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 1 0.02
24 52 0.98
ACGTcount: A:0.06, C:0.38, G:0.37, T:0.20
Consensus pattern (24 bp):
GGTGCTCCGGCGATCCGTCCCGTC
Found at i:19778893 original size:85 final size:85
Alignment explanation
Indices: 19778744--19780442 Score: 1109
Period size: 85 Copynumber: 19.9 Consensus size: 85
19778734 TCCAGTAGCA
* * * *
19778744 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGTACCTTGGTGCTTGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
19778809 CCCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAAAC
* ** * * *
19778829 TCA-GCCCTTGGTCATGTAGGAGCCTCAGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAG
1 T-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAG
* * *
19778893 CCTCGGGCACCATCGCCAACC
65 CCTCGGACACCATCGGCAAAC
*
19778914 TAGGCTCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
** *
19778978 CCTCGGACACTGTCGG-TAAC
65 CCTCGGACACCATCGGCAAAC
* * * * *
19778998 TTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTACTTGGATGTGCGAGAA
1 -TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAG
* * *
19779063 CCTCGGGCACCATTGGCAACC
65 CCTCGGACACCATCGGCAAAC
* * * * ** ** *
19779084 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCTTGG-TCGTGCTGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* *
19779148 GCCTCGGGCACCATCGGCAAAA
64 GCCTCGGACACCATCGGCAAAC
* * * * * * *
19779170 TATGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
19779235 CTCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAAAC
* * * * * * *
19779255 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCTATCGGTACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* * *
19779320 CTCGGGCACCATCGCCAACC
66 CTCGGACACCATCGGCAAAC
*
19779340 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
** *
19779404 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAAAC
* * * *
19779425 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* * **
19779490 CTCGGGCACTATCGGCAGCC
66 CTCGGACACCATCGGCAAAC
* * * ** ** * **
19779510 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCATGCAAGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* * *
19779574 GCCTCGGGCGCCATCGGC-ACC
64 GCCTCGGACACCATCGGCAAAC
* ** * * * **
19779595 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGG-TCGTGCGGG
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGG
* * *
19779658 AGCCTCGGGCAGCATCGGC-ACC
63 AGCCTCGGACACCATCGGCAAAC
* *** * * ** * * ** *
19779680 TCGATGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGATACCTAGGCCCTTGG-TCGTGCAGG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTCGGTGCTTGGAT-GTGCGGG
* *
19779743 AGCCTC-GAGCACCATCTGC-ACC
63 AGCCTCGGA-CACCATCGGCAAAC
* ** * * * ** * * *
19779765 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTAGTTGTGCGAGA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGATGTGCGGGA
* * *
19779829 GGCTCGGGCACCATTGGCAAAC
64 GCCTCGGACACCATCGGCAAAC
* * ** ** **
19779851 TAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATATGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* * **
19779915 GCCTAGGCCACCATCGGC-CCC
64 GCCTCGGACACCATCGGCAAAC
** * * * * **
19779936 TAGGTACTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGG
* *
19779999 AGCCTCGGGCACCATCGGC-ACC
63 AGCCTCGGACACCATCGGCAAAC
* ** * * * * **
19780021 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGG
* *
19780084 AGCCTC-GAGCACCATCGAC-ACC
63 AGCCTCGGA-CACCATCGGCAAAC
* ** * * * * * ** *
19780106 TTGGTGCTTGGAT-GTCCGAGAACCTCAGGCACCATCGGCAACCTAGGCCCTTGG-TAGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGG
* *
19780169 AGGCTCGGGCACCATCGGCAAAC
63 AGCCTCGGACACCATCGGCAAAC
* * ** * ** *
19780192 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAAAATAGGCCCTTGG-TCGTGCGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* * *
19780256 GCCTCGGCCACCATCGTC-ACC
64 GCCTCGGACACCATCGGCAAAC
* * * * *
19780277 TTGGCCCTTGGTCGTACGGGAGCCTCGGACACCATTGGCACCTTGGTGGCTTGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTTGGATGTGCGGGAG
* * *
19780342 CCTCGGGCAGCATCGGC-ACC
65 CCTCGGACACCATCGGCAAAC
* ** * * * * * * *
19780362 TCGGTGGCTAGGAT-GTGTGGGAGCCTCGGACACTATCGGCAACTTGGTGCTTGGATGCGCGGGA
1 TAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGA
* *
19780426 GTCTCGGGCACCCATCG
64 GCCTCGGACA-CCATCG
19780443 ACACCTTGGT
Statistics
Matches: 1328, Mismatches: 250, Indels: 71
0.81 0.15 0.04
Matches are distributed among these distances:
84 15 0.01
85 1034 0.78
86 278 0.21
87 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGCAAAC
Found at i:19779662 original size:426 final size:425
Alignment explanation
Indices: 19778757--19780359 Score: 1545
Period size: 426 Copynumber: 3.8 Consensus size: 425
19778747 GCCCTTGGTC
* * ** *
19778757 GTGCGGGAGCCTCGGGCACCATCAG--TACCTTGGTGCTTGGATGTGCAGGAGCCCCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCAGCCAACCTAGGCCCTTGGATGTGCAGGAGCCTCGGACACCA
* * * * * **
19778820 TCGGCAAACTCAGCCCTTGGTCATGTAGGAGCCTCAGGCGCCATCGG-CACCTCGGTGCTTCGAT
66 TCGGC-AACTAAGCCCTTGGT-ATGCAGGAGCCTCAGGCACCATCGGATACCTAGGCCCTT-GAT
*
19778884 -GTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCTCTTGGTCGTGCGGGAGCCTCGGGCACCA
128 AGTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* ** ** * *
19778948 TCGGC-ACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGTAACTTAGGCCCTTGGTC
193 TCGGCAACCTAGGCCCT-TGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* *
19779012 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTACTTGGATGTGCGAGAACCTCGGGCACCATT
257 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATC
*
19779077 GGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCTTGGTCGT
322 GGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGT
* ** ** ** *
19779142 GCTGGAGCCTCGGGCACCATCGGCAAAATATGCCCTTGGT
387 GCAGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGAT
* * * ** *
19779182 CGTGCAGGAGCCTCGGCCACCATCGGCC--CCTAGGTGCTGGGATGTGCAGGAGCCTCGGACACC
1 -GTGCGGGAGCCTCGGGCACCATCAGCCAACCTAGGCCCTTGGATGTGCAGGAGCCTCGGACACC
* * * * **
19779245 ATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCTATCGG-TACCTCGGTGCTTCGA
65 ATCGGC-AACTAAGCCCTTGGT-ATGCAGGAGCCTCAGGCACCATCGGATACCTAGGCCCTT-GA
*
19779309 T-GTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACC
127 TAGTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* ** **
19779373 ATCGGC-ACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGT
192 ATCGGCAACCTAGGCCCT-TGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
*
19779437 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACTAT
256 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCAT
* *
19779502 CGGCAGCCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCA
321 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCG
* *
19779567 TGCAAGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGAT
386 TGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCTT-GAT
* * *
19779608 GTGCGGGAGCCTCGGGCACCATC-GCCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAGC
1 GTGCGGGAGCCTCGGGCACCATCAGCCAACCTAGGCCCTTGGAT-GTGCAGGAGCCTCGGACACC
* * * * * **
19779671 ATCGGCACCTCGATG--CTATGATGTGCGGGAGCCTC-GGACACTGTCGGATACCTAGGCCCTTG
65 ATCGGCAACT--AAGCCCT-TGGTATGCAGGAGCCTCAGG-CACCATCGGATACCTAGGCCCTTG
* * * * * ** * *
19779733 GTCGTGCAGGAGCCTCGAGCACCATCTG-C-ACCTTGGTGCTTGGAT-GTGCGAGAACCTCGGGC
126 ATAGTGCGGGAGCCTCGGGCACCATC-GCCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGC
* * * * * * *
19779795 ACCATCGGCAACCTAGGCCCTTAGTTGTGCGAGAGGCTCGGGCACCATTGGCAAACTAAGCCCTT
189 ACCATCGGCAACCTAGGCCCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * ** ** * * * *
19779860 GGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAT-GCCCTTGG-TCGTGCGGGAGCCTAGGC
253 GGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT-TGGTGCTTGGAT-GTGCGAGAACCTCGGG
* ** * * * * *
19779923 CACCATCGGC-CCCTAGGTACTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCC
315 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCC
*
19779986 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGAT
379 TTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGAT
* * * *
19780034 GTGCGGGAGCCTCGGACACTATC-GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GAGCAC
1 GTGCGGGAGCCTCGGGCACCATCAGCCAACCTAGGCCCTTGGAT-GTGCAGGAGCCTCGGA-CAC
* * ** ** * *
19780096 CATCGACACCTTGGTGCTTGG-ATGTCCGAGAACCTCAGGCACCATCGGCA-ACCTAGGCCCTTG
64 CATCGGCAACTAAGCCCTTGGTATG-CAG-GAGCCTCAGGCACCATCGG-ATACCTAGGCCCTTG
* * * * * *
19780159 GTAGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
126 ATAGTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * * *
19780224 CATCAGCAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGTC-ACCTTGGCCCTTGG
191 CATCGGCAACCTAGGCCCTTGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
* * * * *
19780288 TCGTACGGGAGCCTCG-GACACCATTGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGGGCAG
255 TCGTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGT-GCTTGGATGTGCGAGAACCTCGGGCAC
19780352 CATCGGCA
318 CATCGGCA
19780360 CCTCGGTGGC
Statistics
Matches: 998, Mismatches: 142, Indels: 73
0.82 0.12 0.06
Matches are distributed among these distances:
424 9 0.01
425 98 0.10
426 789 0.79
427 101 0.10
428 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (425 bp):
GTGCGGGAGCCTCGGGCACCATCAGCCAACCTAGGCCCTTGGATGTGCAGGAGCCTCGGACACCA
TCGGCAACTAAGCCCTTGGTATGCAGGAGCCTCAGGCACCATCGGATACCTAGGCCCTTGATAGT
GCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GCAACCTAGGCCCTTGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC
GGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAG
GAGCCTCGGGCACCATCGGCACCTCGGTGCTTGAT
Found at i:19780319 original size:298 final size:298
Alignment explanation
Indices: 19778744--19780362 Score: 1310
Period size: 298 Copynumber: 5.4 Consensus size: 298
19778734 TCCAGTAGCA
* * * ** *
19778744 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGTACCTTGGTGCT-TGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGCCCTAT-GATGTGCGGGAG
* * * * ** * *
19778808 CCCCGGACACCATCGGCAAACTCA-GCCCTTGGTCATGTAGGAGCCTCAG-GCGCCATCGGCACC
65 CCTCGGACACCATCGGC-ACCT-AGGCCCTTGATCGTGCGGGAGCCTCGGAGCACCATCGGCACC
* ** * * * * * *
19778871 TCGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCTCTTGG-TCGTGCGGGA
128 TAGGCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGAGA
* ** ** * * * * ** *
19778935 GCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGG-TAA
191 GCCTCGGGCACCATCGGCAAACTAAGCCCT-TGGTCATGCAGGAGCCTCGGGCACCATCGGCAAA
* * *
19778997 CTTAGGCCCTT-GGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
255 C-TAGGCCCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGCCAACC
* ** * * * * * *
19779041 TTGGTACTTGGAT-GTGCGAGAACCTCGGGCACCATTGGCAACCTAGGCCCT-TGGTCGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGCCCTATGAT-GTGCGGG
* * * * * * *
19779104 AGGCTCGGGCACAATCGGCAAACTAAGCCCTTGGTCGTGCTGGAGCCTCGG-GCACCATCGGCAA
63 AGCCTCGGACACCATCGGC-ACCTAGGCCCTTGATCGTGCGGGAGCCTCGGAGCACCATCGGC-A
** * * * * ** *
19779168 AATATGCCCTTGG-TCGTGC-AGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGC-A
126 CCTAGGCCCTTGGAT-GTGCGA-GAACCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGA
* * * *
19779230 GGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCTATCGG-T
189 -GAGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCA
* * **
19779294 ACCTCGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACC
253 AACTAGGCCCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACC
* **
19779340 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGCCCTATGATGTGCGGGAGC
** * *
19779405 CTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGCACCTT
66 CTCGGACACCATCGGC-ACCTAGGCCCTTGATCGTGCGGGAGCCTCGGAGCACCATCGGCACCTA
** * *
19779469 GGTGCTTGGATGTGCGAGAACCTCGGGCACTATCGGCAGCCTAGGCCCTTGG-TCGTGCGAGAGG
130 GGCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGCA-CCTAGGCCCTTGGAT-GTGCGAGAGC
* * * *
19779533 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCATGCAAGAGCCTCGGGCGCCATCGGC-ACCTC
193 CTCGGGCACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCAAACTA
**
19779597 GGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACC
258 GGCCCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACC
* ***
19779638 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAGCATCGGCACCTCGATGCTATGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGCCCTATGATGTGCGGGAGC
** * * * * *
19779703 CTCGGACACTGTCGGATACCTAGGCCCTTGGTCGTGCAGGAGCCTC-GAGCACCATCTGCACCTT
66 CTCGGACACCATCGG-CACCTAGGCCCTTGATCGTGCGGGAGCCTCGGAGCACCATCGGCACCTA
** * * *
19779767 GGTGCTTGGATGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTAGTTGTGCGAGAGGC
130 GGCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGC-ACCTAGGCCCTTGGATGTGCGAGAGCC
* * * *
19779832 TCGGGCACCATTGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAT
194 TCGGGCACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCAAACTAG
* * *
19779897 GCCCTT-GGTCGTGCGGGAGCCTAGGCCACCATCGGCC--CC
259 GCCCTTCGAT-GTGCGGGAGCCTCGGGCACCATC-GCCAACC
** * * * * *
19779936 TAGGTACTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT-TGGTCGTGCGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGCCCTATGAT-GTGCGGG
* * ** *
19779999 AGCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGA-CACTATCGGCAA
63 AGCCTCGGACACCATCGGCACCTAGGCCCT-TGATCGTGCGGGAGCCTCGGAGCACCATCGGC-A
* * * * * ** *
19780062 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTCCGAG
126 CCTAGGCCCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGAG
* * * * *
19780126 AACCTCAGGCACCATCGGCAACCTAGGCCCTTGGT-AGTGC-GAGAGGCTCGGGCACCATCGGCA
190 AGCCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCA-TGCAG-GAGCCTCGGGCACCATCGGCA
* * **
19780189 AACTAAGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCAG-CAAAA
253 AACTAGGCCCTTCGAT-GTGCGGGAGCCTCGGGCACCATC-GCCAACC
* * * * * *
19780235 TAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGTCACCTTGGCCCT-TGGTCGTACGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGCCCTATGAT-GTGCGGGAG
* * ** *
19780299 CCTCGGACACCATTGGCACCTTGGTGGCTTGGAT-GTGCGGGAGCCTCGG-GCAGCATCGGCACC
65 CCTCGGACACCATCGGCACCTAGG-CCCTT-GATCGTGCGGGAGCCTCGGAGCACCATCGGCACC
19780362 T
128 T
19780363 CGGTGGCTAG
Statistics
Matches: 1100, Mismatches: 179, Indels: 85
0.81 0.13 0.06
Matches are distributed among these distances:
297 65 0.06
298 778 0.71
299 254 0.23
300 3 0.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (298 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGCCCTATGATGTGCGGGAGC
CTCGGACACCATCGGCACCTAGGCCCTTGATCGTGCGGGAGCCTCGGAGCACCATCGGCACCTAG
GCCCTTGGATGTGCGAGAACCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGAGAGCCTC
GGGCACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCACCATCGGCAAACTAGGC
CCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACC
Found at i:19780426 original size:341 final size:339
Alignment explanation
Indices: 19778749--19780452 Score: 1500
Period size: 341 Copynumber: 5.0 Consensus size: 339
19778739 TAGCATAGGC
* * * * * ** *
19778749 CCTTGGTCGTGCGGGAGCCTCGGGCACCATCAG-TACCTTGGTGCTTGG-ATGTGC-AGGAGCCC
1 CCTTGGTCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTA-GTGCGA-GAGCCT
* * * * * * ** *
19778811 CGGACACCATCGGCAAACTCAGCCCTTGGTCATGTAGGAGCCTCAGGCGCCATCGGC-ACCTCGG
64 CGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAGG
** * * * *
19778875 TGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCTCTTGGTCGTGCGGGAGCCT
129 CCCTT-GGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCT
* * ** * * *
19778939 CGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACACTGTCGGTAACTTAGG
192 CGGGCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTCGG
** * * * * * * *
19779003 CCCTTGG-TCGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTACTTGGATGTGCGAGAACCT
255 TGCTAGGAT-GTGCGGGAGCCTCGGA-CACTATCGGCAACTAGGTCCTTGGATGTGCGGGAGCCT
* * * * *
19779066 CGGGCACCATTGGCAACCTAGGC
318 CGAGCACCATCGAC-ACCTTGGT
** * * * *
19779089 CCTTGGTCGTGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCTTGGTCGTGCTG-GAGCCTC
1 CCTTGGTCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTAGTGC-GAGAGCCTC
* * * *** *
19779153 GGGCACCATCGGCAAAATATGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGC-CCCTAGGT
65 GGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAGGC
* * * * * * * *
19779217 GCTGGGAT-GTGCAGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTC
130 CCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * * * * * * **
19779281 GGGCGCTATCGGTACCTCGGTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCC
193 GGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTG
* * * * * * *
19779346 CTTGG-TCATGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCG
257 CTAGGAT-GTGCGGGAGCCTCGGACACTATCGGCAACTAGGTCCT-TGGATGTGCGGGAGCCTCG
** * * *
19779409 -GACACTGTCGGCAACCTAGGC
320 AG-CACCATCGAC-ACCTTGGT
* * * * ** *
19779430 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGG-ATGTGCGAGAACCTC
1 CCTTGGTCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTA-GTGCGAGAGCCTC
* ** * * * *
19779493 GGGCACTATCGGCAGCCTAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGCAAACTAAG
65 GGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATCGGCAAAATAGG
* ** * * * ** *
19779557 CCCTTGGTCATGCAAGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGAT-GTGCGGGAGCCTC
129 CCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTT-GGTCGTGCGGGAGCCTC
* ** * *
19779621 GGGCACCATCGCCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAGCATCGGCACCTCGAT
193 GGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT
* * * *
19779685 GCTATGATGTGCGGGAGCCTCGGACACTGTCGG-ATACCTAGGCCCTTGG-TCGTGCAGGAGCCT
256 GCTAGGATGTGCGGGAGCCTCGGACACTATCGGCA-A-CTAGGTCCTTGGAT-GTGCGGGAGCCT
19779748 CGAGCACCATCTG-CACCTTGGT
318 CGAGCACCATC-GACACCTTGGT
* * * *
19779770 GCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTAGTTGTGCGAGAGGCTC
1 CCTTGG-TCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTAGTGCGAGAGCCTC
* *
19779834 GGGCACCATTGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATATGC
65 GGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAGGC
* * ** *
19779899 CCTTGGTCGTGCGGGAGCCTAGGCCACCATCGGCCCCTAGGTACTGGGAT-GTGCGGGAGCCTCG
130 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* * **
19779963 GACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTG
194 GGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTG
* *
19780027 CTATGATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
257 CTAGGATGTGCGGGAGCCTCGGACACTATCGGCAA-CTAGGTCCTTGGAT-GTGCGGGAGCCTCG
19780091 AGCACCATCGACACCTTGGT
320 AGCACCATCGACACCTTGGT
* * * *
19780111 GCTTGGAT-GTCCGAGAACCTCAGGCACCATCGGCAACCTAGGCCCTTGGTAGTGCGAGAGGCTC
1 CCTTGG-TCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTAGTGCGAGAGCCTC
* *
19780175 GGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAAAATAGGC
65 GGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAGGC
* * * *
19780240 CCTTGGTCGTGCGGGGGCCTCGGCCACCATCGTCACCTTGGCCCTTGGTCGTACGGGAGCCTCGG
130 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
19780305 ACACCATTGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGC
195 GCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GC
* * * * * *
19780370 TAGGATGTGTGGGAGCCTCGGACACTATCGGCAACTTGGTGCTTGGATGCGCGGGAGTCTCGGGC
258 TAGGATGTGCGGGAGCCTCGGACACTATCGGCAACTAGGTCCTTGGATGTGCGGGAGCCTCGAGC
19780435 ACCCATCGACACCTTGGT
323 A-CCATCGACACCTTGGT
19780453 ACCTGGGATA
Statistics
Matches: 1142, Mismatches: 184, Indels: 74
0.82 0.13 0.05
Matches are distributed among these distances:
339 3 0.00
340 200 0.18
341 881 0.77
342 58 0.05
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (339 bp):
CCTTGGTCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTAGTGCGAGAGCCTCG
GGCACCATCGGCAAACTAAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAAAATAGGCC
CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAG
GATGTGCGGGAGCCTCGGACACTATCGGCAACTAGGTCCTTGGATGTGCGGGAGCCTCGAGCACC
ATCGACACCTTGGT
Found at i:19787811 original size:42 final size:42
Alignment explanation
Indices: 19787706--19788041 Score: 317
Period size: 42 Copynumber: 7.9 Consensus size: 42
19787696 AGAGCCTCCA
* *
19787706 GCACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGACACCATCG
1 GCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCG
* *
19787749 GTAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
1 G-CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* *
19787792 GCACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCATCG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCG
* * ** * *
19787834 GCTAACTAGGCCCTTGGTTGTG-GGAAGCCTCGGAG-ACCATCG
1 GC-ACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCG
* * **
19787876 GCACCTCGGTGCTAT-GATGTTCGGGAGCCTCG-GACACTGTCG
1 GCACCTTGGTGCT-TGGATGTGCGGGAGCCTCGAG-CACCATCG
* ** *
19787918 GCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGAGCACCATCG
1 GC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCG
*
19787961 GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCG
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
19788003 GCACCTTGGTGCATGGATGAGCGGGAGCCTTGAGCACCA
1 GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCA
19788042 AAGCTAAAGT
Statistics
Matches: 237, Mismatches: 41, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
40 1 0.00
41 13 0.05
42 139 0.59
43 73 0.31
44 11 0.05
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.21
Consensus pattern (42 bp):
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:19787895 original size:84 final size:86
Alignment explanation
Indices: 19787706--19788005 Score: 355
Period size: 85 Copynumber: 3.5 Consensus size: 86
19787696 AGAGCCTCCA
* * * * * *** *
19787706 GCACCTTGGTGGCT-CGGATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTGGATGT
1 GCACCTTGGT-GCTATGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTTGT
*
19787770 GCGGGAGCCTCGAGCACCATCG
65 GCGGAAGCCTCGAGCACCATCG
*
19787792 GCACCTTGGTGC-ATGGATGTGCGGGAGCATCGGACACCATCGGCTAA-CTAGGCCCTTGGTTGT
1 GCACCTTGGTGCTATGGATGTGCGGGAGCCTCGGACACCATCGGC-AACCTAGGCCCTTGGTTGT
19787855 G-GGAAGCCTCGGAG-ACCATCG
65 GCGGAAGCCTC-GAGCACCATCG
* * ** *
19787876 GCACCTCGGTGCTAT-GATGTTCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTG
1 GCACCTTGGTGCTATGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTTGTG
19787940 CGGAAGCCTCGAGCACCATCG
66 CGGAAGCCTCGAGCACCATCG
*
19787961 GCACCTTGGTGCT-TGGATGTGCGAGAGCCTC-GAGCACCATCGGCA
1 GCACCTTGGTGCTATGGATGTGCGGGAGCCTCGGA-CACCATCGGCA
19788006 CCTTGGTGCA
Statistics
Matches: 183, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
83 2 0.01
84 73 0.40
85 96 0.52
86 12 0.07
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (86 bp):
GCACCTTGGTGCTATGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTTGTG
CGGAAGCCTCGAGCACCATCG
Found at i:19793411 original size:24 final size:24
Alignment explanation
Indices: 19793384--19793456 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
19793374 CCGGTTAGGT
*
19793384 TCCCGGCGGTGCTCCGGCGATCCG
1 TCCCGGCGGTGCTCTGGCGATCCG
**
19793408 TCCCGGCGGTGCTCTGGTAATCCG
1 TCCCGGCGGTGCTCTGGCGATCCG
* *
19793432 TCCCGTCGGTGCTCTGGCGAACCG
1 TCCCGGCGGTGCTCTGGCGATCCG
19793456 T
1 T
19793457 TCTGATAGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.07, C:0.37, G:0.34, T:0.22
Consensus pattern (24 bp):
TCCCGGCGGTGCTCTGGCGATCCG
Found at i:19793616 original size:85 final size:87
Alignment explanation
Indices: 19793470--19795042 Score: 858
Period size: 85 Copynumber: 18.4 Consensus size: 87
19793460 GATAGCATAG
* * * ** *
19793470 GCCCTTGGTCGTGCGGGAGCCTCGGTCACCATCGGC-ACCTTGGTGCTAGGAT-GTGCAGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
*
19793533 CCGGACACCATCGGCAAACTAA
66 TCGGACACCATCGGCAAACTAA
* * * *
19793555 GCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTCCTTCGAT-GTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* * *
19793618 TCGGGCACTATC-GCAAACCTAG
66 TCGGACACCATCGGCAAA-CTAA
* * ** * *
19793640 GCCCTCGGTCGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* * **
19793704 TC-GAGCACTATCGGC-ACCTTG
66 TCGGA-CACCATCGGCAAACTAA
** * * * * * *
19793725 GTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCCTCGGTCGTGCGAGAGG
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* *
19793788 CTCGGGCACCATCGGTAAACTAA
65 CTCGGACACCATCGGCAAACTAA
* ** * * *
19793811 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATATGCCCTT-GGTCGTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* ** *
19793875 TCGGCCACCATCGGC-CCCTAG
66 TCGGACACCATCGGCAAACTAA
** * * ** * * * * * *
19793896 GTGCTGGGAT-GTGTGGGAGCCTCGAACACCATCGGCAAACTAAGCCCTT-GGTCATGCAGGAGC
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* * * **
19793959 CTCGGGCGCCATCGGC-ACCTCG
65 CTCGGACACCATCGGCAAACTAA
** * * * * *
19793981 GTGCTTCGAT-GTGTGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTT-GGTCGTGCGGGAGC
1 GCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* * **
19794044 CTCGGGCACCATCGGC-ACCTCG
65 CTCGGACACCATCGGCAAACTAA
** * * * ** * *
19794066 GTGCTATGAT-GTACGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGC
1 GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* * **
19794129 CTC-GAGCACCATCGAC-ACCTTG
65 CTCGGA-CACCATCGGCAAACTAA
** * * * *
19794151 GTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CTCTT-GGTCGTGCGAGAG
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTC-CTTCGATCGTGCGGGAG
* * *
19794213 GCTCGGGCACCATCAGCAAACTAA
64 CCTCGGACACCATCGGCAAACTAA
* ** * * *
19794237 GCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATATGCCCTT-GGTCGTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* ** *
19794301 TCGGCCACCATCGGC-CCCTAG
66 TCGGACACCATCGGCAAACTAA
** * * * * *
19794322 GTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTT-GGTCGTGCGGGAGC
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* **
19794385 CTC-GAGCACCATC-G-ACACTTTG
65 CTCGGA-CACCATCGGCAAAC-TAA
** * * * * *
19794407 GTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGG
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGC
* *
19794470 CTCGGGCACCATCGACAAACTAA
65 CTCGGACACCATCGGCAAACTAA
* * ** ** * * *
19794493 GCCCTTGGTCGTGCAGGAGCCTCTGGCACCATCAACAAAATAGGCCCTT-GGTCGTGCGGGGGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* * **
19794557 TCGGCCACCATCGGC-ACCTCG
66 TCGGACACCATCGGCAAACTAA
* * *
19794578 GCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-ACCTTGGTGGC-TCGAAT-GTGCGGGAG
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-CCTTCG-ATCGTGCGGGAG
* * * **
19794640 CCTCGGGCAGCATCGGC-ACCTCT
64 CCTCGGACACCATCGGCAAACTAA
** * * * * * *
19794663 GTGGCTAGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACTTA-GTGCTTGGAT-GTGCGGGAA
1 G-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAG
* * *
19794725 CCTCGGGCACCATCGGCAACCTAG
64 CCTCGGACACCATCGGCAAACTAA
* * * * * * * *
19794749 GCCCTTGGTCGTGCGAGTGGCTCGGGCACCATCGGCAAACTAAGCCCTT-GGTCGTGCGGGAGGC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* * *
19794813 TCGGGCACCATCGGCAAAATAG
66 TCGGACACCATCGGCAAACTAA
* * * * * *
19794835 GCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTT-GGTCGTGCGGGAGCC
1 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
* * **
19794898 TCAGG-CACCACCGGC-ACCTTG
66 TC-GGACACCATCGGCAAACTAA
** * ** * * **
19794919 GTGGCTCGGAT-GTGCGGGAGCCTCGGGCAGTATCGGC-ACCTCGGTGGCTAGGAT-GTGCGGGA
1 G-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-CCTTCGATCGTGCGGGA
* **
19794981 GCCTCGGACACCATCAGC-AACTTG
63 GCCTCGGACACCATCGGCAAACTAA
**
19795005 GTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 GCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
19795043 CCTTGGTACC
Statistics
Matches: 1208, Mismatches: 232, Indels: 94
0.79 0.15 0.06
Matches are distributed among these distances:
84 26 0.02
85 793 0.66
86 374 0.31
87 15 0.01
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (87 bp):
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCTTCGATCGTGCGGGAGCC
TCGGACACCATCGGCAAACTAA
Found at i:19793717 original size:128 final size:129
Alignment explanation
Indices: 19793467--19795042 Score: 1270
Period size: 128 Copynumber: 12.3 Consensus size: 129
19793457 TCTGATAGCA
* * ** * *
19793467 TAGGCCCTTGGTCGTGCGGGAGCCTCGGTCACCATCGGC--ACCTTGGTGCTAGGAT-GTGCAGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGG-TCGTGCGGG
* * * * * * *
19793529 AGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACC
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * *
19793594 TCGGTCCTTCGAT-GTGCGGGAGCCTCGGGCACTATC-GCAAACCTAGGCCCTCGGTCGTGCGGG
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGG
* ** * *
19793657 AGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACTATCGGCACC
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * * *
19793722 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGC-AACCTAGGCCCTCGGTCGTGCGAG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGG
* * * * * *
19793785 AGGCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAA
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CAC
*
19793850 A
129 C
* * * ** * *
19793851 TATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC--CCCTAGGTGCTGGGAT-GTGTGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGG-TCGTGCGGG
** * * * * *
19793913 AGCCTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACC
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * *
19793978 TCGGTGCTTCGAT-GTGTGGGAGCCTCGGGCACCATC-GCCAACCTAGGCCCTTGGTCGTGCGGG
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGG
* ** * * * **
19794041 AGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTACGGGAGCCTCGGACACTGTCGGCAA
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
19794104 CC
128 CC
* * * ** *
19794106 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC-G-ACACCTTGGTGCTTGGAT-GTGCGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGG-TCGTGCGGG
* * * * * *
19794168 AACCTCGGGCACCATCGGCAACCTAGGCTCTTGGTCGTGCGAGAGGCTCGGGCACCATCAGCAAA
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
19794233 C
129 C
* * * *
19794234 TAAGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA-ATATGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGGA
* * ** * * *
19794298 GCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAA
66 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-AC
19794361 C
129 C
* * * * **
19794362 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC-G-ACACTTTGGTGCTTGGAT-GTGCGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGG-TCGTGCGGG
* * * * *
19794424 AACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAAA
65 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
19794489 C
129 C
* * * ** * *
19794490 TAAGCCCTTGGTCGTGCAGGAGCCTCTGGCACCATCAACAAA-ATAGGCCCTTGGTCGTGCGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGGA
* * *
19794554 GCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGCACC
66 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* ** * * * * * *
19794617 TTGGTGGCTCGAAT-GTGCGGGAGCCTCGGGCAGCATCGGC--ACCTCTGTG-GCTAGGAT-GTG
1 TAGG-CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCT-AG-GCCCTTGG-TCGTG
* * *
19794677 CGGGAGCCTCGGACACCATCGGCAACTTAGTG--CTTGGAT-GTGCGGGAACCTCGGGCACCATC
61 CGGGAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC
19794739 GGCAACC
124 GGC-ACC
* * * *
19794746 TAGGCCCTTGGTCGTGCGAGTGGCTCGGGCACCATCGGCAAA-CTAAGCCCTTGGTCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGGA
* ** * * *
19794810 GGCTCGGGCACCATCGGCAAAATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGCACC
66 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * ** *
19794874 TCGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCACCGGC--ACCTTGGTGGCTCGGAT-GTGCGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGG-CCCTTGG-TCGTGCGG
** * ** * * *
19794936 GAGCCTCGGGCAGTATCGGC-ACCTCGGTGGCTAGGAT-GTGCGGGAGCCTCGGACACCATCAGC
64 GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
*
19794999 AAC
127 ACC
* **
19795002 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
19795043 CCTTGGTACC
Statistics
Matches: 1151, Mismatches: 242, Indels: 109
0.77 0.16 0.07
Matches are distributed among these distances:
126 8 0.01
127 172 0.15
128 815 0.71
129 150 0.13
130 6 0.01
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (129 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACCTAGGCCCTTGGTCGTGCGGGA
GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
Found at i:19794006 original size:256 final size:254
Alignment explanation
Indices: 19793467--19795042 Score: 1427
Period size: 256 Copynumber: 6.2 Consensus size: 254
19793457 TCTGATAGCA
* * * * ** * *
19793467 TAGGCCCTTGGTCGTGCGGGAGCCTCGGTCACCATCGGC-ACCTTGGTGCTAGGAT-GTGCAGGA
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGA
* * * * * * *
19793530 GCCCCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACC
65 GGCTCGGGCACCATCGG-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * **
19793594 TCGGTCCTTCGAT-GTGCGGGAGCCTCGGGCACTATC-GCAAACCTAGGCCCTCGG-TCGTGCGG
129 TAGGCCCTT-GGTCGTGCGGGAGCCTC-GGCACCATCGGC--ACCTTGGTGCTCGGAT-GTGCGG
** * *
19793656 GAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACTATCGGC-A
189 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAA
19793720 CC
253 CC
* * * * * * *
19793722 TTGGTGCTTGGAT-GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCCTCGGTCGTGCGAGA
1 TAGGCGCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * **
19793786 GGCTCGGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
65 GGCTCGGGCACCATCGG-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
19793851 TATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGTGGGAGC
129 TAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
* * * * *
19793916 CTCGAACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACC
193 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACC
* * * * * *
19793978 TCGGTGCTTCGAT-GTGTGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCGCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGA
* * * * ** * * * **
19794042 GCCTCGGGCACCATCGGCACCTCGGTGCTATGAT-GTACGGGAGCCTCGGACACTGTCGGCAACC
65 GGCTCGGGCACCATCGGAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
19794106 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGAGAAC
129 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGC
* * * * *
19794171 CTCGGGCACCATCGGCAACCTAGGCTCTTGGTCGTGCGAGAGGCTCGGGCACCATCAGCAAAC
193 CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAACC
* * *
19794234 TAAGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATATGCCCTTGGTCGTGCGGGAG
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * *** ** * * *
19794299 CCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGCAAACT
66 GCTCGGGCACCATCGGAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* * * *
19794363 AGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACTTTGGTGCTTGGATGTGCGGGAACC
130 AGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCC
* * * *
19794428 TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGACAAAC
194 TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAACC
* * * * ** *
19794490 TAAGCCCTTGGTCGTGCAGGAGCCTCTGGCACCATCAACAAAATAGGCCCTTGGTCGTGCGGG-G
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * * * *
19794554 GCCTCGGCCACCATCGGCACCTCGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-ACCT
66 G-CTCGGGCACCATCGGAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* ** * * * *
19794618 TGGTGGCTCGAAT-GTGCGGGAGCCTCGGGCAGCATCGGCACCTCT-GTGGCTAGGATGTGCGGG
130 AGG-CCCTTG-GTCGTGCGGGAGCCTC-GGCACCATCGGCACCT-TGGT-GCTCGGATGTGCGGG
* *
19794681 AGCCTCGGACACCATCGGCAACTTAGTG--CTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCA
190 AGCCTCGGACACCATCGGCAACCTAG-GCCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGGCA
19794743 ACC
252 ACC
* * * * *
19794746 TAGGCCCTTGGTCGTGCGAGTGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
* * * *
19794811 GCTCGGGCACCATCGGCAAAATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCT
66 GCTCGGGCACCATCGG-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* *
19794875 CGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCACCGGCACCTTGGTGGCTCGGATGTGCGGGAGC
130 AGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGC
* ** * ** * * *
19794940 CTCGGGCAGTATCGGC-ACCTCGGTGGCTAGGAT-GTGCGGGAGCCTCGGACACCATCAGCAA-C
193 CTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGC-GGAGCCTCGGGCACCATCGGCAACC
* *
19795002 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCA
1 TAGGCGCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCA
19795043 CCTTGGTACC
Statistics
Matches: 1107, Mismatches: 180, Indels: 66
0.82 0.13 0.05
Matches are distributed among these distances:
254 2 0.00
255 180 0.16
256 768 0.69
257 154 0.14
258 3 0.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (254 bp):
TAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAG
GCTCGGGCACCATCGGAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTA
GGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC
GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACC
Found at i:19794942 original size:43 final size:43
Alignment explanation
Indices: 19793480--19795065 Score: 566
Period size: 43 Copynumber: 37.2 Consensus size: 43
19793470 GCCCTTGGTC
*
19793480 GTGCGGGAGCCTCGGTCACCATCGGCACCTTGGT-GCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * * ** ** *
19793522 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * * * **
19793564 CATGCAGGAGCCTCGGGCGCCATCGGCACCTCGGT-CCTTCGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * ** *
19793607 GTGCGGGAGCCTCGGGCACTATC-GCAAACCTAGG-CCCTCGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC--ACCTTGGTGGCTAGGAT
* ** * ** *
19793649 CGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * *
19793692 CGTGCGGGAGCCTCGAGCACTATCGGCACCTTGGT-GCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * ** *
19793735 GTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCCTCGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * * ** ** *
19793777 CGTGCGAGAGGCTCGGGCACCATCGGTAAACTAAG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGGCTAGGAT
* *** * * *
19793820 CGTGCGGGAGCCTCGGGCACCATCGGTAAAAT-ATGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-GCTAGGAT
* * * *
19793863 CGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGT-GCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* ** * ** ** *
19793906 GTGTGGGAGCCTCGAACACCATCGGCAAACTAAG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * * **
19793948 CATGCAGGAGCCTCGGGCGCCATCGGCACCTCGGT-GCTTCGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * ** *
19793991 GTGTGGGAGCCTCGGGCACCATCGCCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* *
19794033 CGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTATGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * ** * ** *
19794076 GTACGGGAGCCTCGGACACTGTCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * *
19794118 CGTGCGGGAGCCTCGAGCACCATCGACACCTTGGT-GCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * *
19794161 GTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCT--CTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGG-TGGCTAGGAT
* * * * ** * *
19794203 CGTGCGAGAGGCTCGGGCACCATCAGCAAACTAAG-CGCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
*** * * *
19794246 CGTGCGGGAGCCTCGGGCACCATCGGCAAAAT-ATGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-GCTAGGAT
* * * *
19794289 CGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGT-GCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * ** *
19794332 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * *
19794374 CGTGCGGGAGCCTCGAGCACCATCGACACTTTGGT-GCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * ** *
19794417 GTGCGGGAACCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * * ** ** *
19794459 CGTGCGAGAGGCTCGGGCACCATCGACAAACTAAG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * ** ** * ** *
19794502 CGTGCAGGAGCCTCTGGCACCATCAACAAAATAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * ** *
19794545 CGTGCGGGGGCCTCGGCCACCATCGGCACCTCGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * *
19794587 CGTGCGGGAGGCTCGGGCACCATCGGCACCTTGGTGGCTCGAAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
*
19794631 GTGCGGGAGCCTCGGGCAGCATCGGCACCTCT-GTGGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCT-TGGTGGCTAGGAT
* * * *
19794674 GTGCGGGAGCCTCGGACACCATCGGCAACTTAGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * ** *
19794716 GTGCGGGAACCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* * * * ** ** *
19794758 CGTGCGAGTGGCTCGGGCACCATCGGCAAACTAAG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTAGGAT
* *** * * *
19794801 CGTGCGGGAGGCTCGGGCACCATCGGCAAAATAG-GCCATTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGC-TAGGAT
* * * ** *
19794844 CGTGCGGGGGCCTCGGCCACCATCGGCACCTCGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * *
19794886 CGTGCGGGAGCCTCAGGCACCACCGGCACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
** *
19794930 GTGCGGGAGCCTCGGGCAGTATCGGCACCTCGGTGGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
* * * *
19794973 GTGCGGGAGCCTCGGACACCATCAGCAACTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
** *
19795015 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTACCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTTGGTGGCTAGGAT
19795059 GTGCGGG
1 GTGCGGG
19795066 CTAAAGAAGA
Statistics
Matches: 1232, Mismatches: 248, Indels: 126
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.00
42 417 0.34
43 792 0.64
44 21 0.02
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGGAT
Found at i:19801108 original size:24 final size:24
Alignment explanation
Indices: 19801080--19801132 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
19801070 CCGGTTAGGT
19801080 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCGGTGCTCCGGTGATCCG
19801104 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCGGTGCTCCGGTGATCCG
19801128 TCCCG
1 TCCCG
19801133 TTGATGCTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.04, C:0.40, G:0.36, T:0.21
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGTGATCCG
Found at i:19801140 original size:24 final size:24
Alignment explanation
Indices: 19801080--19801143 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
19801070 CCGGTTAGGT
*
19801080 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCGATGCTCCGGTGATCCG
*
19801104 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCCGGCGATGCTCCGGTGATCCG
**
19801128 TCCCGTTGATGCTCCG
1 TCCCGGCGATGCTCCG
19801144 ACGAACCGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.05, C:0.38, G:0.34, T:0.23
Consensus pattern (24 bp):
TCCCGGCGATGCTCCGGTGATCCG
Found at i:19801240 original size:42 final size:42
Alignment explanation
Indices: 19801177--19801506 Score: 299
Period size: 42 Copynumber: 7.8 Consensus size: 42
19801167 CCCTTGGTCC
* *
19801177 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGATG
1 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATG
* * * * * ** *
19801219 TGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGG-TCA
1 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-G
* * * * *
19801262 TGCAGGAACCTCGGGCGCCATCGGCACCTCGGTGCTTCGATG
1 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATG
* **
19801304 TGCGGGAGCCTCGGGCACCATCGCCAACCTAGGCCCTTGG-TCG
1 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-G
* *
19801347 TGTGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATG
1 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGGATG
* ** ** *
19801389 TGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCATGG-TCG
1 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-G
* *
19801432 TGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATG
1 TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATG
*
19801474 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGG
1 TGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
19801507 CCCTTGGTCG
Statistics
Matches: 223, Mismatches: 53, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
42 120 0.54
43 103 0.46
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
TGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATG
Found at i:19801312 original size:85 final size:85
Alignment explanation
Indices: 19801163--19801519 Score: 500
Period size: 85 Copynumber: 4.2 Consensus size: 85
19801153 TCCAGTAGCA
* * * *
19801163 TAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
19801228 CCCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAACC
* * * * * *
19801248 TAAGCCCTTGGTCATGCAGGAACCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
19801313 CTCGGGCACCATCGCCAACC
66 CTCGGACACCATCGGCAACC
*
19801333 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
**
19801397 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * *
19801418 TAGGCCCATGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
19801483 CTCGGGCACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
19801503 TAGGCCCTTGGTCGTGC
1 TAGGCCCTTGGTCGTGC
19801520 CAAAGTTTAG
Statistics
Matches: 238, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
84 1 0.00
85 236 0.99
86 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:19803081 original size:29 final size:28
Alignment explanation
Indices: 19802958--19803089 Score: 102
Period size: 30 Copynumber: 4.5 Consensus size: 28
19802948 TGGTTAACCC
* ** *
19802958 ATCCCTTTCCATAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAA-TTGATAGTCGAA-CT
* * *
19802988 ATCCCTTTTCATAGTTCAACAGTCGAAGCT
1 ATCCCTTTTCATAATT-GATAGTCGAA-CT
* * *
19803018 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAA-TTGATAGTCG-AACT
19803048 ATCCCTTTTCATAATTGATAGTCGAATCT
1 ATCCCTTTTCATAATTGATAGTCGAA-CT
*
19803077 TTCCCTTTTCATA
1 ATCCCTTTTCATA
19803090 GATCTATGAT
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 24 0.30
30 53 0.65
31 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (28 bp):
ATCCCTTTTCATAATTGATAGTCGAACT
Found at i:19804239 original size:341 final size:341
Alignment explanation
Indices: 19803616--19804302 Score: 1311
Period size: 341 Copynumber: 2.0 Consensus size: 341
19803606 TTTTCTACCA
19803616 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
1 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
19803681 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
66 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
*
19803746 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCGAACCTTCAAAGCACAATATGGTGTTTTC
131 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
*
19803811 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTTATACCAAAAAATTTTGTTTTGTTTTACT
196 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
19803876 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
261 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
19803941 AAATGTCCACTCAAAT
326 AAATGTCCACTCAAAT
* *
19803957 TAAAACATCAAAGCAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATACTTTTACAAAT
1 TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
*
19804022 TAGTCCCCGTGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
66 TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
*
19804087 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCTAAACCTTCAAAGCACAATATGGTGTTTTC
131 ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
*
19804152 TTTCTCCAAAAATCGGTGAAACAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
196 TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
19804217 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
261 TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
19804282 AAATGTCCACTCAAAT
326 AAATGTCCACTCAAAT
19804298 TAAAA
1 TAAAA
19804303 ATGGTCTATT
Statistics
Matches: 339, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
341 339 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.32
Consensus pattern (341 bp):
TAAAACATCAAAACAACATAATATCATTCATGGAAAAACCCTAACCTTTTAATAATTTTACAAAT
TAGTCCCCGGGCTAGCTAAATTAAGTTATAACGACTCTAAAAACATAGAAATCATTAAAAACGGG
ATAAAAAATTACTTACTTGCACAAGGTAGCCTAGCCAAACCTTCAAAGCACAATATGGTGTTTTC
TTTCTCCAAAAATCGGTGAAAAAAAGTGAGAAAGTTGATACCAAAAAATTTTGTTTTGTTTTACT
TAATTAATTAATTTACTTATTTAACCTTTTAATTAACCTTTGAAAAACACTTGTATAATGTCCAT
AAATGTCCACTCAAAT
Found at i:19805876 original size:56 final size:50
Alignment explanation
Indices: 19805780--19806014 Score: 254
Period size: 50 Copynumber: 4.6 Consensus size: 50
19805770 ATTTGGGTAA
* * *
19805780 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCCTTGAGGTCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GA-G--ATG
* * *
19805836 AGAGGTCCTATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
19805886 AGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCGTTGGTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
19805936 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
19805986 AGAACTCCTATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
19806015 TATAGTATTG
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 113 0.72
52 1 0.01
53 2 0.01
55 2 0.01
56 39 0.25
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:19811401 original size:47 final size:47
Alignment explanation
Indices: 19811332--19811458 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
19811322 ATTGCATTAT
* * * * * * * *
19811332 TGGCAGCTTGTCTACATATATTGGCATTTTATTTGCATTATCGTTAC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
19811379 TGGCAGCTTGTCTGTATATATTGACAATTTATCTACATTACCATCAT
1 TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
* *
19811426 TGGCAGCTTGTTTGCATATATTGAGAATTTATC
1 TGGCAGCTTGTCTGCATATATTGACAATTTATC
19811459 CACACTACTG
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (47 bp):
TGGCAGCTTGTCTGCATATATTGACAATTTATCTACATTACCATCAC
Found at i:19813322 original size:30 final size:29
Alignment explanation
Indices: 19813262--19813344 Score: 123
Period size: 30 Copynumber: 2.9 Consensus size: 29
19813252 CAAAAACTTA
* * *
19813262 TATTCGTCATAATGAA-GTTTTAGCTTTT
1 TATTCGCCATAATGAATTTTTTGGCTTTT
19813290 TATTCGCCATAATGAATTTTTTGGCTTTTT
1 TATTCGCCATAATGAATTTTTTGGC-TTTT
19813320 TATTCGCCATAATGAATTTTTTGGC
1 TATTCGCCATAATGAATTTTTTGGC
19813345 ACTCCATCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 15 0.30
29 6 0.12
30 29 0.58
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.49
Consensus pattern (29 bp):
TATTCGCCATAATGAATTTTTTGGCTTTT
Found at i:19813572 original size:20 final size:20
Alignment explanation
Indices: 19813534--19813572 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
19813524 AAATAAAAAA
* *
19813534 ATATTTTTTCATTACTTTAT
1 ATATTTTTTAATAACTTTAT
*
19813554 ATATTTTTTAATAATTTTA
1 ATATTTTTTAATAACTTTA
19813573 ATAATTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATATTTTTTAATAACTTTAT
Found at i:19820767 original size:21 final size:21
Alignment explanation
Indices: 19820749--19820789 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19820739 AACAAAATAG
19820749 TAAAACATAATACTGAAATGA
1 TAAAACATAATACTGAAATGA
* *
19820770 TAGAACATAATAGTGAAATG
1 TAAAACATAATACTGAAATG
19820790 GTAGCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.07, G:0.15, T:0.24
Consensus pattern (21 bp):
TAAAACATAATACTGAAATGA
Found at i:19820836 original size:20 final size:21
Alignment explanation
Indices: 19820813--19820860 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
19820803 AAAAAAAAAG
19820813 AAAATAGCA-AAAAACAGTAA
1 AAAATAGCAGAAAAACAGTAA
* *
19820833 AAAA-AGCAGGAAAATAGTAA
1 AAAATAGCAGAAAAACAGTAA
19820853 AAAGATAG
1 AAA-ATAG
19820861 TAGTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 1 0.04
22 2 0.09
ACGTcount: A:0.67, C:0.06, G:0.17, T:0.10
Consensus pattern (21 bp):
AAAATAGCAGAAAAACAGTAA
Found at i:19820846 original size:30 final size:28
Alignment explanation
Indices: 19820795--19820855 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
19820785 AAATGGTAGC
*
19820795 AAAATAGTAAAAAAAAAGAAAATAGCAA
1 AAAACAGTAAAAAAAAAGAAAATAGCAA
* *
19820823 AAAACAGTAAAAAAAGCAGGAAAATAGTAA
1 AAAACAGTAAAAAAA--AAGAAAATAGCAA
19820853 AAA
1 AAA
19820856 GATAGTAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.50
30 14 0.50
ACGTcount: A:0.72, C:0.05, G:0.13, T:0.10
Consensus pattern (28 bp):
AAAACAGTAAAAAAAAAGAAAATAGCAA
Found at i:19825709 original size:13 final size:13
Alignment explanation
Indices: 19825691--19825720 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
19825681 CAATAAAGAG
*
19825691 ATATATAATTTAT
1 ATATATAAGTTAT
19825704 ATATATAAGTTAT
1 ATATATAAGTTAT
19825717 ATAT
1 ATAT
19825721 GTTATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATATATAAGTTAT
Found at i:19833242 original size:21 final size:20
Alignment explanation
Indices: 19833218--19833266 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
19833208 TAAATTTAAC
*
19833218 TCAATTTAATACAATTCATAT
1 TCAATTTAATACAATCCA-AT
* *
19833239 TCAATTCAATCCAATCCAAT
1 TCAATTTAATACAATCCAAT
19833259 TCATATTT
1 TCA-ATTT
19833267 TAGGCAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (20 bp):
TCAATTTAATACAATCCAAT
Found at i:19834766 original size:27 final size:27
Alignment explanation
Indices: 19834736--19834888 Score: 144
Period size: 27 Copynumber: 5.7 Consensus size: 27
19834726 TCAGAACATG
* **
19834736 CCACAAAGGCTATTCTTTTAGAGTATT
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * * **
19834763 CCACAAATGTTATTCTTTTAGAGTATG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* * *
19834790 CCACAAAAGCTATTCTTTCATAGTACG
1 CCACAAAGGCTATTCTTTCAGAGTACA
* ** *
19834817 CCATAAAGATTATTCTTTCATAGTACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
* *
19834844 CCACAAAGGTTATTCTTTCAGAGAACA
1 CCACAAAGGCTATTCTTTCAGAGTACA
*
19834871 CCATAAAGGCTATTCTTT
1 CCACAAAGGCTATTCTTT
19834889 TAAAATACGC
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTACA
Found at i:19834875 original size:54 final size:53
Alignment explanation
Indices: 19834735--19834911 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 53
19834725 ATCAGAACAT
* * ** * * *
19834735 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
* * * *
19834789 GCCACAAAAGCTATTCTTTCATAGTACGCCATAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAG-TTATTCTTTTAAAGTAC
* * * * * *
19834843 ACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGCTATTCTTTCAGAGTACACCATAAA-GTTATTCTTTTAAAGTAC
*
19834897 GCCACAAAAGTTATT
1 GCCACAAAAGCTATT
19834912 TCTTAGCTGT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 98 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (53 bp):
GCCACAAAAGCTATTCTTTCAGAGTACACCATAAAGTTATTCTTTTAAAGTAC
Found at i:19834911 original size:27 final size:27
Alignment explanation
Indices: 19834735--19834911 Score: 122
Period size: 27 Copynumber: 6.6 Consensus size: 27
19834725 ATCAGAACAT
* * * * *
19834735 GCCACAAAGGCTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * *
19834762 TCCACAAATGTTATTCTTTTAGAGTAT
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
19834789 GCCACAAAAGCTATTCTTTCATAGTAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* *
19834816 GCCA-TAAAGATTATTCTTTCATAGTAC
1 GCCACAAAAG-TTATTCTTTCAAAGTAC
* * * *
19834843 ACCACAAAGGTTATTCTTTCAGAGAAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
* * * * * *
19834870 ACCATAAAGGCTATTCTTTTAAAATAC
1 GCCACAAAAGTTATTCTTTCAAAGTAC
19834897 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
19834912 TCTTAGCTGT
Statistics
Matches: 122, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.03
27 115 0.94
28 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (27 bp):
GCCACAAAAGTTATTCTTTCAAAGTAC
Found at i:19834911 original size:81 final size:81
Alignment explanation
Indices: 19834735--19834911 Score: 185
Period size: 81 Copynumber: 2.2 Consensus size: 81
19834725 ATCAGAACAT
* * * ** * * * **
19834735 GCCACAAAGGCTATTCTTTTAGAGTATTCCACAAATGTTATTCTTTTAGAGTATGCCACAAAAGC
1 GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
* *
19834800 TATTCTTTCATAGTAC
66 TATTCTTTCAAAATAC
* * * *
19834816 GCCA-TAAAGATTATTCTTTCATAGTACACCACAAAGGTTATTCTTTCAGAGAACACCATAAAGG
1 GCCACAAAAG-TTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAG
*
19834880 CTATTCTTTTAAAATAC
65 CTATTCTTTCAAAATAC
19834897 GCCACAAAAGTTATT
1 GCCACAAAAGTTATT
19834912 TCTTAGCTGT
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
80 3 0.04
81 69 0.91
82 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (81 bp):
GCCACAAAAGTTATTCTTTCAGAGTACACCACAAAGGTTATTCTTTCAGAGAACACCACAAAAGC
TATTCTTTCAAAATAC
Found at i:19836382 original size:27 final size:27
Alignment explanation
Indices: 19836323--19836382 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
19836313 CAACCAATAG
*
19836323 AGTCTGTCGAGATATTAAAAGCGAGGC
1 AGTCTGTCGAGATAGTAAAAGCGAGGC
* *
19836350 AATCTGTCGAGATAGTAAACA-CGAGGT
1 AGTCTGTCGAGATAGTAAA-AGCGAGGC
19836377 AGTCTG
1 AGTCTG
19836383 CTAGAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.23
Consensus pattern (27 bp):
AGTCTGTCGAGATAGTAAAAGCGAGGC
Found at i:19841807 original size:4 final size:4
Alignment explanation
Indices: 19841800--19841842 Score: 65
Period size: 4 Copynumber: 11.5 Consensus size: 4
19841790 TCAGTCACCC
19841800 TTCT TTCT TTCT TTCT TTCT TTCT TTC- TT-T TTCT TTC- TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
19841843 TTATTTTACA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 7 0.19
4 29 0.81
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:19848707 original size:21 final size:20
Alignment explanation
Indices: 19848668--19848707 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
19848658 ATCATATAAA
*
19848668 TTAAAAATTACAATTATTTT
1 TTAAAAATTACAATGATTTT
*
19848688 TTAAAAATTTATAATGATTT
1 TTAAAAA-TTACAATGATTT
19848708 ATCAAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (20 bp):
TTAAAAATTACAATGATTTT
Found at i:19850859 original size:21 final size:21
Alignment explanation
Indices: 19850826--19850876 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
19850816 TAAATGTCCT
* *
19850826 TAGATATAATAAAAATGAAAAA
1 TAGATAT-TTAAAAAAGAAAAA
*
19850848 TAGATATTTAAAAAAGATAAA
1 TAGATATTTAAAAAAGAAAAA
*
19850869 CAGATATT
1 TAGATATT
19850877 AATTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (21 bp):
TAGATATTTAAAAAAGAAAAA
Found at i:19852108 original size:30 final size:30
Alignment explanation
Indices: 19852074--19852136 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
19852064 ACTTAACAAG
19852074 CAAATGCATATAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
* *
19852104 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCATATAAAATAATAACAAAATTAA
19852134 CAA
1 CAA
19852137 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCATATAAAATAATAACAAAATTAA
Found at i:19854861 original size:26 final size:26
Alignment explanation
Indices: 19854832--19854883 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19854822 ATTTTTTTTA
19854832 ATAA-ATTTAGAATTTTTTAAAAATAT
1 ATAAGATTTAG-ATTTTTTAAAAATAT
* *
19854858 ATAAGTTTTAGATTTTTTATAAATAT
1 ATAAGATTTAGATTTTTTAAAAATAT
19854884 TTTGAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (26 bp):
ATAAGATTTAGATTTTTTAAAAATAT
Found at i:19855372 original size:12 final size:12
Alignment explanation
Indices: 19855355--19855379 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19855345 TAGGTCACTG
19855355 TTTCTTTTCTTT
1 TTTCTTTTCTTT
19855367 TTTCTTTTCTTT
1 TTTCTTTTCTTT
19855379 T
1 T
19855380 CCCGATTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:19855612 original size:31 final size:31
Alignment explanation
Indices: 19855574--19855646 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
19855564 GATTAAAAAA
19855574 CGGGCCGGGCCTCGGGCACTACTTTTTTGTC
1 CGGGCCGGGCCTCGGGCACTACTTTTTTGTC
19855605 CGGGCCGGGCCTCGGGCACTACTTTTTTGTC
1 CGGGCCGGGCCTCGGGCACTACTTTTTTGTC
* *
19855636 CTGGCCCGGCC
1 CGGGCCGGGCC
19855647 CGGCCCGGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.05, C:0.36, G:0.33, T:0.26
Consensus pattern (31 bp):
CGGGCCGGGCCTCGGGCACTACTTTTTTGTC
Found at i:19855710 original size:11 final size:11
Alignment explanation
Indices: 19855696--19855721 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
19855686 TTTTTTTAAA
19855696 TTTTAAAATAC
1 TTTTAAAATAC
19855707 TTTTAAAATAC
1 TTTTAAAATAC
19855718 TTTT
1 TTTT
19855722 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:19855722 original size:38 final size:38
Alignment explanation
Indices: 19855680--19855833 Score: 182
Period size: 38 Copynumber: 3.8 Consensus size: 38
19855670 TTTTTTTATT
* *
19855680 TTTTTATTTTTTTAAATTTTAAAATACTTTTAAAATAC
1 TTTTTATTTTTTTTAATTTTAAAATATTTTTAAAATAC
*
19855718 TTTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTATT--TTTTTTAATTTTAAAATATTTTTAAAATAC
* *
19855758 TTTTAATTTTTTTTAATTTTAAAATATTTTTAAAATAAAAT
1 TTTTTATTTTTTTTAATTTTAAAATATTTTTAAAAT---AC
19855799 TTTTTATTTTTGTTTTAATTTTTAAAATAATTTTT
1 TTTTTA-TTTT-TTTTAA-TTTTAAAAT-ATTTTT
19855834 TGGTATTTAT
Statistics
Matches: 100, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
38 35 0.35
40 34 0.34
41 6 0.06
42 4 0.04
43 6 0.06
44 9 0.09
45 6 0.06
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (38 bp):
TTTTTATTTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:19867701 original size:3 final size:3
Alignment explanation
Indices: 19867693--19867728 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
19867683 AATATTTTTG
19867693 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
19867729 CATTTTCAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:19868186 original size:36 final size:39
Alignment explanation
Indices: 19868123--19868195 Score: 91
Period size: 37 Copynumber: 1.9 Consensus size: 39
19868113 ACAATATCCA
*
19868123 AACAATAACAACAGAAAAGTGGTAAT-AACAA-AATGGC
1 AACAATAACAACAGAAAAGTGGAAATAAACAACAATGGC
*
19868160 AACAA-AACAACATTAAAA-TGGAAATAAACAACAATG
1 AACAATAACAACA-GAAAAGTGGAAATAAACAACAATG
19868196 AAAATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 13 0.42
37 14 0.45
38 4 0.13
ACGTcount: A:0.60, C:0.14, G:0.12, T:0.14
Consensus pattern (39 bp):
AACAATAACAACAGAAAAGTGGAAATAAACAACAATGGC
Found at i:19869136 original size:20 final size:20
Alignment explanation
Indices: 19869111--19869155 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
19869101 ATTTATTTAT
* *
19869111 TAAAATAATATTTTTATAAA
1 TAAAATAATAATCTTATAAA
*
19869131 TAAAATAATAATCTTATACA
1 TAAAATAATAATCTTATAAA
19869151 TAAAA
1 TAAAA
19869156 CAATTTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:19869629 original size:30 final size:30
Alignment explanation
Indices: 19869593--19869652 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
19869583 CTTATTTTAG
19869593 TTTCAATGTTTGAATGCCTCGAGACAATGA
1 TTTCAATGTTTGAATGCCTCGAGACAATGA
19869623 TTTCAATGTTTGAATGCCTCGAGACAATGA
1 TTTCAATGTTTGAATGCCTCGAGACAATGA
19869653 GTTCTTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (30 bp):
TTTCAATGTTTGAATGCCTCGAGACAATGA
Found at i:19874586 original size:15 final size:15
Alignment explanation
Indices: 19874562--19874593 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
19874552 ATTATTGACT
19874562 AAAATAAAAAAATTA
1 AAAATAAAAAAATTA
*
19874577 AAAATTAAAAAATTA
1 AAAATAAAAAAATTA
19874592 AA
1 AA
19874594 TAAAAATACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATAAAAAAATTA
Found at i:19878408 original size:15 final size:16
Alignment explanation
Indices: 19878385--19878428 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
19878375 GGTTAGGGTT
*
19878385 TTTAATATTTTT-AGG
1 TTTAGTATTTTTAAGG
19878400 TTTAGTATTTTTTAAGG
1 TTTAGTA-TTTTTAAGG
*
19878417 TTTAGGATTTTT
1 TTTAGTATTTTT
19878429 TGGGTATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 10 0.40
17 9 0.36
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.61
Consensus pattern (16 bp):
TTTAGTATTTTTAAGG
Found at i:19878413 original size:16 final size:17
Alignment explanation
Indices: 19878392--19878429 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
19878382 GTTTTTAATA
*
19878392 TTTTT-AGGTTTAGTAT
1 TTTTTAAGGTTTAGGAT
19878408 TTTTTAAGGTTTAGGAT
1 TTTTTAAGGTTTAGGAT
19878425 TTTTT
1 TTTTT
19878430 GGGTATTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.63
Consensus pattern (17 bp):
TTTTTAAGGTTTAGGAT
Found at i:19887741 original size:21 final size:21
Alignment explanation
Indices: 19887717--19887760 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
19887707 GGTAAGGGGT
19887717 GTTGTATTTAGTGGTAGCAGA
1 GTTGTATTTAGTGGTAGCAGA
*
19887738 GTTGTATTTAGTGGTATCAGA
1 GTTGTATTTAGTGGTAGCAGA
19887759 GT
1 GT
19887761 AGGTTTAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.32, T:0.41
Consensus pattern (21 bp):
GTTGTATTTAGTGGTAGCAGA
Found at i:19899382 original size:66 final size:66
Alignment explanation
Indices: 19899276--19899434 Score: 228
Period size: 66 Copynumber: 2.4 Consensus size: 66
19899266 AGCCTAGCAC
* * * * *
19899276 GGCCTAGCAGACGGCCGTGTGGCTTGGACGTGTGTCACAAGTCAGTATACTCACCATTTTTTACA
1 GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
19899341 T
66 T
* * * *
19899342 GGCCTAGCACACGGGCATGTGGCTTGGCCATGTGTCACAAGTTAGTATGCTCACCATTTTTGACA
1 GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
19899407 T
66 T
*
19899408 GGCCTAGCAAACGGGCATGCGGCTTGG
1 GGCCTAGCAAACGGGCATGTGGCTTGG
19899435 TCGTGTGACC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 83 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (66 bp):
GGCCTAGCAAACGGGCATGTGGCTTGGACATGTGTCACAAGTCAGTATACTCACCATTTTTGACA
T
Found at i:19899864 original size:51 final size:51
Alignment explanation
Indices: 19899805--19899906 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
19899795 CGGGTTAGGG
19899805 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
1 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
19899856 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
1 GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
19899907 CGTAGCGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (51 bp):
GTGTTACATTTATTAGTATCAGAGCTACAGTTTAGTCGATTCTCGGACTAA
Found at i:19905803 original size:34 final size:35
Alignment explanation
Indices: 19905754--19905820 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
19905744 CAGTAAAATG
* *
19905754 TTTTCCGTAAGATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
* *
19905788 TTTTCTGTAAAATGATTTATTGTAAAATATTTT
1 TTTTCCGTAAAATGATTTATTGGAAAATATTTT
19905821 TTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTATTGGAAAATATTTTAC
Found at i:19912700 original size:66 final size:66
Alignment explanation
Indices: 19912578--19912761 Score: 262
Period size: 66 Copynumber: 2.8 Consensus size: 66
19912568 CCTAAAACGG
* * * *
19912578 CCTAGCACACGGGCGTGTGGCTTGGACGTGTGTCACAAGTCTGTATACTCAACATTTTTCACATG
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
19912643 A
66 A
* *
19912644 CCTAACACACGGACGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
*
19912709 G
66 A
* * *
19912710 CCTAGCACACGGGCATGTGGCTTGGCCGTGTGACCCAAGTCAGTGA-GCTCAC
1 CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGT-ATGCTCAC
19912762 TAGTTTGGAC
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
66 104 0.99
67 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (66 bp):
CCTAGCACACGGGCGTGTGGCTTGGCCGTGTGTCACAAGTCAGTATGCTCACCATTTTTCACATG
A
Found at i:19923646 original size:14 final size:13
Alignment explanation
Indices: 19923623--19923671 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
19923613 AATTCAAAGT
19923623 AAATAATAATTTA
1 AAATAATAATTTA
19923636 AAATAAATAATTTA
1 AAAT-AATAATTTA
* * *
19923650 CAACAACAATTTA
1 AAATAATAATTTA
19923663 AAA-AATAAT
1 AAATAATAAT
19923672 AATAAAAGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 5 0.17
13 14 0.47
14 11 0.37
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATAATTTA
Found at i:19925748 original size:37 final size:37
Alignment explanation
Indices: 19925698--19925772 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
19925688 ACCTAAACAA
19925698 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
1 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
19925735 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
1 AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
19925772 A
1 A
19925773 CTTAATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (37 bp):
AAATGACATGTTTCATAAGTAACAAGCAAAAAACCCT
Found at i:19927273 original size:4 final size:4
Alignment explanation
Indices: 19927264--19927289 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
19927254 ATCAAATTGC
19927264 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
19927290 CTGACACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:19938220 original size:95 final size:95
Alignment explanation
Indices: 19938053--19938228 Score: 257
Period size: 95 Copynumber: 1.9 Consensus size: 95
19938043 GGCGTCATTA
* * *
19938053 ATAGTAGTGGAATTCATAGTCCAATAAAAGGTAAATGATATCATCTCATAGGCATGACATGGTTG
1 ATAGTAGTGAAATTCATACTCCAATAAAAGGTAAATGATATCATCTCATAAGCATGACATGGTTG
*
19938118 GTAGAAAAGTAACATGACATGACTTCCTTT
66 ATAGAAAAGTAACATGACATGACTTCCTTT
* *
19938148 ATAGTAGTGAAATTCATAACT-CGATAAAAGGTAAATGATATTC-TCTCATAAGCATTACATGGT
1 ATAGTAGTGAAATTCAT-ACTCCAATAAAAGGTAAATGATA-TCATCTCATAAGCATGACATGGT
*
19938211 TGATGGAAAAGTAACATG
64 TGATAGAAAAGTAACATG
19938229 GTCATGGGTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
95 68 0.94
96 4 0.06
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (95 bp):
ATAGTAGTGAAATTCATACTCCAATAAAAGGTAAATGATATCATCTCATAAGCATGACATGGTTG
ATAGAAAAGTAACATGACATGACTTCCTTT
Found at i:19941866 original size:13 final size:13
Alignment explanation
Indices: 19941850--19941874 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19941840 ATGTTTAGAT
19941850 GAAATGGTTATAC
1 GAAATGGTTATAC
19941863 GAAATGGTTATA
1 GAAATGGTTATA
19941875 TGAGATGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (13 bp):
GAAATGGTTATAC
Found at i:19941866 original size:26 final size:26
Alignment explanation
Indices: 19941812--19941877 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
19941802 ATTATGTATT
* *
19941812 AAATGTGTAAATGAAATGGTAAAATG
1 AAATGTTTAAATGAAATGGTAAAACG
* * *
19941838 AAATGTTTAGATGAAATGGTTATACG
1 AAATGTTTAAATGAAATGGTAAAACG
* *
19941864 AAATGGTTATATGA
1 AAATGTTTAAATGA
19941878 GATGATTGTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.32
Consensus pattern (26 bp):
AAATGTTTAAATGAAATGGTAAAACG
Found at i:19951436 original size:14 final size:14
Alignment explanation
Indices: 19951417--19951456 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
19951407 TATAATCTTC
19951417 TTTTATATTTTAAT
1 TTTTATATTTTAAT
*
19951431 TTTTATATATTAAAT
1 TTTTATAT-TTTAAT
19951446 TTTTATATTTT
1 TTTTATATTTT
19951457 TATATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTATATTTTAAT
Found at i:19951448 original size:21 final size:22
Alignment explanation
Indices: 19951424--19951466 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
19951414 TTCTTTTATA
19951424 TTTTA-ATTTTTATATATTAAAT
1 TTTTATATTTTTATAT-TTAAAT
19951446 TTTTATATTTTTATATTTAAA
1 TTTTATATTTTTATATTTAAA
19951467 AATCTTGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTATATTTTTATATTTAAAT
Found at i:19951457 original size:8 final size:8
Alignment explanation
Indices: 19951417--19951463 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
19951407 TATAATCTTC
19951417 TTTTATA-
1 TTTTATAT
19951424 TTTTA-AT
1 TTTTATAT
19951431 TTTTATA-
1 TTTTATAT
* *
19951438 TATTAAAT
1 TTTTATAT
19951446 TTTTATAT
1 TTTTATAT
19951454 TTTTATAT
1 TTTTATAT
19951462 TT
1 TT
19951464 AAAAATCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
6 1 0.03
7 15 0.45
8 17 0.52
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTTATAT
Found at i:19954262 original size:15 final size:15
Alignment explanation
Indices: 19954242--19954281 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 15
19954232 GTTATCATTA
19954242 TTTTTACTATTATTG
1 TTTTTACTATTATTG
19954257 TTTTTA--A-TATTG
1 TTTTTACTATTATTG
*
19954269 TTATTACTATTAT
1 TTTTTACTATTAT
19954282 CATGCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
12 10 0.48
13 1 0.05
14 1 0.05
15 9 0.43
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
TTTTTACTATTATTG
Found at i:19954955 original size:14 final size:14
Alignment explanation
Indices: 19954933--19954966 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
19954923 TCCAATCACC
*
19954933 GGGCCAGTTTGGTT
1 GGGCTAGTTTGGTT
19954947 GGGCTAGTTTGGTT
1 GGGCTAGTTTGGTT
19954961 GGGCTA
1 GGGCTA
19954967 AATGACCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.09, C:0.12, G:0.44, T:0.35
Consensus pattern (14 bp):
GGGCTAGTTTGGTT
Found at i:19960076 original size:14 final size:14
Alignment explanation
Indices: 19960057--19960088 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
19960047 TCCAATCACC
19960057 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
19960071 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
19960085 GGGC
1 GGGC
19960089 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:19960420 original size:18 final size:18
Alignment explanation
Indices: 19960399--19960438 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
19960389 TACAACTTAC
*
19960399 ATATACATCTATATATAT
1 ATATACATCTACATATAT
*
19960417 ATATATATCTACATATAT
1 ATATACATCTACATATAT
19960435 ATAT
1 ATAT
19960439 TATACTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATACATCTACATATAT
Found at i:19960422 original size:36 final size:36
Alignment explanation
Indices: 19960346--19960422 Score: 86
Period size: 36 Copynumber: 2.1 Consensus size: 36
19960336 ACATATCTTT
* * *
19960346 TATATTTTATAATTCACATATACATATATATTTTCC
1 TATATTTTACAATTCACATATACATATATATTATCA
*
19960382 TATATTTTACAACTT-ACATATACATCTATATATAT-A
1 TATATTTTACAA-TTCACATATACATATATAT-TATCA
19960418 TATAT
1 TATAT
19960423 ATCTACATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 31 0.89
37 4 0.11
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (36 bp):
TATATTTTACAATTCACATATACATATATATTATCA
Found at i:19960881 original size:19 final size:19
Alignment explanation
Indices: 19960857--19960896 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
19960847 AATGCTCTTT
*
19960857 AATCAAAAATATAAATAAA
1 AATCAAAAACATAAATAAA
19960876 AATCAAAAACATAAATAAA
1 AATCAAAAACATAAATAAA
19960895 AA
1 AA
19960897 ACTCATTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (19 bp):
AATCAAAAACATAAATAAA
Found at i:19961482 original size:6 final size:6
Alignment explanation
Indices: 19961471--19961495 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
19961461 TGACAACTCC
19961471 CGTTTT CGTTTT CGTTTT CGTTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT C
19961496 AAAATCCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.16, T:0.64
Consensus pattern (6 bp):
CGTTTT
Found at i:19962834 original size:17 final size:17
Alignment explanation
Indices: 19962814--19962848 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
19962804 ATTTATTTAA
*
19962814 TCAATTAATTTAATTTC
1 TCAATTAAATTAATTTC
*
19962831 TCAATTAAATTATTTTC
1 TCAATTAAATTAATTTC
19962848 T
1 T
19962849 TAACTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (17 bp):
TCAATTAAATTAATTTC
Found at i:19969452 original size:13 final size:13
Alignment explanation
Indices: 19969434--19969462 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
19969424 ATGCCGGGTA
19969434 GATTACATATTAG
1 GATTACATATTAG
19969447 GATTACATATTAG
1 GATTACATATTAG
19969460 GAT
1 GAT
19969463 CAAAAGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (13 bp):
GATTACATATTAG
Found at i:19975018 original size:40 final size:40
Alignment explanation
Indices: 19974945--19975089 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 40
19974935 AAACAGGCCT
* ** *
19974945 TTAGCGGCGTTTGGATAAAAAAAGCCGCTAAAGATCGAGCA
1 TTAGCGGCGTTT-CATGGAAAACGCCGCTAAAGATCGAGCA
* * *
19974986 TTAGCAGCGTTTCTTGGAAAACGCCGCTAAAGATCGAGTA
1 TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
*
19975026 TTAGCGGCGTTT-ATGGAAAACGCCGCTAAA-AT-AAGCA
1 TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
* * * *
19975063 TTAGTGGCGTTTCCTAGAAAGCGCCGC
1 TTAGCGGCGTTTCATGGAAAACGCCGC
19975090 AAAAAACCTA
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
37 14 0.16
38 13 0.15
39 17 0.19
40 33 0.38
41 11 0.12
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (40 bp):
TTAGCGGCGTTTCATGGAAAACGCCGCTAAAGATCGAGCA
Found at i:19975173 original size:41 final size:41
Alignment explanation
Indices: 19975112--19975480 Score: 430
Period size: 41 Copynumber: 9.0 Consensus size: 41
19975102 CTCGAGGATA
*
19975112 TAGCGGCGTTTTT-GAGAAAGCACCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGA-AAAGCGCCGCTAATGCTCAGGGCTT
* * *
19975153 TAGCGGCGTTTTTGGAAAAGCGTCGCTAATACTAAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
19975194 TAGCAGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* * * *
19975235 TAGCAGCGTTTTTGGGAATGTGCCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
19975276 TAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGATT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
* *
19975317 TAACGGCGTTTTTGG-AAAGCGTCGCTAATGCTCAGGGCTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
*
19975357 TAGCGGCG-TTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTT
1 TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGC-TT
* * **
19975398 TAGCGGCATTTTT-GATAAAACGCCG-TGAATGCTCTA--TTTT
1 TAGCGGCGTTTTTGGA-AAAGCGCCGCT-AATGCTC-AGGGCTT
* * *
19975438 TAACGGCGTTTTCT-AAAAAGCGCCGCTAATGCTCAGGGATT
1 TAGCGGCGTTTT-TGGAAAAGCGCCGCTAATGCTCAGGGCTT
19975479 TA
1 TA
19975481 AAATAATTTA
Statistics
Matches: 286, Mismatches: 31, Indels: 22
0.84 0.09 0.06
Matches are distributed among these distances:
39 7 0.02
40 78 0.27
41 179 0.63
42 21 0.07
43 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (41 bp):
TAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTT
Found at i:19975422 original size:122 final size:120
Alignment explanation
Indices: 19975112--19975480 Score: 429
Period size: 122 Copynumber: 3.0 Consensus size: 120
19975102 CTCGAGGATA
* * *
19975112 TAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGTC
1 TAGCGGCGTTTTGGA-AAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GAAAAGCGCC
* * * * *
19975177 GCTAATACTAAGGGCTTTAGCAGCGTTTTTGGGAAAGCGCCGCTAATGCTCAGGGCTT
64 GCTAATGCTCAGGGATTTAACGGCGTTTTT-GGAAAGCGCCGCTAATGCTCAGGGCTT
* * * * *
19975235 TAGCAGCGTTTTTGGGAATGTGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCC
1 TAGCGGCG-TTTTGGAAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT-GAAAAGCGCC
*
19975300 GCTAATGCTCAGGGATTTAACGGCGTTTTTGGAAAGCGTCGCTAATGCTCAGGGCTT
64 GCTAATGCTCAGGGATTTAACGGCGTTTTTGGAAAGCGCCGCTAATGCTCAGGGCTT
* * *
19975357 TAGCGGCGTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTTAGCGGCATTTTTGATAAAACGCC
1 TAGCGGCGTTTTGGAAAAGCGCCGCTAATGCTCAGGGC-TTTAGCGGCGTTTTTGA-AAAGCGCC
** ** *
19975422 G-TGAATGCTCTA--TTTTTAACGGCGTTTTCTAAAAAGCGCCGCTAATGCTCAGGGATT
64 GCT-AATGCTC-AGGGATTTAACGGCGTTTT-TGGAAAGCGCCGCTAATGCTCAGGGCTT
19975479 TA
1 TA
19975481 AAATAATTTA
Statistics
Matches: 212, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
121 42 0.20
122 88 0.42
123 77 0.36
124 5 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (120 bp):
TAGCGGCGTTTTGGAAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGC
TAATGCTCAGGGATTTAACGGCGTTTTTGGAAAGCGCCGCTAATGCTCAGGGCTT
Found at i:19975759 original size:20 final size:21
Alignment explanation
Indices: 19975725--19975764 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
19975715 TGTGTTAAGG
19975725 GTTTATGGTTTTAGGGTTTAA
1 GTTTATGGTTTTAGGGTTTAA
19975746 GTTTATGG-TTTAGGGTTTA
1 GTTTATGGTTTTAGGGTTTA
19975765 GATTAACTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (21 bp):
GTTTATGGTTTTAGGGTTTAA
Found at i:19975765 original size:7 final size:7
Alignment explanation
Indices: 19975654--19975765 Score: 50
Period size: 7 Copynumber: 15.9 Consensus size: 7
19975644 TATCACTATA
19975654 GTTTAGG
1 GTTTAGG
* *
19975661 GGTTATG
1 GTTTAGG
*
19975668 GTTTATG
1 GTTTAGG
*
19975675 GTTTATG
1 GTTTAGG
*
19975682 GTTTAAAG
1 GTTT-AGG
* *
19975690 G-CTGGG
1 GTTTAGG
*
19975696 GTTTAAG
1 GTTTAGG
19975703 GTTTAGAG
1 GTTTAG-G
*
19975711 G-TTATGT
1 GTTTA-GG
*
19975718 GTTAAGG
1 GTTTAGG
19975725 GTTTATGG
1 GTTTA-GG
*
19975733 TTTTAGG
1 GTTTAGG
*
19975740 GTTTA-A
1 GTTTAGG
*
19975746 GTTTATG
1 GTTTAGG
19975753 GTTTAGG
1 GTTTAGG
19975760 GTTTAG
1 GTTTAG
19975766 ATTAACTAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
6 7 0.09
7 57 0.73
8 14 0.18
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:19976037 original size:14 final size:15
Alignment explanation
Indices: 19976011--19976068 Score: 79
Period size: 14 Copynumber: 4.1 Consensus size: 15
19976001 AATAATTATA
19976011 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
19976026 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
19976040 TATGG-TTTAAGGG-T
1 TATGGATTT-AGGGAT
19976054 TA-GGATTTAGGGAT
1 TATGGATTTAGGGAT
19976068 T
1 T
19976069 TTGTTTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
13 6 0.15
14 23 0.59
15 10 0.26
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:19976064 original size:28 final size:29
Alignment explanation
Indices: 19976011--19976076 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 29
19976001 AATAATTATA
19976011 TATGGATTT-AGGGATTATGGATTAGGGAT
1 TATGG-TTTAAGGGATTATGGATTAGGGAT
19976040 TATGGTTTAAGGG-TTA-GGATTTAGGGAT
1 TATGGTTTAAGGGATTATGGA-TTAGGGAT
*
19976068 T-TTGTTTAA
1 TATGGTTTAA
19976077 AATTAAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 10 0.29
28 15 0.44
29 9 0.26
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (29 bp):
TATGGTTTAAGGGATTATGGATTAGGGAT
Found at i:19979863 original size:43 final size:43
Alignment explanation
Indices: 19979775--19979880 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 43
19979765 TTTTTGCGAG
* *
19979775 AAGCGTCGCTAAAGGTTATGGTCTTTAGCGGCGTTTGCGACAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGACAA
* * * **
19979818 AAGTGCCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGACAA
*
19979861 AAGCGTCGCTAAAGGTCATG
1 AAGCGCCGCTAAAGGTCATG
19979881 ACTTTTAACG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCGACAA
Found at i:19979887 original size:43 final size:42
Alignment explanation
Indices: 19979775--19979896 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
19979765 TTTTTGCGAG
* *
19979775 AAGCGTCGCTAAAGGTTATGGTCTTTAGCGGCGTTTGCGACAA
1 AAGCGTCGCTAAAGGTCATGCT-TTTAGCGGCGTTTGCGACAA
* * * * **
19979818 AAGTGCCGCTAAAGGTCATGGTTTTTAGCGGCGTTTGTGGGAA
1 AAGCGTCGCTAAAGGTCAT-GCTTTTAGCGGCGTTTGCGACAA
* *
19979861 AAGCGTCGCTAAAGGTCATGACTTTTAACGACGTTT
1 AAGCGTCGCTAAAGGTCATG-CTTTTAGCGGCGTTT
19979897 ATTTCTAAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.02
43 62 0.95
44 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (42 bp):
AAGCGTCGCTAAAGGTCATGCTTTTAGCGGCGTTTGCGACAA
Found at i:19993647 original size:13 final size:13
Alignment explanation
Indices: 19993629--19993653 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19993619 AATTTGATAT
19993629 GTTTATGGTTGAA
1 GTTTATGGTTGAA
19993642 GTTTATGGTTGA
1 GTTTATGGTTGA
19993654 TTTGGTACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (13 bp):
GTTTATGGTTGAA
Found at i:20012414 original size:46 final size:45
Alignment explanation
Indices: 20012347--20012636 Score: 341
Period size: 46 Copynumber: 6.6 Consensus size: 45
20012337 TTTGAGTACT
* *
20012347 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
20012393 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ATTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* * *
20012429 TCTGATCAAGTGAAAAAGTAATAAGTGTTAGCCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
20012475 TCTGATTAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAG-CTTAGCTACACTTA
* *
20012521 TCTGATCAAGTGACAAATTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* * *
20012567 TCTGATCAAGTGACAAAGTGATAAGTGATAGCCTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
20012612 TCTGATCAAG-G-ACAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
20012637 ATCATACGTA
Statistics
Matches: 214, Mismatches: 19, Indels: 25
0.83 0.07 0.10
Matches are distributed among these distances:
36 27 0.13
38 1 0.00
39 1 0.00
40 3 0.01
41 1 0.00
42 4 0.02
43 14 0.07
44 2 0.01
45 23 0.11
46 138 0.64
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:20019538 original size:29 final size:29
Alignment explanation
Indices: 20019464--20019539 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
20019454 ATAATATATC
* *
20019464 AATT-AAAATGTTAACATAAATTTAAATA
1 AATTAAAAATGTTAAAATAAATTGAAATA
* * * *
20019492 AATTAACAATATTGAAATAAGTTGAAATA
1 AATTAAAAATGTTAAAATAAATTGAAATA
20019521 AATTAAAAATGTTAAAATA
1 AATTAAAAATGTTAAAATA
20019540 TTTGAAAGAG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 4 0.11
29 34 0.89
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.33
Consensus pattern (29 bp):
AATTAAAAATGTTAAAATAAATTGAAATA
Found at i:20023094 original size:23 final size:22
Alignment explanation
Indices: 20023051--20023094 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
20023041 TTTCAAGTCA
20023051 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
20023074 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
20023095 TTAATCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:20023314 original size:23 final size:23
Alignment explanation
Indices: 20023193--20023314 Score: 190
Period size: 23 Copynumber: 5.3 Consensus size: 23
20023183 ATAAGTGTCA
*
20023193 CACTAATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
20023216 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
20023239 CACTGAAATGTAGCCAAATCTAC
1 CACTGATATGTAGCCGAAGCTAC
20023262 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
20023285 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
20023308 CATTGAT
1 CACTGAT
20023315 CAATAACACT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 91 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:20023806 original size:29 final size:30
Alignment explanation
Indices: 20023760--20023817 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
20023750 TCCTTGACTC
20023760 AAACTTTTGCAAAATTACAATTTT-CCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
20023789 AAACTTTTTCATATTTACACTTTTGCCCC
1 AAACTTTTGCAAAATTACAATTTTGCCCC
20023818 AAAGCTCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:20027436 original size:40 final size:41
Alignment explanation
Indices: 20027341--20027443 Score: 172
Period size: 41 Copynumber: 2.5 Consensus size: 41
20027331 GATTTTATGT
*
20027341 CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTCATAAAC
* *
20027382 CTAGCAGGCTAAGTGCCGGTGATCTGAATCA-GTCATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTCATAAAC
20027422 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
20027444 ATATGTTAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
40 29 0.49
41 30 0.51
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTCATAAAC
Found at i:20029568 original size:3 final size:3
Alignment explanation
Indices: 20029560--20029594 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
20029550 TCCAGGCTTC
20029560 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
20029595 GGTGAGTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:20041186 original size:16 final size:15
Alignment explanation
Indices: 20041166--20041218 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
20041156 ATTGTTATTG
20041166 TCAATAATTTCAATA
1 TCAATAATTTCAATA
* *
20041181 TCCAATAAGTTTAAAAAA
1 T-CAATAA-TTT-CAATA
20041199 T-AATAATTTCAATA
1 TCAATAATTTCAATA
20041213 TCAATA
1 TCAATA
20041219 TCCAACCAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
16 11 0.37
17 3 0.10
18 4 0.13
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (15 bp):
TCAATAATTTCAATA
Found at i:20041220 original size:38 final size:40
Alignment explanation
Indices: 20041175--20041252 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
20041165 GTCAATAATT
* *
20041175 TCAATATCCAATAAGT-TT-AAAAAATAATAATTTCAATA
1 TCAATATCCAACAAGTATTAAAAAAATAACAATTTCAATA
* *
20041213 TCAATATCCAACCAGTATTAAAAAAATAACAATTTTAATA
1 TCAATATCCAACAAGTATTAAAAAAATAACAATTTCAATA
20041253 CTAAAACATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 14 0.41
39 2 0.06
40 18 0.53
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.32
Consensus pattern (40 bp):
TCAATATCCAACAAGTATTAAAAAAATAACAATTTCAATA
Found at i:20045149 original size:38 final size:39
Alignment explanation
Indices: 20045107--20045184 Score: 140
Period size: 38 Copynumber: 2.0 Consensus size: 39
20045097 TTTCAAGCGT
*
20045107 AGTTTAATTTATAATTTTATGAT-TTTTTATTATTTGTA
1 AGTTTAATTTATAATTTTATGATACTTTTATTATTTGTA
20045145 AGTTTAATTTATAATTTTATGATACTTTTATTATTTGTA
1 AGTTTAATTTATAATTTTATGATACTTTTATTATTTGTA
20045184 A
1 A
20045185 ATTCTTTTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 23 0.61
39 15 0.39
ACGTcount: A:0.31, C:0.01, G:0.08, T:0.60
Consensus pattern (39 bp):
AGTTTAATTTATAATTTTATGATACTTTTATTATTTGTA
Found at i:20046338 original size:12 final size:13
Alignment explanation
Indices: 20046305--20046342 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
20046295 TATTTAAGGT
20046305 TAATTAAGTTAATA
1 TAATTAA-TTAATA
20046319 TTAATTAATTAATA
1 -TAATTAATTAATA
20046333 -AATTAATTAA
1 TAATTAATTAA
20046343 CTAGTGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
TAATTAATTAATA
Found at i:20049960 original size:36 final size:36
Alignment explanation
Indices: 20049898--20049974 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
20049888 TATTTCTAAT
* * * * *
20049898 TTTATCCGTCTAGTGCTAGGCGCAAAATATTATCGG
1 TTTATCCGACTAGCGCTAGGCACAAAACATTATCGA
20049934 TTTATCCGACTAGCGCT-GAGCACAAAACATTATCGA
1 TTTATCCGACTAGCGCTAG-GCACAAAACATTATCGA
20049970 TTTAT
1 TTTAT
20049975 TCAACTAGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (36 bp):
TTTATCCGACTAGCGCTAGGCACAAAACATTATCGA
Found at i:20050112 original size:76 final size:75
Alignment explanation
Indices: 20049930--20050131 Score: 242
Period size: 76 Copynumber: 2.6 Consensus size: 75
20049920 CAAAATATTA
* * * * *
20049930 TCGGTTTATCCGACTAGCGCTGAGCACAAAACATTATCGATTTATTCAACTAGTGCTGGGTACAC
1 TCGGTTTATCCGACTAGCGCTG-GCACAAAATATTGTTGGTTTATTCAACTAGTGCTGGGCACAC
*
20049995 ATTTGACATGG
65 ATTTGACATCG
* * * * *
20050006 TCAGTTTATCTGACTAGCACTGGGCACAAAATATTGTTGGTTTATTCGACTAGTGTTGGGCACAC
1 TCGGTTTATCCGACTAGCGCT-GGCACAAAATATTGTTGGTTTATTCAACTAGTGCTGGGCACAC
20050071 ATTTGACATCG
65 ATTTGACATCG
* *
20050082 TCGGTTTATCCGACTAGCGCTAGGCGCAAAATTTTGTTACGGTTTATTCA
1 TCGGTTTATCCGACTAGCGCT-GGCACAAAATATTGTT--GGTTTATTCA
20050132 TCAAGCACTG
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
76 95 0.90
77 1 0.01
78 9 0.09
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (75 bp):
TCGGTTTATCCGACTAGCGCTGGCACAAAATATTGTTGGTTTATTCAACTAGTGCTGGGCACACA
TTTGACATCG
Found at i:20058558 original size:28 final size:28
Alignment explanation
Indices: 20058526--20058580 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
20058516 AAATATTATC
20058526 AAAATTTACAAAAAGGAAATTGAATATG
1 AAAATTTACAAAAAGGAAATTGAATATG
* *
20058554 AAAATTTATAAAAAGTAAATTGAATAT
1 AAAATTTACAAAAAGGAAATTGAATAT
20058581 CCGAATAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (28 bp):
AAAATTTACAAAAAGGAAATTGAATATG
Found at i:20069957 original size:27 final size:27
Alignment explanation
Indices: 20069916--20069967 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
20069906 GAAGAATAGC
*
20069916 TGGTAATGAATTTGTGTTATCTGGTCT
1 TGGTAATGAAATTGTGTTATCTGGTCT
*
20069943 TGGTAATGAAATTGTGTTGTCTGGT
1 TGGTAATGAAATTGTGTTATCTGGT
20069968 TTTGATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.46
Consensus pattern (27 bp):
TGGTAATGAAATTGTGTTATCTGGTCT
Found at i:20071373 original size:22 final size:23
Alignment explanation
Indices: 20071332--20071374 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
20071322 ATCACCATTA
20071332 TTAAATATATTTATTTATTTAGT
1 TTAAATATATTTATTTATTTAGT
*
20071355 TTAAATATCTTT-TTTATTTA
1 TTAAATATATTTATTTATTTA
20071375 TCATAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
TTAAATATATTTATTTATTTAGT
Found at i:20071381 original size:22 final size:23
Alignment explanation
Indices: 20071333--20071382 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
20071323 TCACCATTAT
*
20071333 TAAATATATTTATTTATTTAGTT
1 TAAATATATTTATTTATTTAGTA
*
20071356 TAAATATCTTT-TTTATTTA-TCA
1 TAAATATATTTATTTATTTAGT-A
20071378 TAAAT
1 TAAAT
20071383 TACTATTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 13 0.54
23 10 0.42
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (23 bp):
TAAATATATTTATTTATTTAGTA
Found at i:20072116 original size:21 final size:21
Alignment explanation
Indices: 20072090--20072147 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
20072080 CTCCAAAACA
*
20072090 AGGGAAAATGGGTTACAATTT
1 AGGGAAAATGGCTTACAATTT
**
20072111 AGGGAAAATATCTTACAATTT
1 AGGGAAAATGGCTTACAATTT
*
20072132 AGGGAAAATGTCTTAC
1 AGGGAAAATGGCTTAC
20072148 CCTTTCAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (21 bp):
AGGGAAAATGGCTTACAATTT
Found at i:20072566 original size:20 final size:20
Alignment explanation
Indices: 20072541--20072580 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20072531 AATATTTTCT
*
20072541 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
20072561 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
20072581 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:20072583 original size:34 final size:35
Alignment explanation
Indices: 20072529--20072595 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
20072519 CAAACACCAG
* *
20072529 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
20072564 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
20072596 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:20074575 original size:27 final size:27
Alignment explanation
Indices: 20074544--20074599 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
20074534 GAAAATGATT
20074544 TTGGTTTGCGAAATTTGAGAAAACAGG
1 TTGGTTTGCGAAATTTGAGAAAACAGG
20074571 TTGGTTTGCGAAATTTGAGAAAACAGG
1 TTGGTTTGCGAAATTTGAGAAAACAGG
20074598 TT
1 TT
20074600 CGGGAGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (27 bp):
TTGGTTTGCGAAATTTGAGAAAACAGG
Found at i:20075905 original size:28 final size:26
Alignment explanation
Indices: 20075870--20075934 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 26
20075860 TTTAAAGCAC
*
20075870 AAAAGTATATATTAACATAAATATT-TTA
1 AAAAGTATATA--AAAATAAA-ATTGTTA
20075898 AAAAGTATCATAAAAATAAAATTGTTA
1 AAAAGTAT-ATAAAAATAAAATTGTTA
20075925 AAAA-TATATA
1 AAAAGTATATA
20075935 GATAATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
25 3 0.09
26 6 0.18
27 14 0.41
28 8 0.24
29 3 0.09
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (26 bp):
AAAAGTATATAAAAATAAAATTGTTA
Found at i:20077426 original size:44 final size:44
Alignment explanation
Indices: 20077371--20077803 Score: 551
Period size: 44 Copynumber: 9.8 Consensus size: 44
20077361 ATAAACTAAA
* ** * * * **
20077371 CTTCCACCTATTCTGCTGTTGGTTAGGGAGATAGGACTTGTAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* *
20077415 CTTCAACCTATTCCATTGCTGGTCAGGGAGATAGGACTTACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* * * * *
20077459 CTTCCATCTATTCTACTGCTGGTTAGGGAGATAGGACGTACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
*
20077503 CTTCAACCTATTCCATTGCTGGTCAGGGAGATAGGACATACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* * *
20077547 CTTCAACCTATTCTACTGTTGGTCAGGGAGATAGGGCATACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* *
20077591 CATCAACCTATTCCACTGCTGGTCAGGGAGATAGGACTTACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
*
20077635 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGCACATACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
20077679 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* * * * * * * **
20077723 ATTCCACATATTCCACTGCTGGTTAGAGAGATAGAACTTGTAAT
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
* * * *
20077767 CTTCGACCTATTCCAATACTGGTCAGGGATATAGGAC
1 CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGAC
20077804 TGGCAATCTT
Statistics
Matches: 338, Mismatches: 51, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 338 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTCAACCTATTCCACTGCTGGTCAGGGAGATAGGACATACAAT
Found at i:20077916 original size:43 final size:43
Alignment explanation
Indices: 20077863--20077998 Score: 130
Period size: 44 Copynumber: 3.1 Consensus size: 43
20077853 TATATTCAAC
20077863 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGAT
* *** * * * *
20077906 CTGCTTCGCTGTCAGTACAGGAAGGCAAGGTTTGCTATCTT-AAGT
1 CTGCTCCGCTG-CAACCCAGGGAGGCAAGGCTAG-TATCTTCGA-T
* * * *
20077951 CTGCTCCGCTACAACCGAGGGAGACAAGGCTGGTATCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGAT
20077994 CTGCT
1 CTGCT
20077999 TCACGTCGAT
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
43 22 0.31
44 32 0.46
45 16 0.23
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (43 bp):
CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGAT
Found at i:20077932 original size:44 final size:45
Alignment explanation
Indices: 20077809--20077935 Score: 114
Period size: 44 Copynumber: 2.9 Consensus size: 45
20077799 AGGACTGGCA
* * * ** *
20077809 ATCTTTGATCTGCTTCGTTGTCAGTACAAGAAGGCAAGATTCGTT
1 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTAGTT
* * * * *** *
20077854 ATATTCAACCTGCTCCGCTG-CAACCCAGGGAGGCAAGGCTAG-T
1 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTAGTT
20077897 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGG
1 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGG
20077936 TTTGCTATCT
Statistics
Matches: 59, Mismatches: 22, Indels: 3
0.70 0.26 0.04
Matches are distributed among these distances:
43 17 0.29
44 28 0.47
45 14 0.24
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (45 bp):
ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTAGTT
Found at i:20077958 original size:88 final size:87
Alignment explanation
Indices: 20077809--20078076 Score: 324
Period size: 88 Copynumber: 3.1 Consensus size: 87
20077799 AGGACTGGCA
* * * * * * *
20077809 ATCTTTGATCTGCTTCGTTGTCAGTACAAGAAGGCAAGATTCGTTATATTCAACCTGCTCCGCTG
1 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTT-AACCTGCTCCGCTA
* *
20077874 CAACCCAGGGAGGCAAGGCTAGT
65 CAACCGAGGGAGGCAAGGCTGGT
* *
20077897 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGGTTTGCTATCTTAAGTCTGCTCCGCTA
1 ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTAA-CCTGCTCCGCTA
*
20077962 CAACCGAGGGAGACAAGGCTGGT
65 CAACCGAGGGAGGCAAGGCTGGT
* * * * **
20077985 ATCTTCGATCTGCTTCAC-GTC-GATGCAGGAAGGCAAGATCTGCTATCTCCAACCTGCTCTACT
1 ATCTTCGATCTGCTTCGCTGTCAG-TACAGGAAGGCAAGATTTGCTATCT-TAACCTGCTCCGCT
20078048 ACAACCGAGGGAGGCAAGGCTGGT
64 ACAACCGAGGGAGGCAAGGCTGGT
20078072 ATCTT
1 ATCTT
20078077 TAACCTGCTC
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 1 0.01
87 63 0.40
88 92 0.59
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (87 bp):
ATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTAACCTGCTCCGCTAC
AACCGAGGGAGGCAAGGCTGGT
Found at i:20078063 original size:44 final size:44
Alignment explanation
Indices: 20078015--20078119 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 44
20078005 CGATGCAGGA
*
20078015 AGGCAAGATCTGCTATCTCCAACCTGCTCTACTACAACCGAGGG
1 AGGCAAGATCTGCTATCTCCAACCTGCTCCACTACAACCGAGGG
* * ** ** **
20078059 AGGCAAG-GCTGGTATCTTTAACCTGCTCCACTACTGCTTAGGG
1 AGGCAAGATCTGCTATCTCCAACCTGCTCCACTACAACCGAGGG
* *
20078102 AGGCCAGATCTGCCATCT
1 AGGCAAGATCTGCTATCT
20078120 TCACTGATCT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
43 33 0.70
44 14 0.30
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTCCAACCTGCTCCACTACAACCGAGGG
Done.