Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 76 of 230
Found at i:21022533 original size:64 final size:63
Alignment explanation
Indices: 21022418--21022573 Score: 183
Period size: 64 Copynumber: 2.5 Consensus size: 63
21022408 GCTTTACGGG
* * ** *
21022418 GGTTCGGTGGATGAGAATAGGGTCTTAGT-TTGAATATTGTTAAGTAAATTATGGA-TTTGTAGA
1 GGTTC-GTGGATGAGAATGGGGTTTTAGTATCAAATATTGTTAAGCAAATTAT-GACTTTGTAGA
* *
21022481 GGTTCAGTTGATGAGAATGGGGTTTTAGTATCAAATATTGTTAAGCAAATTATGACTTTGTGGA
1 GGTTC-GTGGATGAGAATGGGGTTTTAGTATCAAATATTGTTAAGCAAATTATGACTTTGTAGA
* *
21022545 GGTT-GTGGATGAGAACGGGGTTTCAGTAT
1 GGTTCGTGGATGAGAATGGGGTTTTAGTAT
21022574 AGGAAGAACA
Statistics
Matches: 80, Mismatches: 11, Indels: 5
0.83 0.11 0.05
Matches are distributed among these distances:
62 22 0.28
63 27 0.34
64 31 0.39
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.37
Consensus pattern (63 bp):
GGTTCGTGGATGAGAATGGGGTTTTAGTATCAAATATTGTTAAGCAAATTATGACTTTGTAGA
Found at i:21030393 original size:20 final size:20
Alignment explanation
Indices: 21030348--21030441 Score: 107
Period size: 20 Copynumber: 4.7 Consensus size: 20
21030338 CTCAGAGGGG
* *
21030348 CTTCTACCGATACAACTCCA
1 CTTCTACCCATACAAGTCCA
* *
21030368 CCTCTACCCATACAAGTACA
1 CTTCTACCCATACAAGTCCA
*
21030388 CTTCTACCCATTCAAGTCCA
1 CTTCTACCCATACAAGTCCA
* * *
21030408 TTTCTACCTATGCAAGTCCA
1 CTTCTACCCATACAAGTCCA
*
21030428 GTTCTACCCATACA
1 CTTCTACCCATACA
21030442 TCTTTTGAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.29, C:0.37, G:0.06, T:0.28
Consensus pattern (20 bp):
CTTCTACCCATACAAGTCCA
Found at i:21030857 original size:28 final size:29
Alignment explanation
Indices: 21030815--21030878 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
21030805 AAGTAGAGTG
* * *
21030815 TAAAAGGTTTCTAGTTGAGCCACAAAAGC
1 TAAAGGGTTTCTAGTTAAGCCACAAAAAC
*
21030844 TAAAGGGTTT-TAGTTAAGCCATAAAAAC
1 TAAAGGGTTTCTAGTTAAGCCACAAAAAC
*
21030872 TAGAGGG
1 TAAAGGG
21030879 AATGTTTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (29 bp):
TAAAGGGTTTCTAGTTAAGCCACAAAAAC
Found at i:21054164 original size:27 final size:27
Alignment explanation
Indices: 21054133--21054310 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21054123 TAAATTGTAC
21054133 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21054160 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21054186 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21054214 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21054242 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21054269 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21054296 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21054311 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21054247 original size:82 final size:81
Alignment explanation
Indices: 21054134--21054289 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21054124 AAATTGTACA
* *
21054134 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21054198 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21054215 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21054280 TGCGAGTTGA
65 TGCGAATTGA
21054290 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21054301 original size:82 final size:81
Alignment explanation
Indices: 21054130--21054310 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21054120 GATTAAATTG
* *
21054130 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21054195 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21054211 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21054275 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21054293 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21054311 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21062308 original size:27 final size:27
Alignment explanation
Indices: 21062277--21062454 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21062267 TAAATTGTAC
21062277 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21062304 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21062330 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21062358 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21062386 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21062413 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21062440 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21062455 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21062391 original size:82 final size:81
Alignment explanation
Indices: 21062278--21062433 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21062268 AAATTGTACA
* *
21062278 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21062342 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21062359 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21062424 TGCGAGTTGA
65 TGCGAATTGA
21062434 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21062445 original size:82 final size:81
Alignment explanation
Indices: 21062274--21062454 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21062264 GATTAAATTG
* *
21062274 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21062339 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21062355 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21062419 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21062437 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21062455 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21072511 original size:21 final size:20
Alignment explanation
Indices: 21072451--21072511 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
21072441 ATTCGTTTTG
21072451 ACCCTTATGGGTTTCTGTTCA
1 ACCCTTATGGGTTTC-GTTCA
* *
21072472 ACTCC-TATGAGCTTCCGTTCA
1 AC-CCTTATG-GGTTTCGTTCA
21072493 ACCCTTATGGGTTTTCGTT
1 ACCCTTATGGG-TTTCGTT
21072512 TAGCACTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
20 3 0.09
21 23 0.72
22 6 0.19
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (20 bp):
ACCCTTATGGGTTTCGTTCA
Found at i:21075931 original size:74 final size:73
Alignment explanation
Indices: 21075810--21075969 Score: 214
Period size: 74 Copynumber: 2.2 Consensus size: 73
21075800 TAATGAGTAT
* * *
21075810 GATTGAAAAGGTGTGTATATGAAATGAGTTATGGCATTGAGCTTATGAAATTTAAA-TTGTAATA
1 GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATG-AA-TGAAAGTTGTAATA
* *
21075874 TGTGTAAATG
64 TATATAAATG
* * *
21075884 GATTGAAAAGGTATGTATATGAAATGAGCTATGTCATTGAGTTTATGAATGAAAGTTGTGATATA
1 GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATGAATGAAAGTTGTAATATA
21075949 TATAAATG
66 TATAAATG
*
21075957 GTTTGAAAAGGTA
1 GATTGAAAAGGTA
21075970 ACTAATTGAT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
72 4 0.05
73 29 0.38
74 43 0.57
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.36
Consensus pattern (73 bp):
GATTGAAAAGGTATGTATATGAAATGAGCTATGGCATTGAGCTTATGAATGAAAGTTGTAATATA
TATAAATG
Found at i:21076221 original size:21 final size:22
Alignment explanation
Indices: 21076174--21076222 Score: 55
Period size: 26 Copynumber: 2.1 Consensus size: 22
21076164 TTATATGAGC
21076174 TTACTATACACTAGTTGCTTATGTAA
1 TTACTATACACTAGTTGC---T-TAA
21076200 TTACTATACACTAGTTGC-TAA
1 TTACTATACACTAGTTGCTTAA
21076221 TT
1 TT
21076223 TTGGCAAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.22
26 18 0.78
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (22 bp):
TTACTATACACTAGTTGCTTAA
Found at i:21078216 original size:138 final size:138
Alignment explanation
Indices: 21078041--21078311 Score: 366
Period size: 138 Copynumber: 2.0 Consensus size: 138
21078031 ATTTTCTTTC
* * * * * *
21078041 TTTTGATTATCAAGAGTTTCCAATTAGAATAAATTATTATAAGTATTATATTGAATAATTAATTC
1 TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
* * * * *
21078106 AATTCA-AACTAATTAATCAAAATATATATAATTGAAAATAAAATT-TGAGTATTCCTTAACTAG
66 AACT-ATAACTAACTAATCAAAACATATATAATCGAAAAT-AAATTCGGAGTATTCCTTAACTAG
21078169 CAAACTTGAA
129 CAAACTTGAA
* * * *
21078179 TTTTGAGTATCAAGAGTTTCCTATCAGAATCACTTATTATAAGTACTGGATTGAATAACTAACTC
1 TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
*
21078244 AACTATAACTAACTAATCAAAACATATATAATCGAAAATCAATTCGGAGTATTCCTTAACTAGCA
66 AACTATAACTAACTAATCAAAACATATATAATCGAAAATAAATTCGGAGTATTCCTTAACTAGCA
21078309 AAC
131 AAC
21078312 CTTAATACTT
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
137 5 0.04
138 110 0.96
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (138 bp):
TTTTGAGTATCAAGAGTTTCCAATCAGAATAAATTATTATAAGTACTAGATTGAATAACTAACTC
AACTATAACTAACTAATCAAAACATATATAATCGAAAATAAATTCGGAGTATTCCTTAACTAGCA
AACTTGAA
Found at i:21078626 original size:3 final size:3
Alignment explanation
Indices: 21078618--21078670 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
21078608 ATAAATACTA
21078618 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
21078666 TAT TA
1 TAT TA
21078671 GGGTTAGGGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:21079303 original size:22 final size:22
Alignment explanation
Indices: 21079278--21079324 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
21079268 TAGATCATAT
* *
21079278 TATAAAT-ATATTGTATTTATCA
1 TATAAATAAT-TTGTATCTAACA
21079300 TATAAATAATTTGTATCTAACA
1 TATAAATAATTTGTATCTAACA
21079322 TAT
1 TAT
21079325 TAGAAAAGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (22 bp):
TATAAATAATTTGTATCTAACA
Found at i:21082365 original size:24 final size:25
Alignment explanation
Indices: 21082337--21082396 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
21082327 CATTTTAAGT
21082337 TACTTTTTTACAAA-ATATTTTTTA
1 TACTTTTTTACAAATATATTTTTTA
* *
21082361 TACTTTTTTTATAAATTTATTTTTTA
1 TAC-TTTTTTACAAATATATTTTTTA
* *
21082387 AAATTTTTTA
1 TACTTTTTTA
21082397 TTACGGCTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 3 0.10
25 17 0.57
26 10 0.33
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (25 bp):
TACTTTTTTACAAATATATTTTTTA
Found at i:21082368 original size:25 final size:26
Alignment explanation
Indices: 21082340--21082395 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21082330 TTTAAGTTAC
* *
21082340 TTTTTTACAAA-ATATTTTTTATACT
1 TTTTTTACAAATATATTTTTTAAAAT
* *
21082365 TTTTTTATAAATTTATTTTTTAAAAT
1 TTTTTTACAAATATATTTTTTAAAAT
21082391 TTTTT
1 TTTTT
21082396 ATTACGGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTTTTACAAATATATTTTTTAAAAT
Found at i:21082994 original size:16 final size:16
Alignment explanation
Indices: 21082959--21083003 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
21082949 ATCTTTATTG
21082959 AATCCCTAAAATCTTCA
1 AATCCCT-AAATCTTCA
* *
21082976 AATCCCTAAATTTTGA
1 AATCCCTAAATCTTCA
21082992 AATCCCTAAATC
1 AATCCCTAAATC
21083004 GTTAGCATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.31
Consensus pattern (16 bp):
AATCCCTAAATCTTCA
Found at i:21086911 original size:27 final size:27
Alignment explanation
Indices: 21086881--21086962 Score: 64
Period size: 26 Copynumber: 3.1 Consensus size: 27
21086871 ACGTGCAGCA
21086881 GCAACATTATCCAGTCTATCTGATGTT
1 GCAACATTATCCAGTCTATCTGATGTT
* * * **
21086908 GCAAAATCA-CCAG-CATAT-TCAT-CA
1 GCAACATTATCCAGTC-TATCTGATGTT
* *
21086932 GCAACATTATCCACTCAATCTGATGTT
1 GCAACATTATCCAGTCTATCTGATGTT
21086959 GCAA
1 GCAA
21086963 AATCACTAGC
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
24 7 0.18
25 9 0.24
26 11 0.29
27 11 0.29
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (27 bp):
GCAACATTATCCAGTCTATCTGATGTT
Found at i:21086935 original size:51 final size:51
Alignment explanation
Indices: 21086879--21086985 Score: 187
Period size: 51 Copynumber: 2.1 Consensus size: 51
21086869 CTACGTGCAG
* *
21086879 CAGCAACATTATCCAGTCTATCTGATGTTGCAAAATCACCAGCATATTCAT
1 CAGCAACATTATCCACTCAATCTGATGTTGCAAAATCACCAGCATATTCAT
*
21086930 CAGCAACATTATCCACTCAATCTGATGTTGCAAAATCACTAGCATATTCAT
1 CAGCAACATTATCCACTCAATCTGATGTTGCAAAATCACCAGCATATTCAT
21086981 CAGCA
1 CAGCA
21086986 GCAACTTCAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (51 bp):
CAGCAACATTATCCACTCAATCTGATGTTGCAAAATCACCAGCATATTCAT
Found at i:21087722 original size:19 final size:19
Alignment explanation
Indices: 21087670--21087725 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
21087660 CTTTAACATC
21087670 TTTTCTAAGC-AAAAACAA
1 TTTTCTAAGCAAAAAACAA
* ** *
21087688 ATTTCTTTGAATAAAAACAA
1 TTTTCTAAGCA-AAAAACAA
21087708 TTTTCTAAGCAAAAAACA
1 TTTTCTAAGCAAAAAACA
21087726 TTAAAAAAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
18 6 0.21
19 7 0.25
20 15 0.54
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.30
Consensus pattern (19 bp):
TTTTCTAAGCAAAAAACAA
Found at i:21089317 original size:14 final size:14
Alignment explanation
Indices: 21089289--21089351 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
21089279 AATATATACG
*
21089289 TATATATATATAAA
1 TATATATATAAAAA
21089303 TATATATATAAAAA
1 TATATATATAAAAA
* * * *
21089317 TTTGTTAGAAAAAAA
1 TAT-ATATATAAAAA
* *
21089332 TATATAAATATAAA
1 TATATATATAAAAA
21089346 TATATA
1 TATATA
21089352 CATATATATA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 28 0.74
15 10 0.26
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
TATATATATAAAAA
Found at i:21097074 original size:43 final size:42
Alignment explanation
Indices: 21097017--21097240 Score: 222
Period size: 43 Copynumber: 5.3 Consensus size: 42
21097007 TTAGTGGAAG
*
21097017 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTCTCCTAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCTCC-AAAA
* *
21097060 CGCCGC-AATAGACCCTGATCTATAGCGGCGC-TTCGACCACAAAA
1 CGCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTC--TC-CAAAA
* * * *
21097104 CGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTC-CCCAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCTCCAAAA
* * *
21097145 -GCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCATAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCTCCA-AAA
* * **
21097187 CCCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAA
1 CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCTCC-AAAA
*
21097230 CGCCACTAAAG
1 CGCCGCTAAAG
21097241 GCCAACACCT
Statistics
Matches: 150, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
40 28 0.19
41 6 0.04
42 9 0.06
43 71 0.47
44 30 0.20
45 6 0.04
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (42 bp):
CGCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTCTCCAAAA
Found at i:21097138 original size:87 final size:83
Alignment explanation
Indices: 21097017--21097220 Score: 230
Period size: 83 Copynumber: 2.4 Consensus size: 83
21097007 TTAGTGGAAG
* * *
21097017 CGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTCTCCTAAAACGCCGC-AATAGACCCTGATCT
1 CGCCGCTAAAGACCCTAATCTTTAGCGGCGCTTTC-CC-AAAA-GCCGCTAA-AGACCATGATCT
21097081 ATAGCGGCGCTTCGACCACAAAA
62 ATAGCGGCGCTTCGACCA-AAAA
* * * *
21097104 CGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCCCCAAAGCCGCTAAAGACCATGATCTTTAG
1 CGCCGCTAAAGACCCTAATCTTTAGCGGCGCTTTCCCAAAAGCCGCTAAAGACCATGATCTATAG
* *** *
21097169 TGGCGCTTTTTCCATAAA
66 CGGCGCTTCGACCAAAAA
* *
21097187 CCCCGCTAAAGACCCTTATCTTTAGCGGCGCTTT
1 CGCCGCTAAAGACCCTAATCTTTAGCGGCGCTTT
21097221 GACCAAAAAC
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
83 33 0.33
84 29 0.29
85 5 0.05
86 2 0.02
87 31 0.31
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (83 bp):
CGCCGCTAAAGACCCTAATCTTTAGCGGCGCTTTCCCAAAAGCCGCTAAAGACCATGATCTATAG
CGGCGCTTCGACCAAAAA
Found at i:21097253 original size:43 final size:42
Alignment explanation
Indices: 21097077--21097259 Score: 138
Period size: 43 Copynumber: 4.3 Consensus size: 42
21097067 ATAGACCCTG
* * *
21097077 ATCTATAGCGGCGCTTCGACCACAAAACGCCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTGACCA-AAAACGCCACTAAAG-ACCAA
** * *
21097121 ATCTTTAGCGGCGCTTT--CCCCAAA-GCCGCTAAAGACCATG
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCA-A
* ** * * * **
21097161 ATCTTTAGTGGCGCTTTTTCCATAAACCCCGCTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGA-CCAA
*
21097204 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGGCCAA
1 ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
* *
21097246 CACCTTTAGTGGCG
1 -ATCTTTAGCGGCG
21097260 TTTTTTTAAA
Statistics
Matches: 109, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
39 3 0.03
40 25 0.23
41 3 0.03
42 9 0.08
43 52 0.48
44 17 0.16
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (42 bp):
ATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACCAA
Found at i:21097614 original size:21 final size:21
Alignment explanation
Indices: 21097584--21097676 Score: 107
Period size: 21 Copynumber: 4.4 Consensus size: 21
21097574 TTTGACGCTG
*
21097584 CTCTGTTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
21097605 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
21097626 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
21097647 CT-GGACTTCTCTAGCTGCCGC
1 CTCTG-CTTCCCTCGCTGCAGC
21097668 CTCTGCTTC
1 CTCTGCTTC
21097677 TCTTACTGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.05, C:0.43, G:0.18, T:0.33
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:21097685 original size:21 final size:21
Alignment explanation
Indices: 21097652--21097696 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
21097642 GCAGCCTGGA
*
21097652 CTTCTCTAGCTGCCGCCTCTG
1 CTTCTCTAGCTGCCGCATCTG
21097673 CTTCTCTTA-CTGCCGCATCTG
1 CTTCTC-TAGCTGCCGCATCTG
21097694 CTT
1 CTT
21097697 TAAGCTGCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.07, C:0.40, G:0.16, T:0.38
Consensus pattern (21 bp):
CTTCTCTAGCTGCCGCATCTG
Found at i:21097744 original size:66 final size:66
Alignment explanation
Indices: 21097667--21097812 Score: 188
Period size: 66 Copynumber: 2.2 Consensus size: 66
21097657 CTAGCTGCCG
* * *
21097667 CCTCTGCTTCTCTTACTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCACTGCCACATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
21097730 GAA
64 GAA
* * * * *
21097733 CCTCAGCTTCTCTCGCTGCTACATCTGCTTTTAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
21097798 A
66 A
21097799 CCTCAGCTTCTCTC
1 CCTCAGCTTCTCTC
21097813 GATGTTGCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
65 1 0.01
66 65 0.93
67 4 0.06
ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:21097813 original size:66 final size:66
Alignment explanation
Indices: 21097688--21097813 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
21097678 CTTACTGCCG
21097688 CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
1 CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
21097753 A
66 A
* * *
21097754 CATCTGCTTTTAGTTG-TAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCG
1 CATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCG
21097814 ATGTTGCCTC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
65 1 0.02
66 50 0.91
67 4 0.07
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.41
Consensus pattern (66 bp):
CATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGCT
A
Found at i:21097829 original size:66 final size:66
Alignment explanation
Indices: 21097688--21097836 Score: 185
Period size: 66 Copynumber: 2.3 Consensus size: 66
21097678 CTTACTGCCG
* * *
21097688 CATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGC
1 CATCCGCTTTAAGTTG-TAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGC
21097752 TA
65 TA
* * * *
21097754 CATCTGCTTTTAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGT
1 CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATGC
*
21097818 TG
65 TA
*
21097820 CCTCCGCTTTAAGTTGT
1 CATCCGCTTTAAGTTGT
21097837 GTAATTTGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
65 1 0.01
66 67 0.93
67 4 0.06
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.42
Consensus pattern (66 bp):
CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGCT
A
Found at i:21099739 original size:29 final size:29
Alignment explanation
Indices: 21099697--21099776 Score: 151
Period size: 29 Copynumber: 2.8 Consensus size: 29
21099687 AACCCTCATC
21099697 AGTGGTGTATTATGCAAGTTATTTATGTA
1 AGTGGTGTATTATGCAAGTTATTTATGTA
21099726 AGTGGTGTATTATGCAAGTTATTTATGTA
1 AGTGGTGTATTATGCAAGTTATTTATGTA
*
21099755 AGTGGTGTATTATGTAAGTTAT
1 AGTGGTGTATTATGCAAGTTAT
21099777 GTACGCTATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (29 bp):
AGTGGTGTATTATGCAAGTTATTTATGTA
Found at i:21099744 original size:16 final size:16
Alignment explanation
Indices: 21099697--21099773 Score: 76
Period size: 16 Copynumber: 5.2 Consensus size: 16
21099687 AACCCTCATC
*
21099697 AGTGGTGTATTATGCA
1 AGTGGTGTATTATGTA
*
21099713 AGT--TAT-TTATGTA
1 AGTGGTGTATTATGTA
*
21099726 AGTGGTGTATTATGCA
1 AGTGGTGTATTATGTA
*
21099742 AGT--TAT-TTATGTA
1 AGTGGTGTATTATGTA
21099755 AGTGGTGTATTATGTA
1 AGTGGTGTATTATGTA
21099771 AGT
1 AGT
21099774 TATGTACGCT
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
13 18 0.38
14 4 0.08
15 4 0.08
16 22 0.46
ACGTcount: A:0.27, C:0.03, G:0.26, T:0.44
Consensus pattern (16 bp):
AGTGGTGTATTATGTA
Found at i:21100604 original size:23 final size:25
Alignment explanation
Indices: 21100556--21100604 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
21100546 TTAAATATAT
* *
21100556 AAAAATTTTAAATATATATATATTA
1 AAAAATTATAAAAATATATATATTA
21100581 AAAAATTATAAAAATAT-TAT-TTA
1 AAAAATTATAAAAATATATATATTA
21100604 A
1 A
21100605 TGTAAGTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 4 0.18
24 3 0.14
25 15 0.68
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
AAAAATTATAAAAATATATATATTA
Found at i:21101272 original size:29 final size:29
Alignment explanation
Indices: 21101201--21101273 Score: 130
Period size: 28 Copynumber: 2.6 Consensus size: 29
21101191 GCAAATAAAT
*
21101201 CCTCACCGACAAAAAATTAAAAATTGAAA
1 CCTCACCGACAAAACATTAAAAATTGAAA
21101230 CCTCACCGA-AAAACATTAAAAATTGAAA
1 CCTCACCGACAAAACATTAAAAATTGAAA
21101258 CCTCACCGACAAAACA
1 CCTCACCGACAAAACA
21101274 AAAAAGAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
28 27 0.64
29 15 0.36
ACGTcount: A:0.52, C:0.26, G:0.07, T:0.15
Consensus pattern (29 bp):
CCTCACCGACAAAACATTAAAAATTGAAA
Found at i:21102586 original size:13 final size:13
Alignment explanation
Indices: 21102568--21102597 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21102558 AATTAGAAAA
*
21102568 TTTTTTATTTCAT
1 TTTTTTATTCCAT
21102581 TTTTTTATTCCAT
1 TTTTTTATTCCAT
21102594 TTTT
1 TTTT
21102598 ATTTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTATTCCAT
Found at i:21102614 original size:19 final size:19
Alignment explanation
Indices: 21102570--21102616 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
21102560 TTAGAAAATT
* *
21102570 TTTTA-TTTCATTTTTTTA
1 TTTTATTTTTATTTTTGTA
**
21102588 TTCCATTTTTATTTTTGTA
1 TTTTATTTTTATTTTTGTA
21102607 TTTTATTTTT
1 TTTTATTTTT
21102617 TCTTATAATT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTATTTTTATTTTTGTA
Found at i:21102989 original size:23 final size:23
Alignment explanation
Indices: 21102962--21103007 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
21102952 AACCCTAAAT
* *
21102962 CCCTAGCTCTTAACCCATAAACC
1 CCCTAACTCCTAACCCATAAACC
*
21102985 CCCTAACTCCTAACCCCTAAACC
1 CCCTAACTCCTAACCCATAAACC
21103008 TTAAACCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.48, G:0.02, T:0.20
Consensus pattern (23 bp):
CCCTAACTCCTAACCCATAAACC
Found at i:21103826 original size:41 final size:41
Alignment explanation
Indices: 21103767--21103920 Score: 211
Period size: 41 Copynumber: 3.8 Consensus size: 41
21103757 TAAAAAAAAT
* **
21103767 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTTAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGATCAGAGC
* **
21103808 ATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGATCAGAGC
* *
21103849 ATTACCGGCGCTTCTTCAAAAACGTCGCTAAAGGAT-AGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAA-GATCAGAGC
*
21103890 ATTAGCGGCGCTTCTTAAAAAACGCCGCTAA
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAA
21103921 GGGCCCCAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 97 0.99
42 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGATCAGAGC
Found at i:21104032 original size:39 final size:38
Alignment explanation
Indices: 21103962--21104035 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 38
21103952 TGGCTTAGGC
*
21103962 TTTTGCGGCGATTTTCAGAAAACGCCGCTAATGCTAAT
1 TTTTGCGGCGATTTTCAGAAAACGCCACTAATGCTAAT
* *
21104000 TTTTAGCGGCG-TTTTCTGTAAACCGCCACTAATGCT
1 TTTT-GCGGCGATTTTCAG-AAAACGCCACTAATGCT
21104036 CTACCTTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 10 0.32
39 21 0.68
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (38 bp):
TTTTGCGGCGATTTTCAGAAAACGCCACTAATGCTAAT
Found at i:21104085 original size:40 final size:39
Alignment explanation
Indices: 21103962--21104112 Score: 112
Period size: 40 Copynumber: 3.8 Consensus size: 39
21103952 TGGCTTAGGC
21103962 TTTT-GCGGCGATTTTCA-GAAAACGCCGCTAATGCT-AAT
1 TTTTAGCGGCG-TTTT-ATGAAAACGCCGCTAATGCTCAAT
* * * * *
21104000 TTTTAGCGGCGTTTTCTGTAAACCGCCACTAATGCTCTAC
1 TTTTAGCGGCGTTTTATG-AAAACGCCGCTAATGCTCAAT
* * *
21104040 CTTTAGCGGTGTATTTAT-AAAAGCGCCGCTAATGCTCGAT
1 TTTTAGCGGCGT-TTTATGAAAA-CGCCGCTAATGCTCAAT
* * *
21104080 TTTTAGTGGCGTTTTTTGTCCAAACGCCGCTAA
1 TTTTAGCGGCGTTTTATG--AAAACGCCGCTAA
21104113 AAATGCCGCT
Statistics
Matches: 87, Mismatches: 17, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
38 9 0.10
39 28 0.32
40 34 0.39
41 13 0.15
42 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (39 bp):
TTTTAGCGGCGTTTTATGAAAACGCCGCTAATGCTCAAT
Found at i:21105388 original size:47 final size:47
Alignment explanation
Indices: 21105329--21105426 Score: 196
Period size: 47 Copynumber: 2.1 Consensus size: 47
21105319 TTGTTTTTAC
21105329 ATATATTGCAATGATTTATTTATAAATAAATAAATCAAATTAAATAT
1 ATATATTGCAATGATTTATTTATAAATAAATAAATCAAATTAAATAT
21105376 ATATATTGCAATGATTTATTTATAAATAAATAAATCAAATTAAATAT
1 ATATATTGCAATGATTTATTTATAAATAAATAAATCAAATTAAATAT
21105423 ATAT
1 ATAT
21105427 TGCAAGGGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (47 bp):
ATATATTGCAATGATTTATTTATAAATAAATAAATCAAATTAAATAT
Found at i:21108136 original size:16 final size:16
Alignment explanation
Indices: 21108112--21108151 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
21108102 AAAATTAGAA
* *
21108112 ATATGTAAGCGTGTAT
1 ATATATAAGCATGTAT
*
21108128 ATATATAAGTATGTAT
1 ATATATAAGCATGTAT
21108144 ATATATAA
1 ATATATAA
21108152 AAAAAATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (16 bp):
ATATATAAGCATGTAT
Found at i:21109114 original size:98 final size:98
Alignment explanation
Indices: 21108920--21109119 Score: 271
Period size: 98 Copynumber: 2.0 Consensus size: 98
21108910 GGGAGATAAG
*
21108920 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCCATTCCAC
1 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCCACTCCAC
* *
21108985 TGCAACTTCAGGAAGATAGAATTATCGGCTTCA
66 TACAACTTCAGGAAGATAGAATTATCAGCTTCA
* * *
21109018 ATCTGATGTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCT-TTATTTTAATCCACTCCA
1 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTATGATTTTAATCCACTCCA
* * *
21109082 CTATAACTTCA-GAGAGTTAGGATTA-CTAGCTTCA
65 CTACAACTTCAGGA-AGATAGAATTATC-AGCTTCA
21109116 ATCT
1 ATCT
21109120 ACTCCGTTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
97 3 0.03
98 85 0.94
99 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (98 bp):
ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTATGATTTTAATCCACTCCAC
TACAACTTCAGGAAGATAGAATTATCAGCTTCA
Found at i:21109124 original size:44 final size:44
Alignment explanation
Indices: 21109028--21110668 Score: 227
Period size: 44 Copynumber: 37.8 Consensus size: 44
21109018 ATCTGATGTG
* * * * * *
21109028 ATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
* * *
21109072 ATCCACTCCACTATAACTTCAGAGAGTTAGGAT-TACTAGCTTCA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCT-CTAGCTTCA
** * *
21109116 ATCTACTCCGTTATAA-TATCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * * * * ** * *
21109160 ATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCT-CTA-GCTTCA
* * * * * * *
21109206 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCTTCA
* * * * * *
21109247 ATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * * ** **
21109291 ATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGT-GTCTTGG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * * * *
21109334 ATCTGCTCCGCTGTAA-TCTCAGAGAGATAAGATTTCTGGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
** * * * ** * *
21109378 ATCTGTTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCT-CTA-GCTTCA
* * * * * * * *
21109424 GTCTACTCTACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCTTCA
** * * * *
21109465 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATC-TCTAGCTTCA
* * * *
21109509 ATCCACTCCACTGTAA-TCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCT-CTAGCTTCA
* * * * * * * *
21109553 ATCTGCTCCGCTGTAATTTCAGGGAGATAAGA-C-CT-GATACG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCTTCA
* * * * *
21109594 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * *
21109638 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCT-CTAGCTTCA
* * * * * * * *
21109682 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATTTTTTA-TTTTA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGA-TCTCTAGCTTCA
* * * * ** **
21109726 ATCCACTCCACTGTAACTTCAGGGAGATAGGAT-AGT-GTCTTGG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * * * *
21109769 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * * * * * *
21109813 ATCTGCTCCGCTCTAA-TCTCAGGGAGATAAGA-C-CT-GATACG
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * * * * *
21109854 ATCTACTCTAATGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * ** **
21109898 ATCCGCTCCACTGTAACTTCA-AGGAGATAGGAT-AGT-GTCTTGG
1 ATCTACTCCACTATAACTTCAGA-GAGATAAGATCTCTAG-CTTCA
* * * * * * *
21109941 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATC-CGAAATTCTTCG
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTC--TA-GCTTCA
* * * * * *
21109987 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTA-ATGT-G
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCT-TCA
* * * * * *
21110028 ATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * ** **
21110072 ATCCGCTCCACTATAACTTCAGGGAGATAGGAT-AGT-GTCTTGG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAG-CTTCA
* * * * * *
21110115 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGA-C-CT-G-ATAA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * * * *
21110155 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 -ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * **
21110200 ATCCGCTCCACTGTAACTTCAGGGAGAT-AGAAT-AGT-GTCTT-A
1 ATCTACTCCACTATAACTTCAGAGAGATAAG-ATCTCTAG-CTTCA
* *
21110242 GATCTGCTCCACTATAA-TCTCAGGGAGATAAGATCTCTAGCTTCA
1 -ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * ** * *
21110287 ATCTGCTCCACTATAACCTCAGAGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCT-CTA-GCTTCA
* * * * * * * *
21110333 GTCTATTCCACTGTAGCTTCAGGGAGATAAGA-CT-T-GATGCG
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCTTCA
** ** * * * *
21110374 ATCTACT-TGCTGGAACTTCAAAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * * *
21110417 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGAT-TACTAGCTTTA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCT-CTAGCTTCA
* * * * * * *
21110461 ATCTGCTTCGCTGTAA-TCTCAGAGAGATAAGA-C-CT-GATACG
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCTCTAGCTTCA
* * * * * * *
21110502 ATCTACTCTACTGTAACTTTAAAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTATAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** * * *
21110546 ATCCGCTCCACTATAA-TCTCAGGGAGATAGGGT-TACTAGCTTCA
1 ATCTACTCCACTATAACT-TCAGAGAGATAAGATCT-CTAGCTTCA
* * * * *
21110590 ATCTGCTCCGCTGTAATCTT-AGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTATAA-CTTCAGAGAGATAAGATCTCTAGCTTCA
* * *
21110634 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT
1 ATCTACTCCACTATAACTTCAGAGAGATAAGATCT
21110669 GAAATTTTTC
Statistics
Matches: 1176, Mismatches: 313, Indels: 216
0.69 0.18 0.13
Matches are distributed among these distances:
40 19 0.02
41 207 0.18
42 31 0.03
43 179 0.15
44 592 0.50
45 21 0.02
46 127 0.11
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTACTCCACTATAACTTCAGAGAGATAAGATCTCTAGCTTCA
Found at i:21109257 original size:46 final size:45
Alignment explanation
Indices: 21109165--21109460 Score: 141
Period size: 46 Copynumber: 6.7 Consensus size: 45
21109155 CTTCAATCTG
* * *
21109165 CTCCACTGTAACCTCAGGGATATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTAC-GTCTA
* *
21109211 CTCCACTGTAACCTCAGGGAGATAAGACCTG--ATGCGA--TCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTACGTCTA
* * * * ** * * **
21109252 CTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTA-ATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTGAAATTCTACGTCTA
* * * ** *
21109296 CTCCACTGTAACTTCAGGGAGATAGGA--T--AGTGTCTTGGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAAT-TCTACG-TCTA
* * * * ** * *
21109339 CTCCGCTGTAATCTCAGAGAGATAAGATTTCTG-GCTTC-A-ATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGA--CCTGAAATTCTACGTCTA
* * *
21109383 TTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTAC-GTCTA
*
21109429 CTCTACTGTAACCTCAGGGAGATAAGACCTGA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGA
21109461 TGCGATCTAC
Statistics
Matches: 189, Mismatches: 45, Indels: 32
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.01
41 30 0.16
42 7 0.04
43 31 0.16
44 55 0.29
46 61 0.32
47 3 0.02
48 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGAAATTCTACGTCTA
Found at i:21109348 original size:87 final size:87
Alignment explanation
Indices: 21109211--21110492 Score: 597
Period size: 87 Copynumber: 14.8 Consensus size: 87
21109201 CTTCGGTCTA
* * * *
21109211 CTCCACTGTAACCTCAGGGAGATAAGA-CCTG--ATGCGATCTACTCTACTGTAA-CTTCAGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTACTCCACTGTAATC-TCAGAGA
*
21109272 GATGAGATCCTTTATTTTAATCCG
64 GATAAGATCCTTTATTTTAATCCG
* * * *
21109296 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGAGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGAGAGA
** * *
21109361 TAAGAT--TTCTGGCTTCAATCTG
66 TAAGATCCTT-T-ATTTTAATCCG
* * * *
21109383 TTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGG-TCTACTCTACTGTAACCTCAG
1 CTCCACTGTAACTTCAGGGAGATAAGATACTG----TCTT-GGATCTACTCCACTGTAATCTCAG
* * *** **
21109446 GGAGATAAGA-CC-TGA-TGCGATCTA
61 AGAGATAAGATCCTTTATTTTAATCCG
** * * * ** * *
21109470 CTCTGCTGTAACTTCAGAGAGATAAGAT-CATTTATTTTAATCCACTCCACTGTAATCTCAGGGA
1 CTCCACTGTAACTTCAGGGAGATAAGATAC-TGT-CTTGGATCTACTCCACTGTAATCTCAGAGA
* * * * *
21109534 GATAGGAT--TACTAGCTTCAATCTG
64 GATAAGATCCT-TTA-TTTTAATCCG
* * * * ** *
21109558 CTCCGCTGTAATTTCAGGGAGATAAGA-CCTG-ATACGATCTACTCTACTGTAA-CTTCAGAGAG
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATC-TCAGAGAG
21109620 ATAAGATCCTTTATTTTAATCCG
65 ATAAGATCCTTTATTTTAATCCG
* ** * * *
21109643 CTCCACTGTAA-TCTCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-TACT-GTCTTGGATCTACTCCACTGTAATCTCAGAG
** *
21109706 AGATAAGATTTTTTATTTTAATCCA
63 AGATAAGATCCTTTATTTTAATCCG
* * * * *
21109731 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGAGAGA
*** * *
21109796 TAAGAT-CTCTGGCTTCAATCTG
66 TAAGATCCT-TTATTTTAATCCG
* * * * ** * *
21109818 CTCCGCTCTAA-TCTCAGGGAGATAAGA-CCTG-ATACGATCTACTCTAATGTAA-CTTCAGAGA
1 CTCCACTGTAACT-TCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATC-TCAGAGA
21109879 GATAAGATCCTTTATTTTAATCCG
64 GATAAGATCCTTTATTTTAATCCG
* * * * * *
21109903 CTCCACTGTAACTTCAAGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGAGAGA
*** ** **
21109968 TAAGATCCGAAATTCTTCGGTCTA
66 TAAGATCCTTTATT-TT-AATCCG
* * *
21109992 CTCCACTGTAACCTCAGGGAGATAAGACCTAATG---T-GATCTACTCTACTGTAA-CTTCAGAG
1 CTCCACTGTAACTTCAGGGAGATAAGA--TACTGTCTTGGATCTACTCCACTGTAATC-TCAGAG
*
21110052 AGATGAGATCCTTTATTTTAATCCG
63 AGATAAGATCCTTTATTTTAATCCG
* * * * * *
21110077 CTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGAGAGA
* * **
21110142 TAAGA-CC-TGA--TAAGATCTA
66 TAAGATCCTTTATTTTA-ATCCG
* * * * * ** ** *
21110161 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGT-CTTGGATCTACTCCACTGTAATC-TCAGAGA
** * * *
21110225 GAT-AGAAT--AGTGTCTTAGATCTG
64 GATAAG-ATCCTTTATTTTA-ATCCG
* * ** * * *
21110248 CTCCACTATAA-TCTCAGGGAGATAAGAT-CTCTAGCTTCAATCTGCTCCACTATAACCTCAGAG
1 CTCCACTGTAACT-TCAGGGAGATAAGATACTGT--CTTGGATCTACTCCACTGTAATCTCAGAG
** ** **
21110311 AGATAAGAT-CTGAAATTCTTCGGTCTA
63 AGATAAGATCCT-TTATT-TT-AATCCG
* * ** ** * *
21110338 TTCCACTGTAGCTTCAGGGAGATAAG--ACT-TGATGCGATCTACT-TGCTGGAA-CTTCAAAGA
1 CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTG-GATCTACTCCACTGTAATC-TCAGAGA
21110398 GATAAGATCCTTTATTTTAATCCG
64 GATAAGATCCTTTATTTTAATCCG
* ** * * *
21110422 CTCCACTGTAA-TCTCAGGGAGATAGGATTACTAG-CTTTAATCTGCTTCGCTGTAATCTCAGAG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-TACT-GTCTTGGATCTACTCCACTGTAATCTCAGAG
21110485 AGATAAGA
63 AGATAAGA
21110493 CCTGATACGA
Statistics
Matches: 901, Mismatches: 217, Indels: 155
0.71 0.17 0.12
Matches are distributed among these distances:
83 7 0.01
84 59 0.07
85 229 0.25
86 50 0.06
87 328 0.36
88 132 0.15
89 32 0.04
90 57 0.06
91 7 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (87 bp):
CTCCACTGTAACTTCAGGGAGATAAGATACTGTCTTGGATCTACTCCACTGTAATCTCAGAGAGA
TAAGATCCTTTATTTTAATCCG
Found at i:21109422 original size:218 final size:219
Alignment explanation
Indices: 21109020--21109849 Score: 1018
Period size: 218 Copynumber: 3.8 Consensus size: 219
21109010 CGGCTTCAAT
* * *
21109020 CTGATGTGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTA
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG
* * * * * *
21109085 TAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTACTCCGTTATAATATCAGGGAGATAAGATC
66 TAACTTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
*
21109150 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGATATAAGATCTGAAATTCTTCGGTCTACTCC
131 TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
21109215 ACTGTAACCTCAGGGAGATAAGAC
196 ACTGTAACCTCAGGGAGATAAGAC
* *
21109239 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG
* ** *
21109304 TAACTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGAGAGATAAGAT
66 TAACTTCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
* *
21109367 TTCTGGCTTCAATCTGTTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTC
130 CTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTC
*
21109432 TACTGTAACCTCAGGGAGATAAGAC
195 CACTGTAACCTCAGGGAGATAAGAC
* *
21109457 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG
*
21109522 TAA-TCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATTTCAGGGAGATAAGA-
66 TAACT-TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
* * * * * * * ** ** **
21109585 C-CT-GATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AATCCGCT
130 CTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTACT
* * *
21109645 CCACTGTAATCTCAGGGAGATAGGATTA
194 CCACTGTAACCTCAGGGAGATAAGA--C
* * * * ** * **
21109673 CTAGCTTCAATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATTTTTTATTTTAATCCACTCCAC
1 CT-GATGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCCTTTATTTTAATCCACTCCAC
* **
21109737 TGTAACTTCAGGGAGATAGGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAG
64 TGTAACTTCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
* * * *
21109800 ATCTCTGGCTTCAATCTGCTCCGCTCTAATCTCAGGGAGATAAGACCTGA
128 ATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
21109850 TACGATCTAC
Statistics
Matches: 525, Mismatches: 71, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
214 26 0.05
215 3 0.01
216 74 0.14
217 77 0.15
218 203 0.39
219 141 0.27
220 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (219 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTG
TAACTTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
TCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCC
ACTGTAACCTCAGGGAGATAAGAC
Found at i:21110081 original size:174 final size:174
Alignment explanation
Indices: 21109692--21110492 Score: 787
Period size: 174 Copynumber: 4.6 Consensus size: 174
21109682 ATCTGCTCCG
* ** *
21109692 CTGTAA-TCTCAGGGAGATAAGATTTTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATAG
1 CTGTAACT-TCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
* *
21109756 GATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC----TGGCTTCAATCT
65 GATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC-CGAAAT-TCTTCGATCT
* * * * * *
21109817 GCTCCGCTCTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTA
128 ACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTA
* *
21109864 ATGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGG
1 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
*
21109929 ATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCGAAATTCTTCGGTCTACT
66 ATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCGAAATTCTTCGATCTACT
*
21109994 CCACTGTAACCTCAGGGAGATAAGACCTAATGTGATCTACTCTA
131 CCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTA
* *
21110038 CTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGG
1 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
21110103 ATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-CCTGATAA------GATCTA
66 ATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCC-GA-AATTCTTCGATCTA
* * * * *** ** *
21110161 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
129 CTCCACTGTAACCTCAGGGAGATAAGA-CC--TAATGCGATCTACTCTA
* ** * * * *
21110210 CTGTAACTTCAGGGAGAT-AGAAT--AGTGTCTTAGATCTGCTCCACTATAA-TCTCAGGGAGAT
1 CTGTAACTTCAGAGAGATAAG-ATCCTTTATTTTA-ATCCGCTCCACTGTAACT-TCAGGGAGAT
* * * ** * * * * * *
21110271 AAGAT-CTCTAGCTTCAATCTGCTCCACTATAACCTCAGAGAGATAAGATCTGAAATTCTTCGGT
63 AGGATAGTGT--CTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCGAAATTCTTCGAT
* * * * * *
21110335 CTATTCCACTGTAGCTTCAGGGAGATAAGACTTGATGCGATCTACT-TG
126 CTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTA
* *
21110383 CTGGAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-TCTCAGGGAGATAG
1 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCAGGGAGATAG
* ** * *
21110447 GATTACTAG-CTTTAATCTGCTTCGCTGTAATCTCAGAGAGATAAGA
65 GA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
21110493 CCTGATACGA
Statistics
Matches: 524, Mismatches: 77, Indels: 54
0.80 0.12 0.08
Matches are distributed among these distances:
169 29 0.06
170 10 0.02
171 34 0.06
172 166 0.32
173 21 0.04
174 224 0.43
175 9 0.02
176 3 0.01
177 28 0.05
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (174 bp):
CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
ATAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCGAAATTCTTCGATCTACT
CCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTA
Found at i:21110113 original size:346 final size:344
Alignment explanation
Indices: 21109434--21110684 Score: 1005
Period size: 346 Copynumber: 3.6 Consensus size: 344
21109424 GTCTACTCTA
* ** ** *
21109434 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCCACTCTAACTTCAGAGAGATAAGATC
* * ** * * * * * *
21109499 ATTTATTTTAATCCACTCCACTGTAA-TCTCAGGGAGATAGGATTACTAGCTTCA-ATCTGCTCC
66 CTTGATTACAATCCACTCCAATGTAACT-TCAGAGAGATA-GAATAGTATCTT-AGATCCGCTCC
* * * * * * * * * *
21109562 GCTGTAATTTCAGGGAGATAAGA-C-CTGA-TACGATCTACTCTACTGTAACTTCAGAGAGATAA
128 ACTATAATCTCAAGGAGATAAGATCTCT-ACTTCAATCTGCTCCACTATAACCTCAGAGAGATAA
*** ** ** * * * * * * *
21109624 GATCCTTTATT-TT-AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
192 GATCCGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA--CCTA-ATGCGATCTA
** * ** ** *
21109687 CTCCGCTGTAA-TCTCAGGGAGATAAGATTTTTTATTTTAATCCACTCCACTGTAACTTCAGGGA
254 CT-TACTGGAACT-TCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGA
21109751 GATAGGATAGTGTCTTGGATCTGCTCCG
317 GATAGGATAGTGTCTTGGATCTGCTCCG
* * * * *
21109779 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCA-ATCTGCTCCGCTCTAA-TCTCAGGGAGATA
1 CTGTAATCTCAGGGAGATAAGA-C-CT-G-ATAAGATCTACTCCACTCTAACT-TCAGAGAGATA
* * * ** *
21109842 AGA-CC-TGA-TACGATCTACTCTAATGTAACTTCAGAGAGATA-AGATCCTTTATTTTA-ATCC
61 AGATCCTTGATTACAATCCACTCCAATGTAACTTCAGAGAGATAGA-AT--AGTATCTTAGATCC
* * * * ** * * * *
21109902 GCTCCACTGTAA-CTTCAAGGAGATAGGATAGTGT-CTTGGATCTGCTCCGCTGTAATCTCAGGG
123 GCTCCACTATAATC-TCAAGGAGATAAGAT-CTCTACTTCAATCTGCTCCACTATAACCTCAGAG
*
21109965 AGATAAGATCCGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGTGAT
186 AGATAAGATCCGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGAT
* * * *
21110030 CTACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGG
251 CTACT-TACTGGAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGG
21110095 GAGATAGGATAGTGTCTTGGATCTGCTCCG
315 GAGATAGGATAGTGTCTTGGATCTGCTCCG
* *
21110125 CTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCCACTCTAACTTCAGAGAGATAAGATC
* ** * * * * *
21110190 CTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGAATAGTGTCTTAGATCTGCTCCACT
66 CTTGATTACAATCCACTCCAATGTAACTTCAGAGAGATAGAATAGTATCTTAGATCCGCTCCACT
*
21110255 ATAATCTCAGGGAGATAAGATCTCTAGCTTCAATCTGCTCCACTATAACCTCAGAGAGATAAGAT
131 ATAATCTCAAGGAGATAAGATCTCTA-CTTCAATCTGCTCCACTATAACCTCAGAGAGATAAGAT
* * * * * * *
21110320 CTGAAATTCTTCGGTCTATTCCACTGTAGCTTCAGGGAGATAAGACTTGATGCGATCTACTTGCT
195 CCGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTTACT
21110385 GGAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-TCTCAGGGAGATAGGA
260 GGAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCAGGGAGATAGGA
* ** *
21110449 TTACTAG-CTTTAATCTGCTTCG
324 -TAGT-GTCTTGGATCTGCTCCG
* * * * * *
21110471 CTGTAATCTCAGAGAGATAAGACCTGATACGATCTACTCTACTGTAACTTTAAAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCCACTCTAACTTCAGAGAGATAAGATC
* ** * * * * ** * * *
21110536 CTTTATTTTAATCCGCTCCACTATAA-TCTCAGGGAGATAGGGTTACTAGCTTCA-ATCTGCTCC
66 CTTGATTACAATCCACTCCAATGTAACT-TCAGAGAGATA-GAATAGTATCTT-AGATCCGCTCC
* * * * * *
21110599 GCTGTAATCTTAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGAGAGATAA
128 ACTATAATCTCAAGGAGATAAGATCTCT-ACTTCAATCTGCTCCACTATAACCTCAGAGAGATAA
* *
21110664 GATCTGAAATTTTTCGGTCTA
192 GATCCGAAATTCTTCGGTCTA
21110685 TTCCCTGGGG
Statistics
Matches: 748, Mismatches: 124, Indels: 66
0.80 0.13 0.07
Matches are distributed among these distances:
342 2 0.00
343 27 0.04
344 14 0.02
345 164 0.22
346 343 0.46
347 139 0.19
348 31 0.04
349 28 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (344 bp):
CTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCCACTCTAACTTCAGAGAGATAAGATC
CTTGATTACAATCCACTCCAATGTAACTTCAGAGAGATAGAATAGTATCTTAGATCCGCTCCACT
ATAATCTCAAGGAGATAAGATCTCTACTTCAATCTGCTCCACTATAACCTCAGAGAGATAAGATC
CGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTTACTG
GAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATA
GTGTCTTGGATCTGCTCCG
Found at i:21110146 original size:128 final size:128
Alignment explanation
Indices: 21109992--21110274 Score: 476
Period size: 128 Copynumber: 2.2 Consensus size: 128
21109982 CTTCGGTCTA
* ** *
21109992 CTCCACTGTAACCTCAGGGAGATAAGACCTAATGTGATCTACTCTACTGTAACTTCAGAGAGATG
1 CTCCACTGTAATCTCAGGGAGATAAGACCTAATAAGATCTACTCTACTGTAACTTCAGAGAGATA
* *
21110057 AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGAATAGTGTCTTAGATCTG
* *
21110120 CTCCGCTGTAATCTCAGGGAGATAAGACCTGATAAGATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCACTGTAATCTCAGGGAGATAAGACCTAATAAGATCTACTCTACTGTAACTTCAGAGAGATA
*
21110185 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGAATAGTGTCTTAGATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGAATAGTGTCTTAGATCTG
*
21110248 CTCCACTATAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
21110275 TCTCTAGCTT
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 144 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (128 bp):
CTCCACTGTAATCTCAGGGAGATAAGACCTAATAAGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGAATAGTGTCTTAGATCTG
Found at i:21110265 original size:43 final size:43
Alignment explanation
Indices: 21109295--21110319 Score: 321
Period size: 44 Copynumber: 23.7 Consensus size: 43
21109285 ATTTTAATCC
* *
21109295 GCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
* * ** *
21109338 GCTCCGCTGTAA-TCTCAGAGAGATAAGATTTCTGGCTTCA-ATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGA-TAGTGTCTT-AGATCT
* * * * *
21109382 GTTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTG----TCTTAGATCT
* * * ** * **
21109428 ACTCTACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
* ** * * * * *
21109469 ACTCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTA-ATCC
1 GCTCCACTGTAACTTCAGGGAGATAAGAT-A-GTGTCTTAGATCT
* * *
21109513 ACTCCACTGTAA-TCTCAGGGAGATAGGATTACTAG-CTTCA-ATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGA-TAGT-GTCTT-AGATCT
* * ** *
21109557 GCTCCGCTGTAATTTCAGGGAGATAAGA-CCTG--ATACGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTA-GATCT
* * * ** * * *
21109598 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA-ATCC
1 GCTCCACTGTAACTTCAGGGAGATAAGAT--AGTGTCTTAGATCT
* *
21109642 GCTCCACTGTAA-TCTCAGGGAGATAGGATTACTAG-CTTCA-ATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGA-TAGT-GTCTT-AGATCT
* ** * * *
21109686 GCTCCGCTGTAA-TCTCAGGGAGATAAGATTTTTTATTTTA-ATCC
1 GCTCCACTGTAACT-TCAGGGAGATAAGA--TAGTGTCTTAGATCT
* * *
21109730 ACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
* ** *
21109773 GCTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCA-ATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGAT-AGTGTCTT-AGATCT
* * ** *
21109817 GCTCCGCTCTAA-TCTCAGGGAGATAAGA-CCTG--ATACGATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGATAGTGTCTTA-GATCT
* * * * ** * * *
21109858 ACTCTAATGTAACTTCAGAGAGATAAGATCCTTTATTTTA-ATCC
1 GCTCCACTGTAACTTCAGGGAGATAAGAT--AGTGTCTTAGATCT
* * *
21109902 GCTCCACTGTAACTTCAAGGAGATAGGATAGTGTCTTGGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
* * * *
21109945 GCTCCGCTGTAA-TCTCAGGGAGATAAGATCCGAAAT-TCTTCGGTCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGAT----AGTGTCTTAGATCT
* * *
21109991 ACTCCACTGTAACCTCAGGGAGATAAGACCTAATG---T-GATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGA--TAGTGTCTTAGATCT
* * * * ** * * *
21110032 ACTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTA-ATCC
1 GCTCCACTGTAACTTCAGGGAGATAAGAT--AGTGTCTTAGATCT
* * *
21110076 GCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
* ** * *
21110119 GCTCCGCTGTAA-TCTCAGGGAGATAAGA-CCTG-ATAAGATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGATAGTGTCTTAGATCT
* * * ** * * *
21110160 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA-ATCC
1 GCTCCACTGTAACTTCAGGGAGATAAGAT--AGTGTCTTAGATCT
21110204 GCTCCACTGTAACTTCAGGGAGAT-AGAATAGTGTCTTAGATCT
1 GCTCCACTGTAACTTCAGGGAGATAAG-ATAGTGTCTTAGATCT
* * *
21110247 GCTCCACTATAA-TCTCAGGGAGATAAGAT-CTCTAGCTTCA-ATCT
1 GCTCCACTGTAACT-TCAGGGAGATAAGATAGTGT--CTT-AGATCT
* * *
21110291 GCTCCACTATAACCTCAGAGAGATAAGAT
1 GCTCCACTGTAACTTCAGGGAGATAAGAT
21110320 CTGAAATTCT
Statistics
Matches: 734, Mismatches: 172, Indels: 151
0.69 0.16 0.14
Matches are distributed among these distances:
39 3 0.00
40 2 0.00
41 140 0.19
42 38 0.05
43 140 0.19
44 325 0.44
45 13 0.02
46 70 0.10
47 2 0.00
48 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (43 bp):
GCTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTAGATCT
Found at i:21112805 original size:15 final size:16
Alignment explanation
Indices: 21112785--21112819 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
21112775 CTCCTTTTTC
21112785 TTTTCTTTTTCTCTT-
1 TTTTCTTTTTCTCTTA
21112800 TTTTCTTTTTCTCTTA
1 TTTTCTTTTTCTCTTA
21112816 TTTT
1 TTTT
21112820 TGACTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTCTCTTA
Found at i:21112888 original size:25 final size:26
Alignment explanation
Indices: 21112829--21112896 Score: 79
Period size: 25 Copynumber: 2.6 Consensus size: 26
21112819 TTGACTTTGA
*
21112829 TTGATTTTTCTTTTTTTGCTTTTGCTT
1 TTGATTTTTC-TTTTTTGCTTTTCCTT
21112856 TTGATTTTTCTTTTTT-CTTTTCCTT
1 TTGATTTTTCTTTTTTGCTTTTCCTT
21112881 CTT--TTTTTACTTTTTT
1 -TTGATTTTT-CTTTTTT
21112897 ATAGAATCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
24 5 0.13
25 15 0.39
26 8 0.21
27 10 0.26
ACGTcount: A:0.04, C:0.13, G:0.06, T:0.76
Consensus pattern (26 bp):
TTGATTTTTCTTTTTTGCTTTTCCTT
Found at i:21117365 original size:16 final size:16
Alignment explanation
Indices: 21117341--21117380 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
21117331 AAAATTAGAA
* *
21117341 ATATGTAAGCGTGTAT
1 ATATATAAGCATGTAT
*
21117357 ATATATAAGTATGTAT
1 ATATATAAGCATGTAT
21117373 ATATATAA
1 ATATATAA
21117381 CAAAATCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (16 bp):
ATATATAAGCATGTAT
Found at i:21117399 original size:23 final size:21
Alignment explanation
Indices: 21117373--21117415 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
21117363 AAGTATGTAT
*
21117373 ATATATAACAAAATCTAGAAA
1 ATATATAACAAAATCTAAAAA
21117394 ATATATAACAAAATCTAAAAA
1 ATATATAACAAAATCTAAAAA
21117415 A
1 A
21117416 CGATATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.23
Consensus pattern (21 bp):
ATATATAACAAAATCTAAAAA
Found at i:21121438 original size:4 final size:4
Alignment explanation
Indices: 21121429--21121486 Score: 107
Period size: 4 Copynumber: 14.5 Consensus size: 4
21121419 ATCCTTTTCT
*
21121429 CATA CATA CATA CATA CATG CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
21121477 CATA CATA CA
1 CATA CATA CA
21121487 CGCATGCATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:21123862 original size:21 final size:21
Alignment explanation
Indices: 21123837--21123891 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
21123827 GCTTTTGTGG
21123837 TTGTACTTGTTTTTGATGAAC
1 TTGTACTTGTTTTTGATGAAC
21123858 TTGTACTTGTTTTTGATGAAC
1 TTGTACTTGTTTTTGATGAAC
*
21123879 TTGAACTTGTTTT
1 TTGTACTTGTTTT
21123892 CGATTTTACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (21 bp):
TTGTACTTGTTTTTGATGAAC
Found at i:21123928 original size:7 final size:7
Alignment explanation
Indices: 21123918--21123943 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
21123908 ATCAAAATCC
21123918 AAAAATA
1 AAAAATA
21123925 AAAAATA
1 AAAAATA
21123932 AAAAATA
1 AAAAATA
21123939 AAAAA
1 AAAAA
21123944 AGACAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:21124900 original size:29 final size:29
Alignment explanation
Indices: 21124836--21124905 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
21124826 ACTACTAAAA
*
21124836 TAGTCACTTTTGTTTGACTCAAGTTACATTT
1 TAGTCACTTATGTTTGA--CAAGTTACATTT
*
21124867 TAGTCACTTATGTTTGA-AATGTTACGTTT
1 TAGTCACTTATGTTTGACAA-GTTACATTT
21124896 TAGTCACTTA
1 TAGTCACTTA
21124906 CGTTATCGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
28 2 0.06
29 18 0.50
31 16 0.44
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.47
Consensus pattern (29 bp):
TAGTCACTTATGTTTGACAAGTTACATTT
Found at i:21125860 original size:27 final size:27
Alignment explanation
Indices: 21125812--21125864 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
21125802 GGATTTGGTG
21125812 GTGCCTTCCTGAAAGGTGGCACCAGTT
1 GTGCCTTCCTGAAAGGTGGCACCAGTT
* *
21125839 GTGCCTTCTTGACAGGCT-GCACCAGT
1 GTGCCTTCCTGAAAGG-TGGCACCAGT
21125865 CTGATTAGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.26
Consensus pattern (27 bp):
GTGCCTTCCTGAAAGGTGGCACCAGTT
Found at i:21127472 original size:13 final size:13
Alignment explanation
Indices: 21127454--21127478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21127444 TTGGATCTGT
21127454 ACCAAAACAATCC
1 ACCAAAACAATCC
21127467 ACCAAAACAATC
1 ACCAAAACAATC
21127479 ATGAAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.36, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCC
Found at i:21128338 original size:42 final size:43
Alignment explanation
Indices: 21128238--21128402 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 43
21128228 AGCTCGTACA
* * * * *
21128238 ATGCCAACGTCCCAGA-CGAGGTCTTACATGTAATCAAATGTCG
1 ATGCCAACGTCCCAGATAGAGGTCTTACACGAAATCATAT-ACG
***
21128281 ATGCCATTATCCCAGATAG-GGTCTTACACGAAATCATATACG
1 ATGCCAACGTCCCAGATAGAGGTCTTACACGAAATCATATACG
* * * * *
21128323 ATGCCAATGTCCCAGACA-TGGTCTTACACGTAAATCTTAAATCG
1 ATGCCAACGTCCCAGATAGAGGTCTTACACG-AAATCATATA-CG
* *
21128367 ATGCCAACGTCCCAGAT-GTGGTCTTACACAAAATCA
1 ATGCCAACGTCCCAGATAGAGGTCTTACACGAAATCA
21128403 CATATCAGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.28
43 43 0.43
44 29 0.29
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATAGAGGTCTTACACGAAATCATATACG
Found at i:21128390 original size:86 final size:84
Alignment explanation
Indices: 21128238--21128402 Score: 201
Period size: 86 Copynumber: 1.9 Consensus size: 84
21128228 AGCTCGTACA
* **
21128238 ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAATGTCGATGCCATTATCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGAGGTCTTACACGTAATCAAA-GTCGATGCCAACATCCCAGATAGGGT
*
21128303 CTTACACGAAATCATATACG
65 CTTACACAAAATCATATACG
* *
21128323 ATGCCAATGTCCCAGAC-ATGGTCTTACACGTAAATCTTAAA-TCGATGCCAACGTCCCAGAT-G
1 ATGCCAACGTCCCAGACGA-GGTCTTACACGT-AATC--AAAGTCGATGCCAACATCCCAGATAG
21128385 TGGTCTTACACAAAATCA
62 -GGTCTTACACAAAATCA
21128403 CATATCAGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
84 1 0.01
85 28 0.41
86 37 0.54
88 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACGAGGTCTTACACGTAATCAAAGTCGATGCCAACATCCCAGATAGGGTC
TTACACAAAATCATATACG
Found at i:21129747 original size:22 final size:22
Alignment explanation
Indices: 21129722--21129775 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
21129712 AAACTGTTTA
*
21129722 GTATTTTTTTAATGATATTATT
1 GTATTTTATTAATGATATTATT
* **
21129744 GTATGTTATTAATTTTATTATT
1 GTATTTTATTAATGATATTATT
*
21129766 -TATTGTATTA
1 GTATTTTATTA
21129776 TATTTATGTG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (22 bp):
GTATTTTATTAATGATATTATT
Found at i:21133058 original size:51 final size:52
Alignment explanation
Indices: 21133003--21133119 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 52
21132993 TATAAAACTT
* *
21133003 ATATATATATATAAAATACA-TAATGCATTTATGAAAACAAGGAAA-ATATAA
1 ATATATATATATAAAATACATTAATGCATTTA-CAAAAAAAGGAAACATATAA
* * * *
21133054 ATATATACATATAAAATATATTCATGCATTTACAAAAAAATGAAACATATAA
1 ATATATATATATAAAATACATTAATGCATTTACAAAAAAAGGAAACATATAA
*
21133106 GTATA-ATATA-AAAA
1 ATATATATATATAAAA
21133120 CGTGGAAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 4 0.07
51 32 0.57
52 20 0.36
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (52 bp):
ATATATATATATAAAATACATTAATGCATTTACAAAAAAAGGAAACATATAA
Found at i:21133426 original size:9 final size:9
Alignment explanation
Indices: 21133390--21133425 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
21133380 AATATATAAT
21133390 ATAATAAAA
1 ATAATAAAA
21133399 ATAATAAAA
1 ATAATAAAA
*
21133408 ATAACAAAA
1 ATAATAAAA
*
21133417 TTAATAAAA
1 ATAATAAAA
21133426 TAGACTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (9 bp):
ATAATAAAA
Found at i:21133426 original size:17 final size:17
Alignment explanation
Indices: 21133380--21133427 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
21133370 TAGGTATAAT
* *
21133380 AATATATAATATAATAAA
1 AATA-ATAAAATAACAAA
21133398 AATAATAAAAATAACAAA
1 AATAAT-AAAATAACAAA
*
21133416 ATTAATAAAATA
1 AATAATAAAATA
21133428 GACTAAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
AATAATAAAATAACAAA
Found at i:21133670 original size:19 final size:21
Alignment explanation
Indices: 21133632--21133672 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
21133622 CCTTTTTTAA
*
21133632 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
21133653 AATCG-AAA-AAGAAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
21133672 A
1 A
21133673 GTAAGCCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 3 0.16
21 5 0.26
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:21133867 original size:23 final size:22
Alignment explanation
Indices: 21133839--21133881 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
21133829 AAATTAAATC
21133839 TCTAAGATTACAAAATCATATAT
1 TCTAAGATTAC-AAATCATATAT
*
21133862 TCTAAGATTACATATCATAT
1 TCTAAGATTACAAATCATAT
21133882 CTAAGATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATAT
Found at i:21133886 original size:19 final size:19
Alignment explanation
Indices: 21133839--21133915 Score: 91
Period size: 19 Copynumber: 3.8 Consensus size: 19
21133829 AAATTAAATC
*
21133839 TCTAAGATTACAAAATCATATA
1 TCTAAGATTAC-ATATC--ATA
21133861 TTCTAAGATTACATATCATA
1 -TCTAAGATTACATATCATA
*
21133881 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
21133900 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
21133916 CTCGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
20 3 0.06
22 4 0.08
23 11 0.21
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:21133925 original size:17 final size:18
Alignment explanation
Indices: 21133865--21133925 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
21133855 CATATATTCT
* *
21133865 AAGATTACATATCATATCT
1 AAGATTGCATATCA-ATCG
*
21133884 AAGATTGCATATCATATCT
1 AAGATTGCATATCA-ATCG
*
21133903 AAGATTGCATATC-CTCG
1 AAGATTGCATATCAATCG
21133920 AAGATT
1 AAGATT
21133926 ATGTTTCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
17 8 0.21
19 31 0.79
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (18 bp):
AAGATTGCATATCAATCG
Found at i:21134394 original size:128 final size:129
Alignment explanation
Indices: 21134206--21134450 Score: 298
Period size: 128 Copynumber: 1.9 Consensus size: 129
21134196 TTTGATGCGA
* * * * *
21134206 TCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTCTAATCCACTTCGCTACAACTTTAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTTCACTACAACTTCAG
* *
21134271 GGAGATAAGATT-T-GTTTATTTAGCCTGATCCACTGCAACTTCAGGGAGATAAGACTAGATGCA
66 GGAGATAAGATTATCG--GATTTAACCTGATCCACTGCAACTTCAGGGAGATAAGACTAGATGCA
21134334 T
129 T
** * * * *
21134335 TCTGCTCT-CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATTCGCTTCACTGCAACTTCAG
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTTCACTACAACTTCAG
* * * *
21134399 GGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
66 GGAGATAAGATTATCGGATTTAACCTGATCCACTGCAACTTCAGGGAGATAA
21134451 AATTTGCCAT
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 87 0.90
129 9 0.09
130 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (129 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTTCACTACAACTTCAG
GGAGATAAGATTATCGGATTTAACCTGATCCACTGCAACTTCAGGGAGATAAGACTAGATGCAT
Found at i:21134395 original size:44 final size:44
Alignment explanation
Indices: 21134299--21134450 Score: 145
Period size: 44 Copynumber: 3.5 Consensus size: 44
21134289 TTTAGCCTGA
* ** *
21134299 TCCACTGCAACTTCAGGGAGATAAGA-C-TA-GATGCATTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCTGC
* * *
21134340 T-CTCTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAAT-TCGC
1 TCCACTGCAACTTCAGGGAGATAAGAT-CATAGGCTTTAATCT-GC
* * * *
21134383 TTCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCTGC
21134427 TCCACTGCAACTTCAGGGAGATAA
1 TCCACTGCAACTTCAGGGAGATAA
21134451 AATTTGCCAT
Statistics
Matches: 89, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
40 22 0.25
41 1 0.01
42 3 0.03
43 8 0.09
44 54 0.61
45 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCTGC
Found at i:21134828 original size:44 final size:44
Alignment explanation
Indices: 21134756--21135131 Score: 401
Period size: 44 Copynumber: 8.7 Consensus size: 44
21134746 GTTATTTTCC
* * * * *
21134756 ACCTACTCCACTACT-ACTCAGAGAGATAGGGTTCACGATCTTCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCA
* * *
21134800 ACCTATTTCACTGTTGACCAGGGAGATAGGA-CCTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATCTTCA
* * * *
21134844 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* *
21134888 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCATAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* *
21134932 ACCTATTCCACTGCTGTCTAGGGAGATAGGATT--C--T-TT-A
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * *
21134970 ATCTATTCCACTGCT-ACCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGA-CCAGGGAGATAGGATTCACAATCTTCA
* * *
21135014 ACCTATTCCACTACTGACCAGTGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * * *
21135058 ACCTATTCCACTGTTGTCCAGGGAGATAGGATTCACAATATTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
** *
21135102 ACCTATAACACTGTTGACCAGGGAGATAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGG
21135132 GCTGGGGTCA
Statistics
Matches: 279, Mismatches: 42, Indels: 22
0.81 0.12 0.06
Matches are distributed among these distances:
38 29 0.10
39 2 0.01
40 2 0.01
42 1 0.00
43 3 0.01
44 238 0.85
45 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
Found at i:21135018 original size:126 final size:126
Alignment explanation
Indices: 21134756--21135091 Score: 467
Period size: 126 Copynumber: 2.6 Consensus size: 126
21134746 GTTATTTTCC
* * * * * * * *
21134756 ACCTACTCCACTACT-ACTCAGAGAGATAGGGTTCACGATCTTCAACCTATTTCACTGTTGACCA
1 ACCTATTCCACTACTGAC-CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCA
*
21134820 GGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCT
65 GGGAGATAGGA--T----TCTTCAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCT
21134885 TCA
124 TCA
* * *
21134888 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCATAATCTTTAACCTATTCCACTGCTGTCTAG
1 ACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
*
21134953 GGAGATAGGATTCTTTAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTTCA
66 GGAGATAGGATTCTTCAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTTCA
* *
21135014 ACCTATTCCACTACTGACCAGTGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAG
1 ACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
21135079 GGAGATAGGATTC
66 GGAGATAGGATTC
21135092 ACAATATTTA
Statistics
Matches: 185, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
126 121 0.65
130 1 0.01
132 61 0.33
133 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (126 bp):
ACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAG
GGAGATAGGATTCTTCAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCTTCA
Found at i:21135022 original size:170 final size:170
Alignment explanation
Indices: 21134817--21135131 Score: 452
Period size: 170 Copynumber: 1.9 Consensus size: 170
21134807 TCACTGTTGA
* * * * *
21134817 CCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAA
1 CCAGGGAGATAGAACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACAA
* * **
21134882 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCATAATCTTTAACCTATTCCACTGCT
66 TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATATTTAACCTATAACACTGCT
* *
21134947 GTCTAGGGAGATAGGATTCTTTAATCTATTCCACTGCTAC
131 GACCAGGGAGATAGGATTCTTTAATCTATTCCACTGCTAC
* * *
21134987 CCAGGGAGATAGAATTCT-CAATCTTCAACCTATTCCACTACTGACCAGTGAGATAGGATTCACA
1 CCAGGGAGATAGAA-CCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACA
* * * *
21135051 ATCTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGATTCACAATATTTAACCTATAACACTGT
65 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATATTTAACCTATAACACTGC
21135116 TGACCAGGGAGATAGG
130 TGACCAGGGAGATAGG
21135132 GCTGGGGTCA
Statistics
Matches: 126, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
170 124 0.98
171 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (170 bp):
CCAGGGAGATAGAACCTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGAATTCACAA
TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATATTTAACCTATAACACTGCT
GACCAGGGAGATAGGATTCTTTAATCTATTCCACTGCTAC
Found at i:21135211 original size:88 final size:88
Alignment explanation
Indices: 21135131--21135620 Score: 593
Period size: 88 Copynumber: 5.6 Consensus size: 88
21135121 AGGGAGATAG
* * * * * * *
21135131 GGCTGGGGTCATCAATCTACTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
* *
21135196 TCCATTGTAACCCAGGGAGGCAA
66 TCCACTGCAACCCAGGGAGGCAA
* * * * * *
21135219 AGCTGGTGTCTTCGATCTACTTCGCTGTCAGTGCTGGAAAGAAAGATCTGCTATTTTTAGCCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
21135284 TCCACTGCAACCCAGGGAGGCAA
66 TCCACTGCAACCCAGGGAGGCAA
* * * *
21135307 GGCTGGTGACTTCGATCTGCTTCGTTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTCAGCCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
* *
21135372 TCCGCTGCAACCCAAGGAGGCAA
66 TCCACTGCAACCCAGGGAGGCAA
* * * * * * *
21135395 GGCTGGTATCTTCGATCTGCTTCGCTGTAGGTGCAAGAAGGCAAGATTTACTATTTTCAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
*
21135460 TCCGCTGCAACCCAGGGAGGCAA
66 TCCACTGCAACCCAGGGAGGCAA
* * * *
21135483 GACTGGTGTCTTCGACCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
* * **
21135548 TCCGCTGCCACTAAGGGAGGCAA
66 TCCACTGCAACCCAGGGAGGCAA
* ** * **
21135571 GGCTAGTGTCTTCGATCTGCTTTACTGTCAGTATAGGAAGGCAAGATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
21135621 TTATCTTCAC
Statistics
Matches: 348, Mismatches: 54, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 348 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
TCCACTGCAACCCAGGGAGGCAA
Found at i:21135393 original size:44 final size:44
Alignment explanation
Indices: 21135343--21135555 Score: 137
Period size: 44 Copynumber: 4.8 Consensus size: 44
21135333 GTCAGTGCAG
21135343 GAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAA
1 GAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAA
* * * * * * * ***
21135387 GGAGGCAAG-GCTGGTATCTTC-GATCTGCTTCGCTGTAGGTGCAA
1 GAAGGCAAGATCTGCTATTTTCAG-CCTGCTCCGCTGCA-ACCCAA
* * * *
21135431 GAAGGCAAGATTTACTATTTTCAACCTGCTCCGCTGCAACCCAG
1 GAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAA
* * * * * ****
21135475 GGAGGCAAGA-CTGGTGTCTTC-GACCTGCTTCGCTGTCGGTGCAA
1 GAAGGCAAGATCTGCTATTTTCAG-CCTGCTCCGCTG-CAACCCAA
* *
21135519 GAAGGCAAGATCTGCTATTTTTAGCCTACTCCGCTGC
1 GAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGC
21135556 CACTAAGGGA
Statistics
Matches: 117, Mismatches: 44, Indels: 16
0.66 0.25 0.09
Matches are distributed among these distances:
42 1 0.01
43 37 0.32
44 43 0.37
45 35 0.30
46 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.26
Consensus pattern (44 bp):
GAAGGCAAGATCTGCTATTTTCAGCCTGCTCCGCTGCAACCCAA
Found at i:21137881 original size:25 final size:25
Alignment explanation
Indices: 21137829--21137881 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
21137819 AAGAAAATCC
*
21137829 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
21137854 AAAAGAATGAAA-AAT-ATTAGCTCA
1 AAAAGAATGAAAGAATAATTA-CTCA
21137878 AAAA
1 AAAA
21137882 TAAATGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 10 0.38
25 12 0.46
ACGTcount: A:0.62, C:0.06, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:21137887 original size:25 final size:23
Alignment explanation
Indices: 21137829--21137896 Score: 55
Period size: 25 Copynumber: 2.7 Consensus size: 23
21137819 AAGAAAATCC
* *
21137829 AAAAGAATGAAAGAATAATTATTCA
1 AAAAAAATGAAA-AAT-ATTACTCA
*
21137854 AAAAGAATGAAAAATATTAGCTCA
1 AAAAAAATGAAAAATATTA-CTCA
*
21137878 AAAATAAATGCAAAGATAT
1 AAAA-AAATG-AAAAATAT
21137897 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.11
24 10 0.27
25 16 0.43
26 7 0.19
ACGTcount: A:0.60, C:0.06, G:0.12, T:0.22
Consensus pattern (23 bp):
AAAAAAATGAAAAATATTACTCA
Found at i:21142134 original size:3 final size:3
Alignment explanation
Indices: 21142126--21142159 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
21142116 ATATGTAGGT
21142126 ATA ATA ATA ATA TATA AT- ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA A
21142160 CAAAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:21142140 original size:21 final size:18
Alignment explanation
Indices: 21142125--21142159 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
21142115 TATATGTAGG
21142125 TATAATAATAATATATAA
1 TATAATAATAATATATAA
21142143 TATAATAATAATA-ATAA
1 TATAATAATAATATATAA
21142160 CAAAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TATAATAATAATATATAA
Found at i:21142169 original size:21 final size:21
Alignment explanation
Indices: 21142126--21142175 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
21142116 ATATGTAGGT
* *
21142126 ATAATAATAATATATAATATA
1 ATAATAATAATACAAAATATA
21142147 ATAATAATAATAACAAAAT-TA
1 ATAATAATAAT-ACAAAATATA
21142168 ATAA-AATA
1 ATAATAATA
21142176 GACTAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 17 0.65
22 5 0.19
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAATAATAATACAAAATATA
Found at i:21142616 original size:23 final size:22
Alignment explanation
Indices: 21142573--21142630 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
21142563 AAAGGGTATC
* *
21142573 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
21142594 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
21142617 TACATATCATATCT
1 TACAAATCATATCT
21142631 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:21142633 original size:19 final size:19
Alignment explanation
Indices: 21142586--21142683 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
21142576 AAATTAAATC
*
21142586 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
21142606 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
21142628 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
21142649 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
21142668 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
21142684 CTCGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
19 33 0.48
21 18 0.26
22 7 0.10
23 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:21142646 original size:21 final size:21
Alignment explanation
Indices: 21142620--21142682 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
21142610 CTAAGATTAC
21142620 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
21142641 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
21142660 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
21142681 AT
1 AT
21142683 CCTCGAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:21143536 original size:7 final size:7
Alignment explanation
Indices: 21143526--21143552 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
21143516 TATATTTATT
21143526 TTTTAAA
1 TTTTAAA
21143533 TTTTAAA
1 TTTTAAA
21143540 TTTTAAA
1 TTTTAAA
21143547 TTTTAA
1 TTTTAA
21143553 TATTATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:21147651 original size:30 final size:29
Alignment explanation
Indices: 21147593--21147669 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 29
21147583 ACAAGACAAC
21147593 AGCAAAAAAAGAAGGAAGAAAAAGAAAAAA-AT
1 AGCAAAAAAA-AA-G-A-AAAAAGAAAAAAGAT
*
21147625 AGCAACAGAAAAAGAAAAAGAGAAAAAAGAT
1 AGCAA-AAAAAAAGAAAAA-AGAAAAAAGAT
21147656 AGCAAAAAAAAAGA
1 AGCAAAAAAAAAGA
21147670 GATGTATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
29 4 0.10
30 17 0.43
31 8 0.20
32 7 0.17
33 4 0.10
ACGTcount: A:0.74, C:0.05, G:0.18, T:0.03
Consensus pattern (29 bp):
AGCAAAAAAAAAGAAAAAAGAAAAAAGAT
Found at i:21150911 original size:37 final size:37
Alignment explanation
Indices: 21150856--21150960 Score: 151
Period size: 37 Copynumber: 2.8 Consensus size: 37
21150846 TGTTTTCTAT
* *
21150856 TGGACTAGCTCTTATGAGCATCT-GCTATGTTGTCGGG
1 TGGATTAGCTCTTATGAGCATCTGGC-ATGTTATCGGG
*
21150893 TGGATTAGCTCTTATGAGCATCTGGCGTGTTATCGGG
1 TGGATTAGCTCTTATGAGCATCTGGCATGTTATCGGG
21150930 TGGATTAGCTCTTATGAGCGAT-TGGCATGTT
1 TGGATTAGCTCTTATGAGC-ATCTGGCATGTT
21150961 TTGGTTGGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
37 58 0.94
38 4 0.06
ACGTcount: A:0.17, C:0.16, G:0.30, T:0.36
Consensus pattern (37 bp):
TGGATTAGCTCTTATGAGCATCTGGCATGTTATCGGG
Found at i:21151974 original size:25 final size:25
Alignment explanation
Indices: 21151912--21151974 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
21151902 CCTAACATAC
* * *
21151912 GGGCGTGTGACATAGCTTGGCACAT
1 GGGCGTCTGACACAGCCTGGCACAT
*
21151937 GGGCGTCTAACACAGCCTGGCACAT
1 GGGCGTCTGACACAGCCTGGCACAT
21151962 GGGCG-CATGACAC
1 GGGCGTC-TGACAC
21151975 GGTCTTGTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.22, C:0.27, G:0.33, T:0.17
Consensus pattern (25 bp):
GGGCGTCTGACACAGCCTGGCACAT
Found at i:21152750 original size:25 final size:25
Alignment explanation
Indices: 21152712--21152765 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
21152702 TCCATATCTT
* * *
21152712 GTGTGAGCATTTACAGTTATAGCTC
1 GTGTGAGCAATTACAATTACAGCTC
* *
21152737 GTGTGATCAATTACAATTACAGCTT
1 GTGTGAGCAATTACAATTACAGCTC
21152762 GTGT
1 GTGT
21152766 TAGTATTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (25 bp):
GTGTGAGCAATTACAATTACAGCTC
Found at i:21152835 original size:13 final size:13
Alignment explanation
Indices: 21152817--21152876 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
21152807 GATCAAGTGG
21152817 AAAATGAATATAT
1 AAAATGAATATAT
*
21152830 AAAATGATTATAT
1 AAAATGAATATAT
* *
21152843 -GAATCGATTATAT
1 AAAAT-GAATATAT
21152856 GGAAAATGAATATAT
1 --AAAATGAATATAT
21152871 AAAATG
1 AAAATG
21152877 GTAATATGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.08
13 26 0.67
15 7 0.18
16 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.32
Consensus pattern (13 bp):
AAAATGAATATAT
Found at i:21152859 original size:41 final size:41
Alignment explanation
Indices: 21152814--21152938 Score: 157
Period size: 41 Copynumber: 3.1 Consensus size: 41
21152804 GTTGATCAAG
21152814 TGGAAAATGAATATATAAAATGATTATATGAATCGATTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCGATTATA
* * *
21152855 TGGAAAATGAATATATAAAATGGTAATATGAAT-TAGTTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCGA-TTATA
** * *
21152896 TGG-AAATG-ATATATGGAATGATTATATAAATCGGTTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCGATTATA
21152935 TGGA
1 TGGA
21152939 TAGATATTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 26 0.37
40 6 0.08
41 39 0.55
ACGTcount: A:0.46, C:0.02, G:0.18, T:0.34
Consensus pattern (41 bp):
TGGAAAATGAATATATAAAATGATTATATGAATCGATTATA
Found at i:21153778 original size:22 final size:22
Alignment explanation
Indices: 21153750--21153795 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
21153740 AATTGGGTAT
21153750 TGAATTCATGGAATGGAAAGTG
1 TGAATTCATGGAATGGAAAGTG
*
21153772 TGAATTCATGGAATGGAAGGTG
1 TGAATTCATGGAATGGAAAGTG
21153794 TG
1 TG
21153796 GTTAACTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.04, G:0.35, T:0.28
Consensus pattern (22 bp):
TGAATTCATGGAATGGAAAGTG
Found at i:21154550 original size:22 final size:22
Alignment explanation
Indices: 21154524--21154567 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
21154514 GTTTAAACAT
21154524 ATTTCTTTTCCCGTCCCCCCAC
1 ATTTCTTTTCCCGTCCCCCCAC
21154546 ATTTCTTTTCCCGTCCCCCCAC
1 ATTTCTTTTCCCGTCCCCCCAC
21154568 TCCCAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.50, G:0.05, T:0.36
Consensus pattern (22 bp):
ATTTCTTTTCCCGTCCCCCCAC
Found at i:21154834 original size:20 final size:20
Alignment explanation
Indices: 21154809--21154849 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
21154799 AAGTTTGTTT
21154809 TATTTTTTCTTTCTCTGATA
1 TATTTTTTCTTTCTCTGATA
21154829 TATTTTTTCTTTCTCTGATA
1 TATTTTTTCTTTCTCTGATA
21154849 T
1 T
21154850 CCAGTACAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.66
Consensus pattern (20 bp):
TATTTTTTCTTTCTCTGATA
Found at i:21157983 original size:9 final size:9
Alignment explanation
Indices: 21157955--21157991 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
21157945 GGTTGCAAAA
21157955 AGGACGATG
1 AGGACGATG
*
21157964 ACGACGATG
1 AGGACGATG
21157973 AGGACGATG
1 AGGACGATG
*
21157982 AGGATGATG
1 AGGACGATG
21157991 A
1 A
21157992 TGTTTCTTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.41, T:0.14
Consensus pattern (9 bp):
AGGACGATG
Found at i:21160520 original size:26 final size:26
Alignment explanation
Indices: 21160484--21160535 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21160474 AGAAGATGAA
21160484 TTAGAAATCTTCTCTCTACTATCACG
1 TTAGAAATCTTCTCTCTACTATCACG
21160510 TTAGAAATCTTCTCTCTACTATCACG
1 TTAGAAATCTTCTCTCTACTATCACG
21160536 CTATCTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (26 bp):
TTAGAAATCTTCTCTCTACTATCACG
Found at i:21162311 original size:27 final size:27
Alignment explanation
Indices: 21162237--21162313 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
21162227 CTTCATCCCT
* * *
21162237 ATTTTACCCCTATTAAAA-ATTTAACG
1 ATTTTACCCTTATTAAAATTTTTAACA
** *
21162263 ATTTTACCCTTGA-TAATTTTTTTTACA
1 ATTTTACCCTT-ATTAAAATTTTTAACA
21162290 ATTTTACCCTTATTAAAATTTTTA
1 ATTTTACCCTTATTAAAATTTTTA
21162314 GAAAATATGT
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
26 14 0.36
27 25 0.64
ACGTcount: A:0.32, C:0.16, G:0.03, T:0.49
Consensus pattern (27 bp):
ATTTTACCCTTATTAAAATTTTTAACA
Found at i:21170620 original size:30 final size:30
Alignment explanation
Indices: 21170586--21170649 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
21170576 TTCCCATTTT
21170586 GATACATAAATTCCTCTTTTATATATAAAA
1 GATACATAAATTCCTCTTTTATATATAAAA
21170616 GATACATAAATTCCTCTTTTATATATAAAA
1 GATACATAAATTCCTCTTTTATATATAAAA
21170646 GATA
1 GATA
21170650 TAAATATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (30 bp):
GATACATAAATTCCTCTTTTATATATAAAA
Found at i:21172575 original size:55 final size:55
Alignment explanation
Indices: 21172509--21172618 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
21172499 AACCTTATGG
21172509 TTATTTGCTCAAAAATTTAAATATGCAAGGAATATATGGATTCTAGATAGTTTAA
1 TTATTTGCTCAAAAATTTAAATATGCAAGGAATATATGGATTCTAGATAGTTTAA
21172564 TTATTTGCTCAAAAATTTAAATATGCAAGGAATATATGGATTCTAGATAGTTTAA
1 TTATTTGCTCAAAAATTTAAATATGCAAGGAATATATGGATTCTAGATAGTTTAA
21172619 CCTAAGAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (55 bp):
TTATTTGCTCAAAAATTTAAATATGCAAGGAATATATGGATTCTAGATAGTTTAA
Found at i:21175168 original size:6 final size:6
Alignment explanation
Indices: 21175159--21175186 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21175149 TGATGAACTC
21175159 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
21175187 TCTTGAGCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:21177583 original size:59 final size:58
Alignment explanation
Indices: 21177490--21177639 Score: 212
Period size: 59 Copynumber: 2.6 Consensus size: 58
21177480 GTACTTGTGG
* *
21177490 CTTGTGA-TTGCGGTTGCTTTTAGTGCCCAAACAAATTCAATCCTTGACATGCTGGTT
1 CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
* * * *
21177547 CTTGTGACTTGTGGTTTACTTTTGGTGCCAAAACAAATTTAATCCTTGACATGCTGGTA
1 CTTGTGACTTGCGG-TTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
* *
21177606 GTTGTGGCTTGCGGTTGCTTTTAGTGCCAAAACA
1 CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACA
21177640 TAGCAACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
57 7 0.09
58 23 0.29
59 50 0.62
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (58 bp):
CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
Found at i:21177734 original size:26 final size:26
Alignment explanation
Indices: 21177681--21177736 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21177671 AATGTCACAC
* *
21177681 ATTTTGAAGCTTCATTTTCTTTGATT
1 ATTTTGAAGCTTCAATTTCTATGATT
*
21177707 ATTTTGAA-CTTCAATTTCATATGCTT
1 ATTTTGAAGCTTCAATTTC-TATGATT
21177733 ATTT
1 ATTT
21177737 CAGATGTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.55
Consensus pattern (26 bp):
ATTTTGAAGCTTCAATTTCTATGATT
Found at i:21178003 original size:15 final size:14
Alignment explanation
Indices: 21177983--21178017 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
21177973 TAAATGTTTA
*
21177983 AATTTTTAGTTTTTT
1 AATTTTTA-TTTTTG
21177998 AATTTTTATTTTTG
1 AATTTTTATTTTTG
21178012 AATTTT
1 AATTTT
21178018 AAGAATAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
AATTTTTATTTTTG
Found at i:21178262 original size:120 final size:120
Alignment explanation
Indices: 21178125--21178588 Score: 736
Period size: 120 Copynumber: 3.9 Consensus size: 120
21178115 GTAGTATTAT
*
21178125 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTTAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
* * * *
21178189 TATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
65 TATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATC
* *
21178245 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTACTAAATTATA
1 ATATATTATGATTTTAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
* * *
21178309 TATTTTTATTAAATTATATTTAAT-ATAATTATGTTAATTTATATTTTACAGTATC
65 TATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATC
* *
21178364 ATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
1 ATATATTATGATTTTAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
* *
21178429 AGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
66 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATC
* *
21178484 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
1 ATATATTATGATTTTAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
21178549 ATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
66 ATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
21178589 CTGATTAAAT
Statistics
Matches: 327, Mismatches: 14, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
118 4 0.01
119 104 0.32
120 214 0.65
121 5 0.02
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
ATATATTATGATTTTAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATC
Found at i:21178335 original size:25 final size:25
Alignment explanation
Indices: 21178306--21178354 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
21178296 TTACTAAATT
* *
21178306 ATATATTTTTATTAAATTATATTTA
1 ATATAATTATATTAAATTATATTTA
* *
21178331 ATATAATTATGTTAATTTATATTT
1 ATATAATTATATTAAATTATATTT
21178355 TACAGTATCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
ATATAATTATATTAAATTATATTTA
Found at i:21178425 original size:239 final size:240
Alignment explanation
Indices: 21178125--21178583 Score: 744
Period size: 239 Copynumber: 1.9 Consensus size: 240
21178115 GTAGTATTAT
* *
21178125 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
1 ATATATTATGATTTGAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
* * * * *
21178190 ATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATG
66 AGTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATATTATG
* * *
21178255 ATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTACTAAATTATATATTTTTATT
131 ATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTACTAAATTATATATTTTAATT
*
21178319 AAATTATATTTAAT-ATAATTATGTTAATTTATATTTTACAGTATC
195 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
*
21178364 ATATATTATGATTTGAGTAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTGAGAAAATTAATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATA
*
21178428 TAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
65 TAGTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATATTAT
* *
21178493 GATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
130 GATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTACTAAATTATATATTTTAATT
21178558 AAAATATATTTAATAATAATTATGTT
195 AAAATATATTTAATAATAATTATGTT
21178584 TAAATCTGAT
Statistics
Matches: 202, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
238 8 0.04
239 183 0.91
240 11 0.05
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (240 bp):
ATATATTATGATTTGAGAAAATTAATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
AGTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTACAGTATCATATATTATG
ATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTACTAAATTATATATTTTAATTA
AAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
Found at i:21178560 original size:18 final size:17
Alignment explanation
Indices: 21178532--21178566 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21178522 ATTATTAAGA
*
21178532 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
21178549 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
21178567 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:21178797 original size:44 final size:45
Alignment explanation
Indices: 21178732--21178822 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
21178722 ACCTCTATTC
* * *
21178732 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
21178776 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
21178821 CA
1 CA
21178823 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:21178824 original size:16 final size:16
Alignment explanation
Indices: 21178803--21178871 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
21178793 GATTAGCTAT
21178803 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21178819 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
21178836 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21178852 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21178868 TACA
1 TACA
21178872 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:21178845 original size:33 final size:32
Alignment explanation
Indices: 21178803--21178871 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
21178793 GATTAGCTAT
21178803 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
21178836 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
21178868 TACA
1 TACA
21178872 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:21182002 original size:85 final size:85
Alignment explanation
Indices: 21181908--21182078 Score: 281
Period size: 85 Copynumber: 2.0 Consensus size: 85
21181898 TCTCATGCTA
* *
21181908 ATTGATCATTTGCTCTTTACAATCCTTAAAAATTTCATCCTTAAATCA-CTACTTAATTTAATGA
1 ATTGATCATTTGCCCTTTACAATCCTTAAAAATTTCATCCTTAAATCATC-ACTTAATTTAATAA
*
21181972 AATTTTGATTTAGTCCCTCAT
65 AATTATGATTTAGTCCCTCAT
* *
21181993 ATTGATCATTTGCCCTTTATAATCCTTAAAAATTTCATCCTTAAATCATCATTTAATTTAATAAA
1 ATTGATCATTTGCCCTTTACAATCCTTAAAAATTTCATCCTTAAATCATCACTTAATTTAATAAA
21182058 ATTATGATTTAGTCCCTCAT
66 ATTATGATTTAGTCCCTCAT
21182078 A
1 A
21182079 ATTCTTTATT
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
85 79 0.99
86 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.43
Consensus pattern (85 bp):
ATTGATCATTTGCCCTTTACAATCCTTAAAAATTTCATCCTTAAATCATCACTTAATTTAATAAA
ATTATGATTTAGTCCCTCAT
Found at i:21183958 original size:47 final size:47
Alignment explanation
Indices: 21183889--21183981 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
21183879 AACCATATTT
21183889 AAAGTTTGGTTCCGGCACACGTCAGGCGCCACCCTTTCACTTTTCTA
1 AAAGTTTGGTTCCGGCACACGTCAGGCGCCACCCTTTCACTTTTCTA
21183936 AAAGTTTGGTTCCGGCACACGTCAGGCGCCACCCTTTCACTTTTCT
1 AAAGTTTGGTTCCGGCACACGTCAGGCGCCACCCTTTCACTTTTCT
21183982 TCTAGTAGCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.18, C:0.32, G:0.19, T:0.30
Consensus pattern (47 bp):
AAAGTTTGGTTCCGGCACACGTCAGGCGCCACCCTTTCACTTTTCTA
Found at i:21185442 original size:45 final size:44
Alignment explanation
Indices: 21185378--21185470 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
21185368 ATAGAACTGT
*
21185378 AATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAGACGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
21185423 AATGGAATAGA-ACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGAC-GTAATAGTATTCATGTGTTTGGTTGAATGG
21185467 AATG
1 AATG
21185471 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
43 1 0.02
44 24 0.55
45 19 0.43
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGACGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:21187357 original size:20 final size:20
Alignment explanation
Indices: 21187332--21187373 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
21187322 AACAAGGATG
21187332 AAAGCATTTGGAACCTTAAT
1 AAAGCATTTGGAACCTTAAT
21187352 AAAGCATTTGGAACCTTAAT
1 AAAGCATTTGGAACCTTAAT
21187372 AA
1 AA
21187374 TTATATCCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
AAAGCATTTGGAACCTTAAT
Found at i:21189109 original size:52 final size:51
Alignment explanation
Indices: 21189031--21189134 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 51
21189021 AATAGCGCCT
*
21189031 GAATGGATTCAGGCTGTAATACCATTACAGCCAACCAAATTAATGTTTGGTG
1 GAATGGATTCAGGCTGTAATACCATTACAGCCAA-CAAAATAATGTTTGGTG
21189083 GAATGGATTCAGGCTGTAATACCATTACAGCCAACAAAATAATGTTTGGTG
1 GAATGGATTCAGGCTGTAATACCATTACAGCCAACAAAATAATGTTTGGTG
21189134 G
1 G
21189135 TGGGCCCACC
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 17 0.33
52 34 0.67
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (51 bp):
GAATGGATTCAGGCTGTAATACCATTACAGCCAACAAAATAATGTTTGGTG
Found at i:21190716 original size:46 final size:47
Alignment explanation
Indices: 21190635--21190725 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 47
21190625 ATCATGTCAA
21190635 ATATGGTTCGGTACTTCTTCGAATTGACCTTCAGTGGGTTTAATCAC
1 ATATGGTTCGGTACTTCTTCGAATTGACCTTCAGTGGGTTTAATCAC
21190682 ATATGGTTCGGTACTTC-TCGAATTGACCTTCAGTGGGTTTAATC
1 ATATGGTTCGGTACTTCTTCGAATTGACCTTCAGTGGGTTTAATC
21190726 GTGTCTATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 27 0.61
47 17 0.39
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (47 bp):
ATATGGTTCGGTACTTCTTCGAATTGACCTTCAGTGGGTTTAATCAC
Found at i:21193492 original size:27 final size:27
Alignment explanation
Indices: 21193454--21193506 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
21193444 AACTGAGAAG
*
21193454 TGAATAGAAAGCACAGAATATTCTATT
1 TGAATAGAAAGCACAGAATATGCTATT
*
21193481 TGAATAGAAAGCACCGAATATGCTAT
1 TGAATAGAAAGCACAGAATATGCTAT
21193507 AGTTTCAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.26
Consensus pattern (27 bp):
TGAATAGAAAGCACAGAATATGCTATT
Found at i:21194523 original size:16 final size:18
Alignment explanation
Indices: 21194484--21194517 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21194474 TAAGTTTATG
21194484 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
21194501 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
21194518 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Done.