Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 82 of 230
Found at i:22724907 original size:18 final size:18
Alignment explanation
Indices: 22724865--22724914 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
22724855 AGGTGTAGAT
*
22724865 GAGGAAAAAGATGCGATC
1 GAGGAAGAAGATGCGATC
* *
22724883 GAGGAAGAAGATGTGGTC
1 GAGGAAGAAGATGCGATC
*
22724901 GAGGAAGAATATGC
1 GAGGAAGAAGATGC
22724915 AAGTGAGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.38, T:0.14
Consensus pattern (18 bp):
GAGGAAGAAGATGCGATC
Found at i:22732827 original size:25 final size:25
Alignment explanation
Indices: 22732789--22732855 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
22732779 ACAAATAAAA
22732789 ACCCAAAATC-AGCCCAACACCCCAC
1 ACCCAAAA-CAAGCCCAACACCCCAC
*
22732814 ACCCAAAACAAGCCCAACACCTCAC
1 ACCCAAAACAAGCCCAACACCCCAC
22732839 ACCCAAAACAAGCCCAA
1 ACCCAAAACAAGCCCAA
22732856 GTTAACCCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.45, C:0.48, G:0.04, T:0.03
Consensus pattern (25 bp):
ACCCAAAACAAGCCCAACACCCCAC
Found at i:22738452 original size:24 final size:23
Alignment explanation
Indices: 22738386--22738472 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 23
22738376 TGGTTATTCG
* *
22738386 GAGCTTCTTGATTAATGGCTCTTC
1 GAGCTTCCTGATT-ATGGCTCTAC
* *
22738410 GGAGCTACC-CATTATTGGCTCGTAC
1 -GAGCTTCCTGATTA-TGGCTC-TAC
*
22738435 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCCTGATTATGGCTC-TAC
22738459 GAGCTTCCTG-TTAT
1 GAGCTTCCTGATTAT
22738473 ACAGCCCGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.10
24 34 0.67
25 12 0.24
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (23 bp):
GAGCTTCCTGATTATGGCTCTAC
Found at i:22740275 original size:20 final size:20
Alignment explanation
Indices: 22740239--22740277 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
22740229 TTATAATGAC
*
22740239 AAAAAAATATTTTAATTTAT
1 AAAAAAATATTTAAATTTAT
22740259 AAAAAAACT-TTTAAATTTA
1 AAAAAAA-TATTTAAATTTA
22740278 ACTTGATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAAAATATTTAAATTTAT
Found at i:22741125 original size:18 final size:18
Alignment explanation
Indices: 22741099--22741142 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
22741089 TTAAAATTTG
*
22741099 AAAAGAAGTATAAGCATA
1 AAAAAAAGTATAAGCATA
*
22741117 AAAAAAAGTGTAAGCATA
1 AAAAAAAGTATAAGCATA
22741135 AAATAAAA
1 AAA-AAAA
22741143 AATAATTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.66, C:0.05, G:0.14, T:0.16
Consensus pattern (18 bp):
AAAAAAAGTATAAGCATA
Found at i:22744774 original size:69 final size:69
Alignment explanation
Indices: 22744690--22744830 Score: 203
Period size: 69 Copynumber: 2.0 Consensus size: 69
22744680 TTCCCTTCCT
* *
22744690 GAGGATTCCATCACAAAGAAGGTCTGTTTCAAGGAATC-GAACGTGAACCTTGAAGATGTGATGG
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAG-ACGTGAACCTTGAAGATGTAATGG
*
22744754 TTGTG
65 TCGTG
* * **
22744759 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAGACGTGAACCTTGAAGATGTAATGGT
22744824 CGTG
66 CGTG
22744828 GAG
1 GAG
22744831 TCATCACCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
69 63 0.98
70 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (69 bp):
GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCAGACGTGAACCTTGAAGATGTAATGGT
CGTG
Found at i:22745179 original size:69 final size:69
Alignment explanation
Indices: 22745095--22745235 Score: 210
Period size: 69 Copynumber: 2.0 Consensus size: 69
22745085 TTCTCTTACT
* *
22745095 GAGGATTCCATCACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTGATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
*
22745160 TGTG
66 CGTG
* * * * *
22745164 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGACTCGGATGTGATTCTTGAAGATGTAATGGT
1 GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
22745229 CGTG
66 CGTG
22745233 GAG
1 GAG
22745236 TCATCACCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (69 bp):
GAGGATTCCAACACAAAGAAGGTCTGTTTCAAGGAATCGAACGTGAATCTTAAAGATGTAATGGT
CGTG
Found at i:22745273 original size:405 final size:405
Alignment explanation
Indices: 22744522--22745336 Score: 1513
Period size: 405 Copynumber: 2.0 Consensus size: 405
22744512 ATGTCAACAA
22744522 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
1 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
* * *
22744587 TGGCTCACTTGGGTGTTAAATTCCGTTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
66 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
* *
22744652 CTAATGTGGACAATAATGGAGAAGGTGATTCCCTTCCTGAGGATTCCATCACAAAGAAGGTCTGT
131 CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
*
22744717 TTCAAGGAATCGAACGTGAACCTTGAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
196 TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
22744782 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
261 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
* * *
22744847 CTTTTTCTTGAAAAGATATGCTAGTGGGGAAGGATACTCCTGTGCAGAATAATACAAATAATGGG
326 CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
22744912 CACTTCCTTGTTGAT
391 CACTTCCTTGTTGAT
22744927 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
1 AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
22744992 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
66 TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
*
22745057 CTAATGTGGACAATAATGGAGAAAGTGATTCTCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
131 CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
*
22745122 TTCAAGGAATCGAACGTGAATCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
196 TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
*
22745187 CTGTTTCAAGGACTCGGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
261 CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
*
22745252 TTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
326 CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
22745317 CACTTCCTTGTTGAT
391 CACTTCCTTGTTGAT
22745332 AATTT
1 AATTT
22745337 TTCCCTCACT
Statistics
Matches: 397, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
405 397 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (405 bp):
AATTTAATGGTCAAACTCGGTCAACATTAACGAAGGGGATTAATTGATTAAATTTTCATCTTTAA
TGGCTCACTAGGGAGTTAAATTCCATTGAGGGCAATTCTGAAAATGCTCTCGTCTTCTTCGGTTT
CTAATGTGGACAATAATGGAGAAAGTGATTCCCTTACTGAGGATTCCATCACAAAGAAGGTCTGT
TTCAAGGAATCGAACGTGAACCTTAAAGATGTGATGGTTGTGGAGGATTCCAACACAAAGAAGGT
CTGTTTCAAGGACTCAGATGTGATTCTTGAAGATGTAATGGTCGTGGAGTCATCACCAACGCCTT
CTTTTTCTTGAAAAGATATGCTAGCGGGGAAGGATACTCCTGTGCAAAATAATACAAATAATGGC
CACTTCCTTGTTGAT
Found at i:22751456 original size:12 final size:12
Alignment explanation
Indices: 22751439--22751485 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
22751429 TTTAATTTTC
22751439 AAATTTTAAAAA
1 AAATTTTAAAAA
22751451 AAA-TTTAAAAA
1 AAATTTTAAAAA
*
22751462 AGATTTT-AAAA
1 AAATTTTAAAAA
**
22751473 TTATTTTAAAAA
1 AAATTTTAAAAA
22751485 A
1 A
22751486 TTATAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
AAATTTTAAAAA
Found at i:22751483 original size:21 final size:22
Alignment explanation
Indices: 22751439--22751505 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
22751429 TTTAATTTTC
* **
22751439 AAATTTTAAAAAAAATTTAAAA
1 AAATTATAAAAATTATTTAAAA
* *
22751461 AAGATT-TTAAAATTATTTTAAA
1 AA-ATTATAAAAATTATTTAAAA
22751483 AAATTATAAAAATTATTTAAAA
1 AAATTATAAAAATTATTTAAAA
22751505 A
1 A
22751506 TATAAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 3 0.08
22 31 0.84
23 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (22 bp):
AAATTATAAAAATTATTTAAAA
Found at i:22751506 original size:11 final size:11
Alignment explanation
Indices: 22751443--22751506 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
22751433 ATTTTCAAAT
**
22751443 TTTAAAAAAAA
1 TTTAAAAATTA
**
22751454 TTTAAAAAAGA
1 TTTAAAAATTA
*
22751465 TTTTAAAATTA
1 TTTAAAAATTA
22751476 TTTTAAAAA--A
1 -TTTAAAAATTA
22751486 TTATAAAAATTA
1 TT-TAAAAATTA
22751498 TTTAAAAAT
1 TTTAAAAAT
22751507 ATAAAATTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.05
10 7 0.16
11 25 0.57
12 10 0.23
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
TTTAAAAATTA
Found at i:22753226 original size:25 final size:25
Alignment explanation
Indices: 22753199--22753246 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22753189 ATTTAATTAT
*
22753199 TTTTA-ATCTATATATATATATTTC
1 TTTTATATCTAAATATATATATTTC
*
22753223 TTTTATATGTAAATATATATATTT
1 TTTTATATCTAAATATATATATTT
22753247 TTAATGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTATATCTAAATATATATATTTC
Found at i:22755378 original size:18 final size:17
Alignment explanation
Indices: 22755348--22755381 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22755338 ATAATTGTAA
*
22755348 TTTAAATTTTAATTATT
1 TTTAAATTGTAATTATT
22755365 TTTAAATATGTAATTAT
1 TTTAAAT-TGTAATTAT
22755382 CACAATTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTAAATTGTAATTATT
Found at i:22755769 original size:15 final size:15
Alignment explanation
Indices: 22755749--22755781 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22755739 TACCCGTTTC
22755749 ATTAAT-TTTTATATA
1 ATTAATATTTTA-ATA
22755764 ATTAATATTTTAATA
1 ATTAATATTTTAATA
22755779 ATT
1 ATT
22755782 CAATCGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTAATATTTTAATA
Found at i:22762460 original size:41 final size:40
Alignment explanation
Indices: 22762331--22762473 Score: 135
Period size: 41 Copynumber: 3.5 Consensus size: 40
22762321 AATAATAATG
* * * *
22762331 AATTGCAAATACGTACCCTTCTTTGTACTTCGGTACCCTT
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
* * * *
22762371 GAAATAG-ACATACGTGCCTCTATTTGTAATTCGGTACCCCTG
1 --AATTGCACATACGTGCCCCTATTTGTACTTCGGTA-CCCTT
* * *
22762413 AATTGCACATATGTGCCCCTATTTGTACTTTGGTACCATT
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
*
22762453 AACTTGCACATACATGCCCCT
1 AA-TTGCACATACGTGCCCCT
22762474 GTTTAGACTT
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 9 0.11
41 64 0.79
42 8 0.10
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (40 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTT
Found at i:22768799 original size:11 final size:10
Alignment explanation
Indices: 22768783--22768825 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
22768773 CATTAAAATT
*
22768783 TAAAATAAAT
1 TAAAATAAAA
22768793 TATAAATAAAA
1 TA-AAATAAAA
22768804 TAAAATAAAA
1 TAAAATAAAA
22768814 TAAAAATAAAA
1 T-AAAATAAAA
22768825 T
1 T
22768826 TCAATTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 11 0.37
11 19 0.63
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:22768804 original size:16 final size:15
Alignment explanation
Indices: 22768783--22768825 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
22768773 CATTAAAATT
*
22768783 TAAAATAAATTATAAA
1 TAAAATAAAATA-AAA
22768799 TAAAATAAAATAAAA
1 TAAAATAAAATAAAA
22768814 TAAAAATAAAAT
1 T-AAAATAAAAT
22768826 TCAATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAATAAAATAAAA
Found at i:22768809 original size:21 final size:21
Alignment explanation
Indices: 22768783--22768825 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22768773 CATTAAAATT
* *
22768783 TAAAATAAATTATAAATAAAA
1 TAAAATAAAATAAAAATAAAA
22768804 TAAAATAAAATAAAAATAAAA
1 TAAAATAAAATAAAAATAAAA
22768825 T
1 T
22768826 TCAATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAATAAAATAAAAATAAAA
Found at i:22768821 original size:6 final size:5
Alignment explanation
Indices: 22768783--22768825 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
22768773 CATTAAAATT
*
22768783 TAAAA TAAAT TATAAA TAAAA TAAAA TAAAA TAAAAA TAAAA T
1 TAAAA TAAAA TA-AAA TAAAA TAAAA TAAAA T-AAAA TAAAA T
22768826 TCAATTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
TAAAA
Found at i:22776498 original size:25 final size:25
Alignment explanation
Indices: 22776465--22776515 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
22776455 TCATATATCT
22776465 TCTTACTATATCAATATCCATTTCA
1 TCTTACTATATCAATATCCATTTCA
22776490 TCTTACTATATCAATATCCATTTCA
1 TCTTACTATATCAATATCCATTTCA
22776515 T
1 T
22776516 GCATTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (25 bp):
TCTTACTATATCAATATCCATTTCA
Found at i:22776917 original size:23 final size:22
Alignment explanation
Indices: 22776866--22776946 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 22
22776856 AATATACGAT
22776866 ACAT-AAGTGCCTGAAA-CGAC
1 ACATAAAGTGCCTGAAATCGAC
**
22776886 ACAGGAAGTGCCTGAAATTCGAC
1 ACATAAAGTGCCTGAAA-TCGAC
22776909 ACATAAAGTGCCTGAAATACGAC
1 ACATAAAGTGCCTGAAAT-CGAC
*
22776932 ACATAAAGTGTCTGA
1 ACATAAAGTGCCTGA
22776947 TCAGCAAAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
20 3 0.06
21 12 0.23
22 1 0.02
23 37 0.70
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (22 bp):
ACATAAAGTGCCTGAAATCGAC
Found at i:22785833 original size:6 final size:6
Alignment explanation
Indices: 22785822--22785861 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
22785812 ACTCATATCA
*
22785822 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCGT TTTC
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTC
22785862 CAATAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.12, C:0.17, G:0.03, T:0.68
Consensus pattern (6 bp):
TTTCAT
Found at i:22795722 original size:31 final size:31
Alignment explanation
Indices: 22795685--22795761 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
22795675 TAATCTTTTC
* * * *
22795685 AATAAAATGAGATAAAAATAATAGTTTATAT
1 AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
*
22795716 ACTAAAATGAGAAAAAAAAAAGAGTTTAAAT
1 AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
*
22795747 AATAAAGTGAAGAAA
1 AATAAAATG-AGAAA
22795762 CCGTTATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 33 0.87
32 5 0.13
ACGTcount: A:0.62, C:0.01, G:0.13, T:0.23
Consensus pattern (31 bp):
AATAAAATGAGAAAAAAAAAAGAGTTTAAAT
Found at i:22800462 original size:31 final size:31
Alignment explanation
Indices: 22800395--22800462 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
22800385 TCTTTTTATT
* * *
22800395 AATATATGAATTTTATTTTTGTTAATATATG
1 AATATATGAATATTATTTTGGATAATATATG
22800426 AATATATGAATATTATGTTTGGAT-AT-TATG
1 AATATATGAATATTAT-TTTGGATAATATATG
22800456 ACATATA
1 A-ATATA
22800463 AACTAATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 5 0.16
31 22 0.69
32 5 0.16
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (31 bp):
AATATATGAATATTATTTTGGATAATATATG
Found at i:22800690 original size:21 final size:21
Alignment explanation
Indices: 22800645--22800691 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
22800635 AAAAAATAAA
*
22800645 ATAG-ATTATATATTATTTTT
1 ATAGTATTATATATTATATTT
22800665 ATAGTATTATATATTATGATTT
1 ATAGTATTATATATTAT-ATTT
22800687 -TAGTA
1 ATAGTA
22800692 AATTCATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (21 bp):
ATAGTATTATATATTATATTT
Found at i:22800733 original size:17 final size:18
Alignment explanation
Indices: 22800708--22800753 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
22800698 TATAAGAATA
*
22800708 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
22800725 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
22800743 ATTAAATTATA
1 ATTAAATTATA
22800754 TTTAATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:22800750 original size:55 final size:54
Alignment explanation
Indices: 22800684--22800789 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 54
22800674 TATATTATGA
* *
22800684 TTTTAGTAAATTCATA-TAAGAATAATTATATTAAGAATTTTATTAAATTATATAT
1 TTTTAGTAAATT-ATATTAAGAATAATTATATTAA-AATATGATTAAATTATATAT
* * *
22800739 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTAT
1 TTTTAGTAAATTATA-TTAAGAATAATTATATTAAAATATGATTAAATTAT
22800790 TTACTATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
54 3 0.07
55 25 0.57
56 16 0.36
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (54 bp):
TTTTAGTAAATTATATTAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:22801009 original size:45 final size:44
Alignment explanation
Indices: 22800921--22801013 Score: 134
Period size: 45 Copynumber: 2.1 Consensus size: 44
22800911 ATTACAACAT
*
22800921 CATTCCATTCAATCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
* *
22800965 CATTCCATTCAACCAAACA-ATTGAATTACTATTGCAGTTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTACAGTTCTATTC
22801010 CATT
1 CATT
22801014 ACACCTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 22 0.50
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.34
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:22801024 original size:16 final size:16
Alignment explanation
Indices: 22801003--22801065 Score: 108
Period size: 16 Copynumber: 3.9 Consensus size: 16
22800993 CTATTGCAGT
*
22801003 TCTATTCCATTACACC
1 TCTATTCCATTACAGC
22801019 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
*
22801035 TCTATTCAATTACAGC
1 TCTATTCCATTACAGC
22801051 TCTATTCCATTACAG
1 TCTATTCCATTACAG
22801066 TGAACCAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.05, T:0.38
Consensus pattern (16 bp):
TCTATTCCATTACAGC
Found at i:22812686 original size:45 final size:45
Alignment explanation
Indices: 22812583--22813002 Score: 299
Period size: 45 Copynumber: 9.5 Consensus size: 45
22812573 ACAGATCGAG
* *
22812583 TCTTATCTTCCTGAAGTTGCAGTG-GAGCAGACTAAG-TAGGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGAT-GGCAAA
*
22812627 TCTTATC-CTTCTGAAGTTGCAGTGAG-GCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACT-AAGATGGCAAA
* * *
22812672 TCTTATCTCCCTGAAGTTGCAGTG-GAGTAGATTAA-A-GCCGACAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGATGGC-A-AA
22812716 TCTTATCTCCCTGAAGTTGCAGTGAG-GCAGACTAAAGATGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACT-AAGATGGCAAA
* * * *** *
22812761 TCTTATCTCCCTGAAGTTACAGTG-GAGCAGATTAAAACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGATGGCAAA
* * * * *
22812805 TCTTATCTCTCTGAAGTT--A-TAGAGAGCAGA-TCACAT--CTAG
1 TCTTATCTCCCTGAAGTTGCAGT-GAGAGCAGACTAAGATGGCAAA
* * ** * *
22812845 TCTTATCTCCTTGAAGTTGCAGT-AGAGTAGACTAAGTAAAGTAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAG-ATGGCAAA
*
22812890 TCTTATC-CTCCTGAAGTTGCGGTGAG-GCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGACT-AAGATGGCAAA
* * *
22812935 TCTTATCT-CCTCAAAGTTGCAGTG-GAGCAGATTAA-A-GCCGACAA
1 TCTTATCTCCCT-GAAGTTGCAGTGAGAGCAGACTAAGATGGC-A-AA
* *
22812979 TCCTATCTCCCTGAAGTTGTAGTG
1 TCTTATCTCCCTGAAGTTGCAGTG
22813003 GAGTGGATTA
Statistics
Matches: 299, Mismatches: 46, Indels: 62
0.73 0.11 0.15
Matches are distributed among these distances:
40 17 0.06
41 8 0.03
42 12 0.04
43 13 0.04
44 112 0.37
45 126 0.42
46 9 0.03
47 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGACTAAGATGGCAAA
Found at i:22812720 original size:89 final size:89
Alignment explanation
Indices: 22812583--22813002 Score: 421
Period size: 89 Copynumber: 4.8 Consensus size: 89
22812573 ACAGATCGAG
* * ** * *
22812583 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT-AAGTAGGCAAGTCTTATC-CTTCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAA-TCTTATCTC-CCTGAAGTTG
22812646 CAGTGAGGCAGACTGAAGATGGCAAA
64 CAGTGAGGCAGACTGAAGATGGCAAA
*
22812672 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGACAATCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTTATCTCCCTGAAGTTGCA
*
22812737 GTGAGGCAGACTAAAGATGGCAAA
66 GTGAGGCAGACTGAAGATGGCAAA
* * * * **
22812761 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACC-TCAGATCTTATCTCTCTGAAGTTAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACA-ATCTTATCTCCCTGAAGTTGC
* * * * *
22812825 AGAGA-GCAGA-T-CACAT--CTAG
65 AGTGAGGCAGACTGAAGATGGCAAA
* * * * *** *
22812845 TCTTATCTCCTTGAAGTTGCAGTAGAGTAGACT-AAGTAAAGTAAGTCTTATC-CTCCTGAAGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA-CAA-TCTTATCTC-CCTGAAGTT
*
22812908 GCGGTGAGGCAGACTGAAGATGGCAAA
63 GCAGTGAGGCAGACTGAAGATGGCAAA
* * *
22812935 TCTTATCT-CCTCAAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGT
1 TCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTTATCTCCCTGAAGTTGC
22812999 AGTG
65 AGTG
22813003 GAGTGGATTA
Statistics
Matches: 265, Mismatches: 51, Indels: 30
0.77 0.15 0.09
Matches are distributed among these distances:
83 2 0.01
84 32 0.12
85 19 0.07
86 8 0.03
87 2 0.01
88 10 0.04
89 150 0.57
90 38 0.14
91 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTTATCTCCCTGAAGTTGCA
GTGAGGCAGACTGAAGATGGCAAA
Found at i:22812938 original size:174 final size:173
Alignment explanation
Indices: 22812672--22812996 Score: 442
Period size: 174 Copynumber: 1.9 Consensus size: 173
22812662 AGATGGCAAA
* * **
22812672 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCGACAATCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAAGCAAACAATCTTATCTCCCTGAAGTTGCA
*
22812737 GTGAGGCAGACTAAAGATGGCAAATCTTATCTCC-CTGAAGTTACAGTGGAGCAGATTAAAACC-
66 GTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTC-AAAGTTACAGTGGAGCAGATTAAAACCG
* * *
22812800 TCAGATCTTATCTCTCTGAAGTTATAGAGAGCAGATCACATCTAG
130 ACA-ATCCTATCTCCCTGAAGTTATAGAGAGCAGATCACATCTAG
* * *
22812845 TCTTATCTCCTTGAAGTTGCAGTAGAGTAGACT-AAGTAAAGTAAGTCTTATC-CTCCTGAAGTT
1 TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAAGCAAA-CAA-TCTTATCTC-CCTGAAGTT
* * * *
22812908 GCGGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCTCAAAGTTGCAGTGGAGCAGATTAAAGC
63 GCAGTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTCAAAGTTACAGTGGAGCAGATTAAAAC
22812973 CGACAATCCTATCTCCCTGAAGTT
128 CGACAATCCTATCTCCCTGAAGTT
22812997 GTAGTGGAGT
Statistics
Matches: 132, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
172 4 0.03
173 33 0.25
174 92 0.70
175 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (173 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAAGCAAACAATCTTATCTCCCTGAAGTTGCA
GTGAGGCAGACTAAAGATGGCAAATCTTATCTCCTCAAAGTTACAGTGGAGCAGATTAAAACCGA
CAATCCTATCTCCCTGAAGTTATAGAGAGCAGATCACATCTAG
Found at i:22814620 original size:22 final size:23
Alignment explanation
Indices: 22814595--22814637 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
22814585 GTATAATATA
*
22814595 TATTTTTTTG-TTTATATGTAAT
1 TATTTTTTTGATCTATATGTAAT
22814617 TATTTTTTTGATCTATATGTA
1 TATTTTTTTGATCTATATGTA
22814638 TATATCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.65
Consensus pattern (23 bp):
TATTTTTTTGATCTATATGTAAT
Found at i:22815016 original size:4 final size:4
Alignment explanation
Indices: 22815002--22815036 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
22814992 TTATTATGTA
22815002 TATT CTATT TATT TATT TATT TATT TATAT TATT T
1 TATT -TATT TATT TATT TATT TATT TAT-T TATT T
22815037 CTATGACGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 21 0.72
5 8 0.28
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:22815036 original size:9 final size:9
Alignment explanation
Indices: 22814985--22815036 Score: 54
Period size: 8 Copynumber: 5.8 Consensus size: 9
22814975 TTTGTATGTG
*
22814985 ATTATTTTT
1 ATTATTTAT
*
22814994 ATTATGTAT
1 ATTATTTAT
22815003 ATTCTATTTAT
1 A-T-TATTTAT
22815014 -TTATTTAT
1 ATTATTTAT
22815022 -TTATTTAT
1 ATTATTTAT
22815030 ATTATTT
1 ATTATTT
22815037 CTATGACGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 15 0.41
9 15 0.41
10 1 0.03
11 6 0.16
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (9 bp):
ATTATTTAT
Found at i:22837731 original size:16 final size:16
Alignment explanation
Indices: 22837710--22837755 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
22837700 TTATTAAATT
22837710 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
22837726 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
22837741 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
22837756 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:22837829 original size:120 final size:120
Alignment explanation
Indices: 22837616--22837865 Score: 484
Period size: 120 Copynumber: 2.1 Consensus size: 120
22837606 GGCAGTTGTC
22837616 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
22837681 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
22837736 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATA-ATAG
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA-AG
22837800 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
65 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
22837856 TAATAATTAT
1 TAATAATTAT
22837866 ATTTAAATAT
Statistics
Matches: 129, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
119 1 0.01
120 128 0.99
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
Found at i:22837851 original size:16 final size:16
Alignment explanation
Indices: 22837830--22837874 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
22837820 TTATTAAATT
*
22837830 ATATATTTTAATTATA
1 ATATATTTTAATAATA
22837846 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
*
22837861 ATTATATTTAAATA
1 A-TATATTTTAATA
22837875 TGATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 10 0.40
16 9 0.36
17 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:22837880 original size:16 final size:16
Alignment explanation
Indices: 22837831--22837871 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
22837821 TATTAAATTA
*
22837831 TATATTTTAATTATAA-
1 TATA-TTTAATAATAAT
22837847 TATATTTAATAATAAT
1 TATATTTAATAATAAT
22837863 TATATTTAA
1 TATATTTAA
22837872 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATTTAATAATAAT
Found at i:22838098 original size:45 final size:44
Alignment explanation
Indices: 22838016--22838106 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
22838006 ACCTCTATTC
* *
22838016 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
*** * *
22838060 CATTCAACCAAACAGTTGATTTGCTATTACATCTCTATTCAATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCAATTA
22838105 CA
1 CA
22838107 CCTCTATTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
Found at i:22838133 original size:16 final size:16
Alignment explanation
Indices: 22838085--22838138 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
22838075 TTGATTTGCT
* *
22838085 ATTACATCTCTATTCA
1 ATTACACCTCTATTCC
22838101 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
22838117 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
22838133 AATACA
1 ATTACA
22838139 GTGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:22842880 original size:16 final size:15
Alignment explanation
Indices: 22842826--22842923 Score: 56
Period size: 16 Copynumber: 6.3 Consensus size: 15
22842816 AACATTAAAT
*
22842826 TTAATTTAATTTAAGA
1 TTAA-TTAATTTAATA
*
22842842 -TAATTACTTTAATA
1 TTAATTAATTTAATA
*
22842856 TTGATTTAATTTAATA
1 TT-AATTAATTTAATA
**
22842872 CTTAATTAATAAAATA
1 -TTAATTAATTTAATA
* * *
22842888 CT-ATTAAGATAAATA
1 TTAATTAA-TTTAATA
22842903 TTAAATTAAATTTAATA
1 TT-AATT-AATTTAATA
22842920 TTAA
1 TTAA
22842924 ACTATTAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
14 14 0.23
15 11 0.18
16 23 0.37
17 12 0.19
18 2 0.03
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (15 bp):
TTAATTAATTTAATA
Found at i:22844069 original size:35 final size:35
Alignment explanation
Indices: 22844020--22844087 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
22844010 CTGTTGCTAG
*
22844020 TAAAGCAATTCCATACATAAGTCATATACCCAAAC
1 TAAAGCAATGCCATACATAAGTCATATACCCAAAC
* *
22844055 TAAAGCCATGCCATACATAAGTCATGTACCCAA
1 TAAAGCAATGCCATACATAAGTCATATACCCAA
22844088 CATACCAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22
Consensus pattern (35 bp):
TAAAGCAATGCCATACATAAGTCATATACCCAAAC
Found at i:22848072 original size:37 final size:38
Alignment explanation
Indices: 22847973--22848075 Score: 92
Period size: 37 Copynumber: 2.8 Consensus size: 38
22847963 ATCTACAAGA
*
22847973 TAAACATTAAATTTAAT-TT-AA-TATTAAGATAATCAAT
1 TAAATATT-AATTTAATATTAAACTATTAAGATAAT-AAT
* * *
22848010 TTAATATTAAATTAATA-AAAGACTATTAAGATAAGT-AT
1 TAAATATTAATTTAATATTAA-ACTATTAAGATAA-TAAT
22848048 TAAAT-TTAATTTAATATTAAACTATTAA
1 TAAATATTAATTTAATATTAAACTATTAA
22848076 AATATTATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
36 7 0.13
37 25 0.47
38 9 0.17
39 11 0.21
40 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (38 bp):
TAAATATTAATTTAATATTAAACTATTAAGATAATAAT
Found at i:22851650 original size:48 final size:48
Alignment explanation
Indices: 22851566--22851658 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
22851556 TCAAGAGGGA
* * *
22851566 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCAAAG
1 ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCAAAG
*
22851614 ATAAATAGTGATAAAAGTGTAGATAGTGAAAAACCAAGTTTAGCA
1 ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCA
22851659 TTGCATAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.23
Consensus pattern (48 bp):
ATAAATAGTGATAAAAGTGTAGACAGTGAAAAACCAAGTTTAGCAAAG
Found at i:22856223 original size:21 final size:21
Alignment explanation
Indices: 22856199--22856241 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22856189 CTTTTAGTAT
22856199 TTAGGTTAGAATTGATTTGAC
1 TTAGGTTAGAATTGATTTGAC
22856220 TTAGGTTAGAATTGATTTGAC
1 TTAGGTTAGAATTGATTTGAC
22856241 T
1 T
22856242 CTCGCCTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (21 bp):
TTAGGTTAGAATTGATTTGAC
Found at i:22859966 original size:24 final size:24
Alignment explanation
Indices: 22859934--22859981 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
22859924 TAAACTTAAA
*
22859934 AATTGAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
22859958 AATTCAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
22859982 TTAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AATTCAGTTTAAACAATTTAAAAC
Found at i:22864218 original size:45 final size:45
Alignment explanation
Indices: 22864159--22864314 Score: 206
Period size: 45 Copynumber: 3.5 Consensus size: 45
22864149 ATATAAATAT
*
22864159 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATGCATACAAC
1 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
* * * * *
22864204 AGGTACTATTTACCAGTGTTGGCTTTCATG-TCACATAAATACAAT
1 AGGTACTATGTACCAGTGTTGGCTATCATGCT-ATATACATACAAC
** *
22864249 AGGTACTATGTACTGGTGTTGGCTATCATGCCATATACATACAAC
1 AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
*
22864294 AGGTACTATGTATCAGTGTTG
1 AGGTACTATGTACCAGTGTTG
22864315 ATTTTCTTAT
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.01
45 91 0.99
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (45 bp):
AGGTACTATGTACCAGTGTTGGCTATCATGCTATATACATACAAC
Found at i:22866287 original size:91 final size:91
Alignment explanation
Indices: 22866126--22866313 Score: 205
Period size: 91 Copynumber: 2.1 Consensus size: 91
22866116 ATTTAATAAT
* * * *
22866126 CTGCAAACACTAGTGGTTTATCCACAATTTTTACTAACAACTTTAATCTGCAAAAAAGTTGTGCA
1 CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
* * * *
22866191 TTCACAACTACTAGTAGCGTATTAAC
66 ATCACAAATACTAGCAGCGTATGAAC
* *** * *** *
22866217 CTGCAAACACTAGTGGTTTATCCATAATTTATACTGGTAAATTTTATCTACAAACCCGTTATGTA
1 CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
* *
22866282 ATCACAAATACTGGCAGTGTATGAAC
66 ATCACAAATACTAGCAGCGTATGAAC
22866308 CTGCAA
1 CTGCAA
22866314 TACTGGCGGC
Statistics
Matches: 78, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (91 bp):
CTGCAAACACTAGTGGTTTATCCACAATTTATACTAACAAATTTAATCTACAAAAAAGTTATGCA
ATCACAAATACTAGCAGCGTATGAAC
Found at i:22866823 original size:9 final size:9
Alignment explanation
Indices: 22866806--22866839 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
22866796 TGAGTTTTCG
22866806 AATTCGAAT
1 AATTCGAAT
*
22866815 AACTCGAAT
1 AATTCGAAT
22866824 AATTCGAAT
1 AATTCGAAT
22866833 AATTCGA
1 AATTCGA
22866840 CTATCAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22866957 original size:29 final size:29
Alignment explanation
Indices: 22866897--22866959 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
22866887 TTTTACTTTT
* *
22866897 CCCT-CAAAACTTTTACTCCTTCCCACTT
1 CCCTCCAAAACTTTTACTCCCTCCCACTC
22866925 CCCTCCAAAACTTTTACTCCCCTCCC-CTC
1 CCCTCCAAAACTTTTACT-CCCTCCCACTC
22866954 CCCTCC
1 CCCTCC
22866960 CCTCTCAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 21 0.68
30 6 0.19
ACGTcount: A:0.17, C:0.52, G:0.00, T:0.30
Consensus pattern (29 bp):
CCCTCCAAAACTTTTACTCCCTCCCACTC
Found at i:22868367 original size:25 final size:25
Alignment explanation
Indices: 22868339--22868394 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
22868329 ATTTCAGTGA
*
22868339 CTAATGTAGTCTCTTGAATTTGGGT
1 CTAATATAGTCTCTTGAATTTGGGT
22868364 CTAATATAGTCTCTTGAATTTGGGT
1 CTAATATAGTCTCTTGAATTTGGGT
22868389 CTAATA
1 CTAATA
22868395 GCTTGCAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (25 bp):
CTAATATAGTCTCTTGAATTTGGGT
Found at i:22868455 original size:23 final size:23
Alignment explanation
Indices: 22868429--22868482 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
22868419 GATCATGAAC
*
22868429 ATATTTATGAAAATATGTGTTTA
1 ATATTTATGAAAATATGTATTTA
** * *
22868452 ATATACATGAATATATTTATTTA
1 ATATTTATGAAAATATGTATTTA
*
22868475 ATGTTTAT
1 ATATTTAT
22868483 ACAAGTTTTC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (23 bp):
ATATTTATGAAAATATGTATTTA
Found at i:22868548 original size:44 final size:42
Alignment explanation
Indices: 22868465--22868549 Score: 107
Period size: 44 Copynumber: 2.0 Consensus size: 42
22868455 TACATGAATA
* *
22868465 TATTTATTTAATGTTTATACAAGTTTTCATTTAACTGAAACC
1 TATTTATTTAATGTTTAAACAAGTTTTCATTGAACTGAAACC
* **
22868507 TATTTATTTAATGTTTACAAAGAAGTTTTTGTTGAACTGAAAC
1 TATTTATTTAATGTTT--AAACAAGTTTTCATTGAACTGAAAC
22868550 AAATGAGGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 16 0.44
44 20 0.56
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (42 bp):
TATTTATTTAATGTTTAAACAAGTTTTCATTGAACTGAAACC
Found at i:22869729 original size:19 final size:20
Alignment explanation
Indices: 22869695--22869734 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
22869685 AAAAAATTGA
22869695 ATATTTTAAGTTTTTTATAT
1 ATATTTTAAGTTTTTTATAT
*
22869715 ATATTTTTA-TTTTTTATAT
1 ATATTTTAAGTTTTTTATAT
22869734 A
1 A
22869735 ATTAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
ATATTTTAAGTTTTTTATAT
Found at i:22872009 original size:27 final size:27
Alignment explanation
Indices: 22871954--22872006 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22871944 AGTTTAAATT
** *
22871954 TTATATTAATATTAATATTAAATATAA
1 TTATATTAATATTAATAAAAAATAAAA
22871981 TTATATTAATATTAA-AAAAAATAAAA
1 TTATATTAATATTAATAAAAAATAAAA
22872007 ATTCCCCATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (27 bp):
TTATATTAATATTAATAAAAAATAAAA
Found at i:22882548 original size:22 final size:22
Alignment explanation
Indices: 22882523--22882565 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22882513 TTAAAAGAGA
* *
22882523 CATAATTATTCAACTAATATTT
1 CATAACTATTCAAATAATATTT
22882545 CATAACTATTCAAATAATATT
1 CATAACTATTCAAATAATATT
22882566 ACTTGTATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (22 bp):
CATAACTATTCAAATAATATTT
Found at i:22888046 original size:33 final size:33
Alignment explanation
Indices: 22888002--22888199 Score: 144
Period size: 33 Copynumber: 5.5 Consensus size: 33
22887992 ATCAGTGGAT
22888002 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
* * * *
22888035 TCAGCATTTAGCAACCCCTTTCACATTTAAGATACGGTGGGA
1 TCAGCACTTAGCAACCAC---CA-A--TGA-AT-CGG-GGAA
* *
22888077 TCAGCACTTAGCAACCACCAATGATTCAGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
* * * *
22888110 TCAACACTTAGCAACCCCTTCACATTTAAAATATGGTGGAA
1 TCAGCACTTAGCAACCAC--CA-A--T-GAAT-CGG-GGAA
*
22888151 TCAGCACTTAGCAACCATCAATGAATCGGGGAA
1 TCAGCACTTAGCAACCACCAATGAATCGGGGAA
22888184 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
22888200 CCCTTTATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 34
0.70 0.12 0.19
Matches are distributed among these distances:
33 55 0.43
34 4 0.03
35 6 0.05
36 6 0.05
37 1 0.01
38 3 0.02
39 8 0.06
40 3 0.02
41 22 0.17
42 19 0.15
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGAATCGGGGAA
Found at i:22888183 original size:74 final size:75
Alignment explanation
Indices: 22887996--22888201 Score: 324
Period size: 74 Copynumber: 2.8 Consensus size: 75
22887986 TCCGTTATCA
* *
22887996 GTGGATTCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCATTTAGCAACCCCTTTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
*
22888061 TTAAGATACG
66 TTAAAATACG
* * * *
22888071 GTGGGATCAGCACTTAGCAACCACCAATGATTCAGGGAATCAACACTTAGCAACCCC-TTCACAT
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
*
22888135 TTAAAATATG
66 TTAAAATACG
*
22888145 GTGGAATCAGCACTTAGCAACCATCAATGAATCGGGGAATCAGCACTTAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCC
22888202 CTTTATATTC
Statistics
Matches: 118, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
74 67 0.57
75 51 0.43
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (75 bp):
GTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCACAT
TTAAAATACG
Found at i:22891126 original size:11 final size:11
Alignment explanation
Indices: 22891112--22891136 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22891102 CAAGTGAAGA
22891112 ATGAATGAATG
1 ATGAATGAATG
22891123 ATGAATGAATG
1 ATGAATGAATG
22891134 ATG
1 ATG
22891137 TTTGGAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
ATGAATGAATG
Found at i:22895850 original size:7 final size:7
Alignment explanation
Indices: 22895838--22895865 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
22895828 ATGGAGGCCT
22895838 GGTATAA
1 GGTATAA
22895845 GGTATAA
1 GGTATAA
22895852 GGTATAA
1 GGTATAA
22895859 GGTATAA
1 GGTATAA
22895866 ATATACTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (7 bp):
GGTATAA
Found at i:22896061 original size:35 final size:35
Alignment explanation
Indices: 22896022--22896091 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
22896012 GTAAATACAG
*
22896022 AATAGAGATAAAGTCTGCCAAGACAATAAACACGA
1 AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
* * ** *
22896057 AATAGAAATAAATTTTTTCAGGACAATAAACACGA
1 AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
22896092 GGTAAGTTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.20
Consensus pattern (35 bp):
AATAGAAATAAAGTCTGCCAAGACAATAAACACGA
Found at i:22896410 original size:20 final size:20
Alignment explanation
Indices: 22896385--22896423 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
22896375 GCGAAGACCC
22896385 AATGAGAATTAGAGAAAGAT
1 AATGAGAATTAGAGAAAGAT
22896405 AATGAGAATTAGAGAAAGA
1 AATGAGAATTAGAGAAAGA
22896424 CAGGTCTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (20 bp):
AATGAGAATTAGAGAAAGAT
Found at i:22901159 original size:74 final size:74
Alignment explanation
Indices: 22901068--22901219 Score: 286
Period size: 74 Copynumber: 2.1 Consensus size: 74
22901058 GTCTTACAAA
22901068 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
1 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
22901133 ATACTTTAT
66 ATACTTTAT
* *
22901142 CCTCAGACTCAATTTTCCTTTTTGACAAAACCAAATAATCTTTTTCCATAGAGAGACCTTTAGAA
1 CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
22901207 ATACTTTAT
66 ATACTTTAT
22901216 CCTC
1 CCTC
22901220 TAAATTCAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (74 bp):
CCTCAGACTCAAATTTCCTTTTTGACAAAACCAAATAATCTTTTTACATAGAGAGACCTTTAGAA
ATACTTTAT
Found at i:22904262 original size:62 final size:59
Alignment explanation
Indices: 22904154--22904354 Score: 163
Period size: 62 Copynumber: 3.2 Consensus size: 59
22904144 ATCACTTTAA
* * *
22904154 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
22904213 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATGTTAAGATAATC
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAACATTAAATTAAATTTAATATT---A-AAT-
22904278 ACTT
58 -C-T
* * * ** *
22904282 TAACATTAAACTAATAAAATA-TTATTAAGATAAGTATTAAATTTAATTTAATATTAAAT-T
1 T---ATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
*
22904342 TATTAAAATAATA
1 TATTAAATTAATA
22904355 TTATTTTTAG
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
57 11 0.09
59 20 0.17
60 2 0.02
61 1 0.01
62 27 0.23
64 3 0.03
65 2 0.02
66 3 0.03
68 26 0.22
69 3 0.03
71 3 0.03
72 15 0.13
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:22904351 original size:17 final size:17
Alignment explanation
Indices: 22904316--22904348 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22904306 TTAAGATAAG
*
22904316 TATTAAATTTAATTTAA
1 TATTAAATTTAATTAAA
22904333 TATTAAATTT-ATTAAA
1 TATTAAATTTAATTAAA
22904349 ATAATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAAATTTAATTAAA
Found at i:22915645 original size:91 final size:91
Alignment explanation
Indices: 22915520--22916182 Score: 1236
Period size: 91 Copynumber: 7.3 Consensus size: 91
22915510 AAGATTTTAG
* * *
22915520 TAAATTAATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
22915585 ATTTAATATTAATTATTTTAAATTATA
65 ATTTAATATTAATTATTTTAAATTATA
22915612 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
22915677 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
22915703 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
22915768 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
22915794 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
22915859 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
22915885 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
22915950 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
22915976 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
22916041 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
* * *
22916067 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGCAATTATATATTAGTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
* *
22916132 TTTAATAATAACTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
22916158 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
22916183 GTTATAATTA
Statistics
Matches: 562, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
91 547 0.97
92 15 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:22916274 original size:59 final size:58
Alignment explanation
Indices: 22916209--22916397 Score: 154
Period size: 59 Copynumber: 3.2 Consensus size: 58
22916199 ATTTTATTAA
22916209 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTA-TTCAAATTATATTTTATAGT
* * ** * *
22916268 ATCATATATTATGATTTTAGTAAACTCATATAAGAATATTGATTATT--AA-GA-ATTTTATTA-
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTCAAATTATATTTTA-TAG
*
22916328 A
58 T
* * * *
22916329 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTC-AAATTATATTTTATAGT
22916388 ATCATATATT
1 ATCATATATT
22916398 ATGATTTGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 28
0.67 0.13 0.19
Matches are distributed among these distances:
54 10 0.10
55 4 0.04
56 1 0.01
57 5 0.05
58 3 0.03
59 27 0.28
60 4 0.04
61 18 0.19
62 3 0.03
63 5 0.05
64 1 0.01
65 6 0.06
66 10 0.10
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTCAAATTATATTTTATAGT
Found at i:22916347 original size:18 final size:17
Alignment explanation
Indices: 22916319--22916353 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22916309 ATTATTAAGA
*
22916319 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22916336 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22916354 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22916455 original size:59 final size:59
Alignment explanation
Indices: 22916272--22916455 Score: 148
Period size: 56 Copynumber: 3.1 Consensus size: 59
22916262 TATAGTATCA
* * *
22916272 TATATTATGATTTTAGTAAACTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAAATCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* ** * *
22916331 TATA-TAT--TTTAATTAAAAT-ATAT-TTAATAATAATTATGCTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAGTAAAATCATATAAGAATATTAATTAT--TAAGA--AT-TTTAT-TA-AA
22916389 T
59 T
* *
22916390 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAAATCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
22916451 TATAT
1 TATAT
22916456 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 15, Indels: 32
0.67 0.11 0.23
Matches are distributed among these distances:
54 10 0.11
55 5 0.05
56 12 0.13
57 3 0.03
58 8 0.09
59 11 0.12
61 6 0.06
62 8 0.09
63 3 0.03
64 12 0.13
65 5 0.05
66 11 0.12
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAAATCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:22916473 original size:16 final size:16
Alignment explanation
Indices: 22916452--22916493 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22916442 TTATTAAATT
*
22916452 ATATATTTTAATTATA
1 ATATATTTTAATAATA
22916468 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
22916483 AT-TATGTTTAA
1 ATATAT-TTTAA
22916494 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:22916478 original size:15 final size:15
Alignment explanation
Indices: 22916443--22916484 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22916433 TTAAGAATTT
*
22916443 TATTAAATTAT-ATA
1 TATTTAATTATAATA
22916457 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
22916471 TATTTAATAATAAT
1 TATTTAATTATAAT
22916485 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:22916488 original size:120 final size:121
Alignment explanation
Indices: 22916198--22916488 Score: 496
Period size: 120 Copynumber: 2.4 Consensus size: 121
22916188 AATTATTTTA
* * *
22916198 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTCAAATTATATTT
* *
22916262 TATAGTATCATATATTATGATTTTAGTAAACTCATATAAGAATATTGATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAACTCATATAAGAATATTAATTATTAAG
*
22916318 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCT-AAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTCAAATTATATTT
*
22916382 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 TATAGTATCATATATTATGATTTGAGTAAACTCATATAAGAATATTAATTATTAAG
*
22916438 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
22916489 TTTAAATATG
Statistics
Matches: 162, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
120 161 0.99
121 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (121 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTCAAATTATATTT
TATAGTATCATATATTATGATTTGAGTAAACTCATATAAGAATATTAATTATTAAG
Found at i:22916733 original size:16 final size:16
Alignment explanation
Indices: 22916707--22916755 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
22916697 TTGATTTGCT
*
22916707 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
* *
22916723 ATTACTCCTCTATTTC
1 ATTACGCCTCTATTCC
*
22916739 ATTACGCCTCCATTCC
1 ATTACGCCTCTATTCC
22916755 A
1 A
22916756 ATACAACGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.20, C:0.35, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:22917923 original size:7 final size:7
Alignment explanation
Indices: 22917880--22917904 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22917870 TTTAAAATCA
22917880 TTTTTAT
1 TTTTTAT
22917887 TTTTTAT
1 TTTTTAT
22917894 TTTTTAT
1 TTTTTAT
22917901 TTTT
1 TTTT
22917905 CAAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:22919531 original size:29 final size:29
Alignment explanation
Indices: 22919494--22919583 Score: 180
Period size: 29 Copynumber: 3.1 Consensus size: 29
22919484 AATTGTTCTT
22919494 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
22919523 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
22919552 TTAATGGAGTTCATCTTGGTTTAACTTTC
1 TTAATGGAGTTCATCTTGGTTTAACTTTC
22919581 TTA
1 TTA
22919584 GGAGAAAGTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (29 bp):
TTAATGGAGTTCATCTTGGTTTAACTTTC
Found at i:22933181 original size:7 final size:7
Alignment explanation
Indices: 22933169--22933197 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
22933159 TAATTAGGGG
22933169 TTAAAAT
1 TTAAAAT
22933176 TTAAAAT
1 TTAAAAT
22933183 TTAAAAT
1 TTAAAAT
22933190 TTAAAAT
1 TTAAAAT
22933197 T
1 T
22933198 AATAATGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
TTAAAAT
Found at i:22934239 original size:21 final size:22
Alignment explanation
Indices: 22934211--22934274 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
22934201 GCTTTGCCGG
22934211 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
* ** *
22934233 T-AGGCACCACGTGTGTCAT-T
1 TCAGGCACTATATGTGTCGTAT
* *
22934253 TCGGGCACTTTATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
22934275 ACTGCTTCTG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (22 bp):
TCAGGCACTATATGTGTCGTAT
Found at i:22934536 original size:23 final size:23
Alignment explanation
Indices: 22934510--22934663 Score: 128
Period size: 23 Copynumber: 7.1 Consensus size: 23
22934500 GGATTCGCTG
*
22934510 ATCAGGCACTTTATGTGTCATAT
1 ATCAGGCACTTTATGTGTCGTAT
*
22934533 ATCAGGAACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * ****
22934556 TTCAAGCACCACGTGTGTCGT-T
1 ATCAGGCACTTTATGTGTCGTAT
*
22934578 -TCAGGCAC-TTATGTGTTGTAT
1 ATCAGGCACTTTATGTGTCGTAT
*
22934599 ATCAAGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* **
22934622 TTCA-G-AC-TCGTGTGTCG--T
1 ATCAGGCACTTTATGTGTCGTAT
22934640 ATCAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
22934662 AT
1 AT
22934664 TGATCAGGTA
Statistics
Matches: 102, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
18 4 0.04
19 1 0.01
20 25 0.25
21 10 0.10
22 12 0.12
23 50 0.49
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:22934616 original size:43 final size:46
Alignment explanation
Indices: 22934510--22934663 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 46
22934500 GGATTCGCTG
* *
22934510 ATCAGGCACTTTATGTGTCATATATCAGGAACTTTATGTGTCGTAT
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
* **** * *
22934556 TTCAAGCACCACGTGTGTCGT-T-TCAGGCAC-TTATGTGTTGTAT
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
* **
22934599 ATCAAGCACTTTATGTGTCGTATTTCA-G-AC-TCGTGTGTCG--T
1 ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
*
22934640 ATCAGGCAC-TTATGTGTCGTATAT
1 ATCAAGCACTTTATGTGTCGTATAT
22934664 TGATCAGGTA
Statistics
Matches: 87, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
40 14 0.16
41 9 0.10
43 37 0.43
44 9 0.10
45 4 0.05
46 14 0.16
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (46 bp):
ATCAAGCACTTTATGTGTCGTATATCAGGAACTTTATGTGTCGTAT
Found at i:22934618 original size:66 final size:63
Alignment explanation
Indices: 22934510--22934663 Score: 218
Period size: 66 Copynumber: 2.4 Consensus size: 63
22934500 GGATTCGCTG
* *
22934510 ATCAGGCACTTTATGTGTCATATATCAGGAACTTTATGTGTCGTATTTCAAGCACCACGTGTGTC
1 ATCAGGCAC-TTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTC-AG-A-CACGTGTGTC
22934575 GT
62 GT
* * * *
22934577 TTCAGGCACTTATGTGTTGTATATCAAGCACTTTATGTGTCGTATTTCAGACTCGTGTGTCGT
1 ATCAGGCACTTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTCAGACACGTGTGTCGT
22934640 ATCAGGCACTTATGTGTCGTATAT
1 ATCAGGCACTTATGTGTCGTATAT
22934664 TGATCAGGTA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
63 33 0.42
64 1 0.01
65 2 0.03
66 35 0.44
67 8 0.10
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (63 bp):
ATCAGGCACTTATGTGTCGTATATCAAGAACTTTATGTGTCGTATTTCAGACACGTGTGTCGT
Found at i:22939643 original size:45 final size:45
Alignment explanation
Indices: 22939579--22939737 Score: 185
Period size: 45 Copynumber: 3.6 Consensus size: 45
22939569 TACTGAGTAT
***
22939579 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
* *
22939624 CATTGATTATAAAGGTGGTTGCTATATGTTGACTCCACCGAAAAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
** * * * *
22939669 CATTGAAAATAAAGGTGGTTGCCATATGATGATTCCACCGAATAT
1 CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
* * *
22939714 AATTAATTATAAGGGTGG-TGCTAT
1 CATTGATTATAAAGGTGGTTGCTAT
22939738 GTGCTGATCC
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
44 5 0.05
45 92 0.95
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATATGTTGATTCCACCGAAAAC
Found at i:22942680 original size:40 final size:40
Alignment explanation
Indices: 22942625--22942815 Score: 321
Period size: 40 Copynumber: 4.8 Consensus size: 40
22942615 ATTTGAATGA
22942625 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
22942665 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
22942705 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
* * *
22942745 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
* *
22942786 -ATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 GATCCGGGCTAAGTCCCGAAGGCATTTGTGC
22942816 GAGTTGCTAT
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
40 141 0.97
41 5 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
Found at i:22942816 original size:40 final size:40
Alignment explanation
Indices: 22942625--22942856 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
22942615 ATTTGAATGA
*
22942625 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22942665 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22942705 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
22942745 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * *
22942786 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * *
22942826 G-CCCGGGTTAAGACTCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
22942857 TGTGGTAATA
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 174 0.97
41 5 0.03
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.27
Consensus pattern (40 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:22942868 original size:80 final size:80
Alignment explanation
Indices: 22942626--22942884 Score: 310
Period size: 80 Copynumber: 3.2 Consensus size: 80
22942616 TTTGAATGAG
*
22942626 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
* *
22942691 TGTGCTAGTGAT-TT
66 TGTGCTAGTGGTAAT
22942705 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
1 -ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
* *
22942770 TTGTGCGAGTTG-ATAT
65 TTGTGCTAGTGGTA-AT
* * * * * * * * *
22942786 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATG-CCCGGGTTAAGACTCGAAGGCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTTGATCCGGGCTAAGACCCGAAGGCAT
*
22942850 TTGTGCTTGTGGTAAT
65 TTGTGCTAGTGGTAAT
* *
22942866 ATCC-GGCTAAATTCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
22942885 AAACTTGGGT
Statistics
Matches: 155, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
79 12 0.08
80 136 0.88
81 7 0.05
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
TGTGCTAGTGGTAAT
Found at i:22951000 original size:40 final size:40
Alignment explanation
Indices: 22950945--22951176 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
22950935 ATTTGAATGA
*
22950945 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22950985 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
22951025 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
22951065 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * *
22951106 -ATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
22951146 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
22951177 TGTGGTAATA
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 173 0.97
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:22951188 original size:80 final size:80
Alignment explanation
Indices: 22950946--22951204 Score: 310
Period size: 80 Copynumber: 3.2 Consensus size: 80
22950936 TTTGAATGAG
*
22950946 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
* *
22951011 TGTGCTAGTGAT-TT
66 TGTGCTAGTGGTAAT
22951025 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
1 -ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCAT
* *
22951090 TTGTGCGAGTTG-ATAT
65 TTGTGCTAGTGGTA-AT
* * * * * * * * *
22951106 ATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATG-CCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTTGATCCGGGCTAAGACCCGAAGGCAT
*
22951170 TTGTGCTTGTGGTAAT
65 TTGTGCTAGTGGTAAT
* *
22951186 ATCC-GGCTAAATTCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
22951205 AAACTTGGGT
Statistics
Matches: 155, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
79 12 0.08
80 136 0.88
81 7 0.05
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTGATCCGGGCTAAGACCCGAAGGCATT
TGTGCTAGTGGTAAT
Found at i:22956289 original size:23 final size:25
Alignment explanation
Indices: 22956238--22956290 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
22956228 TCTTTGTGAG
* *
22956238 CTTCCTGATTAGTGGCTCTCCTGAG
1 CTTCCTGATTAGTGGCTCGCCTGAA
*
22956263 CTTCCTGA-TA-TGGCTCGCTTGAA
1 CTTCCTGATTAGTGGCTCGCCTGAA
22956286 CTTCC
1 CTTCC
22956291 CAATATATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 15 0.60
24 2 0.08
25 8 0.32
ACGTcount: A:0.13, C:0.30, G:0.21, T:0.36
Consensus pattern (25 bp):
CTTCCTGATTAGTGGCTCGCCTGAA
Found at i:22956365 original size:24 final size:24
Alignment explanation
Indices: 22956333--22956393 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
22956323 GTCTGTTCGA
*
22956333 AGCTACCCGTTATTGGCT-TGTATG
1 AGCTTCCCGTTATTGGCTCT-TATG
22956357 AGCTTCCCGATTA-TGGCTCTTATG
1 AGCTTCCCG-TTATTGGCTCTTATG
22956381 AGCTTCCCGTTAT
1 AGCTTCCCGTTAT
22956394 ATAGCCCGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.09
24 26 0.79
25 4 0.12
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.38
Consensus pattern (24 bp):
AGCTTCCCGTTATTGGCTCTTATG
Found at i:22956446 original size:25 final size:25
Alignment explanation
Indices: 22956368--22956450 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
22956358 GCTTCCCGAT
* * *
22956368 TATGGCTCTTATGAGCTTCCCGTTA
1 TATGGCTCATATAAGCTTCCTGTTA
* * *
22956393 TATAGCCCGA-ATAAGCTTCTTGTTA
1 TATGGCTC-ATATAAGCTTCCTGTTA
22956418 TATGGCTCATATAAGCTTCCTGTTA
1 TATGGCTCATATAAGCTTCCTGTTA
22956443 TATGGCTC
1 TATGGCTC
22956451 GAGAGAGAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 46 0.98
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.39
Consensus pattern (25 bp):
TATGGCTCATATAAGCTTCCTGTTA
Found at i:22957472 original size:31 final size:32
Alignment explanation
Indices: 22957427--22957487 Score: 115
Period size: 31 Copynumber: 1.9 Consensus size: 32
22957417 AGATAATTTT
22957427 AAAGAGTTTTTATTAGGATTCAATTACTCTAG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTAG
22957459 AAAGAG-TTTTATTAGGATTCAATTACTCT
1 AAAGAGTTTTTATTAGGATTCAATTACTCT
22957488 TGTAATTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTAG
Found at i:22963619 original size:31 final size:32
Alignment explanation
Indices: 22963574--22963636 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
22963564 AGATAATTTT
22963574 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
22963606 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
22963637 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:22977522 original size:7 final size:7
Alignment explanation
Indices: 22977510--22977549 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
22977500 AAAAAGAGAG
22977510 ATGAAAA
1 ATGAAAA
22977517 ATG-AAA
1 ATGAAAA
22977523 ATG-AAA
1 ATGAAAA
22977529 ATGAAAA
1 ATGAAAA
22977536 ATGAAAA
1 ATGAAAA
22977543 ATGAAAA
1 ATGAAAA
22977550 TGGAGAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:22977525 original size:6 final size:6
Alignment explanation
Indices: 22977514--22977551 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
22977504 AGAGAGATGA
22977514 AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAATG
22977552 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.58
7 13 0.42
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:22977526 original size:13 final size:13
Alignment explanation
Indices: 22977510--22977551 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
22977500 AAAAAGAGAG
22977510 ATGAAAAATGAAA
1 ATGAAAAATGAAA
22977523 ATG-AAAATGAAAA
1 ATGAAAAATG-AAA
22977536 ATGAAAAATGAAA
1 ATGAAAAATGAAA
22977549 ATG
1 ATG
22977552 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:22978889 original size:87 final size:87
Alignment explanation
Indices: 22978743--22979769 Score: 1705
Period size: 87 Copynumber: 11.8 Consensus size: 87
22978733 AGATCAGTGA
* *
22978743 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * **
22978808 ATTCCTACGTTAACAGTAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
22978830 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
22978895 CTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
22978917 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
22978982 CTTCCTGCGTTAATAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
22979004 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979069 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
22979091 AGATCGAAAACAAAGCCTTGTCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAACATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979156 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
22979178 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGATTAAAGATAGCAAATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
22979243 CTTCTTGCGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
22979265 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
22979330 ATTCCTACGTTAACAGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
22979352 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979417 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
22979439 AGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
** *
22979504 CTTCCTGCGTTAATGGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
22979526 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979591 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
22979613 AGATCGAAAACAAA-CCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979677 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
22979699 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
22979764 CTTCCT
66 CTTCCT
22979770 AAGCGCTAGC
Statistics
Matches: 875, Mismatches: 64, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
86 82 0.09
87 793 0.91
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:22978939 original size:43 final size:43
Alignment explanation
Indices: 22978891--22979026 Score: 100
Period size: 43 Copynumber: 3.1 Consensus size: 43
22978881 ATAACAGATA
22978891 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
* ** * * * * * * *
22978934 TTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGT-TAAAGATAGTAGATC
1 TTGCCTTCC-TGC-GTTAACAACGAAGCAGATCGAAA-ACA--AAACC
*
22978978 TTGCCTTCCTGCGTTAATAACGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
22979021 TTGCCT
1 TTGCCT
22979027 CCATCGGTTG
Statistics
Matches: 63, Mismatches: 21, Indels: 18
0.62 0.21 0.18
Matches are distributed among these distances:
41 3 0.05
42 14 0.22
43 18 0.29
44 12 0.19
45 13 0.21
46 3 0.05
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (43 bp):
TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
Found at i:22979947 original size:44 final size:41
Alignment explanation
Indices: 22979892--22980162 Score: 206
Period size: 44 Copynumber: 6.4 Consensus size: 41
22979882 TTACAAGTCT
*
22979892 TATCTCTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC--AA-AAACCAATCC
** *
22979936 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACC--A-ATCC
* * * * * *
22979980 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ACATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
*
22980021 TATCTCCTTGAAGTTG-AGTGGAGCAGACGAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC-AA-AAACCAATCC
* * * * * *
22980063 TATCTCCCTGAAGTTGCAATGGAGCGGATTAAGACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAAC-CA-ATCC
* * * * *
22980107 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ATATCCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
22980148 TATCTCCCTGAAGTT
1 TATCTCCCTGAAGTT
22980163 ACAGCAGAGA
Statistics
Matches: 184, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
39 1 0.01
40 10 0.05
41 41 0.22
42 27 0.15
43 17 0.09
44 88 0.48
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACCAATCC
Found at i:22980068 original size:127 final size:129
Alignment explanation
Indices: 22979887--22980162 Score: 450
Period size: 127 Copynumber: 2.2 Consensus size: 129
22979877 GGAAATTACA
22979887 AGTCTTATCT-CTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
1 AGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
* *
22979951 GCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
65 GCAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
*
22980016 AGTCTTATCTCCTTGAAGTTG-AGTGGAGCAGAC-GAAGAAACCAATCCTATCTCCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
* * *
22980079 CAATGGAGCGGATTAAGACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
66 CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
* *
22980143 AATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCTTGAAGTT
22980163 ACAGCAGAGA
Statistics
Matches: 138, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
127 106 0.77
128 12 0.09
129 18 0.13
130 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (129 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
Found at i:22980158 original size:85 final size:81
Alignment explanation
Indices: 22979936--22980162 Score: 224
Period size: 85 Copynumber: 2.7 Consensus size: 81
22979926 AAACCAATCC
* * *
22979936 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATCAAAACC--A-ATCTTATCTCCCTGAAGTTGCAATA
* *
22980001 GAGCAGATCACATCCAGTCT
62 GAGCAGATAACACCCAGTCT
* *
22980021 TATCTCCTTGAAGTTG-AGTGGAGCAGA-CGAAGAAACCAATCCTATCTCCCTGAAGTTGCAATG
1 TATCTCC-TGAAGTTGCAGTGGAGCAGATC--A-AAACCAATCTTATCTCCCTGAAGTTGCAATA
* *
22980084 GAGCGGATTAAGACCACAGATCT
62 GAGCAGA-TAACACC-CAG-TCT
* * *
22980107 TATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCCAATCTTATCTCCCTGAAGTT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTT
22980163 ACAGCAGAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
83 27 0.23
84 18 0.15
85 39 0.33
86 23 0.19
87 11 0.09
88 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (81 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTTGCAATAGAGC
AGATAACACCCAGTCT
Found at i:23009450 original size:7 final size:7
Alignment explanation
Indices: 23009438--23009477 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
23009428 AAAAAGAGAG
23009438 ATGAAAA
1 ATGAAAA
23009445 ATG-AAA
1 ATGAAAA
23009451 ATG-AAA
1 ATGAAAA
23009457 ATGAAAA
1 ATGAAAA
23009464 ATGAAAA
1 ATGAAAA
23009471 ATGAAAA
1 ATGAAAA
23009478 TGGAGAGGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:23009453 original size:6 final size:6
Alignment explanation
Indices: 23009442--23009479 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
23009432 AGAGAGATGA
23009442 AAAATG AAAATG AAAATG AAAAATG AAAAATG AAAATG
1 AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAATG
23009480 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.58
7 13 0.42
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:23009454 original size:13 final size:13
Alignment explanation
Indices: 23009438--23009479 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
23009428 AAAAAGAGAG
23009438 ATGAAAAATGAAA
1 ATGAAAAATGAAA
23009451 ATG-AAAATGAAAA
1 ATGAAAAATG-AAA
23009464 ATGAAAAATGAAA
1 ATGAAAAATGAAA
23009477 ATG
1 ATG
23009480 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (13 bp):
ATGAAAAATGAAA
Found at i:23010816 original size:87 final size:87
Alignment explanation
Indices: 23010670--23011697 Score: 1705
Period size: 87 Copynumber: 11.8 Consensus size: 87
23010660 AGATCAGTGA
* *
23010670 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * **
23010735 ATTCCTACGTTAACAGTAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
23010757 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
23010822 CTTCCTGCGTTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
23010844 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
23010909 CTTCCTGCGTTAATAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
23010931 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23010996 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
23011018 AGATCGAAAACAAAGCCTTGTCTCCATCGGTTGCAGTGGAGCTAGTTAAAGATAACATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23011083 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
23011105 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGATTAAAGATAGCAAATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
23011170 CTTCTTGCGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
23011192 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
23011257 ATTCCTACGTTAACAGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
23011279 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23011344 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
23011366 AGATCGAAAACAAAGACTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
** *
23011431 CTTCCTGCGTTAATGGCAAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
23011453 AGATCGAAAACAAAGCCTTGCCTCCATCGATTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23011518 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
23011540 AGATCGAAAACAAAACCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAACAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23011605 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
23011627 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23011692 CTTCCT
66 CTTCCT
23011698 AAGCGCTAGC
Statistics
Matches: 875, Mismatches: 66, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 875 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:23010866 original size:43 final size:43
Alignment explanation
Indices: 23010818--23010953 Score: 100
Period size: 43 Copynumber: 3.1 Consensus size: 43
23010808 ATAACAGATA
23010818 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
* ** * * * * * * *
23010861 TTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGT-TAAAGATAGTAGATC
1 TTGCCTTCC-TGC-GTTAACAACGAAGCAGATCGAAA-ACA--AAACC
*
23010905 TTGCCTTCCTGCGTTAATAACGAAGCAGATCGAAAACAAAACC
1 TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
23010948 TTGCCT
1 TTGCCT
23010954 CCATCGGTTG
Statistics
Matches: 63, Mismatches: 21, Indels: 18
0.62 0.21 0.18
Matches are distributed among these distances:
41 3 0.05
42 14 0.22
43 18 0.29
44 12 0.19
45 13 0.21
46 3 0.05
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (43 bp):
TTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAACC
Found at i:23011875 original size:44 final size:41
Alignment explanation
Indices: 23011820--23012090 Score: 206
Period size: 44 Copynumber: 6.4 Consensus size: 41
23011810 TTACAAGTCT
*
23011820 TATCTCTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC--AA-AAACCAATCC
** *
23011864 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACC--A-ATCC
* * * * * *
23011908 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ACATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
*
23011949 TATCTCCTTGAAGTTG-AGTGGAGCAGACGAAGAAACCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC-AA-AAACCAATCC
* * * * * *
23011991 TATCTCCCTGAAGTTGCAATGGAGCGGATTAAGACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAAC-CA-ATCC
* * * * *
23012035 TATCTCTCTGAAGTTGCAGTAGAGCAGATC-ATATCCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAACCAATCC
23012076 TATCTCCCTGAAGTT
1 TATCTCCCTGAAGTT
23012091 ACAGCAGAGA
Statistics
Matches: 184, Mismatches: 32, Indels: 25
0.76 0.13 0.10
Matches are distributed among these distances:
39 1 0.01
40 10 0.05
41 41 0.22
42 27 0.15
43 17 0.09
44 88 0.48
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAACCAATCC
Found at i:23011996 original size:127 final size:129
Alignment explanation
Indices: 23011815--23012090 Score: 450
Period size: 127 Copynumber: 2.2 Consensus size: 129
23011805 GGAAATTACA
23011815 AGTCTTATCT-CTCTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
1 AGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTT
* *
23011879 GCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
65 GCAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
*
23011944 AGTCTTATCTCCTTGAAGTTG-AGTGGAGCAGAC-GAAGAAACCAATCCTATCTCCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
* * *
23012007 CAATGGAGCGGATTAAGACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCC
66 CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
* *
23012071 AATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCTTGAAGTT
23012091 ACAGCAGAGA
Statistics
Matches: 138, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
127 106 0.77
128 12 0.09
129 18 0.13
130 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (129 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAAGTTG
CAATGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCC
Found at i:23012086 original size:85 final size:81
Alignment explanation
Indices: 23011864--23012090 Score: 224
Period size: 85 Copynumber: 2.7 Consensus size: 81
23011854 AAACCAATCC
* * *
23011864 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATCAAAACC--A-ATCTTATCTCCCTGAAGTTGCAATA
* *
23011929 GAGCAGATCACATCCAGTCT
62 GAGCAGATAACACCCAGTCT
* *
23011949 TATCTCCTTGAAGTTG-AGTGGAGCAGA-CGAAGAAACCAATCCTATCTCCCTGAAGTTGCAATG
1 TATCTCC-TGAAGTTGCAGTGGAGCAGATC--A-AAACCAATCTTATCTCCCTGAAGTTGCAATA
* *
23012012 GAGCGGATTAAGACCACAGATCT
62 GAGCAGA-TAACACC-CAG-TCT
* * *
23012035 TATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCCAATCTTATCTCCCTGAAGTT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTT
23012091 ACAGCAGAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
83 27 0.23
84 18 0.15
85 39 0.33
86 23 0.19
87 11 0.09
88 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (81 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATCAAAACCAATCTTATCTCCCTGAAGTTGCAATAGAGC
AGATAACACCCAGTCT
Found at i:23016352 original size:238 final size:236
Alignment explanation
Indices: 23015885--23016353 Score: 663
Period size: 238 Copynumber: 2.0 Consensus size: 236
23015875 TTTTAGGATA
* *
23015885 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGGCTCAATTGCCACTACTTAATATTCATATGAT
1 TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
* * * *
23015950 AAGGTCATCTTACTTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTTCTTTGT
66 AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
* * * *
23016015 GTGTGTTTCATTTTAGTGAAATACCAAAAAAATTATACTAAAATGGATGTTCTCTCTTTTGTTAA
131 GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
**
23016080 AAATGCTGGAAAGATAGGTTTTGCTGCAAAAGAGATAATTT
196 AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
* * * * *
23016121 TGTTTTCTAAAGAATTGATCTTTGAGGGCTATA-ACTAAACTTTGTCAGTATTTAATATTTATAT
1 TGTTTTCT-AAGAATTGACCTTTGAGGGCTATAGACTAAA--TTGCCACTACTTAATATTCATAT
* *
23016185 GGTAAGATAATCTTAATTAGATCCTTGGCTTCA-TTCTTGGTTTCAATATGTAAAGGTTGTTCCT
63 GATAAGATAATCTTAATTAGATCCTTGGCCTCACTT-TTGGTTTCAATATGTAAAGGTTGTTCCT
* * * * *
23016249 TTGTGTGTGTTTCATTGTAATGAAATTCCAAGACAATGATACTAAAATGGTTGTTGTCTCTTTTG
127 TTGTGTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTG
*
23016314 TGAAAAATGCTGGAAAGATCGCATTTGCTGCAAAAGAGAT
192 TGAAAAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGAT
23016354 CGATGTGGGA
Statistics
Matches: 204, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
236 12 0.06
237 25 0.12
238 167 0.82
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (236 bp):
TGTTTTCTAAGAATTGACCTTTGAGGGCTATAGACTAAATTGCCACTACTTAATATTCATATGAT
AAGATAATCTTAATTAGATCCTTGGCCTCACTTTTGGTTTCAATATGTAAAGGTTGTTCCTTTGT
GTGTGTTTCATTGTAATGAAATACCAAAAAAATGATACTAAAATGGATGTTCTCTCTTTTGTGAA
AAATGCTGGAAAGATAGCATTTGCTGCAAAAGAGATAATTT
Found at i:23026358 original size:14 final size:14
Alignment explanation
Indices: 23026339--23026367 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23026329 GAATGAGAAG
23026339 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
23026353 ACCTGTGATCCCCA
1 ACCTGTGATCCCCA
23026367 A
1 A
23026368 GCAAAACGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.41, G:0.14, T:0.21
Consensus pattern (14 bp):
ACCTGTGATCCCCA
Found at i:23028481 original size:17 final size:18
Alignment explanation
Indices: 23028449--23028482 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23028439 AGAACTCGAA
*
23028449 TGATTTAAACTCAAAATC
1 TGATTCAAACTCAAAATC
23028467 TGATTCAAA-TCAAAAT
1 TGATTCAAACTCAAAAT
23028483 GGCCGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (18 bp):
TGATTCAAACTCAAAATC
Found at i:23030816 original size:261 final size:261
Alignment explanation
Indices: 23030352--23030859 Score: 971
Period size: 261 Copynumber: 1.9 Consensus size: 261
23030342 CTAAAATATT
*
23030352 ATTTATGAGAAAGGATTGTATAAAATTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
1 ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
23030417 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
66 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
* *
23030482 ATAATGAGGAAAAAGTTGATTTGTCATTTTACTATTGAAAATGAATAAAAATGACATGAAATCAC
131 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
23030547 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
196 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
23030612 C
261 C
* *
23030613 ATTTATGAGAAAGGATTTTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGC
1 ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
23030678 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
66 ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
23030743 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
131 ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
23030808 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAAT
196 AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAAT
23030860 TTCAAATTTA
Statistics
Matches: 242, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
261 242 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (261 bp):
ATTTATGAGAAAGGATTGTATAAAACTGTGATTCCACGTCATTCTTAAGAAAATAACAAATCAGA
ATTTTCCTCCTAATTTTCAGCATTTTCCTTCTTAAAAAATTCAAATCCAACTAAAAATGCTAAAA
ATAATAAGGAAAAAGTTGATTTGTCATTTTACTATTAAAAATGAATAAAAATGACATGAAATCAC
AGTTTCATATAATCCCTTCTCATTATTCATTCTCTAATTTACACTATTAAATAACGCCTCTATTC
C
Found at i:23033832 original size:16 final size:16
Alignment explanation
Indices: 23033808--23033844 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23033798 TTAAAAACCC
*
23033808 AAATGATTTGAACTCA
1 AAATTATTTGAACTCA
*
23033824 AAATTATTTGAATTCA
1 AAATTATTTGAACTCA
23033840 AAATT
1 AAATT
23033845 GATCCAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (16 bp):
AAATTATTTGAACTCA
Found at i:23039821 original size:31 final size:29
Alignment explanation
Indices: 23039786--23039848 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
23039776 TTTTTAATAT
*
23039786 AAATAATAAAAAGAATTATTAAAAATTTATA
1 AAATAAT-AAAAGAACTATTAAAAA-TTATA
* *
23039817 AAATAATATAATAACTATTAAAAATTATA
1 AAATAATAAAAGAACTATTAAAAATTATA
23039846 AAA
1 AAA
23039849 AAAATATAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 8 0.28
30 14 0.48
31 7 0.24
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (29 bp):
AAATAATAAAAGAACTATTAAAAATTATA
Found at i:23040495 original size:19 final size:18
Alignment explanation
Indices: 23040455--23040495 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
23040445 AAAATTAACC
*
23040455 TTTTTTATATTTTCAATT
1 TTTTTTATATTTTCAATA
*
23040473 TTTTTTATAATTTTTAATA
1 TTTTTTAT-ATTTTCAATA
23040492 TTTT
1 TTTT
23040496 AAATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTTATATTTTCAATA
Found at i:23053171 original size:25 final size:26
Alignment explanation
Indices: 23053138--23053187 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
23053128 TAGTAGTTTC
23053138 TTCAAAAAAAAA-TTCAAAAAAAAAT
1 TTCAAAAAAAAATTTCAAAAAAAAAT
23053163 TTCAAAAAAAAATTTCAAAAAAAAA
1 TTCAAAAAAAAATTTCAAAAAAAAA
23053188 ATTTGGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (26 bp):
TTCAAAAAAAAATTTCAAAAAAAAAT
Found at i:23053191 original size:14 final size:13
Alignment explanation
Indices: 23053138--23053187 Score: 93
Period size: 13 Copynumber: 3.9 Consensus size: 13
23053128 TAGTAGTTTC
23053138 TTCAAAAAAAAA-
1 TTCAAAAAAAAAT
23053150 TTCAAAAAAAAAT
1 TTCAAAAAAAAAT
23053163 TTCAAAAAAAAAT
1 TTCAAAAAAAAAT
23053176 TTCAAAAAAAAA
1 TTCAAAAAAAAA
23053188 ATTTGGTTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 12 0.32
13 25 0.68
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
TTCAAAAAAAAAT
Found at i:23053248 original size:15 final size:15
Alignment explanation
Indices: 23053228--23053284 Score: 87
Period size: 15 Copynumber: 3.6 Consensus size: 15
23053218 GATATCAAGT
23053228 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
23053243 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
23053258 TGAAAAAAGAAATTTTCG
1 TGAAAAAA-AAA--TTCG
23053276 TGAAAAAAA
1 TGAAAAAAA
23053285 GAAGAAGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
15 23 0.59
16 3 0.08
17 1 0.03
18 12 0.31
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:23053253 original size:18 final size:18
Alignment explanation
Indices: 23053230--23053284 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
23053220 TATCAAGTTG
23053230 AAAAAAAAATTCGTG---
1 AAAAAAAAATTCGTGAAA
23053245 AAAAAAAAATTCGTGAAA
1 AAAAAAAAATTCGTGAAA
* **
23053263 AAAGAAATTTTCGTGAAA
1 AAAAAAAAATTCGTGAAA
23053281 AAAA
1 AAAA
23053285 GAAGAAGCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 15 0.45
18 18 0.55
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.20
Consensus pattern (18 bp):
AAAAAAAAATTCGTGAAA
Found at i:23054652 original size:17 final size:17
Alignment explanation
Indices: 23054630--23054664 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
23054620 TGAGCAAGCG
23054630 CCAAATCGCACGAGAGA
1 CCAAATCGCACGAGAGA
23054647 CCAAATCGCACGAGAGA
1 CCAAATCGCACGAGAGA
23054664 C
1 C
23054665 ATAAGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.31, G:0.23, T:0.06
Consensus pattern (17 bp):
CCAAATCGCACGAGAGA
Done.