Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 92 of 230
Found at i:25764954 original size:7 final size:7
Alignment explanation
Indices: 25764935--25764984 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
25764925 TTAGCCTCTC
25764935 CATTTTT
1 CATTTTT
25764942 -ACTTTTT
1 CA-TTTTT
25764949 CA-TTTT
1 CATTTTT
25764955 CATTTTT
1 CATTTTT
*
25764962 CA-CTTT
1 CATTTTT
25764968 CATTTTTT
1 CA-TTTTT
25764976 CATTTTT
1 CATTTTT
25764983 CA
1 CA
25764985 CCCTTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
6 12 0.33
7 18 0.50
8 6 0.17
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (7 bp):
CATTTTT
Found at i:25764960 original size:13 final size:14
Alignment explanation
Indices: 25764944--25764981 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
25764934 CCATTTTTAC
25764944 TTTTTCATTTTCA-
1 TTTTTCATTTTCAT
*
25764957 TTTTTCACTTTCAT
1 TTTTTCATTTTCAT
25764971 TTTTTCATTTT
1 TTTTTCATTTT
25764982 TCACCCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTTCATTTTCAT
Found at i:25770291 original size:20 final size:18
Alignment explanation
Indices: 25770266--25770305 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 18
25770256 ATGAAATGAA
25770266 ATATTTAATATAAATAATAT
1 ATATTT-ATAT-AATAATAT
25770286 ATATTTATATAATAATAT
1 ATATTTATATAATAATAT
25770304 AT
1 AT
25770306 GTAAAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 10 0.50
19 4 0.20
20 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTATATAATAATAT
Found at i:25770667 original size:5 final size:5
Alignment explanation
Indices: 25770657--25770713 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
25770647 GATACTATAT
* * * *
25770657 AATAA AATAA AAT-A ATTAA TAATAA AATAA TATATA TATAT AATAA AATAA
1 AATAA AATAA AATAA AATAA -AATAA AATAA AATA-A AATAA AATAA AATAA
25770708 AATAA A
1 AATAA A
25770714 TATATATAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 3 0.07
5 31 0.72
6 9 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (5 bp):
AATAA
Found at i:25770701 original size:21 final size:20
Alignment explanation
Indices: 25770652--25770719 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 20
25770642 AAAAAGATAC
25770652 TATATAATAAAATAAAATAA
1 TATATAATAAAATAAAATAA
*
25770672 T-TAATAATAAAATAATATATA
1 TAT-ATAATAAAATAAAATA-A
25770693 TATATAATAAAATAAAATAAA
1 TATATAATAAAATAAAAT-AA
25770714 TATATA
1 TATATA
25770720 TAACGACTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 1 0.02
20 16 0.38
21 23 0.55
22 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TATATAATAAAATAAAATAA
Found at i:25776111 original size:40 final size:40
Alignment explanation
Indices: 25776014--25776197 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
25776004 TTGAATGCTG
* * * *
25776014 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
25776053 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
25776094 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
25776134 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
25776174 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25776198 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:25776154 original size:80 final size:81
Alignment explanation
Indices: 25776014--25776194 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
25776004 TTGAATGCTG
* *
25776014 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
25776078 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* **
25776094 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
25776155 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
25776174 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
25776195 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:25776218 original size:39 final size:38
Alignment explanation
Indices: 25776015--25776234 Score: 165
Period size: 40 Copynumber: 5.6 Consensus size: 38
25776005 TGAATGCTGT
* * * * *
25776015 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * *
25776055 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * * *
25776095 TCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
25776135 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
25776174 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
25776214 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
25776235 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 108 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:25784066 original size:40 final size:40
Alignment explanation
Indices: 25783969--25784152 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
25783959 TTGAATGCTG
* * * *
25783969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
25784008 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
25784049 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
25784089 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
25784129 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25784153 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:25784109 original size:80 final size:81
Alignment explanation
Indices: 25783969--25784149 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
25783959 TTGAATGCTG
* *
25783969 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
25784033 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* **
25784049 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
25784110 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
25784129 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
25784150 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:25784173 original size:39 final size:38
Alignment explanation
Indices: 25783970--25784189 Score: 165
Period size: 40 Copynumber: 5.6 Consensus size: 38
25783960 TGAATGCTGT
* * * * *
25783970 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * *
25784010 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * * *
25784050 TCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
25784090 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
25784129 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
25784169 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
25784190 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 108 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:25786215 original size:47 final size:48
Alignment explanation
Indices: 25786162--25786319 Score: 123
Period size: 47 Copynumber: 3.3 Consensus size: 48
25786152 TTGGACTTAG
25786162 AAAATATAAAAAT-AAAATATTTTAAATATTTAAAAATAATTTAATAT
1 AAAATATAAAAATAAAAATATTTTAAATATTTAAAAATAATTTAATAT
* ** *
25786209 AAAATATTTAATTTCAAAATATAATTTAAA-A-TTAAAAAT--TTTAATAT
1 AAAATA-TAAAAAT-AAAA-ATATTTTAAATATTTAAAAATAATTTAATAT
* * *
25786256 AATTTAATATAAAACTAAAAATATTTTCATATAATTT-AAAATAATTTAATTT
1 AA---AATATAAAAATAAAAATATTTT-AAAT-ATTTAAAAATAATTTAATAT
*
25786308 AATATA-AAAAAT
1 AAAATATAAAAAT
25786320 TATATTAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 25
0.70 0.10 0.20
Matches are distributed among these distances:
47 22 0.26
48 15 0.17
49 15 0.17
50 14 0.16
51 11 0.13
52 9 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (48 bp):
AAAATATAAAAATAAAAATATTTTAAATATTTAAAAATAATTTAATAT
Found at i:25786310 original size:20 final size:20
Alignment explanation
Indices: 25786254--25786320 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
25786244 AAATTTTAAT
*
25786254 ATAATTTAATATAAAACTAAAA
1 ATAATTTAATATAATA-T-AAA
* * *
25786276 ATATTTTCATATAATTTAAA
1 ATAATTTAATATAATATAAA
*
25786296 ATAATTTAATTTAATATAAA
1 ATAATTTAATATAATATAAA
25786316 A-AATT
1 ATAATT
25786321 ATATTAAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
19 4 0.11
20 20 0.54
21 1 0.03
22 12 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATTTAATATAATATAAA
Found at i:25786409 original size:23 final size:22
Alignment explanation
Indices: 25786358--25786410 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
25786348 ATTTTTTATT
* *
25786358 TTTATTAAATTATGTTTAATAA
1 TTTATTAAAATATGTTAAATAA
*
25786380 TTATATTAAAATATGATTAAATTA
1 TT-TATTAAAATATG-TTAAATAA
25786404 TTTATTA
1 TTTATTA
25786411 TTTATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTATTAAAATATGTTAAATAA
Found at i:25786412 original size:7 final size:7
Alignment explanation
Indices: 25786400--25786438 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
25786390 ATATGATTAA
25786400 ATTATTT
1 ATTATTT
25786407 ATTATTT
1 ATTATTT
25786414 ATTATTT
1 ATTATTT
25786421 ATTATTT
1 ATTATTT
25786428 ATTATTT
1 ATTATTT
25786435 ATTA
1 ATTA
25786439 AATTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
ATTATTT
Found at i:25786447 original size:21 final size:21
Alignment explanation
Indices: 25786395--25786449 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
25786385 TTAAAATATG
25786395 ATTAAA-T-TATTTATTATTT
1 ATTAAATTATATTTATTATTT
*
25786414 ATT-ATTTATTATTTATTATTT
1 ATTAAATTA-TATTTATTATTT
25786435 ATTAAATTATATTTA
1 ATTAAATTATATTTA
25786450 ATAATAATCC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 4 0.13
21 21 0.70
22 4 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTAAATTATATTTATTATTT
Found at i:25786655 original size:16 final size:16
Alignment explanation
Indices: 25786634--25786672 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
25786624 TGAATTACTG
* *
25786634 ATTACACCTCTATTCT
1 ATTACAACTCTATTCC
25786650 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
25786666 ATTACAA
1 ATTACAA
25786673 TGAACCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:25788657 original size:21 final size:20
Alignment explanation
Indices: 25788609--25788661 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
25788599 GATTAAGACT
25788609 TGAACTTGAATG--TTTAACA
1 TGAA-TTGAATGTATTTAACA
25788628 TGAATTGAATGTATTTAACA
1 TGAATTGAATGTATTTAACA
*
25788648 TTAGATTGAATGTA
1 TGA-ATTGAATGTA
25788662 AAAATGATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 7 0.23
19 4 0.13
20 9 0.30
21 10 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (20 bp):
TGAATTGAATGTATTTAACA
Found at i:25789736 original size:15 final size:16
Alignment explanation
Indices: 25789716--25789745 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
25789706 AAGAATATTA
25789716 TTTAAAA-TTATTATG
1 TTTAAAATTTATTATG
25789731 TTTAAAATTTATTAT
1 TTTAAAATTTATTAT
25789746 TAAAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTAAAATTTATTATG
Found at i:25800588 original size:23 final size:23
Alignment explanation
Indices: 25800560--25800607 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
25800550 CCCCATGAGT
25800560 GTTAGTGCAATAGGTGGTTACGA
1 GTTAGTGCAATAGGTGGTTACGA
25800583 GTTAGTGCAATAGGTGGTTACGA
1 GTTAGTGCAATAGGTGGTTACGA
25800606 GT
1 GT
25800608 ATATTTAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.08, G:0.35, T:0.31
Consensus pattern (23 bp):
GTTAGTGCAATAGGTGGTTACGA
Found at i:25803611 original size:112 final size:112
Alignment explanation
Indices: 25803432--25803686 Score: 417
Period size: 112 Copynumber: 2.3 Consensus size: 112
25803422 GTATCTCTCT
*
25803432 CATGAACTTATACATAATTTCATGTATCGTGATATGCCAATTTGATTTACACATTATTGAAGGCT
1 CATGGACTTATACATAATTTCATGTATCGTGATATGCCAATTTGATTTACACATTATTGAAGGCT
* * * *
25803497 ACACCATGAACATACATATAG-ACATATCTTGCCATGGGTCTTAGCCA
66 ACACCATGAACACACATACAGAAC-TATCTTACCATGGGTCTCAGCCA
*
25803544 CATGGACTTATACGTAATTTCATGTATCGTGATATGCCAATTTGATTTACACATTATTGAAGGCT
1 CATGGACTTATACATAATTTCATGTATCGTGATATGCCAATTTGATTTACACATTATTGAAGGCT
25803609 ACACCATGAACACACATACAGAACTATCTTACCATGGGTCTCAGCCA
66 ACACCATGAACACACATACAGAACTATCTTACCATGGGTCTCAGCCA
*
25803656 CATGGACTTATACAT-A-TTCATGTATTGTGAT
1 CATGGACTTATACATAATTTCATGTATCGTGAT
25803687 CTGTCAATCT
Statistics
Matches: 134, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
110 14 0.10
111 1 0.01
112 117 0.87
113 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (112 bp):
CATGGACTTATACATAATTTCATGTATCGTGATATGCCAATTTGATTTACACATTATTGAAGGCT
ACACCATGAACACACATACAGAACTATCTTACCATGGGTCTCAGCCA
Found at i:25804501 original size:20 final size:21
Alignment explanation
Indices: 25804465--25804503 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25804455 GACTAAACCG
25804465 AAAACTTAAAGAATTTTTCGC
1 AAAACTTAAAGAATTTTTCGC
*
25804486 AAAACTTTAA-AATTTTTC
1 AAAACTTAAAGAATTTTTC
25804504 CTAGGTGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAACTTAAAGAATTTTTCGC
Found at i:25807175 original size:381 final size:381
Alignment explanation
Indices: 25806472--25807230 Score: 1410
Period size: 381 Copynumber: 2.0 Consensus size: 381
25806462 TGAAATTCAT
*
25806472 GAAATTTAATTTTCACTCCAAGCCTAGAAATTTTCATATATAACACTAGCAACCCATGAATTCCA
1 GAAATTTAATTTTCACTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGAATTCCA
* * * *
25806537 TAAAATTTAGAATTTACCATGAATTCAACGTCTTTTCAATTTAATTCCTAAATCACGATTTCATC
66 TAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGATGTCATA
25806602 AAAATTCTTTAATAAAATACTTTTAAATACCCATAAACATCTCAAATTAATTATCTAATAACTAA
131 AAAATTCTTTAATAAAATACTTTTAAATACCCATAAACATCTCAAATTAATTATCTAATAACTAA
*
25806667 AATCATATGAACTCATCAATGGTAACTTCCAATATTTTCAATAAAATCAAAAACTAAGGTAAAGG
196 AATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGGTAAAGG
25806732 TTAACTGGACCTAAATGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGAATTGAA
261 TTAACTGGACCTAAATGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGAATTGAA
25806797 CTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCTATTCGC
326 CTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCTATTCGC
*
25806853 GAAATTTAATTTTCATTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGAATTCCA
1 GAAATTTAATTTTCACTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGAATTCCA
25806918 TAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGATGTCATA
66 TAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGATGTCATA
* * *
25806983 AAAATTCTTTAATAAAATACTTTTAAATACCCATACACATCTCAAATTCATTCTCTAATAACTAA
131 AAAATTCTTTAATAAAATACTTTTAAATACCCATAAACATCTCAAATTAATTATCTAATAACTAA
25807048 AATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGGTAAAGG
196 AATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGGTAAAGG
* *
25807113 TTAATTGGACCTAATTGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGAATTGAA
261 TTAACTGGACCTAAATGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGAATTGAA
25807178 CTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCTATT
326 CTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCTATT
25807231 TTAGAACTGA
Statistics
Matches: 366, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
381 366 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (381 bp):
GAAATTTAATTTTCACTCCAAGCCTAGAAATTTTCATACATAACACTAGCAACCCATGAATTCCA
TAAAATTTAGAATTTACCATGAATTCAACATCTTTTCAATTTAATCCCTAAATCACGATGTCATA
AAAATTCTTTAATAAAATACTTTTAAATACCCATAAACATCTCAAATTAATTATCTAATAACTAA
AATCATATGAACTCATCAATGGTAACTTCCAAGATTTTCAATAAAATCAAAAACTAAGGTAAAGG
TTAACTGGACCTAAATGTAACAATCACAAAAACATAAAAATTGCAAGAAACGGGTAAGAATTGAA
CTTATAAGAAGCAAAAAATGAAAAACCAGCCTAAACCCTCTTCAATGTCTATTCGC
Found at i:25810844 original size:9 final size:9
Alignment explanation
Indices: 25810830--25810860 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
25810820 GTCTCCCACG
25810830 TTAGGGTTT
1 TTAGGGTTT
25810839 TTAGGGTTT
1 TTAGGGTTT
25810848 TTAGGGTTT
1 TTAGGGTTT
25810857 TTAG
1 TTAG
25810861 AGAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.13, C:0.00, G:0.32, T:0.55
Consensus pattern (9 bp):
TTAGGGTTT
Found at i:25811215 original size:126 final size:124
Alignment explanation
Indices: 25810974--25811540 Score: 629
Period size: 126 Copynumber: 4.5 Consensus size: 124
25810964 GATAAAATCA
* * * * * * *
25810974 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCACCCAT-GTGTACGCGCTTTTGCTATAG
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCC-TCGTGGACGCGCTTTTGCTACAG
* * * *
25811038 TAGGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTTAAAAAACACTTC
65 TAGGTCC-TGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
25811099 AAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCGCTCCCTCGTGGATGCGCTTTTACTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGT
* * * * * * *
25811164 TGGTCTTGGAAGAAATAATTTCGAGTTGACATTTTTGAGCAAATAGTTTAAAAAATGCTTC
66 AGGTCCT-GAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * ** * * *
25811225 AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGTGCCCACATGGACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGT
* * * * *
25811290 ACGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAGCAACGCTGC
66 AGGTCCTG-AAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAA-AAACGCTTC
* * * *
25811351 AAGCAGCATACTATT-TGAGAAGAATTTGTGAAATTGCACCCTCGTGGACGCGCTTTTGCTATAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAG
* * *
25811415 TTGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCT-GAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
25811475 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCAT-ATGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCC-TCGTGGACGCGCTTTTGCTACAG
25811539 TA
65 TA
25811541 ACATGTTTGG
Statistics
Matches: 368, Mismatches: 65, Indels: 19
0.81 0.14 0.04
Matches are distributed among these distances:
123 2 0.01
124 61 0.17
125 99 0.27
126 203 0.55
127 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (124 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:25811433 original size:251 final size:250
Alignment explanation
Indices: 25810974--25811540 Score: 728
Period size: 251 Copynumber: 2.3 Consensus size: 250
25810964 GATAAAATCA
* * * * * * * * *
25810974 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCACCCATGTGTACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGCGCCCATATGGACGCGCTTTTGCTACAGT
* * *
25811039 AGGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTTAAAAAACACTTCAAGCA
66 ACGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTATAAAAAACACTGCAAGCA
* * * *
25811104 GGATGCTTTGTGAGAAGAATTTGTGAAATCGCTCCCTCGTGGATGCGCTTTTACTACAGTTGGTC
131 GCATACTTTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTTGGTC
* * *
25811169 TTGGAAGAAATAATTTCGAGTTGACATTTTTGAGCAAATAGTTTAAAAAAT-GCTTC
196 CTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAG--TAAAAAATCGCTTC
* * *
25811225 AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGTGCCCACATGGACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGCGCCCATATGGACGCGCTTTTGCTACAGT
* * * * * *
25811290 ACGTCC-TGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAGCAACGCTGCAAG
66 ACGTCCTTG-AAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTATAAA-AAACACTGCAAG
* * *
25811354 CAGCATACTATT-TGAGAAGAATTTGTGAAATTGCACCCTCGTGGACGCGCTTTTGCTATAGTTG
129 CAGCATACT-TTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTTG
* * *
25811418 GTCCTGGAA-AAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTC
193 GTCCTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAGTAAAAAATCGCTTC
* * *
25811475 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATATGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGCGCCCATATGGACGCGCTTTTGCTACAGT
25811540 A
66 A
25811541 ACATGTTTGG
Statistics
Matches: 272, Mismatches: 40, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
249 7 0.03
250 67 0.25
251 125 0.46
252 71 0.26
253 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTATGAAATCGCGCCCATATGGACGCGCTTTTGCTACAGT
ACGTCCTTGAAAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTATAAAAAACACTGCAAGCA
GCATACTTTGTGAGAAGAATTTGTGAAATCGCACCCTCGTGGACGCGCTTTTACTACAGTTGGTC
CTGGAAGAAATAATTTCGACTTGACATTTCTGAGCAAATAGTAAAAAATCGCTTC
Found at i:25814632 original size:22 final size:22
Alignment explanation
Indices: 25814591--25815618 Score: 1124
Period size: 22 Copynumber: 47.7 Consensus size: 22
25814581 TCAAATTATA
25814591 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
25814612 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814634 TTTAAGTTAAGGGTTTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814656 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814678 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814699 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814721 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814742 TTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814764 TTTAAGTTAAGGGTCTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814786 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814807 TTCAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814828 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25814850 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
25814871 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814893 TTAAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814915 TTAAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**
25814937 TTTAAGTTAAAAGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25814959 TTTAATTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
25814980 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25815002 TTAAAGTTAA-GGTTTAAGGTTTT
1 TTTAAGTTAAGGGTTT-AGG-GTT
*
25815025 CAGTTTAAAGGTTAAAGG-TTAGGGTT
1 ---TTT-AA-GTTAAGGGTTTAGGGTT
* *
25815051 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815073 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815094 TTTAAGTTAAGGGTTTAGGGAT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815116 TTTATGTTAAAGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25815138 TTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815159 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815180 TTTATGTTATGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25815201 TTTAAGTTAAAGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815223 TTAAAGTTAAAGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815245 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815266 TTCCAA-TTAAGGG-TTAGGG-T
1 TT-TAAGTTAAGGGTTTAGGGTT
* *
25815286 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815308 TTTAATTTAAAGG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815329 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815351 TTTAAGTTAAGGGTCTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
25815372 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815393 TTTAGGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815413 TTTAGGTTAAAGGTTTAGGCTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
25815435 TTTAATTTAA-GGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815456 TTTAATTTAAGAGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815478 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815499 TTCAGGTTAAGGG-TTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815520 TTTAGGTTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815542 TTTAATTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
25815562 TTTAAGTTAAAGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
25815582 TTTAGGTTAAGGGGTTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
25815604 TTTAAGTTAAGGGTT
1 TTTAAGTTAAGGGTT
25815619 AGGATTAGGG
Statistics
Matches: 865, Mismatches: 110, Indels: 63
0.83 0.11 0.06
Matches are distributed among these distances:
19 1 0.00
20 58 0.07
21 360 0.42
22 423 0.49
23 5 0.01
26 4 0.00
27 5 0.01
28 7 0.01
29 2 0.00
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:25814659 original size:43 final size:43
Alignment explanation
Indices: 25814591--25815618 Score: 1014
Period size: 43 Copynumber: 23.8 Consensus size: 43
25814581 TCAAATTATA
25814591 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
25814634 TTTAAGTTAAGGGTTTAGGGGTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTA-GGGTTTTAAGTTAAGGGTTTAGGGTT
* *
25814678 TTTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
25814721 TTTAATTTAAGGG-TTAGGGTTTTAAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* *
25814764 TTTAAGTTAAGGGTCTAGGATTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
25814807 TTCAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
25814850 TTTAGGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * *
25814893 TTAAAGTTAAGGGTCTAGGGTTTTAAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
** * *
25814937 TTTAAGTTAAAAGTTTAGGGTTTTTAATTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
25814980 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-GGTTTAAGGTTTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTT-AGG-GTT
* * *
25815025 CAGTTTAAAGGTTAAAGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 ---TTT-AA-GTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
25815073 TTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGAT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * *
25815116 TTTATGTTAAAGGTCTAGGGTTTTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
25815159 TTTAGGTTAAGGG-TTAGGGTTTTTATGTTATGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * *
25815201 TTTAAGTTAAAGGTTTAAGGTTTTAAAGTTAAAGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
*
25815245 TTAAAGTTAA-GGTTTAGGGTTTTCCAA-TTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTTTT--AAGTTAAGGGTTTAGGGTT
* * * * *
25815286 TTTAGGTTAAGGGTTTAAGGTTTTTAATTTAAAGG-TTAGTGTT
1 TTTAAGTTAAGGGTTT-AGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
25815329 TTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGG-T
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
25815372 TTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
25815413 TTTAGGTTAAAGGTTTAGGCTTTTTAATTTAA-GGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGG-GTTTTAAGTTAAGGGTTTAGGGTT
* * *
25815456 TTTAATTTAAGAGTTTAAGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * * *
25815499 TTCAGGTTAAGGG-TTAGGATTTTTAGGTTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTAGG-GTTTTAAGTTAAGGGTTTAGGGTT
* *
25815542 TTTAATTTAAGGG-TTAGGGTTTTAAGTTAAAGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
25815582 TTTAGGTTAAGGGGTTAGGGGTTTTAAGTTAAGGGTT
1 TTTAAGTTAAGGGTTTA-GGGTTTTAAGTTAAGGGTT
25815619 AGGATTAGGG
Statistics
Matches: 823, Mismatches: 118, Indels: 88
0.80 0.11 0.09
Matches are distributed among these distances:
40 12 0.01
41 38 0.05
42 161 0.20
43 424 0.52
44 139 0.17
45 12 0.01
48 5 0.01
49 16 0.02
50 16 0.02
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
Found at i:25815060 original size:28 final size:28
Alignment explanation
Indices: 25815002--25815065 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
25814992 GTTTAGGGTT
*
25815002 TTAAA-GTTAAGGTTTAAGGTTTTCAGT
1 TTAAAGGTTAAGGTTTAAGGTTTTCAGG
* *
25815029 TTAAAGGTTAAAGG-TTAGGGTTTTTAGG
1 TTAAAGGTT-AAGGTTTAAGGTTTTCAGG
*
25815057 TTAAGGGTT
1 TTAAAGGTT
25815066 TATGGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 5 0.16
28 22 0.71
29 4 0.13
ACGTcount: A:0.28, C:0.02, G:0.28, T:0.42
Consensus pattern (28 bp):
TTAAAGGTTAAGGTTTAAGGTTTTCAGG
Found at i:25815645 original size:62 final size:62
Alignment explanation
Indices: 25814592--25815621 Score: 404
Period size: 64 Copynumber: 16.0 Consensus size: 62
25814582 CAAATTATAT
* * * *
25814592 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGG-GTTTAGGGTTTTTAAGTTAAGGGTTTAGGGGT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGAG-TTAGGGGTTTTAAGTTAAGGG-TTA-GGGT
25814656 -
62 A
* * * *
25814656 TTAAAGTTAAGGGTTTAGGGTTTTTAGGTTAAGG-GTTAGGGTTTTTAGGTTAAGGGTTTAGGGT
1 TT-AAGTTAAAGG-TTAAGG-TTTTAGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGG-TTAGGG-
*
25814720 TT
61 TA
* * * * * * *
25814722 TTAATTTAAGGGTTAGGGTTTTAAAGTTAAGG-GTTTAGGGTTTTTAAGTTAAGGGTCTAGGATT
1 TTAAGTTAAAGGTTAAGGTTTT-AGGTTAAGGAG-TTAGGGGTTTTAAGTTAAGGGT-TAGGGTA
* * * *
25814786 TTAAAGTT-AAGGTTTAGGGTTTTCAGGTTAAGG-GTTAGGGTTTTTAGGTTAAGGGTTTATGGT
1 TT-AAGTTAAAGG-TTAAGGTTTT-AGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGG-TTA-GGG
*
25814849 TT
61 TA
* * * *
25814851 TTAGGTTAAGGGTTAGGGTTTTTAAGTTAAGG-GTTTA-GGGTTTTAAAGTTAAGGGTCTAGGGT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGAG-TTAGGGGTTTT-AAGTTAAGGGT-TAGGGT
*
25814914 T
62 A
* * * * * *
25814915 TTAAAGTT-AAGGTTTTAGGGTTTTTAAGTTAA-AAGTTTAGGGTTTTTAATTTAAAGGTTAGGG
1 TT-AAGTTAAAGG--TTAAGG-TTTTAGGTTAAGGAG-TTAGGGGTTTTAAGTTAAGGGTTAGGG
*
25814978 TTT
61 -TA
* * * * * * *
25814981 TTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGG-TTTAAGGTTTTCAGTTTAAAGGTTAAAGGTT
1 TTAAGTTAAAGG-TTAAGGTTTT-AGGTTAAGGAGTT-AGG-----GGTTTTAA-GTTAAGGGTT
*
25815045 AGGGTTT
57 AGGG-TA
* * * ** *
25815052 TTAGGTTAAGGGTTTATGGTTTTTAATTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTTAGGGAT
1 TTAAGTTAAAGG-TTAAGG-TTTTAGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGG-TTAGGG-T
*
25815116 T
62 A
* * * * * * *
25815117 TTATGTTAAAGGTCTAGGGTTTTAAAGTTAAAG-GTTAGGGTTTTTAGGTTAAGGGTTAGGGTTT
1 TTAAGTTAAAGGT-TAAGGTTTT-AGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGGTTAGGG-TA
* ** * * * *
25815181 TTATGTTATGGGTTAAGGTTTTTAAGTTAAAGG-TTTA-AGGTTTTAAAGTTAAAGGTCTAGGGT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTT-AAGGAGTTAGGGGTTTT-AAGTTAAGGGT-TAGGGT
*
25815244 T
62 A
* * *
25815245 TTAAAGTT-AAGGTTTAGGGTTTTCCA-ATTAAGG-GTTA-GGGTTTTAGGTTAAGGGTTTAAGG
1 TT-AAGTTAAAGG-TTAAGGTTTT--AGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGG-TT-AGG
* *
25815306 TTT
60 GTA
* * * *
25815309 TTAATTTAAAGGTT-AGTGTTTTTAAGTTAAAGG-TTTAGGGTTTTTAAGTTAAGGGTCTAGGGT
1 TTAAGTTAAAGGTTAAG-G-TTTTAGGTT-AAGGAGTTAGGGGTTTTAAGTTAAGGGT-TAGGGT
*
25815372 T
62 A
* * * * * *
25815373 TTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGG-GTTA-GGGTTTTAGGTTAAAGGTTTAGGCTTT
1 TTAAGTTAAAGGTTAAGG-TTTTAGGTTAAGGAGTTAGGGGTTTTAAGTT-AAGGGTTAGG-GTA
* * ** * *
25815436 TTAA-TTTAAGGTTTAGTGTTTTTAATTTAA-GAGTTTA-AGGTTTTAAAGTTAAGGTTTAGGGT
1 TTAAGTTAAAGGTTAAG-G-TTTTAGGTTAAGGAG-TTAGGGGTTTT-AAGTTAAGGGTTAGGGT
*
25815498 T
62 A
* * * * * * *
25815499 TTCAGGTTAAGGGTT-AGGATTTTTAGGTTAAGGATTTATGGTTTTTAATTTAAGGGTTAGGGTT
1 TT-AAGTTAAAGGTTAAGG--TTTTAGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGGTTAGGGTA
* *
25815563 TTAAGTTAAAGGTTAGGGTTTTAGGTTAAGGGGTTAGGGGTTTTAAGTTAAGGGTTAGG
1 TTAAGTTAAAGGTTAAGGTTTTAGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGGTTAGG
25815622 ATTAGGGTTT
Statistics
Matches: 791, Mismatches: 109, Indels: 134
0.76 0.11 0.13
Matches are distributed among these distances:
62 61 0.08
63 81 0.10
64 270 0.34
65 256 0.32
66 62 0.08
67 6 0.01
70 8 0.01
71 43 0.05
72 4 0.01
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (62 bp):
TTAAGTTAAAGGTTAAGGTTTTAGGTTAAGGAGTTAGGGGTTTTAAGTTAAGGGTTAGGGTA
Found at i:25815911 original size:21 final size:21
Alignment explanation
Indices: 25815887--25815933 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
25815877 CTTTGTCCAG
*
25815887 CTTCTGGCGGCGG-TTGTGGTT
1 CTTCTGGCGG-GGATTCTGGTT
*
25815908 CTTCCGGCGGGGATTCTGGTT
1 CTTCTGGCGGGGATTCTGGTT
25815929 CTTCT
1 CTTCT
25815934 AGTAGGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.02, C:0.23, G:0.36, T:0.38
Consensus pattern (21 bp):
CTTCTGGCGGGGATTCTGGTT
Found at i:25816217 original size:18 final size:18
Alignment explanation
Indices: 25816191--25816233 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
25816181 GACTCGAAAA
* *
25816191 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
25816209 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
25816227 AGGAAAC
1 AGGAAAC
25816234 GCACTTAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:25816851 original size:7 final size:7
Alignment explanation
Indices: 25816831--25816872 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
25816821 AAATATTAGT
25816831 TATATAC
1 TATATAC
25816838 -ATAATAC
1 TAT-ATAC
25816845 TATATAC
1 TATATAC
*
25816852 TAAATAC
1 TATATAC
*
25816859 TAAATAC
1 TATATAC
25816866 TATATAC
1 TATATAC
25816873 CAATCGACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 2 0.06
7 27 0.87
8 2 0.06
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (7 bp):
TATATAC
Found at i:25817078 original size:20 final size:20
Alignment explanation
Indices: 25817041--25817078 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25817031 TTTATTTTTA
*
25817041 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
25817061 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
25817079 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:25817971 original size:51 final size:51
Alignment explanation
Indices: 25817927--25818024 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
25817917 AATTATTTAA
25817927 AAATAGGGATTT-ACGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTGA-GAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * *
25817978 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
25818025 GAGGAAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
51 40 0.95
52 2 0.05
ACGTcount: A:0.45, C:0.04, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:25818000 original size:11 final size:11
Alignment explanation
Indices: 25817986--25818062 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
25817976 ATAAATATGG
25817986 ATTTGAGAGAA
1 ATTTGAGAGAA
*
25817997 ATTTTGA-AGGA
1 A-TTTGAGAGAA
25818008 ATTTGAGAGCAA
1 ATTTGAGAG-AA
25818020 A-TTGAGAGGAA
1 ATTTGAGA-GAA
25818031 ATTT-AGAAGAA
1 ATTTGAG-AGAA
25818042 A-TTGAGAGGAA
1 ATTTGAGA-GAA
25818053 ATTTGAGAGA
1 ATTTGAGAGA
25818063 TGATTAGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 8 0.15
11 30 0.55
12 17 0.31
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:25818011 original size:22 final size:22
Alignment explanation
Indices: 25817986--25818062 Score: 97
Period size: 22 Copynumber: 3.5 Consensus size: 22
25817976 ATAAATATGG
25817986 ATTTGAGAGAAATTTTGA-AGG-A
1 ATTTGAGAGAAA--TTGAGAGGAA
25818008 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAG-AAATTGAGAGGAA
25818031 ATTT-AGAAGAAATTGAGAGGAA
1 ATTTGAG-AGAAATTGAGAGGAA
25818053 ATTTGAGAGA
1 ATTTGAGAGA
25818063 TGATTAGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.08
22 34 0.68
23 12 0.24
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAGGAA
Found at i:25818025 original size:33 final size:33
Alignment explanation
Indices: 25817986--25818062 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
25817976 ATAAATATGG
* *
25817986 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGCAA
*
25818020 A-TTGAGAGGAAATTTAGAAGAAATTGAGAGGAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGCAA
25818053 ATTTGAGAGA
1 ATTTGAGAGA
25818063 TGATTAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 21 0.55
34 17 0.45
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGCAA
Found at i:25820815 original size:2 final size:2
Alignment explanation
Indices: 25820808--25820833 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25820798 CAATTAACCC
25820808 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25820834 TTCTTTAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25821714 original size:22 final size:21
Alignment explanation
Indices: 25821663--25821711 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
25821653 TTATCACTTA
25821663 TTTTTTAAAAATAATTTTAAAT
1 TTTTTTAAAAAT-ATTTTAAAT
*
25821685 TTTTTTAAAAAT-TTTATACAT
1 TTTTTTAAAAATATTT-TAAAT
25821706 TTTTTT
1 TTTTTT
25821712 TAAGGTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 10 0.40
22 12 0.48
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTTAAAAATATTTTAAAT
Found at i:25827946 original size:131 final size:131
Alignment explanation
Indices: 25827651--25827946 Score: 360
Period size: 131 Copynumber: 2.3 Consensus size: 131
25827641 ACTGATTGGA
** * * * **
25827651 AAATTAGCTAAAACAAATGAGACTGTTCATCAAATCAAATCGAATGAACTTAGGTTGCGATCTTA
1 AAATTAGCTAACTCAAATAAGACTGTTCATGATATCAAATCGAATGAACTTAGGTCACGATCTTA
* * *
25827716 AATCAGCCAACATTAACAATATCTGCTATGATATTAAACCAACGAGCTATTTGGAATAGCGATAT
66 AATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATAT
25827781 T
131 T
* * *
25827782 AAATTAGCTAACTCAAATAAGATTGTT-ACTGATATTAAATTGAATGAACTTAGGTCACGATCTT
1 AAATTAGCTAACTCAAATAAGACTGTTCA-TGATATCAAATCGAATGAACTTAGGTCACGATCTT
** * * * * * * *
25827846 AAATCAGTGAACCTTTACGATATCAGCTACGATCTTAAATCAGCGAGCTATTTGGAGTAGCAATA
65 AAATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATA
25827911 TT
130 TT
* *
25827913 AATTTAGCTAACTCAGATAAGACTGTTCATGATA
1 AAATTAGCTAACTCAAATAAGACTGTTCATGATA
25827947 AATAAAGTAA
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
130 1 0.01
131 136 0.99
132 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (131 bp):
AAATTAGCTAACTCAAATAAGACTGTTCATGATATCAAATCGAATGAACTTAGGTCACGATCTTA
AATCAGCCAACATTAACAATATCAGCTACGATATTAAACCAACGAGCTATTTGGAATAGCAATAT
T
Found at i:25835048 original size:30 final size:30
Alignment explanation
Indices: 25834991--25835048 Score: 91
Period size: 29 Copynumber: 1.9 Consensus size: 30
25834981 GACCTCTTTA
*
25834991 TTTTCTCCTAAAACTTTTACTCCCTCCCTT
1 TTTTCTCCCAAAACTTTTACTCCCTCCCTT
25835021 TTTTC-CCCAAAACTTTTACTCCTCTCCC
1 TTTTCTCCCAAAACTTTTACTCC-CTCCC
25835049 ATCCTACCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (30 bp):
TTTTCTCCCAAAACTTTTACTCCCTCCCTT
Found at i:25838142 original size:12 final size:12
Alignment explanation
Indices: 25838110--25838150 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
25838100 TGCGTAAAAT
25838110 AAAATAGTCCTA
1 AAAATAGTCCTA
*
25838122 AATAATAGTCTTA
1 AA-AATAGTCCTA
*
25838135 AAAATAGTACTA
1 AAAATAGTCCTA
25838147 AAAA
1 AAAA
25838151 AAATTCCCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (12 bp):
AAAATAGTCCTA
Found at i:25851458 original size:194 final size:194
Alignment explanation
Indices: 25851096--25851481 Score: 562
Period size: 194 Copynumber: 2.0 Consensus size: 194
25851086 CACTCCCATT
* * * *
25851096 AAAATTACAAATGACAAGCTGACGTGGTAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
1 AAAAATACAAACGACAAGATGACGTGGCAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
* * * * *
25851161 ATTTTTACATATTATATCGATTTATTCATAATTTTAAAAAATTAATCATCATAATTTACAAATGT
66 ATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAATGT
* *
25851226 TCTCAATTTGATCCTAATTCTAAAAAAATTTAAAGAAATATATAAAAATACATAAATATTTTCA
131 TCTCAATTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTTCA
* * * *
25851290 AAAAATACAAACGACAAGATGATGTGGCAGTTAAAAATATATGTATAATAATAAATTTAGCC-CT
1 AAAAATACAAACGACAAGATGACGTGGCAATTAAAAA-ATAGGTATAATAACAAATTTAGCCTC-
*
25851354 CAATTTTTAAATATCATATCGATTTAGTCATAACTTT-AAAAATTAACCCTCATAATTTACAAAT
64 CAATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAAT
* *
25851418 GTTCTCAAGTTTGATCCTAATT-TTAAAAAATTCAAAGAAATATATAAAAACACATACATATTTT
129 GTTCTCAA-TTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTT
25851482 TTTAAAAATA
Statistics
Matches: 171, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
194 103 0.60
195 68 0.40
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (194 bp):
AAAAATACAAACGACAAGATGACGTGGCAATTAAAAAATAGGTATAATAACAAATTTAGCCTCCA
ATTTTTAAATATCATATCGATTTAGTCATAACTTTAAAAAATTAACCATCATAATTTACAAATGT
TCTCAATTTGATCCTAATTCTAAAAAAATTCAAAGAAATATATAAAAACACATAAATATTTTCA
Found at i:25851570 original size:27 final size:26
Alignment explanation
Indices: 25851540--25851615 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
25851530 TACTGTTCAC
25851540 AATAAATAATAATATATAAAATTTAAA
1 AATAAATAATAATA-ATAAAATTTAAA
* * *
25851567 AATATATAAAAATAAATAAATATTTTCAA
1 AATAAATAATAAT-AATAAA-A-TTTAAA
25851596 AA-AAAT-ATAATAATAAAATT
1 AATAAATAATAATAATAAAATT
25851616 AATATTAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
24 2 0.05
25 1 0.02
26 6 0.15
27 20 0.49
28 5 0.12
29 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (26 bp):
AATAAATAATAATAATAAAATTTAAA
Found at i:25851622 original size:6 final size:6
Alignment explanation
Indices: 25851599--25851641 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
25851589 TTTTCAAAAA
* *
25851599 AATA-T AATAAT AAAATT AATATT AATATT AATATT AATATT AA
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AA
25851642 ATCAATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
5 4 0.12
6 30 0.88
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (6 bp):
AATATT
Found at i:25851634 original size:18 final size:18
Alignment explanation
Indices: 25851599--25851659 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
25851589 TTTTCAAAAA
25851599 AATA-TAATAATAAAATT
1 AATATTAATAATAAAATT
* *
25851616 AATATTAATATTAATATT
1 AATATTAATAATAAAATT
*
25851634 AATATTAAATCAATACAATT
1 AATATT-AAT-AATAAAATT
25851654 -ATATTA
1 AATATTA
25851660 CTATTAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 18 0.50
19 8 0.22
20 6 0.17
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATTAATAATAAAATT
Found at i:25858131 original size:38 final size:39
Alignment explanation
Indices: 25858080--25858192 Score: 156
Period size: 38 Copynumber: 2.9 Consensus size: 39
25858070 CGTAACGTTA
25858080 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG-AT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
*
25858118 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGTCGGTGAAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
* * * * * *
25858157 ATTTGGGCTCTATGCCTAGTAGGCTTTATGCTGGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
25858193 TAATTGTATC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
38 35 0.53
39 31 0.47
ACGTcount: A:0.12, C:0.19, G:0.33, T:0.36
Consensus pattern (39 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAT
Found at i:25862668 original size:21 final size:21
Alignment explanation
Indices: 25862644--25862694 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
25862634 TTCTAAGTAT
25862644 AAATTCTATTTTTGTGAAACA
1 AAATTCTATTTTTGTGAAACA
25862665 AAATTCTATTTTTGTGAAACA
1 AAATTCTATTTTTGTGAAACA
*
25862686 CAATTCTAT
1 AAATTCTAT
25862695 CAGTTTCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (21 bp):
AAATTCTATTTTTGTGAAACA
Found at i:25865190 original size:5 final size:5
Alignment explanation
Indices: 25865180--25865211 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
25865170 AAGGATATTT
25865180 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TT
25865212 TAAGGATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:25865662 original size:29 final size:29
Alignment explanation
Indices: 25865621--25865695 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
25865611 ATAAAAATCA
*
25865621 ATAAAATTATAAAAATATTTAAATTTTAT
1 ATAAAATTATAAAAATATTTAAATTATAT
* **
25865650 TTAAAATTATAAATTTATTTAAATTATAT
1 ATAAAATTATAAAAATATTTAAATTATAT
*
25865679 AGAAAATTATATAAAAT
1 ATAAAATTATA-AAAAT
25865696 TTATTATAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
29 34 0.92
30 3 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (29 bp):
ATAAAATTATAAAAATATTTAAATTATAT
Found at i:25865679 original size:19 final size:19
Alignment explanation
Indices: 25865640--25865677 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
25865630 TAAAAATATT
25865640 TAAATTTTATTTAAAATTA
1 TAAATTTTATTTAAAATTA
25865659 TAAA-TTTATTT-AAATTA
1 TAAATTTTATTTAAAATTA
25865676 TA
1 TA
25865678 TAGAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TAAATTTTATTTAAAATTA
Found at i:25865706 original size:22 final size:20
Alignment explanation
Indices: 25865621--25865707 Score: 56
Period size: 18 Copynumber: 4.3 Consensus size: 20
25865611 ATAAAAATCA
*
25865621 ATAAAATTA-TAAAAATATT
1 ATAAAATTATTAAAATTATT
* *
25865640 -TAAATTTTATTTAAA--ATT
1 ATAAA-ATTATTAAAATTATT
* *
25865658 ATAAATTTATTTAAATTATAT
1 ATAAAATTATTAAAATTAT-T
*
25865679 AGAAAATTATATAAAATTTATT
1 ATAAAATTAT-TAAAA-TTATT
25865701 ATAAAAT
1 ATAAAAT
25865708 ATAAATATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
18 17 0.31
19 7 0.13
20 6 0.11
21 9 0.17
22 11 0.20
23 4 0.07
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
ATAAAATTATTAAAATTATT
Found at i:25866272 original size:21 final size:21
Alignment explanation
Indices: 25866235--25866278 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25866225 TCTGTACTTT
* *
25866235 TATATTTTATAACAATTTTTA
1 TATATTTTATAAAAATTTATA
25866256 TATATTTT-TAATAAATTTATA
1 TATATTTTATAA-AAATTTATA
25866277 TA
1 TA
25866279 AGTTCTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TATATTTTATAAAAATTTATA
Found at i:25868734 original size:20 final size:20
Alignment explanation
Indices: 25868698--25868735 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25868688 AAAAGGCCCT
**
25868698 TTGACCGTTAACTTTAACAG
1 TTGACCGTTAAAGTTAACAG
25868718 TTGACCGTTAAAGTTAAC
1 TTGACCGTTAAAGTTAAC
25868736 TGCCCCTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (20 bp):
TTGACCGTTAAAGTTAACAG
Found at i:25868894 original size:21 final size:20
Alignment explanation
Indices: 25868870--25868916 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
25868860 TAAAAATATA
25868870 AAAAATTAGGAAAATATTAAT
1 AAAAATTAGGAAAAT-TTAAT
* * *
25868891 AAAAATTTGTAAAATTTTAT
1 AAAAATTAGGAAAATTTAAT
25868911 AAAAAT
1 AAAAAT
25868917 CATAATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (20 bp):
AAAAATTAGGAAAATTTAAT
Found at i:25881223 original size:19 final size:18
Alignment explanation
Indices: 25881195--25881302 Score: 60
Period size: 19 Copynumber: 5.7 Consensus size: 18
25881185 TTTTTATGAA
25881195 TTTTAT-ATTTCTTTACAT
1 TTTTATAATTT-TTTACAT
25881213 TTTTATAATTTTCTTACGACT
1 TTTTATAATTTT-TTAC-A-T
* * *
25881234 TTATAAAATTTTATTA-TT
1 TTTTATAATTTT-TTACAT
* * *
25881252 TTTTCT-ATATTTCTATAT
1 TTTTATAAT-TTTTTACAT
*
25881270 ATTTTATTATTTTTTACGAT
1 -TTTTATAATTTTTTAC-AT
25881290 TTTTATAATTTTT
1 TTTTATAATTTTT
25881303 CTAATTTAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 17
0.69 0.13 0.17
Matches are distributed among these distances:
17 4 0.06
18 15 0.22
19 30 0.44
20 5 0.07
21 14 0.21
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTTTACAT
Found at i:25881300 original size:9 final size:9
Alignment explanation
Indices: 25881288--25881369 Score: 51
Period size: 9 Copynumber: 8.9 Consensus size: 9
25881278 ATTTTTTACG
25881288 ATTTTTATA
1 ATTTTTATA
*
25881297 ATTTTTCTA
1 ATTTTTATA
**
25881306 ATTTAAATA
1 ATTTTTATA
25881315 TATTTTTAT-
1 -ATTTTTATA
25881324 -TTTTTATTAA
1 ATTTTTA-T-A
* *
25881334 AATTTAATA
1 ATTTTTATA
25881343 ATTTTTATA
1 ATTTTTATA
* *
25881352 AATTTTATTG
1 ATTTTTA-TA
25881362 ATTTTTAT
1 ATTTTTAT
25881370 TTTTTAATCA
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
7 6 0.11
8 1 0.02
9 29 0.54
10 14 0.26
11 4 0.07
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:25881319 original size:28 final size:26
Alignment explanation
Indices: 25881288--25881358 Score: 70
Period size: 28 Copynumber: 2.6 Consensus size: 26
25881278 ATTTTTTACG
**
25881288 ATTTTTATAATTTTTCTAATTTAAATA
1 ATTTTTATAATTTTTAAAATTT-AATA
**
25881315 TATTTTTATTTTTTATTAAAATTTAATA
1 -ATTTTTATAATTT-TTAAAATTTAATA
*
25881343 ATTTTTATAAATTTTA
1 ATTTTTATAATTTTTA
25881359 TTGATTTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
26 3 0.09
27 10 0.29
28 15 0.43
29 7 0.20
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTTTATAATTTTTAAAATTTAATA
Found at i:25881344 original size:46 final size:45
Alignment explanation
Indices: 25881233--25881375 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
25881223 TTCTTACGAC
* *
25881233 TTTA-TAAAATTTTATTATTTTTTCTATATTTCTATATA-TTTTATTAT
1 TTTATTAAAA-TTTAATAATTTTTCTA-ATTT-TATATATTTTTATT-T
* * * *
25881280 TTT-TTACGATTTTTATAATTTTTCTAATTTAAATATATTTTTATTT
1 TTTATTA-AAATTTAATAATTTTTCTAATTT-TATATATTTTTATTT
*
25881326 TTTATTAAAATTTAATAATTTTTATAAATTTTAT-TGATTTTTATTT
1 TTTATTAAAATTTAATAATTTTTCT-AATTTTATAT-ATTTTTATTT
25881372 TTTA
1 TTTA
25881376 ATCATTTTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 13
0.76 0.12 0.13
Matches are distributed among these distances:
45 1 0.01
46 43 0.55
47 33 0.42
48 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (45 bp):
TTTATTAAAATTTAATAATTTTTCTAATTTTATATATTTTTATTT
Found at i:25881353 original size:19 final size:19
Alignment explanation
Indices: 25881324--25881369 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25881314 ATATTTTTAT
25881324 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAAAATTTAATAA
* * *
25881344 TTTTTATAAATTTTATTGA
1 TTTTTATAAAATTTAATAA
25881363 TTTTTAT
1 TTTTTAT
25881370 TTTTTAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATAAAATTTAATAA
Found at i:25881368 original size:29 final size:29
Alignment explanation
Indices: 25881233--25881368 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 29
25881223 TTCTTACGAC
**
25881233 TTTATAAAATTTTATTATTTTTTCTATATT
1 TTTAT-AAATTTTATTATTTTTAATATATT
* * *
25881263 TCTATATATTTTATTATTTTT--TACGATT
1 TTTATAAATTTTATTATTTTTAATA-TATT
* *
25881291 TTTAT-AATTTT-TCTAATTTAAATATATT
1 TTTATAAATTTTAT-TATTTTTAATATATT
* **
25881319 TTTAT--TTTTTATTAAAATTTAATA-ATT
1 TTTATAAATTTTATT-ATTTTTAATATATT
25881346 TTTATAAATTTTATTGATTTTTA
1 TTTATAAATTTTATT-ATTTTTA
25881369 TTTTTTAATC
Statistics
Matches: 83, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
26 1 0.01
27 25 0.30
28 24 0.29
29 29 0.35
30 4 0.05
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTATAAATTTTATTATTTTTAATATATT
Found at i:25881626 original size:89 final size:90
Alignment explanation
Indices: 25881486--25881672 Score: 254
Period size: 89 Copynumber: 2.1 Consensus size: 90
25881476 CAGTCAAAGA
* * * *
25881486 GCCTTTTTATTGCATTTCGAAAGTTCAAGTATCCAATTAAGTGCAAAAAAAATTAGGGGCTTAAT
1 GCCTTTTTATTGCATTTCGAAAGTTCAAGTACCCAATTAAGTGCAAAAAAAAGTAGGAGCTTAAA
* **
25881551 TGC-TGTTTTTGAAAAAGTTTGAAG
66 TGCTTATTTTTGAAAAAAATTGAAG
* * *
25881575 GCCTTTTTGA-TGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAGTATGAGCTTAA
1 GCCTTTTT-ATTGCATTTCGAAAGTTCAAGTACCCAATTAAGTGCAAAAAAAAGTAGGAGCTTAA
25881639 ATGCTTATTTTTGAAAAAAATTGAAG
65 ATGCTTATTTTTGAAAAAAATTGAAG
25881665 G-CTTTTTA
1 GCCTTTTTA
25881673 CACCTTTAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
88 1 0.01
89 65 0.76
90 20 0.23
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (90 bp):
GCCTTTTTATTGCATTTCGAAAGTTCAAGTACCCAATTAAGTGCAAAAAAAAGTAGGAGCTTAAA
TGCTTATTTTTGAAAAAAATTGAAG
Found at i:25885434 original size:136 final size:136
Alignment explanation
Indices: 25885204--25885647 Score: 640
Period size: 136 Copynumber: 3.3 Consensus size: 136
25885194 AGTGTAGATC
* *
25885204 GTGAGAGAGAG-T--TACTTGGGTATTTATACCTAGCCTTGGGGCATCAATGCTCCAGAGTGCTA
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
*
25885266 TCGGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
25885331 AGAAGT
131 AGAAGT
25885337 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
25885402 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
25885467 AGAAGT
131 AGAAGT
* * * * *
25885473 GTGAGAGGGATTTGGTACTTGGATATTTATACCTAGCCTTCGGGCATCAGTGCTCCAGAATGCTC
1 GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
* * * * *
25885538 TTTGATGCTTAAGTTAGAAAACGAGATAGTGTAATGGGT-----AA-AGC--AAGCTAGCAGAGA
66 TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
*
25885595 GGAAGT
131 AGAAGT
* * *
25885601 AAGAGAGAGGGAGTTGGTACTTGGGTATTTATACCTAGCCTTGGGGC
1 --GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGC
25885648 TGCCTGTTGC
Statistics
Matches: 288, Mismatches: 18, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
128 18 0.06
130 44 0.15
131 2 0.01
133 11 0.04
134 1 0.00
136 212 0.74
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.27
Consensus pattern (136 bp):
GTGAGAGAGAGTTGGTACTTGGATATTTATACCTAGCCTTGGGGCATCAGTGCTCCAGAGTGCTA
TCTGATGCTTAAGTTAGCAAAGGAGATTGTGTAATGGATAAAAAAAGAGCTTAAGCTAGCAGAGA
AGAAGT
Found at i:25900825 original size:44 final size:43
Alignment explanation
Indices: 25900759--25900964 Score: 205
Period size: 44 Copynumber: 4.7 Consensus size: 43
25900749 TCATTAGGGC
** *
25900759 TTATATTCAATGGGTACCATGTATTGGTGTTGGCTATGTGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTAT-TGCCAT
* *
25900803 TTATATTCAGCAGGTACTATGTATCGGTGTTGGCTAATTGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCT-ATTGCCAT
* * * * **
25900847 TTGTATTCAGCAGGTACCATGTATTGATGTTGGCTATGTGTAAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTAT-TGCCAT
* * * *
25900891 TTATATTCAACAGGTACTATGTACTAGTATTGGTTATTACGCCAT
1 TTATATTCAACAGGTACTATGTATTGGTGTTGGCTATT--GCCAT
* * *
25900936 TTTTATACAACAGGTACTTTGTATTGGTG
1 TTATATTCAACAGGTACTATGTATTGGTG
25900965 ATGGATACCT
Statistics
Matches: 131, Mismatches: 27, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
43 3 0.02
44 100 0.76
45 28 0.21
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.41
Consensus pattern (43 bp):
TTATATTCAACAGGTACTATGTATTGGTGTTGGCTATTGCCAT
Found at i:25903498 original size:21 final size:21
Alignment explanation
Indices: 25903472--25903542 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
25903462 AAAACTACTA
25903472 TGAATGTTGCAACATTGGAAT
1 TGAATGTTGCAACATTGGAAT
** * * *
25903493 TGAATGTCACGACATTGGGAC
1 TGAATGTTGCAACATTGGAAT
25903514 TGAATGTTGCAACATTGGAAT
1 TGAATGTTGCAACATTGGAAT
25903535 CTGAATGT
1 -TGAATGT
25903543 CGTGACATTG
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 32 0.82
22 7 0.18
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (21 bp):
TGAATGTTGCAACATTGGAAT
Found at i:25903531 original size:42 final size:43
Alignment explanation
Indices: 25903472--25903552 Score: 137
Period size: 42 Copynumber: 1.9 Consensus size: 43
25903462 AAAACTACTA
25903472 TGAATGTTGCAACATTGGAAT-TGAATGTCACGACATTGGGAC
1 TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTGGGAC
**
25903514 TGAATGTTGCAACATTGGAATCTGAATGTCGTGACATTG
1 TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTG
25903553 AATATAGACG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 21 0.58
43 15 0.42
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (43 bp):
TGAATGTTGCAACATTGGAATCTGAATGTCACGACATTGGGAC
Found at i:25903550 original size:22 final size:22
Alignment explanation
Indices: 25903472--25903552 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 22
25903462 AAAACTACTA
* *
25903472 TGAATGTTGCAACATTGGAAT-
1 TGAATGTCGCGACATTGGAATC
* *
25903493 TGAATGTCACGACATTGGGA-C
1 TGAATGTCGCGACATTGGAATC
* *
25903514 TGAATGTTGCAACATTGGAATC
1 TGAATGTCGCGACATTGGAATC
*
25903536 TGAATGTCGTGACATTG
1 TGAATGTCGCGACATTG
25903553 AATATAGACG
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 32 0.68
22 15 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (22 bp):
TGAATGTCGCGACATTGGAATC
Found at i:25909912 original size:24 final size:25
Alignment explanation
Indices: 25909885--25909983 Score: 102
Period size: 25 Copynumber: 4.2 Consensus size: 25
25909875 TTTGGACTAA
25909885 ATTGAATAGTATGTTT-TTAAATAG
1 ATTGAATAGTATGTTTATTAAATAG
25909909 ATTGAATAGTATGTTTATTAAATAG
1 ATTGAATAGTATGTTTATTAAATAG
* ** * *
25909934 ATTG-AT-G-A-ATTT-TGGACTAA
1 ATTGAATAGTATGTTTATTAAATAG
*
25909954 ATTGAATAGTATGTGTATTAAATAG
1 ATTGAATAGTATGTTTATTAAATAG
25909979 ATTGA
1 ATTGA
25909984 GTTTGCTTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
20 8 0.14
21 5 0.09
22 2 0.03
23 2 0.03
24 20 0.34
25 21 0.36
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.42
Consensus pattern (25 bp):
ATTGAATAGTATGTTTATTAAATAG
Found at i:25909935 original size:25 final size:24
Alignment explanation
Indices: 25909885--25909938 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
25909875 TTTGGACTAA
25909885 ATTGAATAGTATGTTTTTAAATAG
1 ATTGAATAGTATGTTTTTAAATAG
25909909 ATTGAATAGTATGTTTATTAAATAG
1 ATTGAATAGTATGTTT-TTAAATAG
25909934 ATTGA
1 ATTGA
25909939 TGAATTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (24 bp):
ATTGAATAGTATGTTTTTAAATAG
Found at i:25915309 original size:21 final size:19
Alignment explanation
Indices: 25915255--25915311 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
25915245 CTGTGACAGG
*
25915255 GGTACACGGCCGTGTGGCT
1 GGTACACGACCGTGTGGCT
* * *
25915274 GGAAGACGCCCGTGTGGCT
1 GGTACACGACCGTGTGGCT
25915293 GAGGTACACGACCGTGTGG
1 --GGTACACGACCGTGTGG
25915312 GTAGACCATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 16 0.53
21 14 0.47
ACGTcount: A:0.16, C:0.25, G:0.42, T:0.18
Consensus pattern (19 bp):
GGTACACGACCGTGTGGCT
Found at i:25916953 original size:12 final size:12
Alignment explanation
Indices: 25916936--25916960 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25916926 ATTTTATAAC
25916936 ATAAATATTGTT
1 ATAAATATTGTT
25916948 ATAAATATTGTT
1 ATAAATATTGTT
25916960 A
1 A
25916961 ATAGCCTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:25919407 original size:22 final size:21
Alignment explanation
Indices: 25919378--25919446 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
25919368 CTCACAAAGA
* * *
25919378 AAAAAGA-AAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
25919398 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
25919419 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
25919440 AAAAAGA
1 AAAAAGA
25919447 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 7 0.16
21 36 0.84
ACGTcount: A:0.57, C:0.09, G:0.23, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:25929095 original size:17 final size:17
Alignment explanation
Indices: 25929075--25929108 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25929065 TTCATTTATT
*
25929075 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
25929092 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
25929109 GCGAGTCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:25929727 original size:27 final size:27
Alignment explanation
Indices: 25929692--25929746 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
25929682 ATAAACTAAC
*
25929692 TACCTTTTCACTACAAATAAAAAAATT
1 TACCATTTCACTACAAATAAAAAAATT
25929719 TACCATTTCACTACAAATAAAAAAATT
1 TACCATTTCACTACAAATAAAAAAATT
25929746 T
1 T
25929747 CACTTAAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (27 bp):
TACCATTTCACTACAAATAAAAAAATT
Found at i:25933647 original size:19 final size:19
Alignment explanation
Indices: 25933625--25933673 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
25933615 TGCAAATGAA
*
25933625 ATAAATAAAATAGAAATAG
1 ATAAATAAAATAAAAATAG
*
25933644 ATAAATAATATAAAAATA-
1 ATAAATAAAATAAAAATAG
*
25933662 ATATA-AAAATAA
1 ATAAATAAAATAA
25933674 TATTATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 6 0.23
18 4 0.15
19 16 0.62
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (19 bp):
ATAAATAAAATAAAAATAG
Found at i:25933653 original size:11 final size:11
Alignment explanation
Indices: 25933646--25933676 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
25933636 AGAAATAGAT
25933646 AAATAATATAA
1 AAATAATATAA
25933657 AAATAATATAA
1 AAATAATATAA
25933668 AAATAATAT
1 AAATAATAT
25933677 TATAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAATAATATAA
Found at i:25933672 original size:30 final size:30
Alignment explanation
Indices: 25933627--25933699 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 30
25933617 CAAATGAAAT
*
25933627 AAATAAAATAGAAATAGATA-AATAATATAA
1 AAATAAAATAAAAATA-ATATAATAATATAA
* *
25933657 AAATAATATAAAAATAATATTATAATATATTA
1 AAATAAAATAAAAATAATATAATAATATA--A
25933689 TAAATAAAATA
1 -AAATAAAATA
25933700 TATTAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 3 0.09
30 22 0.63
32 1 0.03
33 9 0.26
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (30 bp):
AAATAAAATAAAAATAATATAATAATATAA
Found at i:25933683 original size:11 final size:11
Alignment explanation
Indices: 25933647--25933738 Score: 50
Period size: 11 Copynumber: 8.4 Consensus size: 11
25933637 GAAATAGATA
* *
25933647 AATAATATAAA
1 AATAATATTAT
* *
25933658 AATAATATAAA
1 AATAATATTAT
25933669 AATAATATTAT
1 AATAATATTAT
25933680 AAT-ATATTAT
1 AATAATATTAT
*
25933690 AAATAAAATATATT
1 -AATAATAT-TA-T
25933704 AATAA-ATTAAT
1 AATAATATT-AT
25933715 AA-AATA-TAT
1 AATAATATTAT
*
25933724 AAATAA-ATTCT
1 -AATAATATTAT
25933735 AATA
1 AATA
25933739 CTAATATATA
Statistics
Matches: 68, Mismatches: 4, Indels: 19
0.75 0.04 0.21
Matches are distributed among these distances:
9 2 0.03
10 17 0.25
11 35 0.51
12 6 0.09
13 7 0.10
14 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAATATTAT
Found at i:25933691 original size:35 final size:33
Alignment explanation
Indices: 25933644--25933730 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 33
25933634 ATAGAAATAG
25933644 ATAAATAATATAAA-AATAATATAAAAATAATATT-
1 ATAAAT-ATATAAATAA-AATATAAAAATAA-ATTA
**
25933678 ATAATATATTATAAATAAAATATATTAATAAATTA
1 ATAA-ATA-TATAAATAAAATATAAAAATAAATTA
25933713 ATAAAATATATAAATAAA
1 AT-AAATATATAAATAAA
25933731 TTCTAATACT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
34 18 0.39
35 24 0.52
36 4 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (33 bp):
ATAAATATATAAATAAAATATAAAAATAAATTA
Found at i:25933699 original size:24 final size:24
Alignment explanation
Indices: 25933646--25933747 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 24
25933636 AGAAATAGAT
**
25933646 AAATAATATAAAAAT-AA-TATAA
1 AAATAATATATTAATAAATTATAA
*
25933668 AAATAATAT-TATAATATATTATAA
1 AAATAATATAT-TAATAAATTATAA
25933692 ATAA-AATATATTAATAAATTA-ATA
1 A-AATAATATATTAATAAATTATA-A
*
25933716 AAAT-ATATA--AATAAATTCTAA
1 AAATAATATATTAATAAATTATAA
* *
25933737 TACTAATATAT
1 AAATAATATAT
25933748 ATTAGAATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
21 11 0.17
22 18 0.29
23 9 0.14
24 22 0.35
25 3 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAATAATATATTAATAAATTATAA
Found at i:25933701 original size:16 final size:16
Alignment explanation
Indices: 25933680--25933730 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
25933670 ATAATATTAT
25933680 AATATATTATAAATAA
1 AATATATTATAAATAA
25933696 AATATATTAATAAATTAA
1 AATATATT-ATAAA-TAA
*
25933714 TAAAATA-TATAAATAA
1 -AATATATTATAAATAA
25933730 A
1 A
25933731 TTCTAATACT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 1 0.03
16 11 0.35
17 10 0.32
18 4 0.13
19 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATATTATAAATAA
Found at i:25933715 original size:21 final size:21
Alignment explanation
Indices: 25933691--25933732 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
25933681 ATATATTATA
*
25933691 AATAAAATATATTAATAAATT
1 AATAAAATATATAAATAAATT
25933712 AATAAAATATATAAATAAATT
1 AATAAAATATATAAATAAATT
25933733 CTAATACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AATAAAATATATAAATAAATT
Found at i:25933778 original size:58 final size:56
Alignment explanation
Indices: 25933661--25933783 Score: 135
Period size: 56 Copynumber: 2.2 Consensus size: 56
25933651 ATATAAAAAT
* *
25933661 AATATAAAAATAATATTATAATATATTATAAATAAAATATATTAATAAATTAATAA
1 AATATATAAATAATATTATAATATAATATAAATAAAATATATTAATAAATTAATAA
* * *
25933717 AATATATAAATAA-ATTCTAATACTAATATATATTAGAATATATATAATAGAA-TAGAT-A
1 AATATATAAATAATATTATAATA-TAATATA-AATAAAATATAT-TAATA-AATTA-ATAA
25933775 AATATATAA
1 AATATATAA
25933784 TAGAATTAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
55 8 0.14
56 18 0.32
57 10 0.18
58 17 0.30
59 4 0.07
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (56 bp):
AATATATAAATAATATTATAATATAATATAAATAAAATATATTAATAAATTAATAA
Found at i:25936478 original size:19 final size:19
Alignment explanation
Indices: 25936456--25936514 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
25936446 TTGCCAAAAT
25936456 TTTTTTGCTGATTCTACTA
1 TTTTTTGCTGATTCTACTA
* * * * *
25936475 TTTTATCCTGA-T-AATTT
1 TTTTTTGCTGATTCTACTA
*
25936492 TTTTTTGCTAATTCTACTA
1 TTTTTTGCTGATTCTACTA
25936511 TTTT
1 TTTT
25936515 ATCCTAATAA
Statistics
Matches: 27, Mismatches: 11, Indels: 4
0.64 0.26 0.10
Matches are distributed among these distances:
17 10 0.37
18 2 0.07
19 15 0.56
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.61
Consensus pattern (19 bp):
TTTTTTGCTGATTCTACTA
Found at i:25936500 original size:36 final size:36
Alignment explanation
Indices: 25936455--25936524 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
25936445 TTTGCCAAAA
* *
25936455 TTTTTTTGCTGATTCTACTATTTTATCCTGATAATT
1 TTTTTTTGCTAATTCTACTATTTTATCCTAATAATT
25936491 TTTTTTTGCTAATTCTACTATTTTATCCTAATAA
1 TTTTTTTGCTAATTCTACTATTTTATCCTAATAA
25936525 CTTATTTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.57
Consensus pattern (36 bp):
TTTTTTTGCTAATTCTACTATTTTATCCTAATAATT
Found at i:25936544 original size:35 final size:36
Alignment explanation
Indices: 25936458--25936548 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 36
25936448 GCCAAAATTT
* * * * *
25936458 TTTTGCTGATTCTACTATTTTATCCTGATAATTTTT
1 TTTTGCTAATACTACTATTTTATCCTAATAATCTTA
*
25936494 TTTTGCTAATTCTACTATTTTATCCTAATAA-CTTA
1 TTTTGCTAATACTACTATTTTATCCTAATAATCTTA
*
25936529 TTTTGTTAGA-ACTACTATTT
1 TTTTGCTA-ATACTACTATTT
25936549 ATTTCTTGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
35 18 0.38
36 30 0.62
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (36 bp):
TTTTGCTAATACTACTATTTTATCCTAATAATCTTA
Found at i:25943778 original size:14 final size:13
Alignment explanation
Indices: 25943761--25943791 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
25943751 GATGGATTCG
25943761 TATAATTCTTATCA
1 TATAATTCTTAT-A
25943775 TATAATTCTTATA
1 TATAATTCTTATA
25943788 TATA
1 TATA
25943792 TTGTACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (13 bp):
TATAATTCTTATA
Found at i:25955290 original size:40 final size:40
Alignment explanation
Indices: 25955246--25955510 Score: 358
Period size: 40 Copynumber: 6.7 Consensus size: 40
25955236 GCTCCTCGTT
*
25955246 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
25955286 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
25955326 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
25955366 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
25955406 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
25955445 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25955486 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25955511 CATCATTCAA
Statistics
Matches: 203, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.15
40 157 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25955501 original size:119 final size:121
Alignment explanation
Indices: 25955246--25955510 Score: 360
Period size: 119 Copynumber: 2.2 Consensus size: 121
25955236 GCTCCTCGTT
*
25955246 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
25955310 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* * *
25955366 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
25955429 GAATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
25955486 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25955511 CATCATTCAA
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
118 3 0.02
119 67 0.52
120 56 0.44
121 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:25964094 original size:23 final size:25
Alignment explanation
Indices: 25964043--25964094 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
25964033 TCAAATTTTC
* * *
25964043 AAAATATTTATAAATTTTATTTTCT
1 AAAATATTTATAAATTATATATTCA
25964068 AAAAT-TTTATAAA-TATATATTCA
1 AAAATATTTATAAATTATATATTCA
25964091 AAAA
1 AAAA
25964095 ATTAAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
24 8 0.33
25 5 0.21
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (25 bp):
AAAATATTTATAAATTATATATTCA
Found at i:25971709 original size:5 final size:5
Alignment explanation
Indices: 25971699--25971730 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
25971689 TGAGCATTCG
25971699 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
25971731 AAAAAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:25972248 original size:19 final size:19
Alignment explanation
Indices: 25972215--25972262 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
25972205 TAAACATTTC
25972215 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
25972232 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
25972251 AATAATATAAAT
1 AATAATATAAAT
25972263 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:25972454 original size:30 final size:31
Alignment explanation
Indices: 25972389--25972459 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
25972379 TTTTGGGGAA
* ** *
25972389 TAAAAGTTTGAGGGAAAGTAAATAGGGGTAG
1 TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
25972420 TAAAATTTTGAGAAAAAGTAAATAGGAG-AG
1 TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
25972450 TAAAATTTTG
1 TAAAATTTTG
25972460 GTGGGAAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 12 0.33
31 24 0.67
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (31 bp):
TAAAATTTTGAGAAAAAGTAAATAGGAGTAG
Found at i:25972583 original size:29 final size:29
Alignment explanation
Indices: 25972504--25972575 Score: 144
Period size: 29 Copynumber: 2.5 Consensus size: 29
25972494 GTAGTGGAGG
25972504 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
1 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
25972533 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
1 GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
25972562 GGAGTAAAAGTTTT
1 GGAGTAAAAGTTTT
25972576 TAGGGAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.24
Consensus pattern (29 bp):
GGAGTAAAAGTTTTGGGGGAAAGTGGGAA
Found at i:25972649 original size:9 final size:9
Alignment explanation
Indices: 25972635--25972671 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
25972625 TATAGTTTGA
25972635 TATTCGAAT
1 TATTCGAAT
25972644 TATTCGAAT
1 TATTCGAAT
* *
25972653 TATTTGAGT
1 TATTCGAAT
25972662 TATTCGAAT
1 TATTCGAAT
25972671 T
1 T
25972672 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:25972740 original size:9 final size:9
Alignment explanation
Indices: 25972723--25972753 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25972713 TTGAGTTGAT
25972723 TCGAATAAC
1 TCGAATAAC
*
25972732 TCGATTAAC
1 TCGAATAAC
25972741 TCGAATAAC
1 TCGAATAAC
25972750 TCGA
1 TCGA
25972754 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:25974702 original size:25 final size:25
Alignment explanation
Indices: 25974673--25974744 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 25
25974663 TCCCGTTATA
25974673 TGGCTCTTCGTGAGCTTCC-CAAAT
1 TGGCTCTTCGTGAGCTTCCTCAAAT
*
25974697 TAGGCTCTTCGTGAGCTTCCTGTTAAAT
1 T-GGCTCTTCGTGAGCTTCC--TCAAAT
*
25974725 TGGCTCTTTGTGAGCTTCCT
1 TGGCTCTTCGTGAGCTTCCT
25974745 GATAGTGCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 1 0.02
25 19 0.45
27 17 0.40
28 5 0.12
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.39
Consensus pattern (25 bp):
TGGCTCTTCGTGAGCTTCCTCAAAT
Found at i:25974737 original size:27 final size:26
Alignment explanation
Indices: 25974673--25974745 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
25974663 TCCCGTTATA
25974673 TGGCTCTTCGTGAGCTTCC--CAAAT
1 TGGCTCTTCGTGAGCTTCCTGCAAAT
*
25974697 TAGGCTCTTCGTGAGCTTCCTGTTAAAT
1 T-GGCTCTTCGTGAGCTTCCTG-CAAAT
*
25974725 TGGCTCTTTGTGAGCTTCCTG
1 TGGCTCTTCGTGAGCTTCCTG
25974746 ATAGTGCTCG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
27 19 0.44
28 5 0.12
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (26 bp):
TGGCTCTTCGTGAGCTTCCTGCAAAT
Found at i:25978210 original size:11 final size:11
Alignment explanation
Indices: 25978194--25978219 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25978184 AAACGATAAA
25978194 TGATTTGTAAT
1 TGATTTGTAAT
25978205 TGATTTGTAAT
1 TGATTTGTAAT
25978216 TGAT
1 TGAT
25978220 AAATGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATTTGTAAT
Found at i:25984120 original size:49 final size:49
Alignment explanation
Indices: 25984054--25984239 Score: 160
Period size: 50 Copynumber: 3.8 Consensus size: 49
25984044 GATAATAACA
* * * *
25984054 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC-
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGA-GTTCTCATAT-CG
* *
25984103 TGCCAATGTCATATCCCAGATATGGTCTTACAAGGGAGTTCTCATATCGG
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGAGTTCTCATATC-G
* ** ** *
25984153 TGCCCATGTCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGAGTTCTCATATC-G
** * * * *
25984203 CACCAACGCCATGTCCCAGAAATGGTCTTACATGGGA
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGA
25984240 TCTCATCCCC
Statistics
Matches: 111, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
48 4 0.04
49 37 0.33
50 70 0.63
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (49 bp):
TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGAGTTCTCATATCG
Found at i:25984171 original size:50 final size:49
Alignment explanation
Indices: 25984054--25984183 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 49
25984044 GATAATAACA
* * * *
25984054 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTAC
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGATGTTTCATATAC
* *
25984103 TGCCAATGTCATATCCCAGATATGGTCTTACAAGGGA-GTTCTCATAT-C
1 TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGATGTT-TCATATAC
*
25984151 GGTGCCCATGTCATGTCCCAGACATGGTCTTAC
1 --TGCCAATGTCATGTCCCAGACATGGTCTTAC
25984184 GGGGGACCTC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 4 0.06
49 37 0.54
50 28 0.41
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (49 bp):
TGCCAATGTCATGTCCCAGACATGGTCTTACAAGGGATGTTTCATATAC
Found at i:25992216 original size:15 final size:17
Alignment explanation
Indices: 25992196--25992228 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
25992186 GTTCCTCAAC
25992196 TTTGGT-TTTTA-CCAA
1 TTTGGTCTTTTATCCAA
25992211 TTTGGTCTTTTATCCAA
1 TTTGGTCTTTTATCCAA
25992228 T
1 T
25992229 AAGCACCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (17 bp):
TTTGGTCTTTTATCCAA
Found at i:25996581 original size:119 final size:120
Alignment explanation
Indices: 25996405--25996620 Score: 289
Period size: 119 Copynumber: 1.8 Consensus size: 120
25996395 TACTCGTTCA
* *
25996405 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGAACAAATGCCTTCGGGACTTAG-CCCGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGAACAAATGCCTTCGGGACTTAGTCCCGA-
* *
25996469 TATAGTTAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
65 TATAGTCACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * *
25996525 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGAACAAATGCCTTCGGGA-CTTAGTCCCG
*
25996587 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTA
25996621 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
118 4 0.05
119 56 0.67
120 24 0.29
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGAACAAATGCCTTCGGGACTTAGTCCCGAT
ATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:25996627 original size:40 final size:40
Alignment explanation
Indices: 25996384--25996627 Score: 266
Period size: 40 Copynumber: 6.1 Consensus size: 40
25996374 CGGAATTTAA
** *
25996384 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25996424 CCGGTTATAGTGACTCGAACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25996464 CC-GATTATAGTTACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25996504 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
25996543 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
25996583 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
25996623 CCGGA
1 CCGGA
25996628 CATCATTCAA
Statistics
Matches: 175, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 126 0.72
41 14 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25998796 original size:16 final size:17
Alignment explanation
Indices: 25998775--25998807 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25998765 AAAATACATT
*
25998775 AAATAAAGCTT-TTAAA
1 AAATAAACCTTATTAAA
25998791 AAATAAACCTTATTAAA
1 AAATAAACCTTATTAAA
25998808 TACGAAACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AAATAAACCTTATTAAA
Found at i:25999005 original size:6 final size:6
Alignment explanation
Indices: 25998994--25999019 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
25998984 ATTTTGGTAA
25998994 CAGTTT CAGTTT CAGTTT CAGTTT CA
1 CAGTTT CAGTTT CAGTTT CAGTTT CA
25999020 ATTAGGGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
CAGTTT
Found at i:26008721 original size:23 final size:23
Alignment explanation
Indices: 26008673--26008722 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
26008663 TAAAGTAGGT
* *
26008673 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
*
26008696 TATATTATGATTTTTTTAAT-TCA
1 TATA-TATGATTTTTATAATATCA
26008719 TATA
1 TATA
26008723 ATAATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:26018904 original size:14 final size:17
Alignment explanation
Indices: 26018881--26018916 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
26018871 AAGACTTATT
26018881 TTTTTCTCAAG-CTA-A
1 TTTTTCTCAAGCCTATA
26018896 TTTTT-TCAAGCCTATA
1 TTTTTCTCAAGCCTATA
26018912 TTTTT
1 TTTTT
26018917 GCCCAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.26
15 8 0.42
16 6 0.32
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTTCTCAAGCCTATA
Found at i:26019792 original size:7 final size:8
Alignment explanation
Indices: 26019773--26019807 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
26019763 TGTTTTGTAA
26019773 AAAAAATT
1 AAAAAATT
26019781 AAAAAATT
1 AAAAAATT
26019789 AAAAAATT
1 AAAAAATT
26019797 AAAAAATT
1 AAAAAATT
26019805 AAA
1 AAA
26019808 TATTATTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAAATT
Found at i:26024626 original size:32 final size:32
Alignment explanation
Indices: 26024570--26024679 Score: 132
Period size: 32 Copynumber: 3.5 Consensus size: 32
26024560 AAATGGCAAC
* *
26024570 AAGCCATAAGTA-CATTAATATGATTGGCACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
* *
26024601 AAGCCATCAGTAGTAGTAATATGATTGGAACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
* * * * *
26024633 CAGCCATCAGTAACGGTAACATGATCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATTGGCACA
26024665 AAGCCATCAGTAGCA
1 AAGCCATCAGTAGCA
26024680 TCGCAGCAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
31 11 0.17
32 53 0.83
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATTGGCACA
Found at i:26024715 original size:26 final size:26
Alignment explanation
Indices: 26024679--26024732 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26024669 CATCAGTAGC
* *
26024679 ATCGCAGCAAAGCTGTCAGCAACAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
*
26024705 ATCGCAACAAAGCTGCCAGTAACAGT
1 ATCGCAACAAAGCTGCCAGCAACAGT
26024731 AT
1 AT
26024733 ATGTGGCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCAGCAACAGT
Found at i:26024775 original size:27 final size:27
Alignment explanation
Indices: 26024720--26024784 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
26024710 AACAAAGCTG
*
26024720 CCAGTAACAGTATATGTGGCCAAGTCA
1 CCAGTAACAGTATATGTGGCCAAGCCA
26024747 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
1 CCAGTAACAGT-ATATGTGGCCA-AGCCA
*
26024774 CCAAT-ACAGTA
1 CCAGTAACAGTA
26024785 CTTCCTCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 24 0.71
28 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCCAAGCCA
Found at i:26024880 original size:24 final size:24
Alignment explanation
Indices: 26024860--26024906 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26024850 ACGGTCAAAC
*
26024860 AAATCACAGACAAATCAGTCATAA
1 AAATCACAGAAAAATCAGTCATAA
*
26024884 AAATCATAGAAAAATCAGTCATA
1 AAATCACAGAAAAATCAGTCATA
26024907 CATAACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.55, C:0.17, G:0.09, T:0.19
Consensus pattern (24 bp):
AAATCACAGAAAAATCAGTCATAA
Found at i:26025141 original size:27 final size:27
Alignment explanation
Indices: 26025111--26025525 Score: 371
Period size: 27 Copynumber: 15.4 Consensus size: 27
26025101 GGACACTTCG
*
26025111 GTAATTTTGCCCATC-AGGGGTATTTTA
1 GTAATTTTACCCATCGA-GGGTATTTTA
* * *
26025138 GTAATTTTACCCTTCGGGGGTA-TTTC
1 GTAATTTTACCCATCGAGGGTATTTTA
* * * *
26025164 GATAATTTTACCCATTGACGATA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
* *
26025191 GATAATTTTACCTATCGAGGGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
*
26025218 GATAATTTTATCCATCGAGGGTATTTT-
1 G-TAATTTTACCCATCGAGGGTATTTTA
* * *
26025245 GATAATTTTACCTATCGGGGGTATTTCA
1 G-TAATTTTACCCATCGAGGGTATTTTA
* * * *
26025273 GTAATTTTATCCATTGGGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
*
26025300 GTAATTTTACCCATCGAGGGTA-TTTC
1 GTAATTTTACCCATCGAGGGTATTTTA
* *
26025326 GATAATTTTACCCATCGAAGGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
* *
26025353 GATAATTTTACCCATCGAGAGTA-TTTC
1 G-TAATTTTACCCATCGAGGGTATTTTA
*
26025380 GTAATTTTACCCATCGAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
* * **
26025407 GTAATTTTACTCATAGAGGGTATTTCG
1 GTAATTTTACCCATCGAGGGTATTTTA
* ** *
26025434 GTAATTTTACCCTTTAAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
* *
26025461 GTAATTTTACCCTTCGAGGGTATTTCA
1 GTAATTTTACCCATCGAGGGTATTTTA
* *
26025488 ATAATTTTACCCTTCGAGGGTATTTT-
1 GTAATTTTACCCATCGAGGGTATTTTA
26025514 GATAATTTTACC
1 G-TAATTTTACC
26025526 TATAAGGCCT
Statistics
Matches: 335, Mismatches: 46, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
26 27 0.08
27 304 0.91
28 4 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACCCATCGAGGGTATTTTA
Found at i:26025170 original size:54 final size:55
Alignment explanation
Indices: 26025107--26025525 Score: 450
Period size: 54 Copynumber: 7.8 Consensus size: 55
26025097 ACAGGGACAC
* * *
26025107 TTCGGTAATTTTGCCCATC-AGGGGTATTTTAG-TAATTTTACCCTTCGGGGGTAT
1 TTCGATAATTTTACCCATCGA-GGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * * *
26025161 TTCGATAATTTTACCCATTGACGATA-TTTCGATAATTTTA-CCTATCGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCT-TCGAGGGTAT
* *
26025215 TTCGATAATTTTATCCATCGAGGGTATTTT-GATAATTTTA-CCTATCGGGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCT-TCGAGGGTAT
* * * * *
26025269 TTC-AGTAATTTTATCCATTGGGGGTATTTCAG-TAATTTTACCCATCGAGGGTAT
1 TTCGA-TAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * * *
26025323 TTCGATAATTTTACCCATCGAAGGTA-TTTCGATAATTTTACCCATCGAGAGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * * *
26025377 TTCG-TAATTTTACCCATCGAGGGTATTTCAG-TAATTTTACTCATAGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* * ** *
26025430 TTCGGTAATTTTACCCTTTAAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTAT
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
* *
26025484 TTCAATAATTTTACCCTTCGAGGGTATTTT-GATAATTTTACC
1 TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACC
26025526 TATAAGGCCT
Statistics
Matches: 312, Mismatches: 41, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
53 55 0.18
54 249 0.80
55 8 0.03
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (55 bp):
TTCGATAATTTTACCCATCGAGGGTATTTTAGATAATTTTACCCTTCGAGGGTAT
Found at i:26025199 original size:81 final size:80
Alignment explanation
Indices: 26025107--26025525 Score: 468
Period size: 81 Copynumber: 5.2 Consensus size: 80
26025097 ACAGGGACAC
* * * *
26025107 TTCGGTAATTTTGCCCATCAGGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGATAATTT
1 TTCGATAATTTTACCCATC-GGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTT
* * *
26025172 TACCCATTGACGATAT
65 TACCCATCGAGGGTAT
* * * *
26025188 TTCGATAATTTTACCTATCGAGGGTA-TTTCGATAATTTTATCCATCGAGGGTATTTTGATAATT
1 TTCGATAATTTTACCCATCG-GGGTATTTTAG-TAATTTTACCCATCGAGGGTATTTCGATAATT
* *
26025252 TTACCTATCGGGGGTAT
64 TTACCCATCGAGGGTAT
* * *
26025269 TTC-AGTAATTTTATCCATTGGGGGTATTTCAGTAATTTTACCCATCGAGGGTATTTCGATAATT
1 TTCGA-TAATTTTACCCA-TCGGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATT
*
26025333 TTACCCATCGAAGGTAT
64 TTACCCATCGAGGGTAT
* *
26025350 TTCGATAATTTTACCCATCGAGAGTA-TTTCGTAATTTTACCCATCGAGGGTATTTC-AGTAATT
1 TTCGATAATTTTACCCATCG-GGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGA-TAATT
* *
26025413 TTACTCATAGAGGGTAT
64 TTACCCATCGAGGGTAT
* * ** * * *
26025430 TTCGGTAATTTTACCCTTTAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCAATAATTT
1 TTCGATAATTTTACCC-ATCGGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTT
*
26025495 TACCCTTCGAGGGTAT
65 TACCCATCGAGGGTAT
*
26025511 TTTGATAATTTTACC
1 TTCGATAATTTTACC
26025526 TATAAGGCCT
Statistics
Matches: 283, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.00
80 74 0.26
81 201 0.71
82 7 0.02
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (80 bp):
TTCGATAATTTTACCCATCGGGGTATTTTAGTAATTTTACCCATCGAGGGTATTTCGATAATTTT
ACCCATCGAGGGTAT
Found at i:26031861 original size:11 final size:10
Alignment explanation
Indices: 26031839--26031871 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
26031829 GTGTAGATTC
26031839 AAAAAAA-CA
1 AAAAAAATCA
26031848 AAAAAAATCTA
1 AAAAAAATC-A
26031859 AAAAAAATCA
1 AAAAAAATCA
26031869 AAA
1 AAA
26031872 TCAAAGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 5 0.23
11 10 0.45
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAATCA
Found at i:26031925 original size:12 final size:13
Alignment explanation
Indices: 26031892--26031925 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26031882 AAGAGAAATT
*
26031892 AAAAGAAAGAAGA
1 AAAAGAAAAAAGA
26031905 AAAAGAAAAAAG-
1 AAAAGAAAAAAGA
26031917 AAAAGAAAA
1 AAAAGAAAA
26031926 GGAGAGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:26032781 original size:6 final size:6
Alignment explanation
Indices: 26032760--26032798 Score: 51
Period size: 6 Copynumber: 6.0 Consensus size: 6
26032750 AAAAAGGGGG
26032760 TGAAAA GTGAAAAA TGAAAA TGAAAAA TGAAAA TGAAAA
1 TGAAAA -TG-AAAA TGAAAA TG-AAAA TGAAAA TGAAAA
26032799 AGTAAAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 16 0.53
7 10 0.33
8 4 0.13
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (6 bp):
TGAAAA
Done.