Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 93 of 230
Found at i:26032799 original size:7 final size:7
Alignment explanation
Indices: 26032760--26032808 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
26032750 AAAAAGGGGG
*
26032760 TGAAAAG
1 TGAAAAA
26032767 TGAAAAA
1 TGAAAAA
26032774 TG-AAAA
1 TGAAAAA
26032780 TGAAAAA
1 TGAAAAA
26032787 TG-AAAA
1 TGAAAAA
26032793 TGAAAAA
1 TGAAAAA
26032800 -GTAAAAA
1 TG-AAAAA
26032807 TG
1 TG
26032809 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
6 13 0.35
7 23 0.62
8 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:26032799 original size:20 final size:19
Alignment explanation
Indices: 26032760--26032808 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
26032750 AAAAAGGGGG
*
26032760 TGAAAAGTGAAAAATGAAAA
1 TGAAAAATG-AAAATGAAAA
26032780 TGAAAAATGAAAATGAAAA
1 TGAAAAATGAAAATGAAAA
*
26032799 AGTAAAAATG
1 TG-AAAAATG
26032809 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.16
Consensus pattern (19 bp):
TGAAAAATGAAAATGAAAA
Found at i:26032805 original size:13 final size:13
Alignment explanation
Indices: 26032760--26032799 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
26032750 AAAAAGGGGG
26032760 TGAAAAGTGAAAAA
1 TGAAAA-TGAAAAA
26032774 TGAAAATGAAAAA
1 TGAAAATGAAAAA
26032787 TGAAAATGAAAAA
1 TGAAAATGAAAAA
26032800 GTAAAAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (13 bp):
TGAAAATGAAAAA
Found at i:26034182 original size:87 final size:87
Alignment explanation
Indices: 26034036--26034656 Score: 843
Period size: 87 Copynumber: 7.1 Consensus size: 87
26034026 AAGATCAGTG
* * *
26034036 AAGATAGCAGATCTTTCCTTCCTGCATTGACAGTGAAGCAGATTGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* *
26034101 TCGGTTGTAATGGAGCTGGTTA
66 TCGGTTGCAGTGGAGCTGGTTA
* *
26034123 AAGATAGTAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
26034188 TCGGTTGCAGTGGAGCTGGTTA
66 TCGGTTGCAGTGGAGCTGGTTA
26034210 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
26034275 TCGGTTGCAGTGGAG-TAGGTTA
66 TCGGTTGCAGTGGAGCT-GGTTA
* ** ** * *
26034297 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGTAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG-A-AAACAAAGCCTTGCCTC
* * *
26034362 CCTCGGTTGCAGTGGAGCAGGTTG
64 CATCGGTTGCAGTGGAGCTGGTTA
* * ** * * *
26034386 AAGATAGCAGATCTTGCCTTCTTACGCTGACAACGAAGCAGATCTAAGATAC-CAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC
* *
26034450 CCTCGGTTGCAGTGGAGCAGGTTA
64 CATCGGTTGCAGTGGAGCTGGTTA
26034474 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
26034539 TCGGTTGCAGTGGAG-TAGGTTA
66 TCGGTTGCAGTGGAGCT-GGTTA
* ** * *
26034561 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAACGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG-A-AAACAAAGCCTTGCCTC
* * *
26034626 CCTCGGTTGCAGTGGAGCAGGTTG
64 CATCGGTTGCAGTGGAGCTGGTTA
26034650 AAGATAG
1 AAGATAG
26034657 GGGATTTTAC
Statistics
Matches: 480, Mismatches: 43, Indels: 20
0.88 0.08 0.04
Matches are distributed among these distances:
86 3 0.01
87 279 0.58
88 79 0.16
89 119 0.25
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (87 bp):
AAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
TCGGTTGCAGTGGAGCTGGTTA
Found at i:26034184 original size:43 final size:43
Alignment explanation
Indices: 26034135--26034271 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 43
26034125 GATAGTAGAT
26034135 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGC
* * * * * * * *
26034178 CTTGCC-TCCAT-CGGTTG-CAGTGGAGCTGGT-TAAAGATAGCAGAT
1 CTTGCCTTCC-TGC-ATTGACAGTGAAGCAGATCGAAA-ACA-AAG-C
*
26034222 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGC
26034265 CTTGCCT
1 CTTGCCT
26034272 CCATCGGTTG
Statistics
Matches: 68, Mismatches: 17, Indels: 18
0.66 0.17 0.17
Matches are distributed among these distances:
41 3 0.04
42 16 0.24
43 19 0.28
44 12 0.18
45 15 0.22
46 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (43 bp):
CTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAAACAAAGC
Found at i:26034503 original size:264 final size:263
Alignment explanation
Indices: 26034036--26034656 Score: 978
Period size: 264 Copynumber: 2.4 Consensus size: 263
26034026 AAGATCAGTG
* * ** * * *
26034036 AAGATAGCAGATCTTTCCTTCCTGCATTGACAGTGAAGCAGATTG-A-AAACAAAGCCTTGCCTC
1 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
* * * * * * * * **
26034099 CATCGGTTGTAATGGAGCTGGTTAAAGATAGTAGATCTTGCCTTCCTGCATTGACAGTGAAGCAG
66 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACTGACAACGAAGCAG
*
26034164 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
131 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCT
26034229 TCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAGG
196 TCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAGG
26034294 TTA
261 TTA
*
26034297 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGTAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
* *
26034362 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCTTACGCTGACAACGAAGCAG
66 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACTGACAACGAAGCAG
* * *
26034427 ATCTAAGATAC-CAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
131 ATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGC
26034491 CTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTA
194 CTTCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTA
26034556 GGTTA
259 GGTTA
*
26034561 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAACGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
1 AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
26034626 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAG
66 CCTCGGTTGCAGTGGAGCAGGTTGAAGATAG
26034657 GGGATTTTAC
Statistics
Matches: 330, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
261 38 0.12
262 1 0.00
263 74 0.22
264 215 0.65
265 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (263 bp):
AAGATAGTAGATCTTGCCTTCCTGCGCTGACAATGAAGCAGATCGAAGAAATAAAGCCTTGCCTC
CCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACACTGACAACGAAGCAG
ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCT
TCCTGCATTGACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGTAGG
TTA
Found at i:26034777 original size:50 final size:50
Alignment explanation
Indices: 26034723--26034876 Score: 157
Period size: 50 Copynumber: 3.1 Consensus size: 50
26034713 TCCTGAGCGG
* *
26034723 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
** * * * * * * * **
26034773 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTTCCCTGGCGG
1 TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
* *
26034823 TGCAGTGGAACAGATTAACGCCACAAT-GGCGAATCTTACTTCTCCGACAT
1 TGCAGTGGAACAGATTAAAGCCAC-ATCGGCGAATCTTACTTCCCCGACAT
26034873 TGCA
1 TGCA
26034877 ATTAAAAAAG
Statistics
Matches: 77, Mismatches: 26, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
50 76 0.99
51 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (50 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACAT
Found at i:26034933 original size:51 final size:50
Alignment explanation
Indices: 26034851--26034949 Score: 117
Period size: 51 Copynumber: 2.0 Consensus size: 50
26034841 CGCCACAATG
* **
26034851 GCGAATCTTACTTCTCCGACATTGCAATTAAAAAAGATTAAAGCTACGACA
1 GCGAATCTTACTTCTCCAACATCACAATT-AAAAAGATTAAAGCTACGACA
* * * * *
26034902 GCGAATCTTGCTTCTTCAACATCACAGTTAAACAGATTAAAGTTACGA
1 GCGAATCTTACTTCTCCAACATCACAATTAAAAAGATTAAAGCTACGA
26034950 GTTACAAATC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
50 17 0.43
51 23 0.57
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (50 bp):
GCGAATCTTACTTCTCCAACATCACAATTAAAAAGATTAAAGCTACGACA
Found at i:26034940 original size:101 final size:100
Alignment explanation
Indices: 26034725--26034943 Score: 237
Period size: 100 Copynumber: 2.2 Consensus size: 100
26034715 CTGAGCGGTG
* * * *
26034725 CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGAAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTA
* ** * *
26034790 AAGCTACAACAGCGAATCTTATTTCCCTGGCGGTG
66 AAGCTACAACAGCGAATCTTACTTCCCTAACGATA
* * *
26034825 CAGTGGAACAGATTAACGCCACAAT-GGCGAATCTTACTTCTCCGACATTGCAATTAAAAAAGAT
1 CAGTGAAACAGATTAAAGCCAC-ATCGGCGAATCTTACTTCCCCGACATTGCAATT-AAAAAGAT
* * *
26034889 TAAAGCTACGACAGCGAATCTTGCTT-CTTCAAC-ATCA
64 TAAAGCTACAACAGCGAATCTTACTTCCCT-AACGAT-A
*
26034926 CAGTTAAACAGATTAAAG
1 CAGTGAAACAGATTAAAG
26034944 TTACGAGTTA
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
100 50 0.51
101 49 0.49
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (100 bp):
CAGTGAAACAGATTAAAGCCACATCGGCGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTA
AAGCTACAACAGCGAATCTTACTTCCCTAACGATA
Found at i:26037812 original size:28 final size:28
Alignment explanation
Indices: 26037757--26037846 Score: 155
Period size: 28 Copynumber: 3.2 Consensus size: 28
26037747 GAAAGTTCGA
*
26037757 TAATTTTACCC-TTCAAGGGTATTTCAG
1 TAATTTTACCCTTTCGAGGGTATTTCAG
26037784 TAATTTTACCCTTTCGAGGGTATTTCAG
1 TAATTTTACCCTTTCGAGGGTATTTCAG
*
26037812 TAATTTTACCCTTTCGAGGGTATTTCAA
1 TAATTTTACCCTTTCGAGGGTATTTCAG
26037840 TAATTTT
1 TAATTTT
26037847 CCCATGAATC
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
27 11 0.18
28 49 0.82
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.44
Consensus pattern (28 bp):
TAATTTTACCCTTTCGAGGGTATTTCAG
Found at i:26039830 original size:37 final size:37
Alignment explanation
Indices: 26039780--26039858 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26039770 TTATTACGAA
* *
26039780 GTCTTACCCGGACATAA-TCTCCACACGGAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGGAGTCATCGG
*
26039817 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
26039854 GTCTT
1 GTCTT
26039859 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
Found at i:26040055 original size:47 final size:47
Alignment explanation
Indices: 26039977--26040381 Score: 657
Period size: 47 Copynumber: 8.6 Consensus size: 47
26039967 CCCTTCGGGA
* * * * * * *
26039977 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26040024 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26040071 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26040118 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26040165 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26040212 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26040259 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26040308 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26040355 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26040382 GCCTTATCAC
Statistics
Matches: 338, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 292 0.86
49 46 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26040380 original size:16 final size:16
Alignment explanation
Indices: 26040359--26040409 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26040349 TTAGGCCTTA
26040359 TCACATATATACACTT
1 TCACATATATACACTT
*
26040375 TCAC--AT-TGC-CTT
1 TCACATATATACACTT
26040387 ATCACATATATACACTT
1 -TCACATATATACACTT
26040404 TCACAT
1 TCACAT
26040410 TCATCACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
12 3 0.11
13 6 0.21
14 2 0.07
15 2 0.07
16 12 0.43
17 3 0.11
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.37
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:26040387 original size:29 final size:29
Alignment explanation
Indices: 26040353--26040410 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26040343 CGGCTATTAG
26040353 GCCTTATCACATATATACACTTTCACATT
1 GCCTTATCACATATATACACTTTCACATT
26040382 GCCTTATCACATATATACACTTTCACATT
1 GCCTTATCACATATATACACTTTCACATT
26040411 CATCACATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (29 bp):
GCCTTATCACATATATACACTTTCACATT
Found at i:26040389 original size:76 final size:76
Alignment explanation
Indices: 26040306--26040457 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
26040296 CGGCCATTAG
26040306 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26040371 ACTTTCACATT
66 ACTTTCACATT
26040382 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26040447 ACTTTCACATT
66 ACTTTCACATT
26040458 CATCACATCG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (76 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATT
Found at i:26040409 original size:123 final size:124
Alignment explanation
Indices: 26040257--26040504 Score: 453
Period size: 123 Copynumber: 2.0 Consensus size: 124
26040247 CGGCCATTAG
26040257 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
26040322 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
65 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
*
26040382 GCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
26040446 CACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCACACATATACACTTTCACATT
66 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
26040505 CATCACATCG
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
123 110 0.92
125 10 0.08
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (124 bp):
GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
Found at i:26040435 original size:47 final size:47
Alignment explanation
Indices: 26040382--26040686 Score: 547
Period size: 47 Copynumber: 6.4 Consensus size: 47
26040372 CTTTCACATT
26040382 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26040429 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
* * *
26040476 GCCTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
* *
26040523 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAA
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAG
26040572 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26040619 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26040666 GCCTTATCACATATATACACT
1 GCCTTATCACATATATACACT
26040687 GTCTTGGCTG
Statistics
Matches: 248, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 203 0.82
49 45 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
Found at i:26040590 original size:266 final size:266
Alignment explanation
Indices: 26040116--26040647 Score: 1046
Period size: 266 Copynumber: 2.0 Consensus size: 266
26040106 CGGCTATTAG
26040116 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26040181 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
*
26040246 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
131 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
26040311 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
196 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
26040376 CACATT
261 CACATT
26040382 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
*
26040447 ACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
26040512 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
131 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
26040577 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
196 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
26040642 CACATT
261 CACATT
26040648 CATCACATCG
Statistics
Matches: 264, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 264 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (266 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
CACATT
Found at i:26040637 original size:313 final size:312
Alignment explanation
Indices: 26040069--26040686 Score: 1139
Period size: 313 Copynumber: 2.0 Consensus size: 312
26040059 CGGCCATTAG
*
26040069 GCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
*
26040134 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
* *
26040199 TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTAT
26040264 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
196 CACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
26040329 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
260 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
26040382 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
*
26040447 ACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
*
26040512 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
131 TCGGCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
*
26040577 ATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
194 ATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
26040641 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
259 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
26040687 GTCTTGGCTG
Statistics
Matches: 296, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
313 251 0.85
315 45 0.15
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (312 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTAT
CACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:26044284 original size:40 final size:40
Alignment explanation
Indices: 26044240--26044505 Score: 406
Period size: 40 Copynumber: 6.5 Consensus size: 40
26044230 TCTTCGAGGT
* * * *
26044240 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
26044280 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
26044320 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
26044360 TTAGCCCGGATACATCACTAGCACGAATGCTGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAG--C--A--C-GAATGCTCCTCGGGAC
26044407 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
26044447 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
26044487 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
26044506 CTCAATTCTC
Statistics
Matches: 210, Mismatches: 9, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
40 168 0.80
41 1 0.00
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
46 1 0.00
47 36 0.17
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:26044450 original size:87 final size:87
Alignment explanation
Indices: 26044304--26044477 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
26044294 TCACTAGCAC
26044304 GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
1 GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
26044369 ATACATCACTAGCACGAATGCT
66 ATACATCACTAGCACGAATGCT
26044391 GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
1 GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
*
26044456 ATATATCACTAGCACGAATGCT
66 ATACATCACTAGCACGAATGCT
26044478 CCTCGGGGCT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (87 bp):
GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
ATACATCACTAGCACGAATGCT
Found at i:26044459 original size:127 final size:127
Alignment explanation
Indices: 26044264--26044505 Score: 439
Period size: 127 Copynumber: 1.9 Consensus size: 127
26044254 TTACTAGCAC
*
26044264 GAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
1 GAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
26044329 ATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCT
66 ATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCT
* *
26044391 GAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
1 GAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
* *
26044456 ATATATCACTAGCACGAATGCTCCTCGGGGCTTAGCCCGGATATATCACT
66 ATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACT
26044506 CTCAATTCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 110 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (127 bp):
GAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGG
ATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCT
Found at i:26046373 original size:37 final size:37
Alignment explanation
Indices: 26046323--26046401 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26046313 TTATTACGAA
* *
26046323 GTCTTACCCGGACATAA-TCTCCACACGGAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGGAGTCATCGG
*
26046360 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
26046397 GTCTT
1 GTCTT
26046402 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGGAGTCATCGG
Found at i:26046598 original size:47 final size:47
Alignment explanation
Indices: 26046520--26046877 Score: 572
Period size: 47 Copynumber: 7.6 Consensus size: 47
26046510 CCCTTCGGGA
* * * * * * *
26046520 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26046567 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26046614 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26046661 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26046708 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26046755 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26046804 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26046851 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26046878 GCCTTATCAC
Statistics
Matches: 291, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 245 0.84
49 46 0.16
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26046876 original size:16 final size:16
Alignment explanation
Indices: 26046855--26046905 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26046845 TTAGGCCTTA
26046855 TCACATATATACACTT
1 TCACATATATACACTT
*
26046871 TCAC--AT-TGC-CTT
1 TCACATATATACACTT
26046883 ATCACATATATACACTT
1 -TCACATATATACACTT
26046900 TCACAT
1 TCACAT
26046906 TCATCACATC
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
12 3 0.11
13 6 0.21
14 2 0.07
15 2 0.07
16 12 0.43
17 3 0.11
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.37
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:26046883 original size:29 final size:29
Alignment explanation
Indices: 26046849--26046906 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26046839 CGGCTATTAG
26046849 GCCTTATCACATATATACACTTTCACATT
1 GCCTTATCACATATATACACTTTCACATT
26046878 GCCTTATCACATATATACACTTTCACATT
1 GCCTTATCACATATATACACTTTCACATT
26046907 CATCACATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (29 bp):
GCCTTATCACATATATACACTTTCACATT
Found at i:26046885 original size:76 final size:76
Alignment explanation
Indices: 26046802--26046953 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
26046792 CGGCCATTAG
26046802 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26046867 ACTTTCACATT
66 ACTTTCACATT
26046878 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26046943 ACTTTCACATT
66 ACTTTCACATT
26046954 CATCACATCG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (76 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATT
Found at i:26046905 original size:123 final size:124
Alignment explanation
Indices: 26046753--26047000 Score: 453
Period size: 123 Copynumber: 2.0 Consensus size: 124
26046743 CGGCCATTAG
26046753 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
26046818 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
65 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
*
26046878 GCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
26046942 CACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCACACATATACACTTTCACATT
66 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
26047001 CATCACATCG
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
123 110 0.92
125 10 0.08
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (124 bp):
GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATT
Found at i:26046931 original size:47 final size:47
Alignment explanation
Indices: 26046878--26047135 Score: 471
Period size: 47 Copynumber: 5.4 Consensus size: 47
26046868 CTTTCACATT
26046878 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26046925 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
* * *
26046972 GCCTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26047019 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAG
26047068 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
26047115 GCCTTATCACATATATACACT
1 GCCTTATCACATATATACACT
26047136 GTCTTGGCTG
Statistics
Matches: 203, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 158 0.78
49 45 0.22
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
Found at i:26047038 original size:219 final size:218
Alignment explanation
Indices: 26046659--26047096 Score: 806
Period size: 219 Copynumber: 2.0 Consensus size: 218
26046649 CGGCTATTAG
26046659 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
*
26046724 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ACATATACACTTTCACATTCATCA
26046789 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
130 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
26046854 ATCACATATATACACTTTCACATT
195 ATCACATATATACACTTTCACATT
*
26046878 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
* *
26046943 ACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCAC-ACATATACACTTTCACATTCATCAC
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATATACACTTTCACATTCATCAC
26047007 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
131 ATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
26047072 TATCACATATATACACTTTCACATT
194 TATCACATATATACACTTTCACATT
26047097 CATCACATCG
Statistics
Matches: 213, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
217 46 0.22
219 167 0.78
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (218 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TCACATATATACACTTTCACATT
Found at i:26047059 original size:96 final size:96
Alignment explanation
Indices: 26046878--26047131 Score: 467
Period size: 96 Copynumber: 2.7 Consensus size: 96
26046868 CTTTCACATT
26046878 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATAT
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
26046941 ACACTTTCACATTCATCACATCGGCTATTAG
66 ACACTTTCACATTCATCACATCGGCTATTAG
* * *
26046972 GCCTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
26047037 ACACTTTCACATTCATCACATCGGCTATTAG
66 ACACTTTCACATTCATCACATCGGCTATTAG
26047068 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
26047132 CACTGTCTTG
Statistics
Matches: 152, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 54 0.36
96 98 0.64
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCTATTAG
Found at i:26047086 original size:266 final size:266
Alignment explanation
Indices: 26046612--26047135 Score: 1021
Period size: 266 Copynumber: 2.0 Consensus size: 266
26046602 CGGCCATTAG
*
26046612 GCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
26046677 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
26046742 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
131 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
26046807 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
196 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
26046872 CACATT
261 CACATT
26046878 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
*
26046943 ACTTTCACATTCATCACATCGGCTATTAGGCCTTGTCACACATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
*
26047008 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
131 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
26047073 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
196 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
26047136 GTCTTGGCTG
Statistics
Matches: 255, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 255 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (266 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
CACATT
Found at i:26049667 original size:35 final size:32
Alignment explanation
Indices: 26049595--26049667 Score: 74
Period size: 35 Copynumber: 2.2 Consensus size: 32
26049585 GAAAGGGGAA
* * **
26049595 AAGAGGTTCGGCCAACAAGAAGAAAAGCATTG
1 AAGAGGTTCGGCCAACAAAAAGAAAAACAGAG
*
26049627 GAGAGGTTCGGCCAAATGCAAAAAGAAAAACAGAG
1 AAGAGGTTCGGCC-AA--CAAAAAGAAAAACAGAG
26049662 AAGAGG
1 AAGAGG
26049668 AGCAAAATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
32 12 0.38
33 2 0.06
35 18 0.56
ACGTcount: A:0.47, C:0.14, G:0.30, T:0.10
Consensus pattern (32 bp):
AAGAGGTTCGGCCAACAAAAAGAAAAACAGAG
Found at i:26053740 original size:41 final size:40
Alignment explanation
Indices: 26053678--26053910 Score: 270
Period size: 41 Copynumber: 5.7 Consensus size: 40
26053668 CATTTGGTGC
* ** * *
26053678 TTTAGCAGCGTTTTTGAAAAAGTACTGCTAATGCTCAGAGA
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAG-GT
* **
26053719 TTTAGCGGCGTTTTTCG-AAAAGCGCCGCTAATACTCAATT
1 TTTAGCGGCGTTTTT-GAAAAAGCGCCGCTAATGCTCAGGT
*
26053759 CTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGGCT
1 -TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGG-T
*
26053801 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCATGCT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA-GGT
* **
26053842 TTTAGCGACGTTTTTGAAAAAGCATCGCTAATGCTCAGGCT
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGG-T
* *
26053883 TTTAGTGGCGTTTTTGATAAAGCGCCGC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGC
26053911 AAAAACATTT
Statistics
Matches: 163, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
40 1 0.01
41 159 0.98
42 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGGT
Found at i:26053814 original size:82 final size:80
Alignment explanation
Indices: 26053675--26053910 Score: 312
Period size: 82 Copynumber: 2.9 Consensus size: 80
26053665 GACCATTTGG
* * * *
26053675 TGCTTTAGCAGCGTTTTTGAAAAAGTACTGCTAATGCTCAGAG-ATTTAGCGGCGTTTTTCGAAA
1 TGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAG-GCTTTTAGCGGCGTTTTT-GAAA
26053739 AGCGCCGCTAATACTCAA
64 AGCGCCGCTAATACTC-A
* * *
26053757 TTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGGCTTTTAGCGGCGTTTTTGAAAAA
1 TGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGGCTTTTAGCGGCGTTTTTG-AAAA
*
26053822 GCGCCGCTAATGCTCA
65 GCGCCGCTAATACTCA
* * *
26053838 TGCTTTTAGCGACGTTTTTGAAAAAGCATCGCTAATGCTCAGGCTTTTAGTGGCGTTTTTGATAA
1 TGC-TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGGCTTTTAGCGGCGTTTTTGA-AA
26053903 AGCGCCGC
64 AGCGCCGC
26053911 AAAAACATTT
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
81 6 0.04
82 130 0.96
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (80 bp):
TGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGGCTTTTAGCGGCGTTTTTGAAAAG
CGCCGCTAATACTCA
Found at i:26054251 original size:14 final size:14
Alignment explanation
Indices: 26054234--26054270 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
26054224 GGGTTTAATA
*
26054234 TATATGTTTTAGGG
1 TATATGGTTTAGGG
26054248 TATATGGTTTAGGG
1 TATATGGTTTAGGG
26054262 TATATGGTT
1 TATATGGTT
26054271 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (14 bp):
TATATGGTTTAGGG
Found at i:26054347 original size:14 final size:15
Alignment explanation
Indices: 26054319--26054351 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26054309 AAGGTTTATA
26054319 GATTATGGAATTAGG
1 GATTATGGAATTAGG
26054334 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
26054348 GATT
1 GATT
26054352 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:26054515 original size:138 final size:140
Alignment explanation
Indices: 26054371--26054638 Score: 341
Period size: 145 Copynumber: 1.9 Consensus size: 140
26054361 GGGTTGCGAT
* *
26054371 TTAGGGG-TTA-AGGGTTAGGGGTTAGAGATTAAGAGTTAA-GAATTTAGGGTTTATG-GA-TTC
1 TTAGGGGTTTAGAGGGTTAGGGGTTAGAGATTAAGAATTAATG-ATTTAGGGTTTA-GAGATTTA
* *
26054431 AGTGT-CAGGATAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGG
64 AG-GTCCA-GATAGGGTTTAAGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAGG
26054495 TTTAGGGGTAGTAG
127 TTTAGGGGTAGTAG
* *
26054509 TTAGGGGTTTAGGGTTTTGGGTTAGGGGTTAGAGGTTAAGAATTAATGATTTAGGGTTTAGAGAT
1 TTAGGGGTTTA--G---AGGGTTAGGGGTTAGAGATTAAGAATTAATGATTTAGGGTTTAGAGAT
* *
26054574 TTAAGGTCCAGTTAGGGTTTAAGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAATTAAG
61 TTAAGGTCCAGATAGGGTTTAAGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAG
26054639 TTCTTATATA
Statistics
Matches: 111, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
138 7 0.06
139 3 0.03
144 1 0.01
145 93 0.84
146 7 0.06
ACGTcount: A:0.29, C:0.01, G:0.29, T:0.41
Consensus pattern (140 bp):
TTAGGGGTTTAGAGGGTTAGGGGTTAGAGATTAAGAATTAATGATTTAGGGTTTAGAGATTTAAG
GTCCAGATAGGGTTTAAGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAGGTTTA
GGGGTAGTAG
Found at i:26059663 original size:43 final size:43
Alignment explanation
Indices: 26059610--26059749 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 43
26059600 AGCATGTTTC
* ** *
26059610 TAGCGGCGTTTTTAA-AAAAGCGTCGCTAAAAGTCATTTTTTT
1 TAGCGGCGTTTGTAACAAAAGCGTCGCTAAAAGTCATGATCTT
* *
26059652 ATAGCGGCGTTTGTAACATAAGCGTCGCTAAAGGTCATGATCTT
1 -TAGCGGCGTTTGTAACAAAAGCGTCGCTAAAAGTCATGATCTT
** * * * *
26059696 TAGCGGCGTTTGTAGTATATGCGCCGCTAAATA-TCATGGTCTT
1 TAGCGGCGTTTGTAACAAAAGCGTCGCTAAA-AGTCATGATCTT
26059739 TAGCGGCGTTT
1 TAGCGGCGTTT
26059750 TTTCACATAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
43 61 0.73
44 22 0.27
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TAGCGGCGTTTGTAACAAAAGCGTCGCTAAAAGTCATGATCTT
Found at i:26062306 original size:25 final size:25
Alignment explanation
Indices: 26062273--26062329 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
26062263 AGTTGTAAAT
*
26062273 GGTAAGCTCCTCCGAGCTAAATAAC
1 GGTAAGCTCCTCCAAGCTAAATAAC
* * *
26062298 GGTATGCTCCTCCAAGCTGAATAAT
1 GGTAAGCTCCTCCAAGCTAAATAAC
26062323 GGTAAGC
1 GGTAAGC
26062330 ACATACAAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (25 bp):
GGTAAGCTCCTCCAAGCTAAATAAC
Found at i:26069822 original size:17 final size:17
Alignment explanation
Indices: 26069755--26069823 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
26069745 CTACTTAGAG
*
26069755 TTTTCATAGTCTATAG-
1 TTTTCACAGTCTATAGT
* * *
26069771 TTGTCTCAGTTTATAGT
1 TTTTCACAGTCTATAGT
* **
26069788 GTTTCATTGTCTATAGT
1 TTTTCACAGTCTATAGT
26069805 TTTTCACAGTCTATAGT
1 TTTTCACAGTCTATAGT
26069822 TT
1 TT
26069824 CAAATCTGAA
Statistics
Matches: 39, Mismatches: 13, Indels: 1
0.74 0.25 0.02
Matches are distributed among these distances:
16 12 0.31
17 27 0.69
ACGTcount: A:0.20, C:0.13, G:0.14, T:0.52
Consensus pattern (17 bp):
TTTTCACAGTCTATAGT
Found at i:26071158 original size:48 final size:47
Alignment explanation
Indices: 26071092--26071182 Score: 155
Period size: 48 Copynumber: 1.9 Consensus size: 47
26071082 CACACACTAT
* *
26071092 TTGTGGACAAGCCACCACATAATTGCCGATAAATGACCACATAACACA
1 TTGTGGACAAGCCACCACATAATTGCCAAT-AACGACCACATAACACA
26071140 TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAA
26071183 TCGCAGATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 12 0.29
48 29 0.71
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.19
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAATTGCCAATAACGACCACATAACACA
Found at i:26072990 original size:27 final size:27
Alignment explanation
Indices: 26072952--26073346 Score: 225
Period size: 27 Copynumber: 14.9 Consensus size: 27
26072942 ATGACTATTT
*
26072952 TACCCCTAATA-GATAAAAATGATTGAAA
1 TACCCCT-ATAGGAT-AAAATGACTGAAA
* *
26072980 TACCCCTATAGGGTAAAATGACTGAAG
1 TACCCCTATAGGATAAAATGACTGAAA
*
26073007 TACCTCC-ATAGGGTAAAATGACTGAAA
1 TACC-CCTATAGGATAAAATGACTGAAA
*
26073034 TA-CCCTCATAGGATAAAATGACTAAAA
1 TACCCCT-ATAGGATAAAATGACTGAAA
* * * *
26073061 TACCCTTATAGGGTAGAATGACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * * * *
26073088 TACCCCCATAGGGTAGAATAACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * **
26073115 TGCCCCTATTGTG-TAAAATGACCAAAA
1 TACCCCTATAG-GATAAAATGACTGAAA
* * * **
26073142 TA-CCCTCCTAGGGTAGAATGACCAAAA
1 TACCCCT-ATAGGATAAAATGACTGAAA
*
26073169 TA-CCCTCATAAGG-TAAAAT-AATCGAAA
1 TACCCCT-AT-AGGATAAAATGACT-GAAA
* *
26073196 TACCCCTATAGGATAAAATAACCGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
* * *
26073223 CACCCTTATAGGGTAAAATGACTGAAA
1 TACCCCTATAGGATAAAATGACTGAAA
26073250 TA--CC-----G-TAAAATGA-TCGAAA
1 TACCCCTATAGGATAAAATGACT-GAAA
**
26073269 TACCCCTATAGGGGAAAATGA-TCGAAA
1 TACCCCTATAGGATAAAATGACT-GAAA
* * **
26073296 TACCCTTATAGGGTAAAATGACTGTTA
1 TACCCCTATAGGATAAAATGACTGAAA
*
26073323 TACCCCTA-GGAGATAAAATGACTG
1 TACCCCTATAG-GATAAAATGACTG
26073347 TTATGGCCTT
Statistics
Matches: 297, Mismatches: 46, Indels: 49
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.00
19 14 0.05
20 1 0.00
21 2 0.01
25 3 0.01
26 12 0.04
27 240 0.81
28 24 0.08
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (27 bp):
TACCCCTATAGGATAAAATGACTGAAA
Found at i:26073045 original size:54 final size:53
Alignment explanation
Indices: 26072967--26073346 Score: 259
Period size: 54 Copynumber: 7.2 Consensus size: 53
26072957 CTAATAGATA
* *
26072967 AAAATGATTGAAATACCCCTATAGGGTAAAATGACTGAAGTA-CCTCCATAGGGT
1 AAAATGACTGAAATACCCC-ATAGGGTAAAATGACTGAAATACCCT-CATAGGGT
* * *
26073021 AAAATGACTGAAATACCCTCATAGGATAAAATGACTAAAATACCCTTATAGGGT
1 AAAATGACTGAAATACCC-CATAGGGTAAAATGACTGAAATACCCTCATAGGGT
* * * * * * * *
26073075 AGAATGACCGAAATACCCCCATAGGGTAGAATAACCGAAATGCCC-CTATTGTGT
1 AAAATGACTGAAATA-CCCCATAGGGTAAAATGACTGAAATACCCTC-ATAGGGT
** * * ** *
26073129 AAAATGACCAAAATACCCTCCTAGGGTAGAATGACCAAAATACCCTCATAAGGT
1 AAAATGACTGAAATACCC-CATAGGGTAAAATGACTGAAATACCCTCATAGGGT
* * * * * *
26073183 AAAAT-AATCGAAATACCCCTATAGGATAAAATAACCGAAACACCCTTATAGGGT
1 AAAATGACT-GAAATACCCC-ATAGGGTAAAATGACTGAAATACCCTCATAGGGT
*
26073237 AAAATGACTGAAATA--CC-----GTAAAATGA-TCGAAATACCC-CTATAGGGG
1 AAAATGACTGAAATACCCCATAGGGTAAAATGACT-GAAATACCCTC-ATAGGGT
* **
26073283 AAAATGA-TCGAAATACCCTTATAGGGTAAAATGACTGTTATACCC-C-TAGGAGAT
1 AAAATGACT-GAAATACCC-CATAGGGTAAAATGACTGAAATACCCTCATAGG-G-T
26073337 AAAATGACTG
1 AAAATGACTG
26073347 TTATGGCCTT
Statistics
Matches: 255, Mismatches: 47, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
45 1 0.00
46 34 0.13
48 1 0.00
52 6 0.02
53 6 0.02
54 195 0.76
55 12 0.05
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (53 bp):
AAAATGACTGAAATACCCCATAGGGTAAAATGACTGAAATACCCTCATAGGGT
Found at i:26073097 original size:81 final size:80
Alignment explanation
Indices: 26072977--26073317 Score: 317
Period size: 81 Copynumber: 4.3 Consensus size: 80
26072967 AAAATGATTG
* * * *
26072977 AAATACCCCTATAGGGTAAAATGACTGAAGTACCTCCATAGGGTAAAATGACTGAAATA-CCCTC
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACTGAAATACCCCT-
*
26073041 ATAGGATAAAATGACTA
64 ATAGGATAAAATGACCA
* * * *
26073058 AAATACCCTTATAGGGTAGAATGACCGAAATACCCCCATAGGGTAGAATAACCGAAATGCCCCTA
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACTGAAATACCCCTA
*
26073123 TTGTG-TAAAATGACCA
65 TAG-GATAAAATGACCA
** * * * * *
26073139 AAATACCCTCCTAGGGTAGAATGACCAAAATACCCTCATAAGGTAAAATAATCGAAATACCCCTA
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATACT-GAAATACCCCTA
* *
26073204 TAGGATAAAATAACCG
65 TAGGATAAAATGACCA
* *
26073220 AAACACCCTTATAGGGTAAAATGACTGAAATA---CC-----GTAAAATGA-TCGAAATACCCCT
1 AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT-ACT-GAAATACCCCT
** * *
26073276 ATAGGGGAAAATGATCG
64 ATAGGATAAAATGACCA
26073293 AAATACCCTTATAGGGTAAAATGAC
1 AAATACCCTTATAGGGTAAAATGAC
26073318 TGTTATACCC
Statistics
Matches: 220, Mismatches: 35, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
73 57 0.26
74 1 0.00
78 1 0.00
80 2 0.01
81 154 0.70
82 5 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (80 bp):
AAATACCCTTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATACTGAAATACCCCTAT
AGGATAAAATGACCA
Found at i:26073259 original size:19 final size:19
Alignment explanation
Indices: 26073235--26073272 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
26073225 CCCTTATAGG
26073235 GTAAAATGA-CTGAAATACC
1 GTAAAATGATC-GAAATACC
26073254 GTAAAATGATCGAAATACC
1 GTAAAATGATCGAAATACC
26073273 CCTATAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (19 bp):
GTAAAATGATCGAAATACC
Found at i:26073279 original size:46 final size:46
Alignment explanation
Indices: 26073209--26073299 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
26073199 CCCTATAGGA
* *
26073209 TAAAATAACCGAAACACCCTTATAGGGTAAAATGA-CTGAAATACCG
1 TAAAATAACCGAAACACCCCTATAGGGGAAAATGATC-GAAATACCG
* * *
26073255 TAAAATGATCGAAATACCCCTATAGGGGAAAATGATCGAAATACC
1 TAAAATAACCGAAACACCCCTATAGGGGAAAATGATCGAAATACC
26073300 CTTATAGGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (46 bp):
TAAAATAACCGAAACACCCCTATAGGGGAAAATGATCGAAATACCG
Found at i:26073326 original size:73 final size:73
Alignment explanation
Indices: 26073181--26073319 Score: 224
Period size: 73 Copynumber: 1.9 Consensus size: 73
26073171 CCCTCATAAG
*
26073181 GTAAAATAATCGAAATACCCCTATAGGATAAAATAACCGAAACACCCTTATAGGGTAAAATGACT
1 GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCGAAACACCCTTATAGGGTAAAATGACT
26073246 GAAATACC
66 GAAATACC
* * * * *
26073254 GTAAAATGATCGAAATACCCCTATAGGGGAAAATGATCGAAATACCCTTATAGGGTAAAATGACT
1 GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCGAAACACCCTTATAGGGTAAAATGACT
26073319 G
66 G
26073320 TTATACCCCT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (73 bp):
GTAAAATAATCGAAATACCCCTATAGGAGAAAATAACCGAAACACCCTTATAGGGTAAAATGACT
GAAATACC
Found at i:26073587 original size:26 final size:26
Alignment explanation
Indices: 26073551--26073631 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
26073541 TTTGCCACAT
*
26073551 ATACTGTTACTGGAAGCTTTGCTGCG
1 ATACTGATACTGGAAGCTTTGCTGCG
* * *
26073577 ATACTGATACT-GACAGCTCTGTTGTG
1 ATACTGATACTGGA-AGCTTTGCTGCG
* * *
26073603 ATGCT-ATTATTGGCAGCTTTGCTGCG
1 ATACTGA-TACTGGAAGCTTTGCTGCG
26073629 ATA
1 ATA
26073632 TTGGTGTGTT
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
25 3 0.07
26 37 0.90
27 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (26 bp):
ATACTGATACTGGAAGCTTTGCTGCG
Found at i:26073774 original size:28 final size:28
Alignment explanation
Indices: 26073732--26073910 Score: 254
Period size: 28 Copynumber: 6.4 Consensus size: 28
26073722 TATTGCACTG
* *
26073732 CACTGTTACTATATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
*
26073760 CACTGATT-CTGTATTGGGCTCAGGCCTA
1 CACTG-TTACTGTATTGGGCTAAGGCCTA
*
26073788 CATTGTTACTGTATTGGGCTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
* * *
26073816 CACTGTTACTATATTGGGTTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
26073844 CACTGTTACTGTATTGGGCTAAGGCCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
* *
26073872 CACTATTACTGTATTGGGCTAAGACCTA
1 CACTGTTACTGTATTGGGCTAAGGCCTA
26073900 CACTG-TACTGT
1 CACTGTTACTGT
26073911 CACTGAATAG
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.06
28 124 0.93
29 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCTA
Found at i:26073873 original size:84 final size:84
Alignment explanation
Indices: 26073732--26073905 Score: 287
Period size: 84 Copynumber: 2.1 Consensus size: 84
26073722 TATTGCACTG
* * *
26073732 CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTCAGGCCTACATTGTTAC
1 CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCTACACTATTAC
*
26073797 TGTATTGGGCTAAGGCCTA
66 TGTATTGGGCTAAGACCTA
*
26073816 CACTGTTACTATATTGGGTTAAGGCCCACACTG-TTACTGTATTGGGCTAAGGCCTACACTATTA
1 CACTGTTACTATATTGGGCTAAGGCCCACACTGATT-CTGTATTGGGCTAAGGCCTACACTATTA
26073880 CTGTATTGGGCTAAGACCTA
65 CTGTATTGGGCTAAGACCTA
26073900 CACTGT
1 CACTGT
26073906 ACTGTCACTG
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
83 2 0.02
84 82 0.98
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (84 bp):
CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCTACACTATTAC
TGTATTGGGCTAAGACCTA
Found at i:26075336 original size:6 final size:7
Alignment explanation
Indices: 26075320--26075344 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26075310 AAAAGGAGAG
26075320 AAAATGA
1 AAAATGA
26075327 AAAATGA
1 AAAATGA
26075334 AAAATGA
1 AAAATGA
26075341 AAAA
1 AAAA
26075345 AAAATGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:26084565 original size:13 final size:13
Alignment explanation
Indices: 26084549--26084583 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26084539 AGCTTTTTTA
*
26084549 TTTTAATTTTAAT
1 TTTTCATTTTAAT
*
26084562 TTTTCATTATAAT
1 TTTTCATTTTAAT
26084575 TTTTCATTT
1 TTTTCATTT
26084584 GTTTGTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCATTTTAAT
Found at i:26087621 original size:6 final size:6
Alignment explanation
Indices: 26087520--26087606 Score: 129
Period size: 6 Copynumber: 14.5 Consensus size: 6
26087510 TATATTTATA
* * * * *
26087520 TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGCT TTTGCT TTTGCT
1 TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT
26087568 TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTT
1 TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTTGCT TTT
26087607 TTGCTTTTTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 80 1.00
ACGTcount: A:0.00, C:0.10, G:0.16, T:0.74
Consensus pattern (6 bp):
TTTGCT
Found at i:26088539 original size:5 final size:5
Alignment explanation
Indices: 26088529--26088553 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26088519 GAATTGCTGA
26088529 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
26088554 TTGTTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:26102062 original size:28 final size:29
Alignment explanation
Indices: 26102031--26102108 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
26102021 TATTATTATT
*
26102031 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
26102059 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
26102087 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
26102109 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:26102108 original size:31 final size:28
Alignment explanation
Indices: 26102042--26102109 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
26102032 ATATAAATAT
**
26102042 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
26102070 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
26102101 ATAAATTAA
1 ATAAATTAA
26102110 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:26102329 original size:11 final size:11
Alignment explanation
Indices: 26102313--26102338 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26102303 AGAAAGAGAC
26102313 GAAACAGGGGA
1 GAAACAGGGGA
26102324 GAAACAGGGGA
1 GAAACAGGGGA
26102335 GAAA
1 GAAA
26102339 GAAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:26103020 original size:3 final size:3
Alignment explanation
Indices: 26103000--26103035 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
26102990 GTGAGGTAAG
* *
26103000 TAT TAA TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26103036 GAGTGGGAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:26109528 original size:28 final size:29
Alignment explanation
Indices: 26109497--26109574 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
26109487 TATTATTATT
*
26109497 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
26109525 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
26109553 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
26109575 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:26109574 original size:31 final size:28
Alignment explanation
Indices: 26109508--26109575 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
26109498 ATATAAATAT
**
26109508 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
26109536 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
26109567 ATAAATTAA
1 ATAAATTAA
26109576 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:26109797 original size:11 final size:11
Alignment explanation
Indices: 26109781--26109806 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26109771 AGAAAGAGAC
26109781 GAAACAGGGGA
1 GAAACAGGGGA
26109792 GAAACAGGGGA
1 GAAACAGGGGA
26109803 GAAA
1 GAAA
26109807 GAAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:26113606 original size:42 final size:42
Alignment explanation
Indices: 26113560--26113643 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
26113550 GTCTCCTCAA
**
26113560 CCGTGCAACTCACTGAGATGCCGTACACGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
* * * *
26113602 CCGTGTAACTCTCTGAGCTGCCACACATGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
26113644 TCGTTTGCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.19
Consensus pattern (42 bp):
CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
Found at i:26118746 original size:25 final size:24
Alignment explanation
Indices: 26118699--26118748 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
26118689 TATCTAAATT
*
26118699 ATATTTTTAATAGATTTTTTATTA
1 ATATTTTTAAAAGATTTTTTATTA
*
26118723 ATATTTTCTAAAATATTTTTTATTA
1 ATATTTT-TAAAAGATTTTTTATTA
26118748 A
1 A
26118749 AAATTAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
ATATTTTTAAAAGATTTTTTATTA
Found at i:26121037 original size:33 final size:32
Alignment explanation
Indices: 26120933--26121048 Score: 151
Period size: 32 Copynumber: 3.6 Consensus size: 32
26120923 TAAATGAATA
* *
26120933 TTGTTATCATTTAACAAAATTAAAGTTGATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* *
26120965 TTGTTATCATTTTACAAAATTAAAGTTGTAAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* * *
26120997 TTATTATCATTTCACAAAATGAAAACTTGAAAT
1 TTGTTATCATTTCACAAAAT-TAAAGTTGAAAT
*
26121030 TTGTTATCATTTCATAAAA
1 TTGTTATCATTTCACAAAA
26121049 CCGCGCGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 47 0.64
33 26 0.36
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (32 bp):
TTGTTATCATTTCACAAAATTAAAGTTGAAAT
Found at i:26126914 original size:22 final size:19
Alignment explanation
Indices: 26126852--26126905 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
26126842 AATCTTCAAG
*
26126852 GATATGCAATCTTACATAT
1 GATATGCAATCTTAGATAT
*
26126871 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26126890 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26126906 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26126930 original size:22 final size:21
Alignment explanation
Indices: 26126867--26126931 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 21
26126857 GCAATCTTAC
26126867 ATATGATATGTAATCTT--AG
1 ATATGATATGTAATCTTAAAG
*
26126886 ATATGATATGCAATCTTAGAAG
1 ATATGATATGTAATCTTA-AAG
*
26126908 ATATGATTTTGTAATCTTAAAG
1 ATATGA-TATGTAATCTTAAAG
26126930 AT
1 AT
26126932 TTAATTTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
19 16 0.41
22 13 0.33
23 10 0.26
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (21 bp):
ATATGATATGTAATCTTAAAG
Found at i:26126941 original size:21 final size:23
Alignment explanation
Indices: 26126884--26126941 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
26126874 ATGTAATCTT
* *
26126884 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
26126906 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
26126928 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
26126942 GATATCTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 12 0.40
23 10 0.33
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:26134463 original size:46 final size:46
Alignment explanation
Indices: 26134370--26134467 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 46
26134360 TTTTCTAATT
* *
26134370 TTTGTGTGATTCAATGGATTGGGTTTATTTTGGGAGTGGATCGGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
* *
26134416 TTTGTGTGAGTCAGTGGATTGGGTTTATTTTGGGAGTAGG-TTAGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGT-GGATCAGTG
26134462 TTTGTG
1 TTTGTG
26134468 GCCTGGTTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
46 45 0.96
47 2 0.04
ACGTcount: A:0.14, C:0.03, G:0.38, T:0.45
Consensus pattern (46 bp):
TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
Found at i:26134767 original size:30 final size:30
Alignment explanation
Indices: 26134732--26134804 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
26134722 TTTTTAGTGG
*
26134732 CACACGGCCGTGTCACTAGCTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
26134762 CACACGGCCATGTCACTAACTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
26134792 CACATGGCCGTGT
1 CACACGGCCGTGT
26134805 GGCCAGATCG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (30 bp):
CACACGGCCGTGTCACTAACTCGTATGTGA
Found at i:26147487 original size:46 final size:46
Alignment explanation
Indices: 26147434--26147525 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
26147424 CCCAAATGCT
26147434 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
1 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
26147480 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
1 TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
26147526 CCCATTCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.28, G:0.09, T:0.22
Consensus pattern (46 bp):
TAGATACCTATCCCAACTTATAGCACATGATCACAAGACCCTAAAA
Found at i:26156848 original size:40 final size:39
Alignment explanation
Indices: 26156764--26156988 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
26156754 TTGAATGATG
* * * *
26156764 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26156804 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26156844 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
26156883 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
26156923 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
26156964 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26156989 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 36 0.22
40 114 0.70
41 12 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26157006 original size:80 final size:79
Alignment explanation
Indices: 26156803--26157011 Score: 221
Period size: 80 Copynumber: 2.6 Consensus size: 79
26156793 AAGTGACCAT
* ** * *
26156803 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCAT
26156866 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* ** * *
26156882 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATT
*
26156947 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* *
26156963 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
26157012 ATTCCGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 51 0.45
80 58 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:26157010 original size:119 final size:119
Alignment explanation
Indices: 26156764--26157021 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
26156754 TTGAATGATG
* *
26156764 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
26156829 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
26156883 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCAT
* * * *
26156946 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
26157003 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26157022 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 5 0.04
119 81 0.69
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:26164814 original size:40 final size:40
Alignment explanation
Indices: 26164730--26164954 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
26164720 TTGAATGATG
* * * *
26164730 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26164770 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26164810 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26164849 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26164889 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26164930 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26164955 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26164976 original size:119 final size:119
Alignment explanation
Indices: 26164730--26164987 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
26164720 TTGAATGATG
* *
26164730 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
26164795 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
26164849 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26164912 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
26164969 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26164988 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:26183819 original size:5 final size:5
Alignment explanation
Indices: 26183811--26183871 Score: 122
Period size: 5 Copynumber: 12.2 Consensus size: 5
26183801 TGATATGATT
26183811 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
26183861 TTATA TTATA T
1 TTATA TTATA T
26183872 ACAATCATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 56 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:26198695 original size:37 final size:37
Alignment explanation
Indices: 26198653--26198745 Score: 141
Period size: 37 Copynumber: 2.5 Consensus size: 37
26198643 TGTGATACGA
26198653 ATTTAGCCTGGACTAGTAATTTGTTGTCATTTTAAAG
1 ATTTAGCCTGGACTAGTAATTTGTTGTCATTTTAAAG
* * *
26198690 GTTTAGCCTGGTCCAGTAATTTGTTGTCATTTTAAAG
1 ATTTAGCCTGGACTAGTAATTTGTTGTCATTTTAAAG
* *
26198727 ATTTAGCTTGGACTGGTAA
1 ATTTAGCCTGGACTAGTAA
26198746 CGTTACATGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.42
Consensus pattern (37 bp):
ATTTAGCCTGGACTAGTAATTTGTTGTCATTTTAAAG
Found at i:26203095 original size:10 final size:10
Alignment explanation
Indices: 26203080--26203104 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26203070 CAAATCTAAC
26203080 ATTATGTAAA
1 ATTATGTAAA
26203090 ATTATGTAAA
1 ATTATGTAAA
26203100 ATTAT
1 ATTAT
26203105 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:26203147 original size:55 final size:55
Alignment explanation
Indices: 26203088--26203213 Score: 252
Period size: 55 Copynumber: 2.3 Consensus size: 55
26203078 ACATTATGTA
26203088 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
26203143 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
26203198 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
26203214 GGTTAGGGTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 71 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:26203242 original size:29 final size:29
Alignment explanation
Indices: 26203208--26203331 Score: 212
Period size: 29 Copynumber: 4.3 Consensus size: 29
26203198 AAATTATGTA
*
26203208 AAATTAGGTTAGGGTTAGGATTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
26203237 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
26203266 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
26203295 CAATTAGGTTAGGATTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
26203324 CAATTAGG
1 AAATTAGG
26203332 GTTTTTATTA
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.29, C:0.02, G:0.26, T:0.44
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:26203435 original size:71 final size:71
Alignment explanation
Indices: 26203337--26203521 Score: 325
Period size: 71 Copynumber: 2.6 Consensus size: 71
26203327 TTAGGGTTTT
*
26203337 TATTACATCAAATAGAACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTT
1 TATTACATCAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTT
26203402 CTATGCC
65 CTATGCC
* *
26203409 TATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAACAAATTTC
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
*
26203474 TATGCG
66 TATGCC
26203480 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
26203522 AATTTAAATA
Statistics
Matches: 108, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 95 0.88
72 13 0.12
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.37
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAATTTC
TATGCC
Found at i:26203443 original size:25 final size:25
Alignment explanation
Indices: 26203409--26203519 Score: 81
Period size: 25 Copynumber: 4.6 Consensus size: 25
26203399 TTTCTATGCC
*
26203409 TATTATATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
*
26203434 TATTACATCAAAT-AA-TATC-A--A
1 TATTACATCAAATAAACT-TCTATTT
* * * * * **
26203455 AATAAC-TCGAACAAATTTCTATGCG
1 TATTACATCAAATAAACTTCTAT-TT
26203480 TATTACATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
26203505 TATTACATCAAATAA
1 TATTACATCAAATAA
26203520 TAAATTTAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
20 4 0.06
21 8 0.12
22 2 0.03
23 2 0.03
24 4 0.06
25 31 0.48
26 13 0.20
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (25 bp):
TATTACATCAAATAAACTTCTATTT
Found at i:26203949 original size:18 final size:18
Alignment explanation
Indices: 26203922--26203956 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26203912 CGGAAAAGGA
* *
26203922 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
26203940 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
26203957 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:26205804 original size:49 final size:50
Alignment explanation
Indices: 26205739--26205871 Score: 207
Period size: 50 Copynumber: 2.7 Consensus size: 50
26205729 TCATTCGATA
* *
26205739 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTACAATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGTTTTACAACT
* *
26205788 CACGTAGTAGCTTTCACATAGTACTACACACGTGAACAAGTTTTACGACT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGTTTTACAACT
26205838 CACGTAGTAGCCTTCAC-TCAGTACTACACACGTG
1 CACGTAGTAGCCTTCACAT-AGTACTACACACGTG
26205872 CTCAAGCTTC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
49 36 0.47
50 41 0.53
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGTTTTACAACT
Found at i:26205854 original size:50 final size:50
Alignment explanation
Indices: 26205734--26206074 Score: 232
Period size: 51 Copynumber: 6.8 Consensus size: 50
26205724 TTTTATCATT
*
26205734 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
* * *
26205783 CAATTCACGTAGTAGCTTTCACATAGTACTACACACGTGAACAAGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
* *
26205833 CGACTCACGTAGTAGCCTTCAC-TCAGTACTACACACGTGCTCAAGCTTCTTA
1 CGATTCACGTAGTAGCCTTCACAT-AGTACTACACACGTGATCAAG-TT-TTA
* * * ** * * *
26205885 -G-TTCACATAATAGCCTTCACTTAGTACTACACATATAACCGTAG-TTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTA
** * * * * * * *
26205933 CCGAGACATGTGGTAGCATTCATACAGTACTAGACACGTGCTCAAAGCTTCTT-
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TT-TTA
* * * * * * *
26205986 -GGTGCACATAGTAGCCTTCACTTAGTACAACACATGTGA-CCA-TTACTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTT--TTA
* *
26206035 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
26206075 TTCATCGATA
Statistics
Matches: 218, Mismatches: 58, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
47 2 0.01
48 6 0.03
49 41 0.19
50 76 0.35
51 87 0.40
52 3 0.01
53 1 0.00
54 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
Found at i:26206051 original size:102 final size:101
Alignment explanation
Indices: 26205838--26206074 Score: 298
Period size: 102 Copynumber: 2.3 Consensus size: 101
26205828 TTTTACGACT
*
26205838 CACGTAGTAGCCTTCACT-CAGTACTACACACGTGCTCAAGCTTCTTAGTTCACATAATAGCCTT
1 CACGTAGTAGCCTTCA-TACAGTACTACACACGTGCTCAAGCTTCTTAGTGCACATAATAGCCTT
* *
26205902 CACTTAGTACTACACATATAACCGTAGTTTACCGAGA
65 CACTTAGTACAACACATATAACCGTAGCTTACCGAGA
* * * * * *
26205939 CATGTGGTAGCATTCATACAGTACTAGACACGTGCTCAAAGCTTCTTGGTGCACATAGTAGCCTT
1 CACGTAGTAGCCTTCATACAGTACTACACACGTGCTC-AAGCTTCTTAGTGCACATAATAGCCTT
* * * * *
26206004 CACTTAGTACAACACATGTGACCATTA-CTTATCGATA
65 CACTTAGTACAACACATATAACC-GTAGCTTACCGAGA
*
26206041 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCATACAGTACTACACACGTG
26206075 TTCATCGATA
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
100 1 0.01
101 31 0.27
102 80 0.70
103 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (101 bp):
CACGTAGTAGCCTTCATACAGTACTACACACGTGCTCAAGCTTCTTAGTGCACATAATAGCCTTC
ACTTAGTACAACACATATAACCGTAGCTTACCGAGA
Found at i:26207995 original size:25 final size:25
Alignment explanation
Indices: 26207961--26208011 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26207951 CCATTTTCAT
26207961 TTGCTCCACCGATATGTGATTCCTA
1 TTGCTCCACCGATATGTGATTCCTA
26207986 TTGCTCCACCGATATGTGATTCCTA
1 TTGCTCCACCGATATGTGATTCCTA
26208011 T
1 T
26208012 CAAGATGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (25 bp):
TTGCTCCACCGATATGTGATTCCTA
Found at i:26208075 original size:21 final size:20
Alignment explanation
Indices: 26208048--26208092 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
26208038 GATGAAAATA
*
26208048 TAAAAAAAT-TAAAATTATTT
1 TAAAAAAATATAAAA-AATTT
26208068 TAAAAAAATATAAAAAATTT
1 TAAAAAAATATAAAAAATTT
26208088 TAAAA
1 TAAAA
26208093 TTATTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAAAAAATATAAAAAATTT
Found at i:26208076 original size:30 final size:31
Alignment explanation
Indices: 26208042--26208105 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
26208032 GCCACTGATG
26208042 AAAATATAAAAAA-ATTAAAATTATTTTAAA
1 AAAATATAAAAAATATTAAAATTATTTTAAA
* *
26208072 AAAATATAAAAAATTTTAAAATTATTTTCAA
1 AAAATATAAAAAATATTAAAATTATTTTAAA
26208103 AAA
1 AAA
26208106 TGAAATTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATATAAAAAATATTAAAATTATTTTAAA
Found at i:26208162 original size:29 final size:29
Alignment explanation
Indices: 26208130--26208218 Score: 66
Period size: 29 Copynumber: 3.3 Consensus size: 29
26208120 AATTGAAATT
26208130 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
26208159 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* *
26208181 CAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
26208210 AAATTTGGA
1 AAATATGGA
26208219 AGGAAATTGA
Statistics
Matches: 40, Mismatches: 13, Indels: 14
0.60 0.19 0.21
Matches are distributed among these distances:
22 8 0.20
23 4 0.10
24 4 0.10
27 5 0.12
28 4 0.10
29 15 0.38
ACGTcount: A:0.39, C:0.01, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:26208162 original size:51 final size:51
Alignment explanation
Indices: 26208107--26208228 Score: 192
Period size: 51 Copynumber: 2.4 Consensus size: 51
26208097 TTTCAAAAAT
*
26208107 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
* *
26208158 GAAATTGAGAGGAAATTGAAATTCAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
26208209 GAAATTTG-GAAGGAAATTGA
1 GAAA-TTGAG-AGGAAATTGA
26208229 GAGGATTAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 53 0.80
52 13 0.20
ACGTcount: A:0.41, C:0.01, G:0.30, T:0.29
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:26208218 original size:12 final size:12
Alignment explanation
Indices: 26208201--26208226 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26208191 TTGAGAGAAT
26208201 TTTGGAAGGAAA
1 TTTGGAAGGAAA
26208213 TTTGGAAGGAAA
1 TTTGGAAGGAAA
26208225 TT
1 TT
26208227 GAGAGGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (12 bp):
TTTGGAAGGAAA
Found at i:26211903 original size:11 final size:11
Alignment explanation
Indices: 26211881--26211912 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
26211871 CTAAGCTCGA
26211881 AAATATTTTATT
1 AAATA-TTTATT
26211893 AAATATTTATT
1 AAATATTTATT
26211904 AAATATTTA
1 AAATATTTA
26211913 CGGAGTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AAATATTTATT
Found at i:26217114 original size:44 final size:43
Alignment explanation
Indices: 26217045--26217132 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
26217035 GGCGTTTATG
* *
26217045 TAAAAAAAGCCGCTATAAAACATGACTTTTAACTGCGCTTTTA
1 TAAAAAAAGCCGCTATAAAACATGACCTTTAACGGCGCTTTTA
* *
26217088 TAAAAAAACGCCGCTA-AAGAATATGACCTTTAGCGGCGCTTTTA
1 TAAAAAAA-GCCGCTATAA-AACATGACCTTTAACGGCGCTTTTA
26217132 T
1 T
26217133 CAAACACCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (43 bp):
TAAAAAAAGCCGCTATAAAACATGACCTTTAACGGCGCTTTTA
Found at i:26217443 original size:28 final size:28
Alignment explanation
Indices: 26217407--26217464 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
26217397 TTAGTTAATG
26217407 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
26217435 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
26217463 TT
1 TT
26217465 GATATGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.52, C:0.14, G:0.03, T:0.31
Consensus pattern (28 bp):
TTAAAAAACTAACTAATACAATAATGCT
Found at i:26220361 original size:53 final size:54
Alignment explanation
Indices: 26220281--26220385 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 54
26220271 CAACAGGATT
*
26220281 TCAAAACTTACATTATTTAGTTTCCTAGTTTA-GGGTAAAATTGAAGCTTGGCG
1 TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGGCG
**
26220334 TCAAAACTTACATTATTTAGTTTCCTAGTCTATTTGTAAAATTGAAGCTTGG
1 TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGG
26220386 GTCTAGGGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 31 0.65
54 17 0.35
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (54 bp):
TCAAAACTTACATTATTTAGTTTCCTAGTCTATGGGTAAAATTGAAGCTTGGCG
Found at i:26220974 original size:13 final size:14
Alignment explanation
Indices: 26220951--26220979 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26220941 AGAAATGGTT
26220951 TGGGAAAAATAAAA
1 TGGGAAAAATAAAA
26220965 TGGG-AAAATAAAA
1 TGGGAAAAATAAAA
26220978 TG
1 TG
26220980 AGATTTCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.17
Consensus pattern (14 bp):
TGGGAAAAATAAAA
Found at i:26221330 original size:19 final size:20
Alignment explanation
Indices: 26221286--26221329 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
26221276 TAAAATTATA
26221286 ATTTTTAGTTTTTGTATTTC
1 ATTTTTAGTTTTTGTATTTC
26221306 ATTTTTA-TTTTTGTATTTC
1 ATTTTTAGTTTTTGTATTTC
26221325 -TTTTT
1 ATTTTT
26221330 TTGTTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.21
19 12 0.50
20 7 0.29
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.75
Consensus pattern (20 bp):
ATTTTTAGTTTTTGTATTTC
Found at i:26221786 original size:7 final size:7
Alignment explanation
Indices: 26221771--26221906 Score: 71
Period size: 7 Copynumber: 19.3 Consensus size: 7
26221761 TTAACCCTTA
26221771 AAACC-T
1 AAACCAT
26221777 AAACCAT
1 AAACCAT
**
26221784 AAACCCC
1 AAACCAT
* *
26221791 AACCCTT
1 AAACCAT
26221798 AAACCAT
1 AAACCAT
*
26221805 AACCCAT
1 AAACCAT
*
26221812 AATCCAT
1 AAACCAT
26221819 AAACCCAT
1 AAA-CCAT
*
26221827 AATCCAT
1 AAACCAT
*
26221834 AAACCTT
1 AAACCAT
26221841 AAA--AT
1 AAACCAT
*
26221846 AGTAACTCTT
1 A--AAC-CAT
* *
26221856 AAAACTT
1 AAACCAT
*
26221863 AAACCCT
1 AAACCAT
26221870 AAACCAT
1 AAACCAT
* *
26221877 ATACCCT
1 AAACCAT
26221884 AAACCAT
1 AAACCAT
*
26221891 AAACCCT
1 AAACCAT
*
26221898 AAACTAT
1 AAACCAT
26221905 AA
1 AA
26221907 TGGACACTAA
Statistics
Matches: 97, Mismatches: 26, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
5 2 0.02
6 5 0.05
7 80 0.82
8 8 0.08
10 2 0.02
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.21
Consensus pattern (7 bp):
AAACCAT
Found at i:26221808 original size:14 final size:14
Alignment explanation
Indices: 26221748--26221906 Score: 74
Period size: 14 Copynumber: 11.2 Consensus size: 14
26221738 GCTAAACCCC
* * *
26221748 TAACACTTAACCCT
1 TAACCCTTAAACCA
26221762 TAACCCTTAAAACC-
1 TAACCCTT-AAACCA
* * *
26221776 TAAACCATAAACCC
1 TAACCCTTAAACCA
*
26221790 CAACCCTTAAACCA
1 TAACCCTTAAACCA
* *
26221804 TAACCCATAATCCA
1 TAACCCTTAAACCA
* *
26221818 TAAACCCATAATCCA
1 T-AACCCTTAAACCA
* **
26221833 TAAACCTTAAAATA
1 TAACCCTTAAACCA
* * *
26221847 GTAACTCTTAAAACT
1 -TAACCCTTAAACCA
26221862 TAAACCC-TAAACCA
1 T-AACCCTTAAACCA
26221876 TATACCC-TAAACCA
1 TA-ACCCTTAAACCA
*
26221890 TAAACCC-TAAACTA
1 T-AACCCTTAAACCA
26221904 TAA
1 TAA
26221907 TGGACACTAA
Statistics
Matches: 114, Mismatches: 24, Indels: 15
0.75 0.16 0.10
Matches are distributed among these distances:
13 8 0.07
14 73 0.64
15 33 0.29
ACGTcount: A:0.46, C:0.31, G:0.01, T:0.22
Consensus pattern (14 bp):
TAACCCTTAAACCA
Found at i:26221825 original size:15 final size:15
Alignment explanation
Indices: 26221791--26221838 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
26221781 CATAAACCCC
* *
26221791 AACCCTTAAACCAT-
1 AACCCATAATCCATA
26221805 AACCCATAATCCATA
1 AACCCATAATCCATA
26221820 AACCCATAATCCATA
1 AACCCATAATCCATA
26221835 AACC
1 AACC
26221839 TTAAAATAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:26222062 original size:14 final size:14
Alignment explanation
Indices: 26222045--26222098 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
26222035 CATAAAACAA
26222045 AAACCATAAACCTT
1 AAACCATAAACCTT
* *
26222059 AAACCCTTAACCCTT
1 AAA-CCATAAACCTT
* * *
26222074 AAATCACAACCCTT
1 AAACCATAAACCTT
26222088 AAACCATAAAC
1 AAACCATAAAC
26222099 AATAATCCTT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCATAAACCTT
Found at i:26222181 original size:40 final size:39
Alignment explanation
Indices: 26222121--26222453 Score: 172
Period size: 40 Copynumber: 8.6 Consensus size: 39
26222111 ATCATAAAGT
* *
26222121 TCGATCTATAACGGCATTTTTCAAGAGCTGCAGCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAGAGC-GCAGCTAATGC
* * *
26222161 TCGATCTATAGCGGCGTTTTTCAAGATGCGCCGTTAATAC
1 TCGATCTATAGCGGCGTTTTTCAAGA-GCGCAGCTAATGC
* * * *
26222201 TCGATCTATAGCTGCGTTTTTTAAAAACGCAGCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAGAGCGCAGCTAATGC
* * * **
26222240 -C-A-CTA-A--AGC-----TCAA-ACG-GTAGTGTTGTGC
1 TCGATCTATAGCGGCGTTTTTCAAGA-GCGCAG-CTAATGC
** * * * * * * *
26222268 TTAATTTTTTTGCGGTGTTTTTCAAAAAGCGCCGCTAATGG
1 TCGA-TCTATAGCGGCGTTTTTC-AAGAGCGCAGCTAATGC
* * * * *
26222309 TTGACCTATAGCGGCGCTTTTTCAAAAAGCACTGCTAATGC
1 TCGATCTATAGCGGCG-TTTTTC-AAGAGCGCAGCTAATGC
* * *
26222350 TCGATCTATAGCGACGTTTTTGAAGAAGCGCCGCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAG-AGCGCAGCTAATGC
*
26222390 TCGATCTATAGTGGCGTTTTTCAAGAAGCGTC-GCTAATGC
1 TCGATCTATAGCGGCGTTTTTCAAG-AGCG-CAGCTAATGC
*
26222430 TCGATCTATAGCGACGTTTTTCAA
1 TCGATCTATAGCGGCGTTTTTCAA
26222454 AAAACGCCGC
Statistics
Matches: 220, Mismatches: 52, Indels: 42
0.70 0.17 0.13
Matches are distributed among these distances:
27 4 0.02
28 7 0.03
30 1 0.00
32 1 0.00
33 2 0.01
35 2 0.01
36 3 0.01
37 1 0.00
38 1 0.00
39 11 0.05
40 138 0.63
41 46 0.21
42 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (39 bp):
TCGATCTATAGCGGCGTTTTTCAAGAGCGCAGCTAATGC
Found at i:26222465 original size:40 final size:40
Alignment explanation
Indices: 26222284--26222469 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
26222274 TTTTTGCGGT
* * * *
26222284 GTTTTTCAAAAAGCGCCGCTAATGGTTGACCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGAC
* *
26222324 GCTTTTTCAAAAAGCACTGCTAATGCTCGATCTATAGCGAC
1 G-TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGAC
* * * *
26222365 GTTTTTGAAGAAGCGCCGCTAATGCTCGATCTATAGTGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGAC
* *
26222405 GTTTTTCAAGAAGCGTCGCTAATGCTCGATCTATAGCGAC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGAC
*
26222445 GTTTTTCAAAAAACGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCGCTAATGC
26222470 CACTAAAGCT
Statistics
Matches: 126, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 92 0.73
41 34 0.27
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGAC
Found at i:26222564 original size:40 final size:40
Alignment explanation
Indices: 26222520--26222621 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
26222510 TTTTTGCTGT
* * * * *
26222520 GTTTTTTAAAAAGTGCTGCTAATGGTCGACCTATAACTAC
1 GTTTTTTAAAAAGCGCCGCTAATGCTCAACCTATAACGAC
* * *
26222560 GTTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGC
1 GTTTTTTAAAAAGCGCCGCTAATGCTCAACCTATAACGAC
26222600 GTTTTTTAAAAAGCGCCGCTAA
1 GTTTTTTAAAAAGCGCCGCTAA
26222622 AAATGTCGCA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (40 bp):
GTTTTTTAAAAAGCGCCGCTAATGCTCAACCTATAACGAC
Found at i:26233223 original size:6 final size:6
Alignment explanation
Indices: 26233212--26233258 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
26233202 GTCTCCCTGC
* * *
26233212 AAAATA AAAATA AAAATA AATAATA AGAA-A AAAATT AAAATT AAAAT
1 AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA AAAATA AAAAT
26233259 GTGTATTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 4 0.11
6 27 0.75
7 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:26242846 original size:41 final size:40
Alignment explanation
Indices: 26242775--26242872 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 40
26242765 TTTTCAAATA
*
26242775 CAACCTTTCCATTTGTTATCCTATATGGATAACTCCCTTTT
1 CAACCTTT-CATTTGTTATCCTATACGGATAACTCCCTTTT
* * *
26242816 CCACATTTTCATTTGTTATCC-ATTACGGATAACTTCCTTTT
1 CAAC-CTTTCATTTGTTATCCTA-TACGGATAACTCCCTTTT
26242857 CAACCTTTCATTTGTT
1 CAACCTTTCATTTGTT
26242873 CAGACATACC
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 12 0.24
41 34 0.69
42 3 0.06
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.46
Consensus pattern (40 bp):
CAACCTTTCATTTGTTATCCTATACGGATAACTCCCTTTT
Found at i:26244960 original size:29 final size:30
Alignment explanation
Indices: 26244917--26244998 Score: 103
Period size: 29 Copynumber: 2.7 Consensus size: 30
26244907 GAATTGGATC
*
26244917 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
*
26244947 AAATCAAAGTTCATGTATAGAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
26244978 AAACCATAGTTCATGTATAAA
1 AAATCAAAGTTCATGTATAAA
26244999 TCTGGTATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 22 0.49
30 5 0.11
31 18 0.40
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.30
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:26249021 original size:23 final size:23
Alignment explanation
Indices: 26248991--26249036 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26248981 CCTGAGATTG
26248991 TTTAACATCATTGTTATGACCCT
1 TTTAACATCATTGTTATGACCCT
26249014 TTTAACATCATTGTTATGACCCT
1 TTTAACATCATTGTTATGACCCT
26249037 GGCTATTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (23 bp):
TTTAACATCATTGTTATGACCCT
Found at i:26250940 original size:21 final size:21
Alignment explanation
Indices: 26250896--26250947 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
26250886 ACGGTAGCGA
* *
26250896 TGAGATTAGTTACTGTAGCAG
1 TGAGATTAGATACTGTAACAG
*
26250917 TGAGATTAGATACTGTAACGG
1 TGAGATTAGATACTGTAACAG
*
26250938 TGAAATTAGA
1 TGAGATTAGA
26250948 AACAATGGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (21 bp):
TGAGATTAGATACTGTAACAG
Found at i:26273043 original size:10 final size:10
Alignment explanation
Indices: 26273021--26273119 Score: 55
Period size: 10 Copynumber: 10.2 Consensus size: 10
26273011 GAAGAAATTC
26273021 AAATATTAT-A
1 AAAT-TTATAA
26273031 AAATTTATAA
1 AAATTTATAA
* *
26273041 AAAATTAAAA
1 AAATTTATAA
**
26273051 AAAGATATAA
1 AAATTTATAA
26273061 AAATTGTA-AA
1 AAATT-TATAA
26273071 AAA-TTAT-A
1 AAATTTATAA
* *
26273079 AAATATATAG
1 AAATTTATAA
*
26273089 AAATATA-AA
1 AAATTTATAA
* *
26273098 AAAATTATAG
1 AAATTTATAA
*
26273108 AATTTTATAA
1 AAATTTATAA
26273118 AA
1 AA
26273120 TTGAAAATTA
Statistics
Matches: 67, Mismatches: 16, Indels: 12
0.71 0.17 0.13
Matches are distributed among these distances:
8 6 0.09
9 14 0.21
10 45 0.67
11 2 0.03
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
AAATTTATAA
Found at i:26273059 original size:29 final size:29
Alignment explanation
Indices: 26273027--26273104 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
26273017 ATTCAAATAT
26273027 TATAAAATTTATAAAAAATTAAAAAAAGA
1 TATAAAATTTATAAAAAATTAAAAAAAGA
* * * *
26273056 TATAAAAATTGTAAAAAATT-ATAAAATA
1 TATAAAATTTATAAAAAATTAAAAAAAGA
*
26273084 TATAGAAATATA-AAAAAATTA
1 TATA-AAATTTATAAAAAATTA
26273105 TAGAATTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 18 0.45
29 22 0.55
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (29 bp):
TATAAAATTTATAAAAAATTAAAAAAAGA
Found at i:26273119 original size:19 final size:20
Alignment explanation
Indices: 26273021--26273119 Score: 55
Period size: 19 Copynumber: 5.1 Consensus size: 20
26273011 GAAGAAATTC
26273021 AAATATTATA-AAATTTATAA
1 AAATA-TATAGAAATTTATAA
* * **
26273041 AAA-ATTAAAAAAAGATATAA
1 AAATA-TATAGAAATTTATAA
* * *
26273061 AAAT-TGTAAAAAATTAT-A
1 AAATATATAGAAATTTATAA
* *
26273079 AAATATATAGAAATATAAAA
1 AAATATATAGAAATTTATAA
*
26273099 AAAT-TATAGAATTTTATAA
1 AAATATATAGAAATTTATAA
26273118 AA
1 AA
26273120 TTGAAAATTA
Statistics
Matches: 60, Mismatches: 15, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
18 5 0.08
19 36 0.60
20 19 0.32
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
AAATATATAGAAATTTATAA
Found at i:26273126 original size:28 final size:27
Alignment explanation
Indices: 26272954--26273126 Score: 90
Period size: 28 Copynumber: 6.1 Consensus size: 27
26272944 AAAAGTTAGA
26272954 AAAAAGAATTATAAAA-AT-TAAAATT-
1 AAAAA-AATTATAAAATATATAAAATTG
* *
26272979 AATAAAATT-TATAAATATTATTAAATCTG
1 AAAAAAATTATA-AAATA-TATAAAAT-TG
* *
26273008 AATGAAGAAA-T-TCAAATATTATAAAATTT
1 AA--AA-AAATTATAAAATA-TATAAAATTG
* *
26273037 ATAAAAAATTAAAAAAAGATATAAAAATTG
1 A-AAAAAATT-ATAAAATATAT-AAAATTG
*
26273067 TAAAAAATTATAAAATATATAGAAATAT-
1 AAAAAAATTATAAAATATATA-AAAT-TG
* *
26273095 AAAAAAATTATAGAATTTTATAAAATTG
1 AAAAAAATTATA-AAATATATAAAATTG
26273123 AAAA
1 AAAA
26273127 TTATATATAA
Statistics
Matches: 114, Mismatches: 16, Indels: 33
0.70 0.10 0.20
Matches are distributed among these distances:
23 2 0.02
24 7 0.06
25 5 0.04
26 1 0.01
27 10 0.09
28 36 0.32
29 23 0.20
30 24 0.21
31 3 0.03
32 3 0.03
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAAAAATTATAAAATATATAAAATTG
Found at i:26273645 original size:86 final size:84
Alignment explanation
Indices: 26273458--26273646 Score: 193
Period size: 86 Copynumber: 2.2 Consensus size: 84
26273448 AGAAGCAGGA
* *** * *
26273458 GCTTAGTTGTTTTTTTGAAGTTTTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTTAAGTGTCCA
1 GCTTAATTG-TTTTTTGAAGAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTGTCCA
* * *
26273523 ATTGAGTAAAAAAAGCGGGG
65 ATTAAGTAAAAAAAACGGAG
*
26273543 GTTTAATTGCTTTTTTTGAAGAAGTTTAAGGGTCTTTTTGAT-CTATTTTGAAAGTTCAAGTG-C
1 GCTTAATTG--TTTTTTGAAGAAGTTTAAGGGTCTTTTTGATGC-ATTTTGAAAGTTCAAGTGTC
*
26273606 TCAATTAAATGTAAAAAAAATGAGAG
63 -CAATT-AA-GTAAAAAAAACG-GAG
26273632 GCTTAATTGTTTTTT
1 GCTTAATTGTTTTTT
26273647 TTTTTAAAAT
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
85 9 0.10
86 50 0.58
87 7 0.08
88 10 0.12
89 10 0.12
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (84 bp):
GCTTAATTGTTTTTTGAAGAAGTTTAAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTGTCCAA
TTAAGTAAAAAAAACGGAG
Found at i:26274906 original size:41 final size:41
Alignment explanation
Indices: 26274861--26274945 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
26274851 ATTTAATATG
26274861 TCACGTCAATTTATCGTTGCACTATTAACGGTAATTAACGC
1 TCACGTCAATTTATCGTTGCACTATTAACGGTAATTAACGC
26274902 TCACGTCAATTTATCGTTGCACTATTAACGGTAATTAACGC
1 TCACGTCAATTTATCGTTGCACTATTAACGGTAATTAACGC
26274943 TCA
1 TCA
26274946 GTGATTAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (41 bp):
TCACGTCAATTTATCGTTGCACTATTAACGGTAATTAACGC
Found at i:26279277 original size:45 final size:45
Alignment explanation
Indices: 26279228--26279483 Score: 282
Period size: 45 Copynumber: 5.7 Consensus size: 45
26279218 CTCGCAAAAA
* * *
26279228 AAGATTCATAGATATGGTGAACTCATACATGCGGTTTCATGGTAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
** * * *
26279273 AAGATTCAT-GAATATGGCAAACTCGTATATGCGGATTCAT-GTAG
1 AAGATTCATAG-ATATGGTGAACTCATACATGCGGATTCATAGAAG
** * *
26279317 AAGATTCATAGATATGACGAACTCATACATGTGGATTCATAGCAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
* * *
26279362 AAGATTTATAGATATGGTGGACTCATACATGCGGATTCATAGAAA
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
** * * *
26279407 AAGATTCATAGATATAATGGACTCATACATGCGGAGTCATAAAAG
1 AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
* * *
26279452 AAGATTCATAAATATGGTGGACTAATACATGC
1 AAGATTCATAGATATGGTGAACTCATACATGC
26279484 AAACTGTGTC
Statistics
Matches: 180, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
44 38 0.21
45 142 0.79
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (45 bp):
AAGATTCATAGATATGGTGAACTCATACATGCGGATTCATAGAAG
Found at i:26279346 original size:89 final size:89
Alignment explanation
Indices: 26279225--26279468 Score: 283
Period size: 89 Copynumber: 2.7 Consensus size: 89
26279215 GAACTCGCAA
* * * *
26279225 AAAAAGATTCATAGATATGGTGAACTCATACATGCGGTTTCATGGTAGAAGATTCATGAATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCAT-AATATGG
* *
26279290 CAAACTCGTATATGCGGATTCAT-G
65 CAAACTCATACATGCGGATTCATAG
* * * * * *
26279314 TAGAAGATTCATAGATATGACGAACTCATACATGTGGATTCATAGCAGAAGATTTATAGATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCATA-ATATGG
***
26279379 TGGACTCATACATGCGGATTCATAG
65 CAAACTCATACATGCGGATTCATAG
* * * *
26279404 AAAAAGATTCATAGATATAATGGACTCATACATGCGGAGTCATAAAAGAAGATTCATAAATATGG
1 AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCAT-AATATGG
26279469 TGGACTAATA
Statistics
Matches: 128, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
88 1 0.01
89 72 0.56
90 54 0.42
91 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (89 bp):
AAAAAGATTCATAGATATGATGAACTCATACATGCGGATTCATAGAAGAAGATTCATAATATGGC
AAACTCATACATGCGGATTCATAG
Found at i:26284380 original size:11 final size:12
Alignment explanation
Indices: 26284359--26284397 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26284349 AATAGAGGAC
*
26284359 TAAATTGAAATT
1 TAAAGTGAAATT
26284371 TAAA-TGAAATT
1 TAAAGTGAAATT
*
26284382 TAAAGTGAAAAT
1 TAAAGTGAAATT
26284394 TAAA
1 TAAA
26284398 AAAAAGAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.33
Consensus pattern (12 bp):
TAAAGTGAAATT
Done.