Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68668488
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1920000 characters in sequence are not A, C, G, or T
File 94 of 230
Found at i:26285572 original size:23 final size:23
Alignment explanation
Indices: 26285543--26285587 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
26285533 TTGGGCTTCT
26285543 GGGTAGTTTAGGTAATTGGGCTA
1 GGGTAGTTTAGGTAATTGGGCTA
26285566 GGGTAGTTTAGGTAATTGGGCT
1 GGGTAGTTTAGGTAATTGGGCT
26285588 TGTAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.04, G:0.40, T:0.36
Consensus pattern (23 bp):
GGGTAGTTTAGGTAATTGGGCTA
Found at i:26294506 original size:25 final size:25
Alignment explanation
Indices: 26294478--26294537 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
26294468 ATAAGAGAAA
* * *
26294478 AAGAAGAATAAGAGAAGAAATGGAG
1 AAGAAGAAGAAAAGAAGAAAAGGAG
*
26294503 AAGAAAAAGAAAAGAAGAAAAGGAG
1 AAGAAGAAGAAAAGAAGAAAAGGAG
*
26294528 GAGAAGAAGA
1 AAGAAGAAGA
26294538 GAAAATGGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (25 bp):
AAGAAGAAGAAAAGAAGAAAAGGAG
Found at i:26294521 original size:17 final size:18
Alignment explanation
Indices: 26294462--26294521 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 18
26294452 TTTGGGCAGT
* *
26294462 AGAAGAATAAGAGA-AAA
1 AGAAGAAGAAGAAAGAAA
*
26294479 AGAAGAATAAGAGAAGAAA
1 AGAAGAAGAAGA-AAGAAA
* *
26294498 TGGAGAAGAA-AAAGAAA
1 AGAAGAAGAAGAAAGAAA
26294515 AGAAGAA
1 AGAAGAA
26294522 AAGGAGGAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 23 0.66
18 2 0.06
19 10 0.29
ACGTcount: A:0.68, C:0.00, G:0.27, T:0.05
Consensus pattern (18 bp):
AGAAGAAGAAGAAAGAAA
Found at i:26295567 original size:3 final size:3
Alignment explanation
Indices: 26295559--26295586 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26295549 CCATTTTCCT
26295559 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26295587 CCATTTGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:26300059 original size:20 final size:20
Alignment explanation
Indices: 26300034--26300072 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26300024 ATGCATACCC
*
26300034 CCTTTGTTGCTTTATCCCAG
1 CCTTTGTTGCTTCATCCCAG
26300054 CCTTTGTTGCTTCATCCCA
1 CCTTTGTTGCTTCATCCCA
26300073 ATTACTACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.33, G:0.13, T:0.44
Consensus pattern (20 bp):
CCTTTGTTGCTTCATCCCAG
Found at i:26308771 original size:47 final size:46
Alignment explanation
Indices: 26308719--26308879 Score: 124
Period size: 47 Copynumber: 3.1 Consensus size: 46
26308709 AGAATATTTA
26308719 ATTTTATTAAAGTATATATTTTTGTTAAATTATATTTAATAATAATT
1 ATTTTATTAAA-TATATATTTTTGTTAAATTATATTTAATAATAATT
* * * **
26308766 ATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGA
1 ATTTTAT--TA--A-ATA-TAT-ATTTTTGTTAA---AT-T----ATATTTAATAATAATT
26308827 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATT
1 ATTTTATTAAA-TATATATTTTTGTTAAATTATATTTAATAATAATT
26308874 ATTTTA
1 ATTTTA
26308880 AATTATATTT
Statistics
Matches: 88, Mismatches: 10, Indels: 32
0.68 0.08 0.25
Matches are distributed among these distances:
47 26 0.30
49 2 0.02
51 4 0.05
52 6 0.07
53 9 0.10
55 9 0.10
56 6 0.07
57 4 0.05
59 2 0.02
61 20 0.23
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (46 bp):
ATTTTATTAAATATATATTTTTGTTAAATTATATTTAATAATAATT
Found at i:26308820 original size:61 final size:59
Alignment explanation
Indices: 26308750--26308927 Score: 150
Period size: 61 Copynumber: 2.9 Consensus size: 59
26308740 TTGTTAAATT
*
26308750 ATATTTAATAATAATTATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAA-TATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
26308811 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAA-TATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * *
26308871 ATTATTTTA-AATTATATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
26308928 TTTTATCAAA
Statistics
Matches: 92, Mismatches: 15, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 17 0.18
61 43 0.47
62 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (59 bp):
ATATTTAATAATAATATTTTATATATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:26308880 original size:26 final size:25
Alignment explanation
Indices: 26308842--26308900 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
26308832 ATTAAATTAT
*
26308842 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
26308868 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
26308894 ATATTAT
1 ATATTAT
26308901 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:26308899 original size:15 final size:15
Alignment explanation
Indices: 26308855--26308910 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
26308845 TTTTTGTTAA
*
26308855 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
26308870 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
26308881 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
26308896 ATTATATATTATAAT
1 ATTATATTTTATAAT
26308911 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:26308926 original size:24 final size:22
Alignment explanation
Indices: 26308881--26308949 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
26308871 ATTATTTTAA
26308881 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
26308903 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
26308922 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
26308944 ATTATA
1 ATTATA
26308950 AAAAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:26308945 original size:17 final size:17
Alignment explanation
Indices: 26308827--26308966 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
26308817 AATACTAAGA
*
26308827 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
26308844 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
26308860 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
26308874 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
26308893 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
26308909 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
26308927 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
*
26308944 ATTATAA-AAA--ATAT
1 ATTTTAATAAATTATAT
26308958 A-TTTAATAA
1 ATTTTAATAA
26308967 TAATTATGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 33
0.67 0.09 0.23
Matches are distributed among these distances:
13 6 0.06
14 13 0.14
15 8 0.08
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:26309215 original size:16 final size:16
Alignment explanation
Indices: 26309194--26309261 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
26309184 GATTTGCTAT
26309194 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
26309210 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
26309226 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26309242 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26309258 TACA
1 TACA
26309262 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26324758 original size:29 final size:30
Alignment explanation
Indices: 26324726--26324786 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
26324716 AAAACCTTTT
*
26324726 ATTTTT-CCTCAAAATTTTTACTCCC-TCCC
1 ATTTTTCCCT-AAAACTTTTACTCCCTTCCC
*
26324755 ATTTTTCCCTAAAACTTTTATTCCCTTCCC
1 ATTTTTCCCTAAAACTTTTACTCCCTTCCC
26324785 AT
1 AT
26324787 CCCACCTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.46
Consensus pattern (30 bp):
ATTTTTCCCTAAAACTTTTACTCCCTTCCC
Found at i:26331297 original size:50 final size:50
Alignment explanation
Indices: 26331222--26331321 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26331212 TTTGAAGGTA
26331222 ATTGGGAAAACTTTCTACCTTTAGCCGAATTCGCTTATAATAAAATTTAT
1 ATTGGGAAAACTTTCTACCTTTAGCCGAATTCGCTTATAATAAAATTTAT
26331272 ATTGGGAAAACTTTCTACCTTTAGCCGAATTCGCTTATAATAAAATTTAT
1 ATTGGGAAAACTTTCTACCTTTAGCCGAATTCGCTTATAATAAAATTTAT
26331322 CAGAAAAGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (50 bp):
ATTGGGAAAACTTTCTACCTTTAGCCGAATTCGCTTATAATAAAATTTAT
Found at i:26332771 original size:31 final size:30
Alignment explanation
Indices: 26332736--26332795 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26332726 GGAGGTGGGA
*
26332736 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
26332767 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
26332796 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:26333019 original size:9 final size:9
Alignment explanation
Indices: 26333005--26333041 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26332995 TATAGTTTGA
26333005 TATTCGAAT
1 TATTCGAAT
26333014 TATTCGAAT
1 TATTCGAAT
*
26333023 TATTCGAGT
1 TATTCGAAT
26333032 TATTCGAAT
1 TATTCGAAT
26333041 T
1 T
26333042 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26333112 original size:9 final size:9
Alignment explanation
Indices: 26333095--26333125 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26333085 TCGAGTTGAT
26333095 TCGAATAAC
1 TCGAATAAC
*
26333104 TCGATTAAC
1 TCGAATAAC
26333113 TCGAATAAC
1 TCGAATAAC
26333122 TCGA
1 TCGA
26333126 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:26336925 original size:45 final size:45
Alignment explanation
Indices: 26336876--26337090 Score: 279
Period size: 45 Copynumber: 4.8 Consensus size: 45
26336866 ATCAAACGGT
* *
26336876 TAAGACAATAGTTGAAAGACACTATGGCACTGTACC-AGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGA-AAATGAA
** * * *
26336921 TAAGACCATAGTTGAAAGACACTACAGAAATATACCGAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* *
26336966 TAAGACCATAGTTGAAAGGCATTATGGCACTATACCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* * * *
26337011 TAAGACCATAGATGAATGACACTATGGCACTACATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
* *
26337056 TGAGACCATAGTTGAAAGACACTATGGCATTATAC
1 TAAGACCATAGTTGAAAGACACTATGGCACTATAC
26337091 TTGTAACAGC
Statistics
Matches: 143, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
45 142 0.99
46 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCGAAAATGAA
Found at i:26337967 original size:35 final size:35
Alignment explanation
Indices: 26337928--26338000 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
26337918 GGACTATCTT
*
26337928 TTATGAGCATTGATGTGTTTTGGAGGGATTGGCTC
1 TTATGAGCATTGATGTGTTTCGGAGGGATTGGCTC
* *
26337963 TTATGAGCATTGGTGTGTTTCGGATGGATTGGCTC
1 TTATGAGCATTGATGTGTTTCGGAGGGATTGGCTC
26337998 TTA
1 TTA
26338001 CAAGCATCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.10, G:0.33, T:0.41
Consensus pattern (35 bp):
TTATGAGCATTGATGTGTTTCGGAGGGATTGGCTC
Found at i:26338007 original size:35 final size:35
Alignment explanation
Indices: 26337933--26338018 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
26337923 ATCTTTTATG
* * **
26337933 AGCATTGATGTGTTTTGGAGGGATTGGCTCTTATG
1 AGCATTGGTGTGTTTCGGAGGGATTGGCTCTTACA
*
26337968 AGCATTGGTGTGTTTCGGATGGATTGGCTCTTACA
1 AGCATTGGTGTGTTTCGGAGGGATTGGCTCTTACA
*
26338003 AGCATCTCGTGTGTTT
1 AGCAT-TGGTGTGTTT
26338019 GGGGGCTTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 35 0.80
36 9 0.20
ACGTcount: A:0.16, C:0.13, G:0.31, T:0.40
Consensus pattern (35 bp):
AGCATTGGTGTGTTTCGGAGGGATTGGCTCTTACA
Found at i:26343779 original size:21 final size:21
Alignment explanation
Indices: 26343733--26343780 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
26343723 GTGACAGGGG
26343733 TACACGACTGTGTGGCTAAGA
1 TACACGACTGTGTGGCTAAGA
* * *
26343754 GACACGACCT-TGTGGTTGAGA
1 TACACGA-CTGTGTGGCTAAGA
26343775 TACACG
1 TACACG
26343781 GTCGTATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (21 bp):
TACACGACTGTGTGGCTAAGA
Found at i:26347422 original size:21 final size:21
Alignment explanation
Indices: 26347375--26347423 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
26347365 TGGTACACAT
* *
26347375 TCGTATGGCTCAGAGACATGG
1 TCGTGTGGCTCAGAGACACGG
* *
26347396 TCGTGTGGCTGAGATACACGG
1 TCGTGTGGCTCAGAGACACGG
*
26347417 TGGTGTG
1 TCGTGTG
26347424 ACCAAATTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.16, G:0.39, T:0.27
Consensus pattern (21 bp):
TCGTGTGGCTCAGAGACACGG
Found at i:26355961 original size:18 final size:20
Alignment explanation
Indices: 26355926--26355966 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
26355916 ACCATGATTT
26355926 GTTAGATAATGATGTGAT-G
1 GTTAGATAATGATGTGATAG
* *
26355945 GTTAGA-AATGTTTTGATAG
1 GTTAGATAATGATGTGATAG
26355964 GTT
1 GTT
26355967 TATTACTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.41
Consensus pattern (20 bp):
GTTAGATAATGATGTGATAG
Found at i:26357422 original size:17 final size:18
Alignment explanation
Indices: 26357390--26357424 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
26357380 ATCAAATGAA
26357390 AAAAATGGATAGAAATGGT
1 AAAAATGGA-AGAAATGGT
26357409 AAAAATGG-AGAAATGG
1 AAAAATGGAAGAAATGG
26357425 GAAACATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (18 bp):
AAAAATGGAAGAAATGGT
Found at i:26371085 original size:17 final size:17
Alignment explanation
Indices: 26371063--26371096 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26371053 TTTTGCCGTG
26371063 TGGG-CCACATTGGCATA
1 TGGGCCCACA-TGGCATA
26371080 TGGGCCCACATGGCATA
1 TGGGCCCACATGGCATA
26371097 CAACATGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (17 bp):
TGGGCCCACATGGCATA
Found at i:26371260 original size:4 final size:4
Alignment explanation
Indices: 26371253--26371329 Score: 127
Period size: 4 Copynumber: 19.2 Consensus size: 4
26371243 ATGTGATAGA
* *
26371253 TATG TATG TATG TATG TATG TATT TATG TATG TATG TATG TATG TATT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
26371301 TATG TATG TATT TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
26371330 TGAGCATGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 67 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.55
Consensus pattern (4 bp):
TATG
Found at i:26376745 original size:40 final size:40
Alignment explanation
Indices: 26376507--26376731 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
26376497 TTGAATGATG
* * * *
26376507 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26376547 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26376587 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26376626 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26376666 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26376707 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26376732 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26376753 original size:119 final size:119
Alignment explanation
Indices: 26376507--26376764 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
26376497 TTGAATGATG
* *
26376507 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
26376572 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* * * **
26376626 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
26376689 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAAA
* *
26376746 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26376765 TATGCGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:26384756 original size:40 final size:40
Alignment explanation
Indices: 26384518--26384742 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
26384508 TTGAATGATG
* * * *
26384518 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26384558 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26384598 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26384637 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26384677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26384718 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26384743 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26384764 original size:119 final size:119
Alignment explanation
Indices: 26384518--26384775 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
26384508 TTGAATGATG
* *
26384518 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
26384583 GTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAAA
* * * **
26384637 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26384700 TTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTA-AATCCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-CTAAA
* *
26384757 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26384776 TATGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 1 0.01
119 84 0.71
120 33 0.28
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAAA
Found at i:26386213 original size:20 final size:20
Alignment explanation
Indices: 26386186--26386238 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
26386176 GCTTGTATAG
*
26386186 GATTGCACTTTGGTGCCCCT
1 GATTGCACTTTGATGCCCCT
* * *
26386206 GTTTGCACTTCGATGCCTCT
1 GATTGCACTTTGATGCCCCT
26386226 GATTGCACATTTG
1 GATTGCAC-TTTG
26386239 TTCCTCTATC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.38
Consensus pattern (20 bp):
GATTGCACTTTGATGCCCCT
Found at i:26386914 original size:20 final size:21
Alignment explanation
Indices: 26386889--26386931 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
26386879 AATTGTCAGG
26386889 TTTAGAAAATTTAATCCT-TT
1 TTTAGAAAATTTAATCCTATT
26386909 TTTAGAAAATTTAATCCTATT
1 TTTAGAAAATTTAATCCTATT
26386930 TT
1 TT
26386932 CATTTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTAGAAAATTTAATCCTATT
Found at i:26388045 original size:26 final size:26
Alignment explanation
Indices: 26388016--26388066 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26388006 ATGATTTTTC
*
26388016 TGTTAATGAAATGAATATTTGAATGT
1 TGTTAATGAAATGAATAATTGAATGT
* *
26388042 TGTTATTGAAATTAATAATTGAATG
1 TGTTAATGAAATGAATAATTGAATG
26388067 GACTAGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (26 bp):
TGTTAATGAAATGAATAATTGAATGT
Found at i:26389617 original size:37 final size:37
Alignment explanation
Indices: 26389567--26389645 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26389557 TTATTACGAA
* *
26389567 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
26389604 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
26389641 GTCTT
1 GTCTT
26389646 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:26389842 original size:47 final size:47
Alignment explanation
Indices: 26389764--26390472 Score: 1130
Period size: 47 Copynumber: 15.0 Consensus size: 47
26389754 CCCTTCGGGA
* * * * * * *
26389764 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
26389811 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26389858 CTTATCACATATATACACTTTCACATGCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26389905 CTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26389952 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26389999 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26390048 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26390095 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26390142 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26390189 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26390236 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26390283 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26390330 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26390379 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26390426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26390473 TTTACTATCA
Statistics
Matches: 627, Mismatches: 31, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 537 0.86
49 90 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26390085 original size:190 final size:188
Alignment explanation
Indices: 26389764--26390472 Score: 1139
Period size: 190 Copynumber: 3.8 Consensus size: 188
26389754 CCCTTCGGGA
** * * * * * * ***
26389764 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
26389829 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATGCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
26389894 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
26389952 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
26390017 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
26390082 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
26390142 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGTCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
26390207 TTTCACATTCATCACATCGGCTATTAGTCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* * *
26390272 GGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
26390330 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26390395 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26390460 TCGGCCATTAGGC
129 TCGGCCATTAGGC
26390473 TTTACTATCA
Statistics
Matches: 485, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
188 180 0.37
190 305 0.63
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:26390366 original size:331 final size:331
Alignment explanation
Indices: 26389764--26390472 Score: 1202
Period size: 331 Copynumber: 2.1 Consensus size: 331
26389754 CCCTTCGGGA
* * * * * * * * *
26389764 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCCATCACACATATACAC
*
26389829 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATGCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATGCATCACATC
* *
26389894 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCA
*
26389959 CACATATACACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCA
196 CACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
* *
26390024 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTA
261 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
26390089 TTAGGC
326 TTAGGC
* **
26390095 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCCATCACACATATACAC
* * *
26390160 TTTCACATTCATCACATCGGCTATTAGTCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATGCATCACATC
* * *
26390225 GGCTATTAGTCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCA
26390290 CACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
196 CACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
26390355 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
261 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
26390420 TTAGGC
326 TTAGGC
26390426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26390473 TTTACTATCA
Statistics
Matches: 353, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
331 353 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (331 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCCATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATGCATCACATC
GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCA
CACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
TTAGGC
Found at i:26395252 original size:51 final size:51
Alignment explanation
Indices: 26395191--26395292 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
26395181 ACGTCGGTTG
* *
26395191 ACAATGAGTCACGTTGCGACATCAAGTGGCCTGAGGTCACGACGTGACATA
1 ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
*
26395242 ACAATAAGTCACGTTACGACATCGAGTGGCCTGAGGTCACGACGTGACATA
1 ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
26395293 CTTTTATGGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (51 bp):
ACAATAAGTCACGTTACGACATCAAGTGGCCTGAGGTCACGACGTGACATA
Found at i:26398382 original size:20 final size:20
Alignment explanation
Indices: 26398354--26398395 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
26398344 GACTCATTCG
26398354 CATTAATATTTTCATCAAGT
1 CATTAATATTTTCATCAAGT
*
26398374 CATTCATATTTTCATCAAGT
1 CATTAATATTTTCATCAAGT
26398394 CA
1 CA
26398396 AAATATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (20 bp):
CATTAATATTTTCATCAAGT
Found at i:26402033 original size:27 final size:26
Alignment explanation
Indices: 26402003--26402187 Score: 178
Period size: 27 Copynumber: 6.9 Consensus size: 26
26401993 AAAATGACCA
*
26402003 AAATACCCTCGAAGGGTAAAATAACTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
* *
26402030 AAATATCCTCGAATGGTAAAATGATTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
* * *
26402057 AAATACCCTCAAAGTGTAAAATGATCA
1 AAATACCCTCGAAGGGTAAAATGAT-G
*
26402084 AAATACACTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGA-TG
*
26402111 AAATACCCCCGAA-GGTAAAATGATCG
1 AAATACCCTCGAAGGGTAAAATGAT-G
*
26402137 AAATACCC-CTGAAAGGTAAAATGATCG
1 AAATACCCTC-GAAGGGTAAAATGAT-G
* *
26402164 AAATA-CCTCCATTGGGTAAAATGA
1 AAATACCCTCGA-AGGGTAAAATGA
26402188 CTGTTATACC
Statistics
Matches: 133, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.02
26 26 0.20
27 104 0.78
28 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (26 bp):
AAATACCCTCGAAGGGTAAAATGATG
Found at i:26402168 original size:80 final size:80
Alignment explanation
Indices: 26401992--26402199 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 80
26401982 CGATTCATGA
* * * * *
26401992 TAAAATGACCAAAATACCCTCGAAGGGTAAAATAACTGAAATATCCTCGAATGGTAAAATGATTG
1 TAAAATGATCAAAATA-CCTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCG
26402057 AAATACCCTCAAAGTG
65 AAATACCCTCAAAGTG
26402073 TAAAATGATCAAAATACACTCGAAGGGTAAAATGACTGAAATACCCCCGAA-GGTAAAATGATCG
1 TAAAATGATCAAAATAC-CTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCG
*
26402137 AAATACCCCTGAAAG-G
65 AAATA-CCCTCAAAGTG
* * * **
26402153 TAAAATGATCGAAATACCTCCATTGGGTAAAATGACTGTTATACCCC
1 TAAAATGATCAAAATACCTCGA-AGGGTAAAATGACTGAAATACCCC
26402200 TAGGAGTTGA
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
79 4 0.04
80 56 0.50
81 53 0.47
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.22
Consensus pattern (80 bp):
TAAAATGATCAAAATACCTCGAAGGGTAAAATGACTGAAATACCCCCGAATGGTAAAATGATCGA
AATACCCTCAAAGTG
Found at i:26402405 original size:26 final size:26
Alignment explanation
Indices: 26402369--26402430 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
26402359 CATATAGCAT
* * *
26402369 CTTTTCTGCGTTAATGTTACTGGAAG
1 CTTTGCTGCGTCAATATTACTGGAAG
* * *
26402395 CTTTGTTGCGTCACTATTACTGGCAG
1 CTTTGCTGCGTCAATATTACTGGAAG
26402421 CTTTGCTGCG
1 CTTTGCTGCG
26402431 ATATTGGTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.40
Consensus pattern (26 bp):
CTTTGCTGCGTCAATATTACTGGAAG
Found at i:26402575 original size:30 final size:31
Alignment explanation
Indices: 26402535--26402596 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
26402525 TACTGCATTG
* *
26402535 CACTGATTACTGTACTGGGCTAAGGCCCACA
1 CACTGATTACTCTAATGGGCTAAGGCCCACA
26402566 CACTG-TTACTCTAATGGGCTAAGGCCCACA
1 CACTGATTACTCTAATGGGCTAAGGCCCACA
26402596 C
1 C
26402597 TGTACTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.23
Consensus pattern (31 bp):
CACTGATTACTCTAATGGGCTAAGGCCCACA
Found at i:26404861 original size:35 final size:35
Alignment explanation
Indices: 26404766--26404861 Score: 156
Period size: 35 Copynumber: 2.7 Consensus size: 35
26404756 AATTTTTGTA
* * *
26404766 GGCATGCTTTACATGCGAATCAAAACCAGTATAAT
1 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
26404801 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
1 GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
*
26404836 GGCATGCTTAACATGCGAATTAGAAT
1 GGCATGCTTAACATGCGAATCAGAAT
26404862 ATCAACAGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (35 bp):
GGCATGCTTAACATGCGAATCAGAATCAGTATAAT
Found at i:26407921 original size:22 final size:22
Alignment explanation
Indices: 26407893--26407938 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
26407883 TCAATTATCC
*
26407893 ATAATAATAATAAACAAATAAA
1 ATAATAATAATAAACAAACAAA
* *
26407915 ATAATAATGATAACCAAACAAA
1 ATAATAATAATAAACAAACAAA
26407937 AT
1 AT
26407939 TCGAAACCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.22
Consensus pattern (22 bp):
ATAATAATAATAAACAAACAAA
Found at i:26415852 original size:23 final size:23
Alignment explanation
Indices: 26415820--26415897 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
26415810 TTCTCTTTTC
26415820 TTTTTC-TATATTTGATTCTCTA
1 TTTTTCATATATTTGATTCTCTA
26415842 TTTTTCATATATGTT-ATTCTCT-
1 TTTTTCATATAT-TTGATTCTCTA
* *
26415864 TTCCTTTCCTATATTTGATTATCTA
1 TT--TTTCATATATTTGATTCTCTA
*
26415889 TTTTCCATA
1 TTTTTCATA
26415898 AAATATTCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
22 8 0.17
23 19 0.41
24 17 0.37
25 2 0.04
ACGTcount: A:0.19, C:0.17, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTTTCATATATTTGATTCTCTA
Found at i:26415879 original size:47 final size:48
Alignment explanation
Indices: 26415795--26415897 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
26415785 AGAATACATA
* * * *
26415795 TTTCCATATCTGTTATTCTCTTTTCTTTTTCTATATTTGATTCTCTAT
1 TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
*
26415843 TTTTCATATATGTTATTCTC-TTTCCTTTCCTATATTTGATTATCTAT
1 TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
26415890 TTTCCATA
1 TTTCCATA
26415898 AAATATTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 31 0.63
48 18 0.37
ACGTcount: A:0.17, C:0.18, G:0.04, T:0.60
Consensus pattern (48 bp):
TTTCCATATATGTTATTCTCTTTTCCTTTCCTATATTTGATTATCTAT
Found at i:26416552 original size:18 final size:18
Alignment explanation
Indices: 26416529--26416563 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26416519 TATATTAAAA
*
26416529 AATTTATATAAATAATAT
1 AATTTATATAAAAAATAT
*
26416547 AATTTATTTAAAAAATA
1 AATTTATATAAAAAATA
26416564 AAATGAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTTATATAAAAAATAT
Found at i:26426104 original size:880 final size:880
Alignment explanation
Indices: 26424404--26426164 Score: 3371
Period size: 880 Copynumber: 2.0 Consensus size: 880
26424394 CATGTATAAA
26424404 GGAAAATAAGAAATTTGAAATAGACTTACTGGTGTATTTTAAGCTGGACAGGTTCTAGAGTTATT
1 GGAAAATAAGAAATTTGAAATAGACTTACTGGTGTATTTTAAGCTGGACAGGTTCTAGAGTTATT
*
26424469 GCCAACCATCTCGCATCTTTGACAGTCATTTTGATTCCTCTTTTGGATAGCTTTCTTCTATTTGA
66 ACCAACCATCTCGCATCTTTGACAGTCATTTTGATTCCTCTTTTGGATAGCTTTCTTCTATTTGA
*
26424534 TGTCTCACCCTCTTCTCTTCTTCTTTTATGTTTGGGTATTCTAGGGAGCTTTCTTTTTCAAAGAG
131 TGTCTCACCCTCTTCTCTTCTTCTTTTATGTTTGGGTATTCTAGGAAGCTTTCTTTTTCAAAGAG
* *
26424599 GGATTGATCAGTCCCATTCTAGTGTCTTTCTAGAAATTCTCACTTGGGATAGTGGAAAGTGTACA
196 GGATTGATCAGCCCCATTCTAGTGTCTTTCTAGAAATTCTCACTTGAGATAGTGGAAAGTGTACA
26424664 ATTGTACAACATTTTGTACGTATCCATTTTGTAATAGTCACTTACATATTCTTCAACTATTTGTT
261 ATTGTACAACATTTTGTACGTATCCATTTTGTAATAGTCACTTACATATTCTTCAACTATTTGTT
*
26424729 CTCTAAACAAAATTTTAGATACAGCCTCTAACATCTACATGCCTGTTAGATCCCAAGATATACAT
326 CTCTAAACAAAATTTTAGATACAACCTCTAACATCTACATGCCTGTTAGATCCCAAGATATACAT
*
26424794 GCACATTTCCAGCCCCTAACATCTACAACATAAGTATCCCTATTATAGTCAACCTCATAACCATC
391 GCACATTTCCAACCCCTAACATCTACAACATAAGTATCCCTATTATAGTCAACCTCATAACCATC
26424859 TTGCCCATTCCAACACACATGATAGTAATAACTTAAATATTTATGTTCTTCAATTTTTTTACTTA
456 TTGCCCATTCCAACACACATGATAGTAATAACTTAAATATTTATGTTCTTCAATTTTTTTACTTA
26424924 CTTTTTAGAATAAATCAGGGGACCAATCTTCACACTTTTTTCTTATTTTACATTACCCTATTCAT
521 CTTTTTAGAATAAATCAGGGGACCAATCTTCACACTTTTTTCTTATTTTACATTACCCTATTCAT
*
26424989 GACGTAGTGTCTAATATCCTCAAACAAAGAAATGATAGATTTAAACCTAGTTGTCACAAGTGCGA
586 GACGTAGTGTCTAATATCCTCAAACAAAGAAATGATAGATTTAAACCTAGTTCTCACAAGTGCGA
26425054 AGTTGAAGGCCTCACCGAAGTTGTTATTGATCACATCACACTTTGAATAAGTGTTGAAAAAAGCT
651 AGTTGAAGGCCTCACCGAAGTTGTTATTGATCACATCACACTTTGAATAAGTGTTGAAAAAAGCT
*
26425119 TTTTGGTTCCTTCCTCATCAAACTTTCCAAAGCAACTTTCTTTAACTAACTAATTCTTGTAGTAT
716 TTTTGGTTCCTTCCTCATCAAACTTTCCAAAGCAACTTTCTTTAACTAACCAATTCTTGTAGTAT
26425184 ATTTTTGAAAGAGACCTTTAATTGTTGACTTTCAACAAGCCCAAAATAGTTTCTATAAATCACCA
781 ATTTTTGAAAGAGACCTTTAATTGTTGACTTTCAACAAGCCCAAAATAGTTTCTATAAATCACCA
*
26425249 CCCCTTGTGCTCTTTCCTCCAGTTTGTATACATGT
846 CCCCCTGTGCTCTTTCCTCCAGTTTGTATACATGT
*
26425284 GGAAAATAAGAAGTTTGAAATAGACTTACTGGTGTATTTTAAGCTGGACAGGTTCTAGAGTTATT
1 GGAAAATAAGAAATTTGAAATAGACTTACTGGTGTATTTTAAGCTGGACAGGTTCTAGAGTTATT
26425349 ACCAACCATCTCGCATCTTTGACAGTCATTTTGATTCCTCTTTTGGATAGCTTTCTTCTATTTGA
66 ACCAACCATCTCGCATCTTTGACAGTCATTTTGATTCCTCTTTTGGATAGCTTTCTTCTATTTGA
*
26425414 TGTCTCACCCTCTTCTCTTTTTCTTTTATGTTTGGGTATTCTAGGAAGCTTTCTTTTTCAAAGAG
131 TGTCTCACCCTCTTCTCTTCTTCTTTTATGTTTGGGTATTCTAGGAAGCTTTCTTTTTCAAAGAG
26425479 GGATTGATCAGCCCCATTCTAGTGTCTTTCTAGAAATTCTCACTTGAGATAGTGGAAAGTGTACA
196 GGATTGATCAGCCCCATTCTAGTGTCTTTCTAGAAATTCTCACTTGAGATAGTGGAAAGTGTACA
*
26425544 ATTGTACAACATTTTGTACGTATCCCTTTTGTAATAGTCACTTACATATTCTTCAACTATTTGTT
261 ATTGTACAACATTTTGTACGTATCCATTTTGTAATAGTCACTTACATATTCTTCAACTATTTGTT
26425609 CTCTAAACAAAATTTTAGATACAACCTCTAACATCTACATGCCTGTTAGATCCCAAGATATACAT
326 CTCTAAACAAAATTTTAGATACAACCTCTAACATCTACATGCCTGTTAGATCCCAAGATATACAT
26425674 GCACAATTT-CAACCCCTAACATCTACAACATAAGTATCCCTATTATAGTCAACCTCATAACCAT
391 GCAC-ATTTCCAACCCCTAACATCTACAACATAAGTATCCCTATTATAGTCAACCTCATAACCAT
26425738 CTTGCCCATTCCAACACACATGATAGTAATAACTTAAATATTTATGTTCTTCAATTTTTTTACTT
455 CTTGCCCATTCCAACACACATGATAGTAATAACTTAAATATTTATGTTCTTCAATTTTTTTACTT
26425803 ACTTTTTAGAATAAATCAGGGGACCAATCTTCACACTTTTTTCTTATTTTACATTACCCTATTCA
520 ACTTTTTAGAATAAATCAGGGGACCAATCTTCACACTTTTTTCTTATTTTACATTACCCTATTCA
*
26425868 TGACGTAGTGTCTAATATCCTCAAACAAAGAAATGATAGATTTAAACCTAGTTCTCACAAGTGTG
585 TGACGTAGTGTCTAATATCCTCAAACAAAGAAATGATAGATTTAAACCTAGTTCTCACAAGTGCG
*
26425933 AAGTTGAAGGCCTCACCGAAGTTGTTATTGATCGCATCACACTTTGAATAAGTGTTGAAAAAAGC
650 AAGTTGAAGGCCTCACCGAAGTTGTTATTGATCACATCACACTTTGAATAAGTGTTGAAAAAAGC
26425998 TTTTTGGTTCCTTCCTCATCAAACTTTCCAAAGCAACTTTCTTTAACTAACCAATTCTTGTAGTA
715 TTTTTGGTTCCTTCCTCATCAAACTTTCCAAAGCAACTTTCTTTAACTAACCAATTCTTGTAGTA
*
26426063 TATTTTTGAAAGAGACCTTTAGTTGTTGACTTTCAACAAGCCCAAAATAGTTTCTATAAATCACC
780 TATTTTTGAAAGAGACCTTTAATTGTTGACTTTCAACAAGCCCAAAATAGTTTCTATAAATCACC
26426128 ACCCCCTGTGCTCTTTCCTCCAGTTTGTATACATGT
845 ACCCCCTGTGCTCTTTCCTCCAGTTTGTATACATGT
26426164 G
1 G
26426165 TCTTGCACAG
Statistics
Matches: 865, Mismatches: 15, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
880 861 1.00
881 4 0.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (880 bp):
GGAAAATAAGAAATTTGAAATAGACTTACTGGTGTATTTTAAGCTGGACAGGTTCTAGAGTTATT
ACCAACCATCTCGCATCTTTGACAGTCATTTTGATTCCTCTTTTGGATAGCTTTCTTCTATTTGA
TGTCTCACCCTCTTCTCTTCTTCTTTTATGTTTGGGTATTCTAGGAAGCTTTCTTTTTCAAAGAG
GGATTGATCAGCCCCATTCTAGTGTCTTTCTAGAAATTCTCACTTGAGATAGTGGAAAGTGTACA
ATTGTACAACATTTTGTACGTATCCATTTTGTAATAGTCACTTACATATTCTTCAACTATTTGTT
CTCTAAACAAAATTTTAGATACAACCTCTAACATCTACATGCCTGTTAGATCCCAAGATATACAT
GCACATTTCCAACCCCTAACATCTACAACATAAGTATCCCTATTATAGTCAACCTCATAACCATC
TTGCCCATTCCAACACACATGATAGTAATAACTTAAATATTTATGTTCTTCAATTTTTTTACTTA
CTTTTTAGAATAAATCAGGGGACCAATCTTCACACTTTTTTCTTATTTTACATTACCCTATTCAT
GACGTAGTGTCTAATATCCTCAAACAAAGAAATGATAGATTTAAACCTAGTTCTCACAAGTGCGA
AGTTGAAGGCCTCACCGAAGTTGTTATTGATCACATCACACTTTGAATAAGTGTTGAAAAAAGCT
TTTTGGTTCCTTCCTCATCAAACTTTCCAAAGCAACTTTCTTTAACTAACCAATTCTTGTAGTAT
ATTTTTGAAAGAGACCTTTAATTGTTGACTTTCAACAAGCCCAAAATAGTTTCTATAAATCACCA
CCCCCTGTGCTCTTTCCTCCAGTTTGTATACATGT
Found at i:26427445 original size:3 final size:3
Alignment explanation
Indices: 26427437--26427471 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
26427427 GAAAGTGACT
*
26427437 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC CTC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
26427472 TTGCATCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:26428669 original size:28 final size:27
Alignment explanation
Indices: 26428583--26428672 Score: 83
Period size: 28 Copynumber: 3.3 Consensus size: 27
26428573 AGGGTTGGTG
* **
26428583 AATTTTTTGAAGCAAAGAGAGTTGCTGA
1 AATTTTTTGAAG-AAATAGAGTTAATGA
* ** *
26428611 AATTTTTTGAATGAAATAGGGTTCGT-C
1 AATTTTTTGAA-GAAATAGAGTTAATGA
26428638 AATTTTTTGAACGAAATAGAGTTAATGA
1 AATTTTTTGAA-GAAATAGAGTTAATGA
26428666 AATTTTT
1 AATTTTT
26428673 AAAGGATATT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
27 22 0.44
28 27 0.54
29 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.39
Consensus pattern (27 bp):
AATTTTTTGAAGAAATAGAGTTAATGA
Found at i:26428671 original size:27 final size:26
Alignment explanation
Indices: 26428581--26428672 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 26
26428571 AAAGGGTTGG
* * **
26428581 TGAATTTTTTGAAGCAAAGAGAGTTGC
1 TGAAATTTTTGAAG-AAATAGAGTTAA
* **
26428608 TGAAATTTTTTGAATGAAATAGGGTTCG
1 TGAAA-TTTTTGAA-GAAATAGAGTTAA
* *
26428636 TCAATTTTTTGAACGAAATAGAGTTAA
1 TGAAATTTTTGAA-GAAATAGAGTTAA
26428663 TGAAATTTTT
1 TGAAATTTTT
26428673 AAAGGATATT
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
27 30 0.60
28 19 0.38
29 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (26 bp):
TGAAATTTTTGAAGAAATAGAGTTAA
Found at i:26431015 original size:21 final size:22
Alignment explanation
Indices: 26430973--26431015 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26430963 TAAACGAAGT
* *
26430973 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
26430995 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
26431016 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:26434964 original size:49 final size:49
Alignment explanation
Indices: 26434840--26434983 Score: 184
Period size: 49 Copynumber: 2.9 Consensus size: 49
26434830 ATATGCATTA
* * * *
26434840 ATATATATATGTGCATGACTTAAATGAAGCTAAA-C-AGTATATATATGC
1 ATATATATATATGCATGACTTAAATGAAGCTAAACCTACTA-ATAAAGGC
*
26434888 ATTAATATATATATGCATGACTTAAATGAAGCTAAACCTACTAATAAAGGT
1 A-T-ATATATATATGCATGACTTAAATGAAGCTAAACCTACTAATAAAGGC
* *
26434939 ATATATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAA
1 ATATATATATATGCATGACTTAAATGAAGCTAAACCTACTAATAA
26434984 TGGTTAATTT
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
48 1 0.01
49 42 0.49
50 32 0.38
51 7 0.08
52 3 0.04
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (49 bp):
ATATATATATATGCATGACTTAAATGAAGCTAAACCTACTAATAAAGGC
Found at i:26437454 original size:13 final size:14
Alignment explanation
Indices: 26437438--26437478 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
26437428 TTTACAGATA
26437438 CAGATA-ACAGAAT
1 CAGATATACAGAAT
*
26437451 CAGATATGCAGAAT
1 CAGATATACAGAAT
*
26437465 -AGATATACATAAT
1 CAGATATACAGAAT
26437478 C
1 C
26437479 CTACCCCCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.22
Consensus pattern (14 bp):
CAGATATACAGAAT
Found at i:26437870 original size:32 final size:32
Alignment explanation
Indices: 26437819--26437901 Score: 96
Period size: 32 Copynumber: 2.6 Consensus size: 32
26437809 TGAGCCCACA
* *
26437819 AGCCCGTGTAGCCCACACGCCCAGA-TTAGCCT
1 AGCCCATGTGGCCCACACGCCCA-ACTTAGCCT
* * *
26437851 TGCCCATTTGGCCCACACGCCCAACTTGGCCT
1 AGCCCATGTGGCCCACACGCCCAACTTAGCCT
*
26437883 AGCCCGTGTGGCCCACACG
1 AGCCCATGTGGCCCACACG
26437902 ACCACACCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 1 0.02
32 41 0.98
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.17
Consensus pattern (32 bp):
AGCCCATGTGGCCCACACGCCCAACTTAGCCT
Found at i:26446692 original size:16 final size:17
Alignment explanation
Indices: 26446656--26446693 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
26446646 ACTAACTTAA
*
26446656 TATTTAATATTTATGAT
1 TATTTAATATATATGAT
*
26446673 TATTTAA-ATATATTAT
1 TATTTAATATATATGAT
26446689 TATTT
1 TATTT
26446694 TATTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TATTTAATATATATGAT
Found at i:26446759 original size:27 final size:27
Alignment explanation
Indices: 26446736--26446791 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
26446726 AATATATTTA
* * *
26446736 TATTTTCATTATATTTTATGATATGTT
1 TATTTTAAATATATTTTATAATATGTT
* *
26446763 TATTTTAAATGTATTTTATAATATATT
1 TATTTTAAATATATTTTATAATATGTT
26446790 TA
1 TA
26446792 AAATAAGTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (27 bp):
TATTTTAAATATATTTTATAATATGTT
Found at i:26448000 original size:21 final size:23
Alignment explanation
Indices: 26447957--26448001 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
26447947 TAAAAAATTT
*
26447957 AAATCATAAAAATTGTATAAATA
1 AAATCATAAAAATTATATAAATA
*
26447980 AAAT-ATAAAAA-TATATTAATA
1 AAATCATAAAAATTATATAAATA
26448001 A
1 A
26448002 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AAATCATAAAAATTATATAAATA
Found at i:26453271 original size:10 final size:10
Alignment explanation
Indices: 26453256--26453281 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26453246 TATACTTTTG
26453256 AATTTTTTAA
1 AATTTTTTAA
26453266 AATTTTTTAA
1 AATTTTTTAA
26453276 AATTTT
1 AATTTT
26453282 AAAAATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:26455141 original size:36 final size:36
Alignment explanation
Indices: 26455094--26455171 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
26455084 ATATTTGACT
* *
26455094 TTTCTTCTCTCATCCCTCTATCTTTCTCCCATGTCTC
1 TTTC-TCTCTCATCCCTCTATATTTCTCCCATATCTC
* * **
26455131 TTTCTCTCTCATCCTTTTATATTTCTCTTATATCTC
1 TTTCTCTCTCATCCCTCTATATTTCTCCCATATCTC
26455167 TTTCT
1 TTTCT
26455172 TTCTACTCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
36 31 0.89
37 4 0.11
ACGTcount: A:0.10, C:0.33, G:0.01, T:0.55
Consensus pattern (36 bp):
TTTCTCTCTCATCCCTCTATATTTCTCCCATATCTC
Found at i:26457091 original size:28 final size:28
Alignment explanation
Indices: 26457051--26457113 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
26457041 GCTTTTTGAA
26457051 GTTTCTCTAACTGTTATTTACTGGTGGC
1 GTTTCTCTAACTGTTATTTACTGGTGGC
26457079 GTTTCTCTAACTGTTATTTACTGGTGGC
1 GTTTCTCTAACTGTTATTTACTGGTGGC
26457107 GTTTCTC
1 GTTTCTC
26457114 GACACAGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.48
Consensus pattern (28 bp):
GTTTCTCTAACTGTTATTTACTGGTGGC
Found at i:26469285 original size:15 final size:16
Alignment explanation
Indices: 26469253--26469285 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26469243 AAATTTGCAC
26469253 TTGGAAGGGTTAAAGG
1 TTGGAAGGGTTAAAGG
26469269 TTGGAAGGGTT-AAGG
1 TTGGAAGGGTTAAAGG
26469284 TT
1 TT
26469286 ATGCCCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.27, C:0.00, G:0.42, T:0.30
Consensus pattern (16 bp):
TTGGAAGGGTTAAAGG
Found at i:26474051 original size:18 final size:18
Alignment explanation
Indices: 26474028--26474067 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26474018 TCCCCGACCA
26474028 CCTCCACCTCCGCCTCCG
1 CCTCCACCTCCGCCTCCG
* * *
26474046 CCTCCACGTCCTCCTCTG
1 CCTCCACCTCCGCCTCCG
26474064 CCTC
1 CCTC
26474068 TAGAATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.62, G:0.10, T:0.23
Consensus pattern (18 bp):
CCTCCACCTCCGCCTCCG
Found at i:26476217 original size:21 final size:20
Alignment explanation
Indices: 26476165--26476217 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 20
26476155 ATAATATAAA
26476165 TTTTATATTTATTTTTCACTT
1 TTTTA-ATTTATTTTTCACTT
26476186 TTTT-ATATTATTTTTCA-TGGT
1 TTTTAAT-TTATTTTTCACT--T
26476207 TTTTAATTTAT
1 TTTTAATTTAT
26476218 ACTGATCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 13 0.46
22 2 0.07
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTAATTTATTTTTCACTT
Found at i:26486458 original size:20 final size:21
Alignment explanation
Indices: 26486435--26486482 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
26486425 CAATTTATTT
* *
26486435 ATACTT-TTTAAAAATTATCG
1 ATACTTGTTTAAAAAGTATCA
26486455 ATACTTGTTTAAAAAGTATCA
1 ATACTTGTTTAAAAAGTATCA
26486476 ATACTTG
1 ATACTTG
26486483 GGGGATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (21 bp):
ATACTTGTTTAAAAAGTATCA
Found at i:26487861 original size:149 final size:149
Alignment explanation
Indices: 26487586--26488017 Score: 458
Period size: 149 Copynumber: 2.9 Consensus size: 149
26487576 GAGAGTGCAA
* * * *
26487586 AGGGGACACTATGGTGTTCGAGCATTAATA-TTAGAAATGGAAAAATAGAGGAATGAACGGATGG
1 AGGGGACACTACGGTGTTCGAGCATTAA-AGTTAGAAATGGAGAAATGGAGGAATGAACAGATGG
** * * *
26487650 ATAGGGAAATGAAATTTCCATTAAGATTCTGATATCATGTGTTGCTGAGTGCAAATCGTGATGTG
65 ATAGGGAAATGAAATTTCCATTAAGATTCCAAAATCAGGTGTTGCTGAGTGCAAACCGTGATGTG
***
26487715 CGAAGC-TCTAGGCCTTGTTG
130 CGAAGCTTC-AGGCCTTACGG
* * * ** *
26487735 AGGGTACACTACGGTGTTCGAGCATTAAGGTTAGAAATGGTGAAATGGAGGAATGGGCTGATGGA
1 AGGGGACACTACGGTGTTCGAGCATTAAAGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGA
* * * *
26487800 TAGGGAAATGAGATTTCTATTAAGATTCCAAAATCAGGTGTTGTTGAGTGCAAACCGTGATGTGT
66 TAGGGAAATGAAATTTCCATTAAGATTCCAAAATCAGGTGTTGCTGAGTGCAAACCGTGATGTGC
*
26487865 GAAGCTTCGGGCCTTACGG
131 GAAGCTTCAGGCCTTACGG
* * * **
26487884 AGGGGACAC--CGTAGTGTTCAAGCATCAAAGTTAGAAATGGAGAAATGGAAGAATGTCCAGATG
1 AGGGGACACTACG--GTGTTCGAGCATTAAAGTTAGAAATGGAGAAATGGAGGAATGAACAGATG
* *** ** * * * *
26487947 GATAGGGAAATGAAATTTCCGTTAAGATTCTGCAATCAAATGTTGCTTAGTACAAACCATGATAT
64 GATAGGGAAATGAAATTTCCATTAAGATTCCAAAATCAGGTGTTGCTGAGTGCAAACCGTGATGT
26488012 GCGAAG
129 GCGAAG
26488018 GGGACATTAC
Statistics
Matches: 234, Mismatches: 45, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
147 2 0.01
149 230 0.98
150 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (149 bp):
AGGGGACACTACGGTGTTCGAGCATTAAAGTTAGAAATGGAGAAATGGAGGAATGAACAGATGGA
TAGGGAAATGAAATTTCCATTAAGATTCCAAAATCAGGTGTTGCTGAGTGCAAACCGTGATGTGC
GAAGCTTCAGGCCTTACGG
Found at i:26489673 original size:17 final size:17
Alignment explanation
Indices: 26489634--26489679 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
26489624 CTTCCCCCTA
26489634 TTTACTTTCCCTC-AAACT
1 TTTA-TTTCCC-CAAAACT
26489652 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAAC-T
26489669 TTTATTTCCCC
1 TTTATTTCCCC
26489680 CCTAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.04
16 9 0.36
17 5 0.20
18 10 0.40
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTATTTCCCCAAAACT
Found at i:26490037 original size:36 final size:36
Alignment explanation
Indices: 26489997--26490068 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
26489987 CAAAATACAT
*
26489997 AGTGACAAGAATCTGAAGATAATTGCAACAACTAAG
1 AGTGACAAGAATCTGAAGATAATTGAAACAACTAAG
*
26490033 AGTGACAAGAATCTGAAGATGATTGAAACAACTAAG
1 AGTGACAAGAATCTGAAGATAATTGAAACAACTAAG
26490069 CAAGCAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.19
Consensus pattern (36 bp):
AGTGACAAGAATCTGAAGATAATTGAAACAACTAAG
Found at i:26495708 original size:23 final size:23
Alignment explanation
Indices: 26495646--26495709 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
26495636 TTTTATATGC
* *
26495646 GCAAGTGATAGTGGCACTATAGT
1 GCAAGTGATAGTGGCATTACAGT
26495669 GCAAGTG-TCAGTGGCATTACAGT
1 GCAAGTGAT-AGTGGCATTACAGT
*
26495692 GCAAGTGATAGCGGCATT
1 GCAAGTGATAGTGGCATT
26495710 TAGGTGCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 1 0.03
23 34 0.94
24 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (23 bp):
GCAAGTGATAGTGGCATTACAGT
Found at i:26495716 original size:23 final size:22
Alignment explanation
Indices: 26495646--26495718 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
26495636 TTTTATATGC
*
26495646 GCAAGTGATAGTGGCACTATAGT
1 GCAAGTGATAGTGGCA-TTTAGT
*
26495669 GCAAGTG-TCAGTGGCATTACAGT
1 GCAAGTGAT-AGTGGCATT-TAGT
*
26495692 GCAAGTGATAGCGGCATTTAGGT
1 GCAAGTGATAGTGGCATTTA-GT
26495715 GCAA
1 GCAA
26495719 ATTATTGACT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 3 0.07
23 38 0.90
24 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (22 bp):
GCAAGTGATAGTGGCATTTAGT
Found at i:26503946 original size:16 final size:16
Alignment explanation
Indices: 26503927--26503957 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26503917 CTTTTTTCTT
26503927 TTTGTTTTCTTTTTCC
1 TTTGTTTTCTTTTTCC
26503943 TTTGTTTTCTTTTTC
1 TTTGTTTTCTTTTTC
26503958 TTTTTCTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.77
Consensus pattern (16 bp):
TTTGTTTTCTTTTTCC
Found at i:26503972 original size:22 final size:23
Alignment explanation
Indices: 26503931--26503977 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
26503921 TTTCTTTTTG
*
26503931 TTTTCTTTTTCCTTTGTTTT-CT
1 TTTTCTTTTTCCCTTGTTTTGCT
26503953 TTTTCTTTTTCTCCTT-TTTTGCT
1 TTTTCTTTTTC-CCTTGTTTTGCT
26503976 TT
1 TT
26503978 ATTTTTACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.77
Consensus pattern (23 bp):
TTTTCTTTTTCCCTTGTTTTGCT
Found at i:26509698 original size:29 final size:27
Alignment explanation
Indices: 26509666--26509720 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
26509656 TAATATAAAA
26509666 TTAT-AAATAATATAATTATATATTAAAGT
1 TTATCAAATAAT-TAA-TA-ATATTAAAGT
*
26509695 TTATCAAATTATTAATAATATTAAAG
1 TTATCAAATAATTAATAATATTAAAG
26509721 ATATTTATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 9 0.38
28 2 0.08
29 7 0.29
30 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (27 bp):
TTATCAAATAATTAATAATATTAAAGT
Found at i:26523019 original size:11 final size:11
Alignment explanation
Indices: 26523003--26523038 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
26522993 TATATAAATA
26523003 TATAAATTAAT
1 TATAAATTAAT
*
26523014 TATAAAGTATAT
1 TATAAATTA-AT
26523026 TATAAATTAAT
1 TATAAATTAAT
26523037 TA
1 TA
26523039 CATTATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:26523024 original size:28 final size:28
Alignment explanation
Indices: 26522993--26523047 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
26522983 TATTATTATT
*
26522993 TATATAAATATATAAATTA-ATTATAAAG
1 TATAT-AATAAATAAATTACATTATAAAG
* *
26523021 TATATTATAAATTAATTACATTATAAA
1 TATATAATAAATAAATTACATTATAAA
26523048 TATTATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (28 bp):
TATATAATAAATAAATTACATTATAAAG
Found at i:26523231 original size:20 final size:19
Alignment explanation
Indices: 26523199--26523237 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
26523189 TAAATAAAAG
*
26523199 GAAATAAAAAGAAAAGAAA
1 GAAACAAAAAGAAAAGAAA
26523218 GAAACAAAACAGAAAAGAAA
1 GAAACAAAA-AGAAAAGAAA
26523238 CAGAATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (19 bp):
GAAACAAAAAGAAAAGAAA
Found at i:26523961 original size:3 final size:3
Alignment explanation
Indices: 26523948--26523978 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26523938 GTGAGGTAAG
26523948 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26523979 GTAGTAGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:26530375 original size:28 final size:29
Alignment explanation
Indices: 26530344--26530421 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
26530334 TATTATTATT
*
26530344 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
26530372 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
26530400 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
26530422 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:26530421 original size:31 final size:28
Alignment explanation
Indices: 26530355--26530422 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
26530345 ATATAAATAT
**
26530355 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
26530383 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
26530414 ATAAATTAA
1 ATAAATTAA
26530423 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:26530570 original size:15 final size:14
Alignment explanation
Indices: 26530547--26530614 Score: 55
Period size: 15 Copynumber: 4.6 Consensus size: 14
26530537 GTAATTAAAT
* *
26530547 AAAAGGAAATAAAA
1 AAAAAGAAAGAAAA
26530561 GAAAAAGAAAGAAAA
1 -AAAAAGAAAGAAAA
26530576 AAAACAGAAAAGAAACA
1 AAAA-AG-AAAGAAA-A
* *
26530593 TAATAGAAAGAAAA
1 AAAAAGAAAGAAAA
*
26530607 AGAAAGAA
1 AAAAAGAA
26530615 GACGAAACAG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
14 10 0.23
15 21 0.49
16 9 0.21
17 3 0.07
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.04
Consensus pattern (14 bp):
AAAAAGAAAGAAAA
Found at i:26530621 original size:10 final size:10
Alignment explanation
Indices: 26530558--26530614 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
26530548 AAAGGAAATA
26530558 AAAGAAAAAG
1 AAAGAAAAAG
26530568 AAAGAAAAA-
1 AAAGAAAAAG
*
26530577 AAACAGAAAAG
1 AAAGA-AAAAG
* *
26530588 AAACATAATAG
1 AAAGA-AAAAG
26530599 AAAGAAAAAG
1 AAAGAAAAAG
26530609 AAAGAA
1 AAAGAA
26530615 GACGAAACAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 4 0.10
10 23 0.57
11 13 0.32
ACGTcount: A:0.77, C:0.04, G:0.16, T:0.04
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:26530634 original size:11 final size:11
Alignment explanation
Indices: 26530618--26530643 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26530608 GAAAGAAGAC
26530618 GAAACAGGGGA
1 GAAACAGGGGA
26530629 GAAACAGGGGA
1 GAAACAGGGGA
26530640 GAAA
1 GAAA
26530644 GAAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:26534419 original size:42 final size:42
Alignment explanation
Indices: 26534373--26534456 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
26534363 GTCTCCTCAA
**
26534373 CCGTGCAACTCACTGAGATGCCGTACACGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
* * * *
26534415 CCGTGTAACTCTCTGAGCTGCCACACATGCCCGTGTGCCAGG
1 CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
26534457 TCGTTTGCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.19
Consensus pattern (42 bp):
CCGTGCAACTCACTGAGATGCCACACACGCCCGTGTGCCAGG
Found at i:26541690 original size:33 final size:32
Alignment explanation
Indices: 26541586--26541701 Score: 151
Period size: 32 Copynumber: 3.6 Consensus size: 32
26541576 TAAATGAATA
* *
26541586 TTGTTATCATTTAACAAAATTAAAGTTGATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* *
26541618 TTGTTATCATTTTACAAAATTAAAGTTGTAAT
1 TTGTTATCATTTCACAAAATTAAAGTTGAAAT
* * *
26541650 TTATTATCATTTCACAAAATGAAAACTTGAAAT
1 TTGTTATCATTTCACAAAAT-TAAAGTTGAAAT
*
26541683 TTGTTATCATTTCATAAAA
1 TTGTTATCATTTCACAAAA
26541702 CGCGCGTTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 47 0.64
33 26 0.36
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (32 bp):
TTGTTATCATTTCACAAAATTAAAGTTGAAAT
Found at i:26547578 original size:22 final size:19
Alignment explanation
Indices: 26547516--26547569 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
26547506 AATCTTCAAG
*
26547516 GATATGCAATCTTACATAT
1 GATATGCAATCTTAGATAT
*
26547535 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26547554 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26547570 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26547594 original size:22 final size:21
Alignment explanation
Indices: 26547531--26547595 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 21
26547521 GCAATCTTAC
26547531 ATATGATATGTAATCTT--AG
1 ATATGATATGTAATCTTAAAG
*
26547550 ATATGATATGCAATCTTAGAAG
1 ATATGATATGTAATCTTA-AAG
*
26547572 ATATGATTTTGTAATCTTAAAG
1 ATATGA-TATGTAATCTTAAAG
26547594 AT
1 AT
26547596 TTAATTTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
19 16 0.41
22 13 0.33
23 10 0.26
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (21 bp):
ATATGATATGTAATCTTAAAG
Found at i:26547605 original size:21 final size:23
Alignment explanation
Indices: 26547548--26547605 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
26547538 ATGTAATCTT
* *
26547548 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
26547570 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
26547592 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
26547606 GATATCTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 12 0.40
23 10 0.33
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:26555196 original size:46 final size:46
Alignment explanation
Indices: 26555103--26555200 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 46
26555093 TTTCTAATTT
* *
26555103 TTTGTGTGATTCAATGGATTGGGTTTATTTTGGGAGTGGATCGGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
* *
26555149 TTTGTGTGAGTCAGTGGATTGGGTTTATTTTGGGAGTAGG-TTAGTG
1 TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGT-GGATCAGTG
26555195 TTTGTG
1 TTTGTG
26555201 GCCTGGTTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
46 45 0.96
47 2 0.04
ACGTcount: A:0.14, C:0.03, G:0.38, T:0.45
Consensus pattern (46 bp):
TTTGTGTGAGTCAATGGATTGGGTTTATTTTGGGAGTGGATCAGTG
Found at i:26555503 original size:30 final size:30
Alignment explanation
Indices: 26555468--26555540 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
26555458 TTTTTAGTGG
*
26555468 CACACGGCCGTGTCACTAGCTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
26555498 CACACGGCCATGTCACTAACTCGTATGTGA
1 CACACGGCCGTGTCACTAACTCGTATGTGA
*
26555528 CACATGGCCGTGT
1 CACACGGCCGTGT
26555541 GGCCAGATCG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (30 bp):
CACACGGCCGTGTCACTAACTCGTATGTGA
Found at i:26572900 original size:37 final size:37
Alignment explanation
Indices: 26572835--26572943 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
26572825 TATGTATGAT
* *
26572835 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26572870 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
26572907 CACTTATCACTTTGTCTCTTGATCAGATAACTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
26572944 TAAAGCTATC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 10 0.15
36 3 0.04
37 55 0.81
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:26572986 original size:52 final size:52
Alignment explanation
Indices: 26572907--26573175 Score: 295
Period size: 52 Copynumber: 5.2 Consensus size: 52
26572897 TAAGTGTAGC
* * * *
26572907 CACTTATCACTTTGTCTCTTGATCAGATAACTGTAGCTAAAGCTATCACTTTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
*
26572960 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-CTAAAGCTATCACTTAT
* *
26573012 CAC---T---TTGTCTCTTGATCAGATAAGTATAGC-AGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTA-AAGCTATCACTTAT
* **
26573058 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
* * * *
26573110 CACTTTCCACTTGTCACTTGATTAGATAAGTGTAG-TCGAAGCTATCACCTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTAT
*
26573162 CATTTTGTCACTTG
1 CACTTT-TCACTTG
26573176 ATCAGAAGTA
Statistics
Matches: 188, Mismatches: 16, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 37 0.20
49 1 0.01
52 127 0.68
53 19 0.10
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
Found at i:26573017 original size:98 final size:98
Alignment explanation
Indices: 26572907--26573115 Score: 357
Period size: 98 Copynumber: 2.1 Consensus size: 98
26572897 TAAGTGTAGC
* * *
26572907 CACTTATCACTTTGTCTCTTGATCAGATAACTGTAGCTA-AAGCTATCACTTTTCACTTTTCACT
1 CACTTATCACTTTGTCTCTTGATCAGATAACTATAGC-AGAAGCTATCACTTATCACTTTCCACT
26572971 TGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
65 TGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
*
26573005 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCAGAAGCTATCACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCTCTTGATCAGATAACTATAGCAGAAGCTATCACTTATCACTTTCCACTT
*
26573070 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
26573103 CACTTATCACTTT
1 CACTTATCACTTT
26573116 CCACTTGTCA
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 104 0.99
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCTCTTGATCAGATAACTATAGCAGAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:26573170 original size:98 final size:94
Alignment explanation
Indices: 26572907--26573181 Score: 288
Period size: 98 Copynumber: 2.8 Consensus size: 94
26572897 TAAGTGTAGC
* * * * *
26572907 CACTTATCACTTTGTCTCTTGATCAGATAACTGTAGCTA-AAGCTATCACTTTTCACTTTTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGC-AGAAGCTATCACCTATCAC--TT--CT
26572971 TGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
61 TGTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
26573005 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCAGAAGCTATCACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCAGAAGCTATCACCTATCAC-TT---CTT
*
26573070 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
62 GTCACTTGATCAGATAAGTGTAGCCGAAACTAT
* *
26573103 CACTTATCACTTTCCACTTGTCACTTGATTAGATAAGTGTAGTC-GAAGCTATCACCTATCA-TT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAG-CAGAAGCTATCACCTATCACTT
26573166 -TTGTCACTTGATCAGA
59 CTTGTCACTTGATCAGA
26573182 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 8, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
97 4 0.03
98 114 0.71
100 1 0.01
102 2 0.01
104 38 0.24
105 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (94 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCAGAAGCTATCACCTATCACTTCTTGTCA
CTTGATCAGATAAGTGTAGCCGAAACTAT
Found at i:26580580 original size:23 final size:23
Alignment explanation
Indices: 26580554--26580626 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
26580544 TCGAAAATGA
*
26580554 CCACGTAGCATATTGTGGACAAG
1 CCACATAGCATATTGTGGACAAG
* * *
26580577 CCACCATA-CA-AATGTCGAAAACGG
1 CCA-CATAGCATATTGTGGACAA--G
26580601 CCACATAGCATATTGTGGACAAG
1 CCACATAGCATATTGTGGACAAG
26580624 CCA
1 CCA
26580627 GCACATAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
22 8 0.21
23 13 0.34
24 9 0.24
25 8 0.21
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (23 bp):
CCACATAGCATATTGTGGACAAG
Found at i:26580590 original size:47 final size:47
Alignment explanation
Indices: 26580519--26580631 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
26580509 AACACACCAT
* * * * *
26580519 TTGTGGACAAGCTACTACATAAATGTCGAAAATGACCACGTAGCATA
1 TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
* *
26580566 TTGTGGACAAGCCACCATACAAATGTCGAAAACGGCCACATAGCATA
1 TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
*
26580613 TTGTGGACAAGCCAGCACA
1 TTGTGGACAAGCCACCACA
26580632 TAATTGCAGA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACACAAATGTCGAAAACGACCACATAGCATA
Found at i:26584796 original size:41 final size:41
Alignment explanation
Indices: 26584751--26584832 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
26584741 CGACTTGACG
26584751 TACGACCT-CACACATGCCCGGGTGACCTACAAGGGCTGCCA
1 TACGACCTAC-CACATGCCCGGGTGACCTACAAGGGCTGCCA
* * * *
26584792 TACGACCTACCACATGGCCGTGTGACCTACACGGGTTGCCA
1 TACGACCTACCACATGCCCGGGTGACCTACAAGGGCTGCCA
26584833 CACGGTCGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 35 0.97
42 1 0.03
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.17
Consensus pattern (41 bp):
TACGACCTACCACATGCCCGGGTGACCTACAAGGGCTGCCA
Found at i:26586455 original size:19 final size:19
Alignment explanation
Indices: 26586412--26586481 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 19
26586402 AGAGCAATAC
* *
26586412 TAACTTGTTTTAAAATAGTTT
1 TAACTTGATTGAAAAT-G-TT
26586433 TAACTTGATTGAAAATGTT
1 TAACTTGATTGAAAATGTT
**
26586452 TAACTCAATTGAAACCAT-TT
1 TAACTTGATTGAAA--ATGTT
26586472 TAACTTGATT
1 TAACTTGATT
26586482 TTATCATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
19 14 0.34
20 11 0.27
21 16 0.39
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (19 bp):
TAACTTGATTGAAAATGTT
Found at i:26601780 original size:6 final size:6
Alignment explanation
Indices: 26601771--26601799 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
26601761 TTCATTATTC
26601771 TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
26601800 TCTTTCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:26601863 original size:34 final size:34
Alignment explanation
Indices: 26601791--26601867 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
26601781 TGTTTTTGTT
***
26601791 TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTCTT
1 TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTAAA
* *
26601825 TTTGTTTTTTCTTTCTTTCTTTTTGTTGT-TTAAA
1 TTTGTTTTTTCTTTCTTTCTTTCTCTT-TATTAAA
26601859 TTTGTTTTT
1 TTTGTTTTT
26601868 GGTTTTCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.05, C:0.12, G:0.06, T:0.77
Consensus pattern (34 bp):
TTTGTTTTTTCTTTCTTTCTTTCTCTTTATTAAA
Found at i:26602369 original size:31 final size:31
Alignment explanation
Indices: 26602297--26602370 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
26602287 AGCAACTTGG
** ***
26602297 GTAGGCCGTGTGGGGCACATGGGCTGGTTAA
1 GTAGGCCGTGTGGACCACATGGGCTGCCCAA
*
26602328 GTAGGTCGTGTGGACCACATGGGCTGCCCAA
1 GTAGGCCGTGTGGACCACATGGGCTGCCCAA
*
26602359 TTAGGCCGTGTG
1 GTAGGCCGTGTG
26602371 AGCCCATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.16, C:0.20, G:0.41, T:0.23
Consensus pattern (31 bp):
GTAGGCCGTGTGGACCACATGGGCTGCCCAA
Found at i:26602953 original size:34 final size:34
Alignment explanation
Indices: 26602913--26602980 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
26602903 TTTGGTATGA
* * *
26602913 TTGGTTGGACAGAGTTGGTATGTAGCGGATGGGG
1 TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
*
26602947 TTGGTTGAACAGAGTTGATGTGTAGCAGATGGGG
1 TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
26602981 GTAGAATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.21, C:0.06, G:0.44, T:0.29
Consensus pattern (34 bp):
TTGGTTGAACAGAGTTGATATGTAGCAGATGGGG
Found at i:26606020 original size:31 final size:31
Alignment explanation
Indices: 26605963--26606021 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
26605953 TGGCAACTTG
* * **
26605963 GGTAGGTCGTGTGGGGCACATGGGCTGGTTA
1 GGTAAGTCGTGTGGGCCACACAGGCTGGTTA
26605994 GGTAAGTCGTGTGGGCCACACAGGCTGG
1 GGTAAGTCGTGTGGGCCACACAGGCTGG
26606022 CCAATTAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.46, T:0.22
Consensus pattern (31 bp):
GGTAAGTCGTGTGGGCCACACAGGCTGGTTA
Found at i:26613209 original size:50 final size:48
Alignment explanation
Indices: 26613084--26613519 Score: 198
Period size: 50 Copynumber: 8.8 Consensus size: 48
26613074 GCAATGTCGG
* * * ** *
26613084 GGAAACCAGATCCGCCGTCGTAACTTCAATCTATTCCACCGCAT-TGCTA
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGCATAT-C-A
* ** * * *
26613133 AGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGC-ATATCA
* * * *** * *
26613182 GCGAAACCAGATCCGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAA
1 G-GAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGCA-T-ATCA
** * * *
26613233 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGC-ATATCA
* * * ***
26613282 GGGAAACCAGATTCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTA-CTA
1 -GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGCA-TATC-A
* * * *
26613332 AGAAAGTAAGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGC-TA--A
1 GGAAA-CAAGATCCGCCGTCGTAGCTTCAATCT-TT---TTA-ACTGCATATCA
** * * *
26613383 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCTATATCA
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGC-ATATCA
* * ** * *
26613432 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTTCGCTGCACTGCTAA
1 -GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGCA-T-ATCA
** * * *
26613483 GGAAGTAAGATCCGTCGTTGTGGCTTCAATCTTTTTA
1 GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTA
26613520 CTTTTCAACC
Statistics
Matches: 279, Mismatches: 86, Indels: 43
0.68 0.21 0.11
Matches are distributed among these distances:
45 4 0.01
46 2 0.01
47 2 0.01
49 44 0.16
50 209 0.75
51 12 0.04
53 2 0.01
55 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
GGAAACAAGATCCGCCGTCGTAGCTTCAATCTTTTTAACTGCATATCA
Found at i:26613269 original size:100 final size:100
Alignment explanation
Indices: 26613085--26613364 Score: 436
Period size: 100 Copynumber: 2.8 Consensus size: 100
26613075 CAATGTCGGG
* * * *
26613085 GAAACCAGATCCGCCGTCGTAACTTCAATCTATTCCACCGCATTGCTAA-GAAGTAAGATCCGCC
1 GAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTGCTAAGGAAGTAAGATCCGCC
26613149 GTTGTGGCTTCAATCTTTTTAATTGCTATATCAGC
66 GTTGTGGCTTCAATCTTTTTAATTGCTATATCAGC
* *
26613184 GAAACCAGATCCGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCGCC
1 GAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTGCTAAGGAAGTAAGATCCGCC
*
26613249 GTTGTGGCTTCAATCTTTTTAATTGCTATATCAGG
66 GTTGTGGCTTCAATCTTTTTAATTGCTATATCAGC
* * *
26613284 GAAACCAGATTCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCC
1 GAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTGCTAAGGAAGTAAGATCCGCC
* * *
26613349 ATCGTAGCTTCAATCT
66 GTTGTGGCTTCAATCT
26613365 GTTCCGCTAC
Statistics
Matches: 165, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 43 0.26
100 122 0.74
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (100 bp):
GAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTGCTAAGGAAGTAAGATCCGCC
GTTGTGGCTTCAATCTTTTTAATTGCTATATCAGC
Found at i:26613360 original size:150 final size:150
Alignment explanation
Indices: 26613190--26613514 Score: 560
Period size: 150 Copynumber: 2.2 Consensus size: 150
26613180 CAGCGAAACC
*
26613190 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
*
26613255 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATTCGCCGTCGTAGCTTCAATCTATTCC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCC
26613320 GCTGCACTACTAAGAAAGTA
131 GCTGCACTACTAAGAAAGTA
26613340 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
* *
26613405 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTTC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCC
* *
26613470 GCTGCACTGCTAAGGAAGTA
131 GCTGCACTACTAAGAAAGTA
* * * *
26613490 AGATCCGTCGTTGTGGCTTCAATCT
1 AGATCCGCCATCGTAGCTTCAATCT
26613515 TTTTACTTTT
Statistics
Matches: 165, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 165 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (150 bp):
AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
GCTTCAATCTTTTTAATTGCTATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCC
GCTGCACTACTAAGAAAGTA
Found at i:26613399 original size:100 final size:100
Alignment explanation
Indices: 26613091--26613514 Score: 296
Period size: 100 Copynumber: 4.2 Consensus size: 100
26613081 CGGGGAAACC
* * * * * * *
26613091 AGATCCGCCGTCGTAACTTCAATCTATTCCACCGCATTGCTAAG-AAGTAAGATCCGCCGTTGTG
1 AGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCCGTCGTA
* ***
26613155 GCTTCAATCT-TTT---TA-ATTGCTATATCAGCGAAACC
66 GCTTCAATCTGTTTCGCTACACTGC--TA--AG-GAAGTA
* * * * * *
26613190 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCCGTCGTA
* * * * ***
26613255 GCTTCAATCTTTTTAATTGCTATA-T-C-AGGGAAACC
66 GCTTCAATC-TGTT--TCGCTACACTGCTAAGGAAGTA
* *
26613290 AGATTCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCCATCGTA
1 AGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCCGTCGTA
*
26613355 GCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTA
66 GCTTCAATCTGTTTCGCTACACTGCTAAGGAAGTA
* * * **** * **
26613390 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCTA-TA-TCAGGGAAA-CCAGATCCGCCGTC
1 AGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGC-ACTACT-A-AGAAAGTAAGATCCGCCGTC
*
26613452 GTAGCTTCAATCTGTTTCGCTGCACTGCTAAGGAAGTA
63 GTAGCTTCAATCTGTTTCGCTACACTGCTAAGGAAGTA
* * *
26613490 AGATCCGTCGTTGTGGCTTCAATCT
1 AGATCCGCCGTCGTAGCTTCAATCT
26613515 TTTTACTTTT
Statistics
Matches: 272, Mismatches: 38, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
97 5 0.02
98 1 0.00
99 43 0.16
100 207 0.76
101 7 0.03
102 2 0.01
103 1 0.00
104 1 0.00
106 1 0.00
107 3 0.01
108 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (100 bp):
AGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGCACTACTAAGAAAGTAAGATCCGCCGTCGTA
GCTTCAATCTGTTTCGCTACACTGCTAAGGAAGTA
Found at i:26613515 original size:100 final size:100
Alignment explanation
Indices: 26613340--26613519 Score: 324
Period size: 100 Copynumber: 1.8 Consensus size: 100
26613330 TAAGAAAGTA
26613340 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
26613405 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
66 GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
* * * *
26613440 AGATCCGCCGTCGTAGCTTCAATCTGTTTCGCTGCACTGCTAAGGAAGTAAGATCCGTCGTTGTG
1 AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
26613505 GCTTCAATCTTTTTA
66 GCTTCAATCTTTTTA
26613520 CTTTTCAACC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (100 bp):
AGATCCGCCATCGTAGCTTCAATCTGTTCCGCTACACTGCTAAGGAAGTAAGATCCGCCGTTGTG
GCTTCAATCTTTTTAATTGCTATATCAGGGAAACC
Found at i:26623195 original size:40 final size:40
Alignment explanation
Indices: 26623151--26623336 Score: 175
Period size: 40 Copynumber: 4.7 Consensus size: 40
26623141 TCTCCTCGTT
*
26623151 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTTGGGACTTAGCCCGGATT-TAGTAATTCGCA
* * *
26623191 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAGCCCGGATTTAGTAATTCGCA
* *
26623231 CAAATGCC-TTCGGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTTGGGA-CTTAGCCCGGATTTAGTAAT-TCGCA
* * * * * *
26623271 CAAATGCC-TTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTTGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
*
26623312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTTGGGACTTAGCCCGGA
26623337 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
39 5 0.04
40 104 0.84
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTTGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:26623296 original size:80 final size:80
Alignment explanation
Indices: 26623151--26623336 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
26623141 TCTCCTCGTT
* *
26623151 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
* *
26623214 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
26623231 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
26623294 GGATATGGTCACTTAGCA
63 GGATATAGTAACTTAGCA
26623312 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
26623337 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 8 0.09
80 69 0.77
81 13 0.14
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:26638253 original size:63 final size:64
Alignment explanation
Indices: 26638111--26638273 Score: 274
Period size: 63 Copynumber: 2.6 Consensus size: 64
26638101 CTTGAAGGAA
* *
26638111 AGAGACCAAAGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
*
26638175 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTT-AAAAAAGTAAAGTAAAAATGG
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
* *
26638238 AGAGGCTAAGGTGAAAACCCGCAAAGGGCGCCTTGA
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGA
26638274 GACCAAAGGG
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
63 54 0.57
64 40 0.43
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.16
Consensus pattern (64 bp):
AGAGGCCAAGGTGAAAACCCGCAAAGGGCGCTTTGATTCCTTAAAAAAAGTAAAGTAAAAATAG
Found at i:26639677 original size:46 final size:45
Alignment explanation
Indices: 26639479--26640014 Score: 230
Period size: 44 Copynumber: 12.3 Consensus size: 45
26639469 GAAGATGGCG
* * * * * *
26639479 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGT-A
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAG-AATTAA
* * * * * *
26639524 -ATCCTATTTCCCTGAGATTACAGTGGAATGGAT-TAA-AATAAA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAATTAA
* * * *
26639566 GGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---GCA-TCA
1 -GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATCGAAGAATTAA
* * *
26639608 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAATTA-A
* * * * *
26639654 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT-A
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAG-AATTAA
* * * *** * *
26639699 -ATCCTATTTCCTTGAGATTACAGTGGAACGGAT-TAA-AATAAA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAATTAA
* * * * *
26639741 GGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATC---GCATCAA
1 -GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATCGAAGAATTAA
* * *
26639784 G-TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAA-TTAA
* * * * * * *
26639829 GATCTTATCTCCTTGAGATTATAGCGGAGCAGATTGAAGCTAGT-A
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAG-AATTAA
* * * * *
26639874 -ATCCTATCTCCATGAGATTACAGTAGAGTAGAT-TAA-AATAAA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAATTAA
* * *
26639916 GGATCTTATCT--CTGA-AGTTACAGTAGAGTAGATC---GTATCAA
1 -GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATCGAAGAATTAA
* * *
26639957 G-TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
1 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAA-TTAA
*
26640002 GACCTTATCTCCC
1 GATCTTATCTCCC
26640015 AGATAATGTA
Statistics
Matches: 357, Mismatches: 94, Indels: 79
0.67 0.18 0.15
Matches are distributed among these distances:
39 8 0.02
40 1 0.00
41 79 0.22
42 28 0.08
43 14 0.04
44 140 0.39
45 9 0.03
46 75 0.21
47 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (45 bp):
GATCTTATCTCCCTGAGATTACAGTGGAGTAGATCGAAGAATTAA
Found at i:26639770 original size:175 final size:175
Alignment explanation
Indices: 26639479--26640014 Score: 914
Period size: 175 Copynumber: 3.1 Consensus size: 175
26639469 GAAGATGGCG
* *
26639479 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCATGAGATTA
*
26639544 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAA
*
26639609 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
*
26639654 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCATGAGATTA
* *
26639719 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAA
66 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAA
26639784 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
* * * *
26639829 GATCTTATCTCCTTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCATGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCATGAGATTA
* * * *
26639894 CAGTAGAGTAGATTAAAATAAAGGATCTTA--TCTCTGAAGTTACAGTAGAGTAGATCGTATCAA
66 CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAA
26639957 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
131 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
*
26640002 GACCTTATCTCCC
1 GATCTTATCTCCC
26640015 AGATAATGTA
Statistics
Matches: 342, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
173 87 0.25
175 255 0.75
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (175 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCATGAGATTA
CAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAA
GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCA
Found at i:26640107 original size:50 final size:50
Alignment explanation
Indices: 26640031--26640170 Score: 160
Period size: 50 Copynumber: 2.8 Consensus size: 50
26640021 TGTACTGAAG
* *
26640031 CAGATTAAAGCCACAACGGCGAATCTTGCTTTCCCGACATTGCAGTC-AAGA
1 CAGATTAAAGCTACAACAGCGAATCTTGCTTTCCCGACATTGCAG-CGAA-A
* * *
26640082 -AGATTAAAGCTACAACAGCGAATCTTAC-TTCCCAGATAATGCAGCGAAA
1 CAGATTAAAGCTACAACAGCGAATCTTGCTTTCCC-GACATTGCAGCGAAA
* * *
26640131 CAGATTAAAGCTATAATAGCGAATCTTGCTTCCCCGACAT
1 CAGATTAAAGCTACAACAGCGAATCTTGCTTTCCCGACAT
26640171 CACAATTACG
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
49 7 0.09
50 63 0.85
51 4 0.05
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (50 bp):
CAGATTAAAGCTACAACAGCGAATCTTGCTTTCCCGACATTGCAGCGAAA
Found at i:26640444 original size:13 final size:13
Alignment explanation
Indices: 26640428--26640462 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
26640418 TAAAACCCAA
*
26640428 ATATAAAATATAT
1 ATATAAAATAAAT
26640441 ATATAAAATAAAT
1 ATATAAAATAAAT
26640454 ATAATAAAA
1 AT-ATAAAA
26640463 GTTCAATACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAATAAAT
Found at i:26643956 original size:55 final size:55
Alignment explanation
Indices: 26643825--26643965 Score: 167
Period size: 55 Copynumber: 2.6 Consensus size: 55
26643815 ATTTAGATTG
* * * * *
26643825 AATCGATTGTTATGTTGAAATATTACTTCTTTTAAATCGATTGTTTTTATGTTTA
1 AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
* * * * *
26643880 AATTGATTGTCATGTTAGAATACTGCTTCTTCTGAATCGATTGTATATATGTTTA
1 AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
*
26643935 AATCGATTGTTATAG-TGGAATACTATTTCTT
1 AATCGATTGTTAT-GTTGGAATACTACTTCTT
26643966 ATTCTTTTGA
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
55 69 0.99
56 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (55 bp):
AATCGATTGTTATGTTGGAATACTACTTCTTCTAAATCGATTGTATATATGTTTA
Found at i:26660588 original size:59 final size:58
Alignment explanation
Indices: 26660495--26660644 Score: 212
Period size: 59 Copynumber: 2.6 Consensus size: 58
26660485 GTACTTGTGG
* *
26660495 CTTGTGA-TTGCGGTTGCTTTTAGTGCCCAAACAAATTCAATCCTTGACATGCTGGTT
1 CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
* * * *
26660552 CTTGTGACTTGTGGTTTACTTTTGGTGCCAAAACAAATTTAATCCTTGACATGCTGGTA
1 CTTGTGACTTGCGG-TTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
* *
26660611 GTTGTGGCTTGCGGTTGCTTTTAGTGCCAAAACA
1 CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACA
26660645 TAGCAACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
57 7 0.09
58 23 0.29
59 50 0.62
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (58 bp):
CTTGTGACTTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTA
Found at i:26660739 original size:26 final size:26
Alignment explanation
Indices: 26660686--26660741 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
26660676 AATGTCACAC
* *
26660686 ATTTTGAAGCTTCATTTTCTTTGATT
1 ATTTTGAAGCTTCAATTTCTATGATT
*
26660712 ATTTTGAA-CTTCAATTTCATATGCTT
1 ATTTTGAAGCTTCAATTTC-TATGATT
26660738 ATTT
1 ATTT
26660742 CAGATGTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.55
Consensus pattern (26 bp):
ATTTTGAAGCTTCAATTTCTATGATT
Found at i:26661269 original size:120 final size:120
Alignment explanation
Indices: 26661132--26661951 Score: 1324
Period size: 120 Copynumber: 6.8 Consensus size: 120
26661122 GTAGTATTAT
* *
26661132 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
* * * * *
26661196 TATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
65 TATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* *
26661252 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
* * * * *
26661316 TATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
65 TATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * *
26661372 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTACTAAATTATA
1 ATATATTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATA
* * *
26661436 TATTTTTATTAAATTATATTTAATAATTATTATGTTAATTTATATTTTACAGTATC
65 TATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* * *
26661492 ATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATAT
1 ATATATTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
26661557 ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
66 ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* *
26661612 ATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATAT
1 ATATATTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
26661677 ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
66 ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
* *
26661732 ATATATTATTATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
1 ATATATTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
*
26661797 AGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
66 ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
26661852 ATATATTATGATTTCA-ATAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTCAGA-AAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
26661916 TATTTTAATTAAAATATATTTAATAATAATTATGTT
65 TATTTTAATTAAAATATATTTAATAATAATTATGTT
26661952 TAAATATGAT
Statistics
Matches: 678, Mismatches: 20, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
119 4 0.01
120 674 0.99
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
ATATATTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
ATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
Found at i:26661551 original size:38 final size:39
Alignment explanation
Indices: 26661509--26661918 Score: 135
Period size: 38 Copynumber: 10.3 Consensus size: 39
26661499 ATGATTTGAG
26661509 TAAATTA-ATATAAGAATATTAATTATTAAGAATTTCAT
1 TAAATTATATATAAGAATATTAATTATTAAGAATTTCAT
* * * * * *
26661547 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT-GT
1 TAAATTATATA---TAA-GAATAT-TAATTATTAAGAATT-TCAT
* * * * * * * *
26661591 TAATTTATATTTTACAGTA-TCATATATTATG-ATTTCAG
1 TAAATTATATATAAGAATATTAAT-TATTAAGAATTTCAT
26661629 TAAATTA-ATATAAGAATATTAATTATTAAGAATTTCAT
1 TAAATTATATATAAGAATATTAATTATTAAGAATTTCAT
* * * * * *
26661667 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT-GT
1 TAAATTATATA---TAA-GAATAT-TAATTATTAAGAATT-TCAT
* * * * * * ** *
26661711 TAATTTATATTTTACAGTA-TCATATATT-ATTATTTCAG
1 TAAATTATATATAAGAATATTAAT-TATTAAGAATTTCAT
*
26661749 TAAATTA-ATATAAGAATATTAATTATTAAGAATTTTAT
1 TAAATTATATATAAGAATATTAATTATTAAGAATTTCAT
* * * * * *
26661787 TAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT-GT
1 TAAATTATATA---TAA-GAATAT-TAATTATTAAGAATT-TCAT
* * * * * * * *
26661831 TAATTTATATTTTACAGTA-TCATATATTATG-ATTTCAA
1 TAAATTATATATAAGAATATTAAT-TATTAAGAATTTCAT
*
26661869 TAAATTA-ATATAAGAATATTAATTATTAAGAATTTTAT
1 TAAATTATATATAAGAATATTAATTATTAAGAATTTCAT
26661907 TAAATTATATAT
1 TAAATTATATAT
26661919 TTTAATTAAA
Statistics
Matches: 255, Mismatches: 83, Indels: 67
0.63 0.20 0.17
Matches are distributed among these distances:
37 40 0.16
38 89 0.35
39 24 0.09
40 6 0.02
41 6 0.02
42 9 0.04
43 12 0.05
44 66 0.26
45 3 0.01
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (39 bp):
TAAATTATATATAAGAATATTAATTATTAAGAATTTCAT
Done.