Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 90410113
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3900000 characters in sequence are not A, C, G, or T
File 215 of 268
Found at i:72457037 original size:27 final size:27
Alignment explanation
Indices: 72456967--72457058 Score: 69
Period size: 27 Copynumber: 3.3 Consensus size: 27
72456957 CAGCTTTTAT
* *
72456967 TAAAAATTAGAAAATAAATTATAAAAATAA
1 TAAAAA-TATAAAA-AAATTA-AAAATTAA
* *
72456997 T-AAATTTTAGAAAAAATTAAAAATTAA
1 TAAAAATATA-AAAAAATTAAAAATTAA
* * * *
72457024 TAAAAATATAAAAAATTTTAAATTTAC
1 TAAAAATATAAAAAAATTAAAAATTAA
72457051 TAAAAATA
1 TAAAAATA
72457059 GAATTTTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
27 29 0.58
28 14 0.28
29 6 0.12
30 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (27 bp):
TAAAAATATAAAAAAATTAAAAATTAA
Found at i:72457045 original size:18 final size:17
Alignment explanation
Indices: 72456989--72457045 Score: 51
Period size: 19 Copynumber: 3.1 Consensus size: 17
72456979 AATAAATTAT
*
72456989 AAAAATAATAAATTTTAGA
1 AAAAATAAAAAATTTT--A
* *
72457008 AAAAATTAAAAATTAATA
1 AAAAATAAAAAATT-TTA
72457026 AAAATATAAAAAATTTTA
1 AAAA-ATAAAAAATTTTA
72457044 AA
1 AA
72457046 TTTACTAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 9 0.29
19 21 0.68
20 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAAATAAAAAATTTTA
Found at i:72457268 original size:9 final size:9
Alignment explanation
Indices: 72457254--72457436 Score: 63
Period size: 9 Copynumber: 19.1 Consensus size: 9
72457244 TTTTGGTAAG
72457254 ATAATTTTT
1 ATAATTTTT
72457263 ATAATTTTTTT
1 ATAA--TTTTT
*
72457274 ATGAA-ATTT
1 AT-AATTTTT
*
72457283 ATATTTTTT
1 ATAATTTTT
*
72457292 TTACATTTTGT
1 ATA-ATTTT-T
72457303 ATAATTTTCT
1 ATAATTTT-T
*
72457313 -TACGA-GTTT
1 ATA--ATTTTT
*
72457322 ATAAAATTTT
1 AT-AATTTTT
72457332 ATAATTATTT
1 ATAATT-TTT
*
72457342 AT-ATTTCT
1 ATAATTTTT
72457350 AT-ATATTTT
1 ATAAT-TTTT
*
72457359 ATATTTTTT
1 ATAATTTTT
*
72457368 ATAAAATTTT
1 AT-AATTTTT
*
72457378 ACAATTTTT
1 ATAATTTTT
72457387 -TATATTTTGT
1 ATA-ATTTT-T
**
72457397 ACGATTTTT
1 ATAATTTTT
72457406 ATAAATTTTTT
1 AT-AA-TTTTT
72457417 ATAATTTTTT
1 ATAA-TTTTT
*
72457427 CTAATTTTT
1 ATAATTTTT
72457436 A
1 A
72457437 ATAAAATTAG
Statistics
Matches: 130, Mismatches: 24, Indels: 40
0.67 0.12 0.21
Matches are distributed among these distances:
8 8 0.06
9 53 0.41
10 48 0.37
11 19 0.15
12 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:72457404 original size:46 final size:48
Alignment explanation
Indices: 72457319--72457420 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 48
72457309 TTCTTACGAG
* *
72457319 TTTATAAAATTTTATAATTATTTATATTTCTATATA-TTTTAT-ATTT
1 TTTATAAAATTTTACAATTATTTATATTTCTATAGATTTTTATAATTT
* *
72457365 TTTATAAAATTTTACAATTTTTTATATTT-TGTACGATTTTTATAAATTT
1 TTTATAAAATTTTACAATTATTTATATTTCTATA-GATTTTTAT-AATTT
72457414 TTTATAA
1 TTTATAA
72457421 TTTTTTCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
45 3 0.06
46 28 0.58
47 6 0.12
49 11 0.23
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (48 bp):
TTTATAAAATTTTACAATTATTTATATTTCTATAGATTTTTATAATTT
Found at i:72457413 original size:20 final size:19
Alignment explanation
Indices: 72457363--72457425 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
72457353 TATTTTATAT
*
72457363 TTTTTATAAAATTTTACAA
1 TTTTTATAAATTTTTACAA
* *
72457382 TTTTT-TATATTTTGTACGA
1 TTTTTATAAATTTT-TACAA
*
72457401 TTTTTATAAATTTTTTATAA
1 TTTTTATAAA-TTTTTACAA
72457421 TTTTT
1 TTTTT
72457426 TCTAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 6 0.17
19 14 0.40
20 11 0.31
21 4 0.11
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (19 bp):
TTTTTATAAATTTTTACAA
Found at i:72457415 original size:11 final size:10
Alignment explanation
Indices: 72457401--72457440 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
72457391 TTTTGTACGA
72457401 TTTTTATAAAT
1 TTTTTAT-AAT
72457412 TTTTTATAAT
1 TTTTTATAAT
*
72457422 TTTTTCTAAT
1 TTTTTATAAT
*
72457432 TTTTAATAA
1 TTTTTATAA
72457441 AATTAGGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:72457593 original size:89 final size:88
Alignment explanation
Indices: 72457439--72457620 Score: 231
Period size: 89 Copynumber: 2.1 Consensus size: 88
72457429 AATTTTTAAT
* ** * **
72457439 AAAATTAGGGGCTTAATTTTTTTTTGAAAATTTTTGAGGGTTTTTTTGATGCATTTTGAAAGTTC
1 AAAAATAGGGGCTTAATTTTTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGTTC
* * * *
72457504 AAGTAATCAATTGAGTGCAAAAG
66 AAGTAACCAAATAAGTGCAAAAA
*
72457527 AAAAATAGGGGCTTAATTTCCTTTTTTGAAAAGATTTGAAGGCCTTTTTGAT-CATTTTGAAGGT
1 AAAAATAGGGGCTTAATTT--TTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGT
*
72457591 TCAAGTACCCAAATAAGTGCAAAAA
64 TCAAGTAACCAAATAAGTGCAAAAA
72457616 AAAAA
1 AAAAA
72457621 GAAACATAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
88 18 0.22
89 36 0.45
90 26 0.32
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.37
Consensus pattern (88 bp):
AAAAATAGGGGCTTAATTTTTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGTTC
AAGTAACCAAATAAGTGCAAAAA
Found at i:72457641 original size:89 final size:90
Alignment explanation
Indices: 72457455--72457642 Score: 193
Period size: 89 Copynumber: 2.1 Consensus size: 90
72457445 AGGGGCTTAA
** * ** * * *
72457455 TTTTTTTTTGAAAATTTTTGAGGGTTTTTTTGATGCATTTTGAAAGTTCAAGTAATCAATTGAGT
1 TTTTTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGTTCAAGTAACCAAATAAGT
*** *
72457520 GCAAAAGAAAAATAGGGGCTTAATT
66 GCAAAAGAAAAATAGAAACATAATT
** * *
72457545 TCCTTTTTTGAAAAGATTTGAAGGCCTTTTTGAT-CATTTTGAAGGTTCAAGTACCCAAATAAGT
1 TTTTTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGTTCAAGTAACCAAATAAGT
72457609 GCAAAA-AAAAA-AGAAACATAATT
66 GCAAAAGAAAAATAGAAACATAATT
72457632 ACTTTTTTTTT
1 --TTTTTTTTT
72457643 TAAGTTTGAG
Statistics
Matches: 78, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
87 8 0.10
88 5 0.06
89 38 0.49
90 27 0.35
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (90 bp):
TTTTTTTTTGAAAAGATTTGAAGGCCTTTTTGATGCATTTTGAAAGTTCAAGTAACCAAATAAGT
GCAAAAGAAAAATAGAAACATAATT
Found at i:72461674 original size:68 final size:67
Alignment explanation
Indices: 72461565--72461817 Score: 231
Period size: 68 Copynumber: 3.8 Consensus size: 67
72461555 TACAGATAGT
** * * * *
72461565 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 ATGTAGCTAGGTCACATGGGTGGTACTGATGTGTACACCATGTAG-ACAAGAGAGCTAC-AGAGA
72461628 TTATA
64 -TATA
*
72461633 ATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACAG-GATA
1 ATGTAGCTAGGTCACATGGGTGGTACTGATGTGTACACCATGTAGACAAGAGAGCTACAGAGATA
72461696 T-
66 TA
* * * * * * *
72461697 ATGTAGCTAGGTCGCATGCGTGGCTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTAC-GAGA
1 ATGTAGCTAGGTCACATGGGTGG-TACTGATG-TGTACACCATGTAGACAAGAGAGCTACAGAGA
72461761 TA-A
64 TATA
*
72461764 AT-TGGCTAGGTCACATGGGTGGTACTGAATGT-T-CACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCACATGGGTGGTACTG-ATGTGTACACCATGTAG-ACAAGAGAGCT
72461818 GAACTCTATG
Statistics
Matches: 153, Mismatches: 23, Indels: 23
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 20 0.13
65 8 0.05
66 23 0.15
67 34 0.22
68 47 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (67 bp):
ATGTAGCTAGGTCACATGGGTGGTACTGATGTGTACACCATGTAGACAAGAGAGCTACAGAGATA
TA
Found at i:72471386 original size:27 final size:28
Alignment explanation
Indices: 72471349--72471488 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
72471339 AGCATGGCTG
* *
72471349 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
72471375 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
*
72471403 CCAGA-ATAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
72471430 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
72471457 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
72471484 CCAGA
1 CCAGA
72471489 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 5 0.05
27 82 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:72488242 original size:40 final size:40
Alignment explanation
Indices: 72488148--72488292 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
72488138 TACTCGAATG
*
72488148 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
72488189 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
72488229 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
72488269 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72488293 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:72494162 original size:24 final size:25
Alignment explanation
Indices: 72494135--72494193 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
72494125 TCAATTGAGA
*
72494135 GAGCTTACTGATATTCA-ATCATAT
1 GAGCTTACTGATATTCAGATCATAG
* *
72494159 GAGCTTA-TCGATATTCAGCTCGTAG
1 GAGCTTACT-GATATTCAGATCATAG
72494184 GAGCTTACTG
1 GAGCTTACTG
72494194 TTTATAACTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.03
24 15 0.52
25 12 0.41
26 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTACTGATATTCAGATCATAG
Found at i:72496776 original size:47 final size:48
Alignment explanation
Indices: 72496663--72496780 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 48
72496653 GACGAGGGCT
* *
72496663 AGTGTAAG-GCATGTCTGGGACAT-GCATCGGCTAAGAGATAATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGATAATAGTC
* *
72496709 AGTGTAAGACCAT-TCTGGGACATGGCATCGACTTA-AGCT-ATGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGATAAT-AGTC
*
72496755 AGTGTAAGACCATGACTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
72496781 TATTGGCACT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
45 2 0.03
46 38 0.60
47 23 0.37
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTAAGAGATAATAGTC
Found at i:72498714 original size:21 final size:20
Alignment explanation
Indices: 72498678--72498717 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
72498668 CTCATGAAAT
72498678 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
72498698 AGGGCA-ACACGCGCGTGTGG
1 AGGGCACACAC-C-CGTGTGG
72498718 TCATTATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:72505405 original size:46 final size:48
Alignment explanation
Indices: 72505345--72505458 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
72505335 ACAGGACAGA
* * *
72505345 AATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGAGAAAGG
1 AATGACCCATGTAAGTCCATATCATATATATATGGCATTGGAGAAAGG
* * *
72505391 AATGACCCATGTAAGCCCATATTATATATATATGGCATTGGAGACAGG
1 AATGACCCATGTAAGTCCATATCATATATATATGGCATTGGAGAAAGG
* **
72505439 AATAATTCATGTAAGTCCAT
1 AATGACCCATGTAAGTCCAT
72505459 GTCGAAGACA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 21 0.38
47 1 0.02
48 34 0.61
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (48 bp):
AATGACCCATGTAAGTCCATATCATATATATATGGCATTGGAGAAAGG
Found at i:72505441 original size:48 final size:46
Alignment explanation
Indices: 72505339--72505441 Score: 125
Period size: 46 Copynumber: 2.2 Consensus size: 46
72505329 GACAGGACAG
* * * * *
72505339 GACAGAAATGAGCCATGTAAGTCCATATCAGTTATATGGCTTTGGA
1 GACAGGAATGACCCATGTAAGCCCATATCAATTATATGGCATTGGA
* *
72505385 GAAAGGAATGACCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGACCCATGTAAGCCCATATCA-AT-TATATGGCATTGGA
72505433 GACAGGAAT
1 GACAGGAAT
72505442 AATTCATGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 25 0.53
47 1 0.02
48 21 0.45
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
GACAGGAATGACCCATGTAAGCCCATATCAATTATATGGCATTGGA
Found at i:72514718 original size:19 final size:19
Alignment explanation
Indices: 72514681--72514718 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72514671 ACTTGCCAGA
*
72514681 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
72514700 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
72514719 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:72535404 original size:42 final size:43
Alignment explanation
Indices: 72535343--72535440 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
72535333 GACTTCTGTT
72535343 TTACGTGTAAGACCATGTCTGAGACA-TCGGCATCG-TATTTGA
1 TTACGTGTAAGACCATGTCTGAGACAGT-GGCATCGATATTTGA
* * * * *
72535385 TTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTGAGACAGTGGCATCGATATTTGA
*
72535428 TTACATGTAAGAC
1 TTACGTGTAAGAC
72535441 TGCGTCTGGG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGAGACAGTGGCATCGATATTTGA
Found at i:72538031 original size:21 final size:21
Alignment explanation
Indices: 72537993--72538032 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
72537983 AGAGCATCAA
*
72537993 GAGCCAAAAGGAGCCAAAAAC
1 GAGCCAAAAGGAGACAAAAAC
72538014 GAGCCAAAAAGG-GACAAAA
1 GAGCC-AAAAGGAGACAAAA
72538033 CGGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.55, C:0.20, G:0.25, T:0.00
Consensus pattern (21 bp):
GAGCCAAAAGGAGACAAAAAC
Found at i:72547631 original size:21 final size:21
Alignment explanation
Indices: 72547584--72547631 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
72547574 CCTTTCATAA
*
72547584 AGTATCGATTATTTTACTCTG
1 AGTATCGATTATTTTACTATG
72547605 -GCTATCGATTATTTTACTATG
1 AG-TATCGATTATTTTACTATG
72547626 AGTATC
1 AGTATC
72547632 AATACTCGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.46
Consensus pattern (21 bp):
AGTATCGATTATTTTACTATG
Found at i:72549730 original size:20 final size:21
Alignment explanation
Indices: 72549705--72549744 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72549695 TTACCCAGTT
72549705 CATG-TTATCGAAATTTTCAA
1 CATGTTTATCGAAATTTTCAA
* *
72549725 CATGTTTATGGTAATTTTCA
1 CATGTTTATCGAAATTTTCA
72549745 TGAAAAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (21 bp):
CATGTTTATCGAAATTTTCAA
Found at i:72553105 original size:79 final size:80
Alignment explanation
Indices: 72552960--72553143 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
72552950 TTGAATGATG
*
72552960 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGACATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGACATT
72553024 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * ** *
72553038 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGACA
*
72553100 TTTGTGCGAGTTACTATA
64 -TTGTGCGAGATACTATA
* * *
72553118 ACCGTGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72553144 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 33 0.37
79 40 0.45
80 15 0.17
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGACATT
GTGCGAGATACTATA
Found at i:72553150 original size:40 final size:40
Alignment explanation
Indices: 72552960--72553143 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
72552950 TTGAATGATG
* * * *
72552960 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
72553000 TCCGGACTAAGAT-CCGAAGACA-TTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72553039 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72553078 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
72553119 -CCGTGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72553144 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 8 0.07
39 40 0.33
40 71 0.58
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72553174 original size:79 final size:78
Alignment explanation
Indices: 72553012--72553176 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
72553002 CGGACTAAGA
* * **
72553012 TCCGAAGACATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
72553077 ATCCGGGTTAAGT
66 ATCCGGGTTAAAT
* * * *
72553090 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGTGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCA-TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
*
72553153 CTATATCC-GGTTAAAT
62 CTAAATCCGGGTTAAAT
72553169 TCCGAAGG
1 TCCGAAGG
72553177 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
78 10 0.14
79 37 0.51
80 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TCCGAAGGCATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAAT
Found at i:72561143 original size:79 final size:81
Alignment explanation
Indices: 72561007--72561191 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
72560997 TTGAATGATG
*
72561007 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72561071 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72561086 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72561148 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72561166 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72561192 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72561205 original size:40 final size:40
Alignment explanation
Indices: 72561008--72561191 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
72560998 TGAATGATGT
* * * *
72561008 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72561048 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
72561088 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72561126 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72561167 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72561192 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72561213 original size:79 final size:79
Alignment explanation
Indices: 72561060--72561224 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
72561050 GGACTAAGAT
* **
72561060 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
72561125 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
72561139 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
72561202 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72561218 CCGAAGG
1 CCGAAGG
72561225 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72569147 original size:40 final size:40
Alignment explanation
Indices: 72569064--72569249 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
72569054 TTGAATGATG
* * * *
72569064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
72569104 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72569144 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72569184 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72569225 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72569250 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72569256 original size:80 final size:79
Alignment explanation
Indices: 72569117--72569282 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
72569107 GGACTAAGAT
* **
72569117 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
72569181 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
72569197 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
72569261 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
72569276 CCGAAGG
1 CCGAAGG
72569283 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:72571217 original size:16 final size:15
Alignment explanation
Indices: 72571193--72571222 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
72571183 AACTGTTTTA
72571193 TTACAAATTTCACTC
1 TTACAAATTTCACTC
72571208 TTACATAATTTCACT
1 TTACA-AATTTCACT
72571223 TACTCTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:72571503 original size:48 final size:48
Alignment explanation
Indices: 72571427--72571608 Score: 177
Period size: 48 Copynumber: 3.7 Consensus size: 48
72571417 AAGCTATTTG
* * *
72571427 GTACGCATAATAGCTTGCACTTAGTACTATACATGCGACCAACAATCT
1 GTACACATAATAGCCTGCACTTAGTACTACACATGCGACCAACAATCT
* * * * * *
72571475 GTACACATAATAGCCTACACTTAGTACTACACACGTGATCAA-AGTTTTCGA
1 GTACACATAATAGCCTGCACTTAGTACTACACATGCGACCAACA---ATC-T
* * *
72571526 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT
1 GTACACATAATAGCCTGCACTTAGTACTACACATGCGACC-AACAATCT
* *
72571575 GGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 -GTACACATAATAGCCTGCACTTAGTACTACACA
72571609 CATGACCTAA
Statistics
Matches: 107, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
47 1 0.01
48 35 0.33
50 35 0.33
51 34 0.32
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (48 bp):
GTACACATAATAGCCTGCACTTAGTACTACACATGCGACCAACAATCT
Found at i:72571562 original size:99 final size:101
Alignment explanation
Indices: 72571427--72571609 Score: 289
Period size: 99 Copynumber: 1.8 Consensus size: 101
72571417 AAGCTATTTG
* *
72571427 GTACGCATAATAGCTTGCACTTAGTACTATACATGCGACC-AACAATCT-GTACACATAATAGCC
1 GTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAATAGCC
72571490 TACACTTAGTACTACACACGTGATCAAAGTTTTCGA
66 TACACTTAGTACTACACACGTGATCAAAGTTTTCGA
* * * *
72571526 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCC
1 GTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAATAGCC
*
72571591 TGCACTTAGTACTACACAC
66 TACACTTAGTACTACACAC
72571610 ATGACCTAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 37 0.49
100 7 0.09
101 31 0.41
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
GTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAATAGCC
TACACTTAGTACTACACACGTGATCAAAGTTTTCGA
Found at i:72571616 original size:50 final size:50
Alignment explanation
Indices: 72571420--72571660 Score: 200
Period size: 51 Copynumber: 4.8 Consensus size: 50
72571410 GTAACCGAAG
* * * * * *
72571420 CTATTTGGTACGCATAATAGCTTGCACTTAGTACTATACATGCGACC-AA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * * *
72571469 CAATCT-GTACACATAATAGCCTACACTTAGTACTACACACGTGATCAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * *
72571518 GT-TTTCGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTATCT-G-GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* **
72571569 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AA
* *** * *
72571621 CCATCTTAAACACATAGTAGCCTGCACATGGTACTACACA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
72571661 ATGTTCTCAC
Statistics
Matches: 152, Mismatches: 33, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
48 35 0.23
49 6 0.04
50 36 0.24
51 38 0.25
52 37 0.24
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:72571643 original size:52 final size:50
Alignment explanation
Indices: 72571531--72571660 Score: 152
Period size: 52 Copynumber: 2.6 Consensus size: 50
72571521 TTCGAGTACG
** * **
72571531 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGAAACA
* * *
72571581 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACCATCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACACGACCT--AACCATCTGAAACA
* *
72571633 CATAGTAGCCTGCACATGGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
72571661 ATGTTCTCAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 32 0.48
52 35 0.52
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACACGACCTAACCATCTGAAACA
Found at i:72571827 original size:13 final size:14
Alignment explanation
Indices: 72571809--72571842 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
72571799 GCCACATCTC
72571809 ATATAATAACA-AA
1 ATATAATAACATAA
72571822 ATATAATAACATAA
1 ATATAATAACATAA
*
72571836 AAATAAT
1 ATATAAT
72571843 CGATATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (14 bp):
ATATAATAACATAA
Found at i:72584188 original size:53 final size:52
Alignment explanation
Indices: 72584122--72584232 Score: 159
Period size: 53 Copynumber: 2.1 Consensus size: 52
72584112 CATGAAGTTC
*
72584122 TTATCATGAAACATTTACCTAACCCATTATCATTAAAACATTTACCTTACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCA-TAAAACATTTACCTAACCCA
* * ** *
72584175 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCCA
72584227 TTATCA
1 TTATCA
72584233 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 22 0.42
53 30 0.58
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATAAAACATTTACCTAACCCA
Found at i:72584194 original size:26 final size:26
Alignment explanation
Indices: 72584122--72584232 Score: 159
Period size: 26 Copynumber: 4.2 Consensus size: 26
72584112 CATGAAGTTC
72584122 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
72584148 TTATCATTAAAACATTTACCTTACCCA
1 TTATCA-TGAAACATTTACCTAACCCA
* *
72584175 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
72584201 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
72584227 TTATCA
1 TTATCA
72584233 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 54 0.69
27 24 0.31
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:72587941 original size:39 final size:40
Alignment explanation
Indices: 72587840--72588063 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
72587830 TTGAATGATG
* *
72587840 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
72587879 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
72587920 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
72587959 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72587998 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72588037 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72588064 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 74 0.45
40 77 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72588027 original size:79 final size:80
Alignment explanation
Indices: 72587840--72588063 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
72587830 TTGAATGATG
* * * *
72587840 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
72587903 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
72587920 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
72587982 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
72587998 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
72588063 G
66 G
72588064 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 35 0.28
79 56 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:72588094 original size:79 final size:79
Alignment explanation
Indices: 72587896--72588096 Score: 212
Period size: 79 Copynumber: 2.6 Consensus size: 79
72587886 CTAAGATCCG
** * * * * *
72587896 AAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTAATT
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATA
72587960 CCGGGCTAAGCCCA
66 CCGGGCTAAGCCCA
** * *
72587974 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAAT-
* *
72588038 ACCGGGCTATGTCCCG
65 ACCGGGCTAAG-CCCA
* *
72588054 AAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
72588097 TACGTGATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 31 0.30
79 50 0.48
80 24 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATA
CCGGGCTAAGCCCA
Found at i:72595886 original size:39 final size:40
Alignment explanation
Indices: 72595782--72596005 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
72595772 TTGAATGATG
* *
72595782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
72595821 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
72595862 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72595901 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72595940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
72595979 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72596006 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 74 0.45
40 77 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:72595969 original size:79 final size:80
Alignment explanation
Indices: 72595782--72596005 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
72595772 TTGAATGATG
* * * * *
72595782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
72595845 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
72595862 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
72595924 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
72595940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
72596005 G
66 G
72596006 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 35 0.28
79 56 0.44
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:72596027 original size:79 final size:79
Alignment explanation
Indices: 72595782--72596038 Score: 231
Period size: 79 Copynumber: 3.3 Consensus size: 79
72595772 TTGAATGATG
* * * * * *
72595782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGTA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** * *
72595844 TTTGTGCGAGATACTAAT
62 TTTGAACGAGTTACTAAA
* *
72595862 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
**
72595926 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
72595940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
72596004 TGAACGAG-TAGCTATA
64 TGAACGAGTTA-CTAAA
* *
72596020 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
72596039 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
78 36 0.24
79 69 0.45
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:72600443 original size:42 final size:43
Alignment explanation
Indices: 72600339--72600462 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 43
72600329 TGATTTCATG
** * * *
72600339 TAAGACCACATCTGGGACGTTGGCATCG-ATTTGAGATTTACGTG
1 TAAGACCATGTCTAGGACATTGGCATCGTATTT--GATTTACGTA
*
72600383 TAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-CGTA
1 TAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTACGTA
* * *
72600425 TAAGACCCTGTCTAGGACAATGGCATTGATATTTGATT
1 TAAGACCATGTCTAGGACATTGGCATCG-TATTTGATT
72600463 ACATGTAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 27 0.39
43 14 0.20
44 25 0.36
45 4 0.06
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTACGTA
Found at i:72602217 original size:16 final size:16
Alignment explanation
Indices: 72602196--72602229 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
72602186 ATATATAGTT
72602196 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
72602212 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
72602228 AA
1 AA
72602230 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:72602488 original size:53 final size:53
Alignment explanation
Indices: 72602412--72602533 Score: 183
Period size: 53 Copynumber: 2.3 Consensus size: 53
72602402 TACTGTTACC
* **
72602412 GTTACTGTTACTGTTTCGAATTTGTTCTGATGAGGTACTCTGTGTACCGTACT
1 GTTACTGTTACTGTTCCGAATTTGTTCCAATGAGGTACTCTGTGTACCGTACT
*
72602465 GTTACTGTTATTGTTCC-AGATTTGTTCCAATGAGGTACTCTGTGTACCGTACT
1 GTTACTGTTACTGTTCCGA-ATTTGTTCCAATGAGGTACTCTGTGTACCGTACT
*
72602518 GCTACTGTTACTGTTC
1 GTTACTGTTACTGTTC
72602534 TGACTTCGGC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
52 1 0.02
53 61 0.98
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (53 bp):
GTTACTGTTACTGTTCCGAATTTGTTCCAATGAGGTACTCTGTGTACCGTACT
Found at i:72602670 original size:19 final size:19
Alignment explanation
Indices: 72602648--72602699 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
72602638 AAAGATCGAC
72602648 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAATTTAAT
** *
72602667 TGTTACTGTGT-ATCTAAT
1 TGTTACTGAATAATTTAAT
*
72602685 TTTTACTGAATAATT
1 TGTTACTGAATAATT
72602700 GACTGTTACT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50
Consensus pattern (19 bp):
TGTTACTGAATAATTTAAT
Found at i:72602778 original size:18 final size:18
Alignment explanation
Indices: 72602736--72602787 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
72602726 GATTGATACT
* *
72602736 GAATAACTGATTATTATT
1 GAATAATTGATTATTATC
*
72602754 GAATAATTGATTGTTATC
1 GAATAATTGATTATTATC
* *
72602772 GATTAATTGACTATTA
1 GAATAATTGATTATTA
72602788 CAAAATAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (18 bp):
GAATAATTGATTATTATC
Found at i:72604047 original size:10 final size:10
Alignment explanation
Indices: 72604032--72604059 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
72604022 GATTTTGGCT
72604032 TATGATTTGG
1 TATGATTTGG
72604042 TATGATTTGG
1 TATGATTTGG
72604052 TATGATTT
1 TATGATTT
72604060 ATAAGCATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (10 bp):
TATGATTTGG
Found at i:72604428 original size:55 final size:55
Alignment explanation
Indices: 72604311--72604416 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
72604301 CTACAATTTA
* ** * *
72604311 AAGTCAGTCTCAAGCACGGCCCTGGCACACGGGCGTGTGGTTAGCCGTGTGACCC
1 AAGTCAGTCTCAACCACGGCCAAGGCACACGGGCATGTGCTTAGCCGTGTGACCC
* *
72604366 AAGTCAGTTTCGACCACGGCCAAGGCACACGGGCATGT-CTCTAGCCGTGTG
1 AAGTCAGTCTCAACCACGGCCAAGGCACACGGGCATGTGCT-TAGCCGTGTG
72604417 GTGCAAGTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 1 0.02
55 42 0.98
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (55 bp):
AAGTCAGTCTCAACCACGGCCAAGGCACACGGGCATGTGCTTAGCCGTGTGACCC
Found at i:72604946 original size:17 final size:17
Alignment explanation
Indices: 72604920--72604957 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
72604910 CATCATCTAA
*
72604920 AAAATCAATAAAATTAT
1 AAAATAAATAAAATTAT
*
72604937 AAAATAAATAAAGTTAT
1 AAAATAAATAAAATTAT
72604954 AAAA
1 AAAA
72604958 ATATTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAATAAATAAAATTAT
Found at i:72612134 original size:17 final size:17
Alignment explanation
Indices: 72612093--72612145 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 17
72612083 TAATTCTAAT
72612093 AATAATAATAAAATAAAA
1 AATAA-AATAAAATAAAA
72612111 AATAAAATAGAAATAACAA
1 AATAAAATA-AAATAA-AA
*
72612130 AA-AAATTTAAAATAAA
1 AATAAA-ATAAAATAAA
72612146 TTTAAAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.16
18 20 0.65
19 6 0.19
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (17 bp):
AATAAAATAAAATAAAA
Found at i:72612223 original size:22 final size:22
Alignment explanation
Indices: 72612198--72612240 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
72612188 AAAATTTGTA
*
72612198 AAATAAAAATAAATAATATAAC
1 AAATAAAAATAAATAAAATAAC
*
72612220 AAATAATAATAAATAAAATAA
1 AAATAAAAATAAATAAAATAA
72612241 AATAGAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
AAATAAAAATAAATAAAATAAC
Found at i:72612249 original size:15 final size:15
Alignment explanation
Indices: 72612198--72612252 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
72612188 AAAATTTGTA
72612198 AAATAAAAATAAATAAT
1 AAAT-AAAAT-AATAAT
*
72612215 ATAA-CAAATAATAAT
1 A-AATAAAATAATAAT
72612230 AAATAAAATAA-AAT
1 AAATAAAATAATAAT
72612244 AGAATAAAA
1 A-AATAAAA
72612253 GGGGATGGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 6 0.18
15 20 0.61
16 4 0.12
17 1 0.03
18 2 0.06
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAAAATAATAAT
Found at i:72612249 original size:22 final size:21
Alignment explanation
Indices: 72612196--72612250 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
72612186 AAAAAATTTG
*
72612196 TAAAATAAA-AATAAATAATA
1 TAAAATAAATAATAAATAAAA
72612216 TAACAA-ATAATAATAAATAAAA
1 TAA-AATA-AATAATAAATAAAA
72612238 TAAAATAGAATAA
1 TAAAATA-AATAA
72612251 AAGGGGATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 19 0.66
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAAATAAATAATAAATAAAA
Found at i:72614544 original size:47 final size:46
Alignment explanation
Indices: 72614470--72614694 Score: 235
Period size: 47 Copynumber: 4.8 Consensus size: 46
72614460 GGTTATTGTG
*
72614470 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACATCGAGACA-
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACATCGAGACAT
* *
72614516 AGTCCTAGTGTAAGACATGTCTGGGACAT-GCATC-AGCCTCGAGACGT
1 AG-CC-AGTGTAAGACATGTCTGGGACATGGCATCGA-CATCGAGACAT
* * * *
72614563 AAGCCAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGAGATGAT
1 -AGCCAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGA-CAT
* * * *
72614610 AGTCAGTGTAAGACAATGTCTAGGACATGGCATCGAC-TTGAGATAT
1 AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGACATCGAGACAT
72614656 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
1 -AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACA
72614695 CCTTACCCCA
Statistics
Matches: 152, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 64 0.42
47 68 0.45
48 19 0.12
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGACATCGAGACAT
Found at i:72615838 original size:21 final size:22
Alignment explanation
Indices: 72615799--72615840 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
72615789 GTAAAATTAA
72615799 TCACACGGGCGTGTTGCCCCTT
1 TCACACGGGCGTGTTGCCCCTT
72615821 TCACACGGGCGT-TTGCCCCT
1 TCACACGGGCGTGTTGCCCCT
72615841 GTGTCAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.10, C:0.38, G:0.26, T:0.26
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCCTT
Found at i:72617221 original size:14 final size:14
Alignment explanation
Indices: 72617203--72617255 Score: 65
Period size: 13 Copynumber: 3.8 Consensus size: 14
72617193 TGAAAAATTA
72617203 GAAAAATAAAAGGAT
1 GAAAAATAAAA-GAT
*
72617218 -AAAATTAGAAAGAT
1 GAAAAATA-AAAGAT
72617232 GAAAAAT-AAAGAT
1 GAAAAATAAAAGAT
72617245 GAAAAATAAAA
1 GAAAAATAAAA
72617256 AAATAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 13 0.39
14 12 0.36
15 8 0.24
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
GAAAAATAAAAGAT
Found at i:72618229 original size:26 final size:25
Alignment explanation
Indices: 72618195--72618263 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
72618185 ACACACCGCA
* *
72618195 GCTC-TTATGAGCGTCCCATTATATG
1 GCTCTTTATGAGCTTCCCATTA-AAG
* *
72618220 TCTCTTTATGAGCTTCCTGATTAAAG
1 GCTCTTTATGAGCTTCC-CATTAAAG
72618246 GCTCTTTATGAGCTTCCC
1 GCTCTTTATGAGCTTCCC
72618264 GATATGGCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.08
26 29 0.81
27 4 0.11
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (25 bp):
GCTCTTTATGAGCTTCCCATTAAAG
Found at i:72618429 original size:25 final size:25
Alignment explanation
Indices: 72618363--72618486 Score: 90
Period size: 25 Copynumber: 4.8 Consensus size: 25
72618353 GCTTCTTGAT
*
72618363 TATGGCTCTTATGAGCTTCCCGTTA
1 TATGGCTCATATGAGCTTCCCGTTA
** * ** *
72618388 TACAGCCCGGATAAGCTTCCCGTTA
1 TATGGCTCATATGAGCTTCCCGTTA
* *
72618413 CATGGCTCATATGAGCTTCCTGTTA
1 TATGGCTCATATGAGCTTCCCGTTA
* *
72618438 TATGGCTTGAGA-GAGGGCTTCCCGTT-
1 TATGGC-TCATATGA--GCTTCCCGTTA
72618464 TATGTGCTCATATGAGCATTCCC
1 TATG-GCTCATATGAGC-TTCCC
72618487 AAATATGAAT
Statistics
Matches: 73, Mismatches: 20, Indels: 11
0.70 0.19 0.11
Matches are distributed among these distances:
25 45 0.62
26 15 0.21
27 13 0.18
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (25 bp):
TATGGCTCATATGAGCTTCCCGTTA
Found at i:72619624 original size:13 final size:13
Alignment explanation
Indices: 72619606--72619630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72619596 GGCATATGGA
72619606 TAGCCCGTGTGGC
1 TAGCCCGTGTGGC
72619619 TAGCCCGTGTGG
1 TAGCCCGTGTGG
72619631 AAATGGCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (13 bp):
TAGCCCGTGTGGC
Found at i:72620188 original size:25 final size:25
Alignment explanation
Indices: 72620160--72620212 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
72620150 GAGATTTCAA
*
72620160 TTAATCAACCTAGAGTCTGTTGTTC
1 TTAATCAACCTAGAGTCAGTTGTTC
72620185 TTAATCAACCTAGAGTCAGTTGTTC
1 TTAATCAACCTAGAGTCAGTTGTTC
72620210 TTA
1 TTA
72620213 CTCTCAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (25 bp):
TTAATCAACCTAGAGTCAGTTGTTC
Found at i:72621008 original size:35 final size:35
Alignment explanation
Indices: 72620969--72621048 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
72620959 GTCCAAACAT
* * *
72620969 AACATGTCAATGCTCATA-AGAGTTAATCCAACTGA
1 AACATGCCAATGCTCATACA-AGCTAATCCAACCGA
72621004 AACATGCCAATGCTCATACAAGCTAATCCAACCGA
1 AACATGCCAATGCTCATACAAGCTAATCCAACCGA
*
72621039 AACACGCCAA
1 AACATGCCAA
72621049 ACAGAGAGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 39 0.98
36 1 0.03
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (35 bp):
AACATGCCAATGCTCATACAAGCTAATCCAACCGA
Found at i:72624403 original size:25 final size:25
Alignment explanation
Indices: 72624374--72624423 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
72624364 CTTTAAATTA
* *
72624374 TTTTACATATTATTTGTTTTAAGCT
1 TTTTACATATTATATATTTTAAGCT
*
72624399 TTTTACATGTTATATATTTTAAGCT
1 TTTTACATATTATATATTTTAAGCT
72624424 CATACATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (25 bp):
TTTTACATATTATATATTTTAAGCT
Found at i:72625410 original size:255 final size:256
Alignment explanation
Indices: 72624980--72625458 Score: 710
Period size: 255 Copynumber: 1.9 Consensus size: 256
72624970 CCAAAATAAA
* * *
72624980 TTTTCTAAATAAGGTAATATTTTGGTGTTTGGAAATCTCGAGAAAATTGTGCCCTACGTGCTGGG
1 TTTTCTAAACAAGGCAATATTTTGGTGTTTGGAAATCTCGAGAAAATTGCGCCCTACGTGCTGGG
* * * * *
72625045 CTTCGATTTATCGTTTGCCCGAACAATCGAATATCCTTTTTAAACCTTCAATGCATAAGTTTGGG
66 CTTCGATTTATCGTTGGACCAAACAACCGAATATCCTTTTTAAACCTTCAATGCATAAGTTTGGA
* * *
72625110 AATCATGAGATAATTTTGGTATCGGAGGTTTGAAATATTGTGTCCTACGTGCTGGATGTGATATT
131 AATCATGAGATAATTTTGGTATCGAAAGTTTGAAATATCGTGTCCTACGTGCTGGATGTGATATT
* *
72625175 TTATTTCTTTGAAACAAGATAATCTTAATTGTTTCATACTATTGTATCTTTATTCGAGATT
196 TTATTTCTTCGAAACAAGAGAATCTTAATTGTTTCATACTATTGTATCTTTATTCGAGATT
* *
72625236 TTTTTTAAACAAGGCAATA-TTTGGTGTTTGGAAATTTCGAG-AAATTGCGCCCTACGTGCTGGG
1 TTTTCTAAACAAGGCAATATTTTGGTGTTTGGAAATCTCGAGAAAATTGCGCCCTACGTGCTGGG
* * * * ** * *
72625299 TTTTGATTTATCGTTGGACTAAACGACCGAATATCCTTTTTAAATTTTTAATGCATGAGTTTTGG
66 CTTCGATTTATCGTTGGACCAAACAACCGAATATCCTTTTTAAACCTTCAATGCATAAG-TTTGG
* *
72625364 AAATCATGAGATGATTTTGGTATCGAAAGTTTGAAATATCGTGTCCTACGTGTTGGATGTGATAT
130 AAATCATGAGATAATTTTGGTATCGAAAGTTTGAAATATCGTGTCCTACGTGCTGGATGTGATAT
72625429 TTTATTTCTTCGAAACAAGAGAATCTTAAT
195 TTTATTTCTTCGAAACAAGAGAATCTTAAT
72625459 ATCCACTTCA
Statistics
Matches: 197, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
254 68 0.35
255 113 0.57
256 16 0.08
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.40
Consensus pattern (256 bp):
TTTTCTAAACAAGGCAATATTTTGGTGTTTGGAAATCTCGAGAAAATTGCGCCCTACGTGCTGGG
CTTCGATTTATCGTTGGACCAAACAACCGAATATCCTTTTTAAACCTTCAATGCATAAGTTTGGA
AATCATGAGATAATTTTGGTATCGAAAGTTTGAAATATCGTGTCCTACGTGCTGGATGTGATATT
TTATTTCTTCGAAACAAGAGAATCTTAATTGTTTCATACTATTGTATCTTTATTCGAGATT
Found at i:72631356 original size:3 final size:3
Alignment explanation
Indices: 72631348--72631388 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
72631338 CTTAATTCAA
72631348 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72631389 ACTCAATACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:72632282 original size:19 final size:19
Alignment explanation
Indices: 72632260--72632300 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
72632250 AAATTTTCAT
*
72632260 AAAATTAAAAAAAATTATA
1 AAAAATAAAAAAAATTATA
* *
72632279 AAAAATCATAAAAATTATA
1 AAAAATAAAAAAAATTATA
72632298 AAA
1 AAA
72632301 TTGATGTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATAAAAAAAATTATA
Found at i:72635034 original size:26 final size:26
Alignment explanation
Indices: 72635003--72635110 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
72634993 TGAAATGCCC
*
72635003 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
72635029 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
72635055 ATCATGGAATATTTACCGAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
72635081 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72635107 ATCA
1 ATCA
72635111 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72642017 original size:54 final size:54
Alignment explanation
Indices: 72641863--72642024 Score: 157
Period size: 54 Copynumber: 2.9 Consensus size: 54
72641853 AGTGCTATAC
* * *
72641863 CGGATGTTTCGCACACTAAGCGCCATCCTCGATACTTCGCACATTAAGTGCCATTT
1 CGGATGTTT-GCACACTAAGTGCCATCCTCAATACTTCGCACACT-AGTGCCATTT
* * * * ** *
72641919 CAGATGTTT-CACACATTAAGTGTCATCATCAATACCTCATACACT-GTGTCATTT
1 CGGATGTTTGCACAC--TAAGTGCCATCCTCAATACTTCGCACACTAGTGCCATTT
*
72641973 CGGATGTCTTGCACACTAAGTACCATCCTCAATACTTCGCACACTAAGTGCC
1 CGGATGT-TTGCACACTAAGTGCCATCCTCAATACTTCGCACACT-AGTGCC
72642025 GTTCGTTTGG
Statistics
Matches: 82, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
54 42 0.51
55 2 0.02
56 38 0.46
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (54 bp):
CGGATGTTTGCACACTAAGTGCCATCCTCAATACTTCGCACACTAGTGCCATTT
Found at i:72644632 original size:26 final size:26
Alignment explanation
Indices: 72644603--72644655 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
72644593 TCAAACATGC
72644603 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
72644629 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
72644655 A
1 A
72644656 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:72646173 original size:26 final size:26
Alignment explanation
Indices: 72646142--72646249 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
72646132 TGAAATGCCC
*
72646142 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
72646168 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
72646194 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72646220 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72646246 ATCA
1 ATCA
72646250 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72654682 original size:37 final size:37
Alignment explanation
Indices: 72654640--72654741 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
72654630 CTAATATTTT
72654640 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
72654677 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
72654720 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
72654742 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:72660877 original size:17 final size:16
Alignment explanation
Indices: 72660853--72660884 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
72660843 AGGGCACCTT
72660853 AAAAAAAAGAGAAAAG
1 AAAAAAAAGAGAAAAG
72660869 AAAAGAAAAGAGAAAA
1 AAAA-AAAAGAGAAAA
72660885 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAGAAAAG
Found at i:72661954 original size:73 final size:74
Alignment explanation
Indices: 72661834--72661989 Score: 242
Period size: 73 Copynumber: 2.1 Consensus size: 74
72661824 TTTCCTTTTT
*
72661834 TTTCAATTTATGCTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
72661899 CTGAGGTAA
66 CCGAGGTAA
* * *
72661908 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACG
1 TTTCAATTTATGCTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
72661972 CCGAGGTAT
66 CCGAGGTAA
*
72661981 TTTTAATTT
1 TTTCAATTT
72661990 CTTTTTTTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 57 0.76
74 18 0.24
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (74 bp):
TTTCAATTTATGCTTTTCAAAAAATCAACCCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
CCGAGGTAA
Found at i:72662091 original size:102 final size:101
Alignment explanation
Indices: 72661908--72662281 Score: 429
Period size: 102 Copynumber: 3.8 Consensus size: 101
72661898 GCTGAGGTAA
* * * *
72661908 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* * *
72661973 CGAGGTATTTTTAATTTCTTTTTTTTTCAATTTCTGC
66 TGAGGTATTTTCAATTTC-TTTTTTTTCAATTTATGC
* * *
72662010 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGC
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
72662075 TGAGGTATTTTCAATTTC-TGTTTTTCAATTTTTGCC
66 TGAGGTATTTTCAATTTCTTTTTTTTCAATTTATG-C
* *
72662111 TTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
72662174 TGAGGTATTCTCAATTTTCGTTTTTTT-AATTTATG-
66 TGAGGTATTTTCAA-TTTCTTTTTTTTCAATTTATGC
* * * *
72662209 TTTCAA-----------AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
72662263 TGAGGTATTTTCAATTTCT
66 TGAGGTATTTTCAATTTCT
72662282 GTCTTTCAAA
Statistics
Matches: 241, Mismatches: 26, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
88 4 0.02
89 55 0.23
98 5 0.02
99 57 0.24
100 25 0.10
101 21 0.09
102 74 0.31
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (101 bp):
TTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTTCTTTTTTTTCAATTTATGC
Found at i:72662553 original size:75 final size:74
Alignment explanation
Indices: 72662196--72662586 Score: 461
Period size: 75 Copynumber: 5.2 Consensus size: 74
72662186 AATTTTCGTT
* * * *
72662196 TTTTTAATTTATG-TTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
72662260 CGTTGAGGTA
65 CGCTGAGGTA
* * *
72662270 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
72662333 CGCTGAGGTA
65 CGCTGAGGTA
* *
72662343 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
72662406 CACTGAGATA
65 CGCTGAGGTA
* * *
72662416 TTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
1 TTTTC-AATT-TCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
72662481 CATGCTGAGGTA
63 CACGCTGAGGTA
* *
72662493 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCCA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
*
72662558 CACG-TCGAGGTC
63 CACGCT-GAGGTA
* *
72662570 CTTTCAAATTCTGTTTT
1 TTTTCAATTTCTGTTTT
72662587 TAATTTTTTT
Statistics
Matches: 275, Mismatches: 29, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
71 37 0.13
72 2 0.01
73 39 0.14
74 15 0.05
75 91 0.33
76 16 0.06
77 75 0.27
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:72662886 original size:75 final size:74
Alignment explanation
Indices: 72662677--72663066 Score: 517
Period size: 73 Copynumber: 5.3 Consensus size: 74
72662667 TTTCCATTTC
* *
72662677 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGA
1 TATTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
72662742 CACGCTGAGG
65 CACGCTGAGG
* * *
72662752 TAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGCGCCTCAAGA
1 TATTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
72662815 CACGTTGAGG
65 CACGCTGAGG
* *
72662825 TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-
1 TATTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
72662889 -ACGCTGAGG
65 CACGCTGAGG
* * * * *
72662898 TAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAAGTGAGTCGAGCCTTAAGA
1 TATTTTCAATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
72662961 CACGTTGAGG
65 CACGCTGAGG
*
72662971 TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TATTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
72663036 CA--CTGAGG
65 CACGCTGAGG
* *
72663044 TGTTTTCTATTTCTGTTCTTCAA
1 TATTTTCAATTTCTGTT-TTCAA
72663067 TTTCTGTGTT
Statistics
Matches: 275, Mismatches: 29, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
71 36 0.13
72 3 0.01
73 136 0.49
74 7 0.03
75 93 0.34
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (74 bp):
TATTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
ACGCTGAGG
Found at i:72662947 original size:146 final size:146
Alignment explanation
Indices: 72662677--72663044 Score: 628
Period size: 146 Copynumber: 2.5 Consensus size: 146
72662667 TTTCCATTTC
* * *
72662677 TATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--A
* * * *
72662742 CACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGCG
64 GACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTCGAG
72662807 CCTCAAGACACGTTGAGG
129 CCTCAAGACACGTTGAGG
*
72662825 TATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
72662890 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTCGAGCC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTCGAGCC
*
72662955 TTAAGACACGTTGAGG
131 TCAAGACACGTTGAGG
72662971 TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
*
72663036 CACTGAGGT
66 CGCTGAGGT
72663045 GTTTTCTATT
Statistics
Matches: 209, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
146 151 0.72
148 58 0.28
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (146 bp):
TATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTCGAGCC
TCAAGACACGTTGAGG
Found at i:72663172 original size:15 final size:14
Alignment explanation
Indices: 72663136--72663168 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72663126 CGCTGAGGTA
72663136 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
72663150 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
72663164 TTTTC
1 TTTTC
72663169 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:72663201 original size:92 final size:90
Alignment explanation
Indices: 72663038--72663515 Score: 402
Period size: 92 Copynumber: 5.3 Consensus size: 90
72663028 CCTCAAGACA
* * * * * *
72663038 CTGAGGTGTTTTCTATTTCTGTTCTTC-AATTTCTGTGTTTCAAAAAATCAGCTCATATTGCGAG
1 CTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCAAAAAATCAACTCATATTGCGAG
*
72663102 TGGTGAGTTGAGCCTTGACTCACACG
65 AGGTGAGTTGAGCCTTGACTCACACG
72663128 CTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCCAAAAAAATCAACTCATATTGCGA
1 CTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTT-C-AAAAAATCAACTCATATTGCGA
* * * **
72663193 GAGGTGAGTTCAG-CATCA-GGACACG
64 GAGGTGAGTTGAGCCTTGACTCACACG
* * * *
72663218 TTGAGGTATTTTCAATTTCTTTTTTTTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATTG
1 CTGAGGTATTTTCAAATTC---TGTTTTTCAAATTT-TGTTTTTC-AAAAAATCAACTCATATTG
* *
72663282 CGAGAGGTGAGTTGAGCC-TCAGGTCACACG
61 CGAGAGGTGAGTTGAGCCTTGA-CTCACACG
* * ** * *
72663312 CCGAGGTATTTTCAATTGATT-T-TTTTTAAAATTTATACTTTGC-AAAAATCAACTCATATTAC
1 CTGAGGTATTTTCAA---ATTCTGTTTTTCAAATTT-TGTTTTTCAAAAAATCAACTCATATTGC
* ** * **
72663374 GAGAGGTGAGTTGAGCCTCGGGTTACATA
62 GAGAGGTGAGTTGAGCCTTGACTCACACG
* * * *
72663403 CCGAGGTATTTTCAAAATCTGTTTTACAAATTTTG-TTTT--AAAAATCAACTCATATTGTGAGA
1 CTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCAAAAAATCAACTCATATTGCGAGA
* * **
72663465 AGTGAGTTGAGCCTTGGCTCACGTG
66 GGTGAGTTGAGCCTTGACTCACACG
* *
72663490 CTGAGCTATTTTCAATTTCTGTTTTT
1 CTGAGGTATTTTCAAATTCTGTTTTT
72663516 AATGTCTAGT
Statistics
Matches: 319, Mismatches: 52, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
87 61 0.19
88 5 0.02
89 2 0.01
90 61 0.19
91 64 0.20
92 81 0.25
93 25 0.08
94 18 0.06
97 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (90 bp):
CTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTGACTCACACG
Found at i:72663459 original size:270 final size:267
Alignment explanation
Indices: 72662973--72663472 Score: 616
Period size: 270 Copynumber: 1.9 Consensus size: 267
72662963 CGTTGAGGTA
*
72662973 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* * * * * * * * * *
72663038 CTGAGGTGTTTTCTATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAATCAGCTCATATTGCGAGT
66 CCGAGGTATTTTCAATTTCTGTTCTTAAATTTATCTGTTGCAAAAAATCAACTCATATTACGAGA
* * * * *
72663103 GGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTT
131 GGTGAGTTGAGCCTCGACTCACACACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTTT
*
72663168 CCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCATCAGGACACGTTGAGGTATTTTCAA
196 ---AAAAAATCAACTCATATTGCGAGAAGTGAGTTCAGCATCAGGACACGTTGAGGTATTTTCAA
72663233 TTTCTTTTTT
258 TTTCTTTTTT
* *
72663243 TTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTCAATTTATGTCTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
* *
72663307 ACACGCCGAGGTATTTTCAATTGAT-TTTTTTTAAAATTTATACT-TTGC-AAAAATCAACTCAT
63 ACA--CCGAGGTATTTTCAATT--TCTGTTCTT-AAATTTAT-CTGTTGCAAAAAATCAACTCAT
** * *
72663369 ATTACGAGAGGTGAGTTGAGCCTCGGGTTACATACCGAGGTATTTTCAAAATCTGTTTTACAAAT
122 ATTACGAGAGGTGAGTTGAGCCTCGACTCACACACCGAGGTATTTTCAAAATCTGTTTTACAAAT
*
72663434 TTTG-TTTT-AAAAATCAACTCATATTGTGAGAAGTGAGTT
187 TTTGTTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTT
72663473 GAGCCTTGGC
Statistics
Matches: 195, Mismatches: 26, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
269 2 0.01
270 85 0.44
272 3 0.02
274 18 0.09
275 76 0.39
276 10 0.05
277 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (267 bp):
TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
CCGAGGTATTTTCAATTTCTGTTCTTAAATTTATCTGTTGCAAAAAATCAACTCATATTACGAGA
GGTGAGTTGAGCCTCGACTCACACACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTTT
AAAAAATCAACTCATATTGCGAGAAGTGAGTTCAGCATCAGGACACGTTGAGGTATTTTCAATTT
CTTTTTT
Found at i:72663528 original size:87 final size:85
Alignment explanation
Indices: 72662994--72663578 Score: 389
Period size: 92 Copynumber: 6.6 Consensus size: 85
72662984 TGTCTTTCAA
* * * *
72662994 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACA--CTGAGGTGTTTTCTATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTCAATT
* * *
72663055 TCTGTTCTTCAATTTCTGTGTTT
65 TCTGTTTTTAAATTT-AGT-TTT
* * * * *
72663078 CAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAG-GTCACATGCTGAGGTATTTTCAA
* *
72663143 ATTCTGTTTTTCAAATTTTGTTTTT
63 TTTCTGTTTTT-AAATTTAG-TTTT
* * * *
72663168 CCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCATCAGG--ACACGTTGAGGTATTTTC
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTC
* *
72663231 AATTTCTTTTTTTTTTCAATTTATGTTTGT
61 AATTTC---TGTTTTTAAATTTA-GTTT-T
* *
72663261 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTCA
*
72663326 ATTGAT-TTTTTTTAAAATTTA-TACTTT
62 ATT--TCTGTTTTT-AAATTTAGT--TTT
* * * * *
72663353 GCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTTACATACCGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACATGCTGAGGTATTTTCAA
** * *
72663418 AATCTGTTTTACAAATTTTGTTTT
63 TTTCTGTTTT-TAAATTTAGTTTT
* * * * *
72663442 AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCACATGCTGAGGTATTTTCAATT
72663507 TCTGTTTTT-AATGTCTAGTTTT
65 TCTGTTTTTAAAT-T-TAGTTTT
* * ** *
72663529 AAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGC
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGG-TCACATGC
72663579 CGAGTAAATA
Statistics
Matches: 408, Mismatches: 61, Indels: 58
0.77 0.12 0.11
Matches are distributed among these distances:
85 3 0.01
86 37 0.09
87 70 0.17
88 38 0.09
89 4 0.01
90 60 0.15
91 66 0.16
92 92 0.23
93 17 0.04
94 20 0.05
96 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACATGCTGAGGTATTTTCAATTT
CTGTTTTTAAATTTAGTTTT
Found at i:72663655 original size:21 final size:21
Alignment explanation
Indices: 72663629--72663668 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72663619 TTTTATATCC
72663629 TTGAAGTTACAGTGAAGCTAA
1 TTGAAGTTACAGTGAAGCTAA
* *
72663650 TTGAAGTTGCAGTGGAGCT
1 TTGAAGTTACAGTGAAGCT
72663669 GATCGAGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (21 bp):
TTGAAGTTACAGTGAAGCTAA
Found at i:72664231 original size:30 final size:30
Alignment explanation
Indices: 72664195--72664293 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
72664185 TTAGCCTTTG
72664195 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
72664225 CCACCA-CAACCTCCACTAGCCACACTTGCT
1 CCACCACCAA-CTCCACTAGCCACACTTGCT
* *
72664255 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
72664285 CCACCACCA
1 CCACCACCA
72664294 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
29 3 0.05
30 58 0.92
31 2 0.03
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:72675108 original size:71 final size:69
Alignment explanation
Indices: 72675010--72675184 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
72675000 TTTTCAAGGG
* *
72675010 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
72675074 GTTTT
65 GTTTT
* ** * *
72675079 CAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
72675144 TGTTTT
64 TGTTTT
** * *
72675150 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
72675185 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 30 0.33
71 59 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:72675305 original size:72 final size:71
Alignment explanation
Indices: 72675184--72675349 Score: 226
Period size: 72 Copynumber: 2.3 Consensus size: 71
72675174 GAGTTAAGCC
** * *
72675184 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTAAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGC
72675248 TGAGGTA
65 TGAGGTA
* * *
72675255 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGT
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGC
72675320 TGAGGTA
65 TGAGGTA
* *
72675327 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
72675350 ACGTTGTTCA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
71 12 0.14
72 68 0.81
73 4 0.05
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:72675453 original size:140 final size:140
Alignment explanation
Indices: 72675282--72675909 Score: 1159
Period size: 140 Copynumber: 4.5 Consensus size: 140
72675272 TTAATTTCAA
*
72675282 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGTTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
72675347 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
72675412 TCAAAATCAG
131 TCAAAATCAG
*
72675422 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
72675487 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
72675552 TCAAAATCAG
131 TCAAAATCAG
*
72675562 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
72675627 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
72675692 TCAAAATCAG
131 TCAAAATCAG
72675702 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
72675767 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
72675832 TCAAAATCAG
131 TCAAAATCAG
*
72675842 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTTAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
72675906 TCAA
62 TCAA
72675910 AAAAAAAATT
Statistics
Matches: 475, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 2 0.00
140 445 0.94
142 22 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:72675765 original size:13 final size:13
Alignment explanation
Indices: 72675747--72675780 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
72675737 CGCTGAGGTA
*
72675747 TTTTCAATTTCTG
1 TTTTCAATTTATG
72675760 TTTTCAATTTATG
1 TTTTCAATTTATG
72675773 TTGTTCAA
1 TT-TTCAA
72675781 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:72675944 original size:81 final size:72
Alignment explanation
Indices: 72675829--72676054 Score: 258
Period size: 72 Copynumber: 3.0 Consensus size: 72
72675819 AATTTCTACT
* ** * * *
72675829 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
*
72675892 TTAATTTCTG
63 TCAATTTCTG
* *
72675902 TCTTTCAAAAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
72675967 AATTTCAATTTCTG
59 AATTTCAATTTCTG
*
72675981 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
72676046 ATTTCTG
66 ATTTCTG
72676053 TT
1 TT
72676055 CAAAATGAGT
Statistics
Matches: 134, Mismatches: 10, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
72 68 0.51
73 1 0.01
74 4 0.03
78 4 0.03
79 23 0.17
80 4 0.03
81 29 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:72675993 original size:72 final size:72
Alignment explanation
Indices: 72675914--72676054 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
72675904 TTTCAAAAAA
*
72675914 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
72675979 TGTTTTC
66 TGTTTTC
72675986 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
72676051 TGTT
66 TGTT
72676055 CAAAATGAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:72676065 original size:49 final size:49
Alignment explanation
Indices: 72676008--72676103 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
72675998 ATATTGCGAG
* *
72676008 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
72676057 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
72676104 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:72676158 original size:121 final size:121
Alignment explanation
Indices: 72675936--72676175 Score: 408
Period size: 121 Copynumber: 2.0 Consensus size: 121
72675926 ATATTGTGAG
* *
72675936 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
72676001 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTGGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
72676057 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
** * *
72676122 TTGCGAGAGGTGAGTGGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTT
66 TTGCGAGAAATGAGTGGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
72676176 GTCAAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 111 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (121 bp):
AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTGGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:72676181 original size:72 final size:72
Alignment explanation
Indices: 72676057--72676404 Score: 426
Period size: 72 Copynumber: 4.7 Consensus size: 72
72676047 TTTCTGTTCA
* * *
72676057 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
72676122 TTGCGAG
66 TTGCGAG
** * * *
72676129 AGGTGAGTGGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC-----AAAAATCAAC
*
72676194 TCATATTGCAAG
61 TCATATTGCGAG
* * * *
72676206 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT-TTTC--AAAAATCAACTC
72676271 ATATTGCGAG
63 ATATTGCGAG
** * * *
72676281 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
*
72676346 TTGTGAG
66 TTGCGAG
* * *
72676353 AAATGAGTTGAGCCTCGGGTCACACTGAGGTAATTTCAATTTCTGTTTTCAA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
72676405 TATTTTAAAT
Statistics
Matches: 239, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
72 110 0.46
74 4 0.02
75 62 0.26
77 60 0.25
78 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (72 bp):
AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAG
Found at i:72676333 original size:152 final size:149
Alignment explanation
Indices: 72676057--72676404 Score: 472
Period size: 152 Copynumber: 2.3 Consensus size: 149
72676047 TTTCTGTTCA
*
72676057 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
*
72676122 TTGCGAGAGGTGAGTGGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAA
66 TTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAA
72676187 AATCAACTCATATTGCAAG
131 AATCAACTCATATTGCAAG
* * * *
72676206 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGT-TTTC--AAAAATCAACTC
* * *
72676271 ATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTC-----
63 ATATTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * **
72676331 AAAATTCAACTTATATTGTGAG
128 AAAAATCAACTCATATTGCAAG
* ** * *
72676353 AAATGAGTTGAGCCTCGGGTCACACTGAGGTAATTTCAATTTCTGTTTTCAA
1 AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAA
72676405 TATTTTAAAT
Statistics
Matches: 176, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
144 2 0.01
146 4 0.02
147 57 0.32
149 42 0.24
150 4 0.02
152 67 0.38
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (149 bp):
AAATGAGTTGAACCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAGGTGAGTGGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAA
AATCAACTCATATTGCAAG
Found at i:72676834 original size:46 final size:46
Alignment explanation
Indices: 72676778--72676956 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
72676768 GGATATTTGG
72676778 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
72676824 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
* *
72676870 GGCATCCGAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
72676917 ACACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72676957 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 69 0.62
47 31 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:72676936 original size:93 final size:93
Alignment explanation
Indices: 72676777--72676949 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
72676767 GGGATATTTG
* * **
72676777 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
72676842 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
72676870 GGCATCCGAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
72676935 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
72676950 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72682095 original size:6 final size:6
Alignment explanation
Indices: 72682084--72682123 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
72682074 ATGTTTCATA
* * *
72682084 TATTTT TATTTT TGTTTT TATTTG TACTTT TATTTT TATT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATT
72682124 GTTTTTATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:72682778 original size:5 final size:5
Alignment explanation
Indices: 72682768--72682810 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
72682758 ATCAATCTGG
72682768 AAAAT AAAAT AAAAT AAAA- AACAAT AAAAT AAAAT -AAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAA
72682811 CTTAAAACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 6 0.17
5 27 0.77
6 2 0.06
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:72684303 original size:23 final size:23
Alignment explanation
Indices: 72684277--72684324 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
72684267 ATCTAGCATG
72684277 CATATGACCAAAAAAACCAGCAC
1 CATATGACCAAAAAAACCAGCAC
72684300 CATATGACCAAAAAAACCAGCAC
1 CATATGACCAAAAAAACCAGCAC
72684323 CA
1 CA
72684325 ATCAATACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.31, G:0.08, T:0.08
Consensus pattern (23 bp):
CATATGACCAAAAAAACCAGCAC
Found at i:72686160 original size:11 final size:11
Alignment explanation
Indices: 72686144--72686174 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
72686134 TGCGCATATG
72686144 TTATTTCATGC
1 TTATTTCATGC
72686155 TTATTTCATGC
1 TTATTTCATGC
72686166 TTATTTCAT
1 TTATTTCAT
72686175 TATTCTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (11 bp):
TTATTTCATGC
Found at i:72690148 original size:46 final size:43
Alignment explanation
Indices: 72690054--72690221 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 43
72690044 ATATCTATGT
* *
72690054 CGATGCCATGTCCCAGACATGGTCTTACACTGACACGTCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATGTCTCG-AGC
*
72690100 CGATGCGTGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC--ATGTCTCGA-GC
* * *
72690146 CGATGCATATCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA-T-GTCTCGA-GC
72690192 CGATGCTATGTCCCAGACATGTCTTACACT
1 CGATGC-ATGTCCCAGACATGTCTTACACT
72690222 AGCTCACAAT
Statistics
Matches: 107, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
44 13 0.12
45 15 0.14
46 57 0.53
47 22 0.21
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (43 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATGTCTCGAGC
Found at i:72690219 original size:93 final size:92
Alignment explanation
Indices: 72690054--72690221 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 92
72690044 ATATCTATGT
* * *
72690054 CGATGCCATGTCCCAGACATGGTCTTACACTGACACGTCTCGTAGCCGATGCGTGTCCCAGACAT
1 CGATGCCATATCCCAGACATGGTCTTACACTGACACGTCTCATAGCCGATGCATGTCCCAGACAT
72690119 GTCTTACACTGGCTTATGTCTCGAGGC
66 GTCTTACACTGGCTTATGTCTCGAGGC
*
72690146 CGATG-CATATCCCAGACAT-GTCTTACACTAGCACTCGTCTCA-ATGCCGATGCTATGTCCCAG
1 CGATGCCATATCCCAGACATGGTCTTACACT-G-ACACGTCTCATA-GCCGATGC-ATGTCCCAG
72690208 ACATGTCTTACACT
62 ACATGTCTTACACT
72690222 AGCTCACAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
90 10 0.15
91 15 0.22
92 21 0.31
93 22 0.32
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (92 bp):
CGATGCCATATCCCAGACATGGTCTTACACTGACACGTCTCATAGCCGATGCATGTCCCAGACAT
GTCTTACACTGGCTTATGTCTCGAGGC
Found at i:72692032 original size:52 final size:52
Alignment explanation
Indices: 72691967--72692070 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
72691957 AGACAGACAA
*
72691967 AACATTTCAGATCAATAAGGAATTAGC-GATATCACATAATATTAATACATAG
1 AACATTTCAGATCAATAAGGAATCA-CAGATATCACATAATATTAATACATAG
72692019 AACATTTCAGATCAATAAGGAATCACAGATATCACATAATATTAATACATAG
1 AACATTTCAGATCAATAAGGAATCACAGATATCACATAATATTAATACATAG
72692071 GTAATCATTG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 1 0.02
52 49 0.98
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (52 bp):
AACATTTCAGATCAATAAGGAATCACAGATATCACATAATATTAATACATAG
Found at i:72711790 original size:56 final size:58
Alignment explanation
Indices: 72711705--72711819 Score: 155
Period size: 56 Copynumber: 2.0 Consensus size: 58
72711695 GTCATTTTTT
*
72711705 ATTTTCATTTTGGAGAAAATCACACTCA-TTCCAAATGTCTT-CATTTCTCCATTTTCA
1 ATTTTCATTTTGGAGAAAACCACACTCATTTCCAAATGT-TTCCATTTCTCCATTTTCA
** *
72711762 ATTTT-ATTTTGGAGAAAACCACTTTCATTTCCAAATGTTTCCCATTTCTCTATTTTCA
1 ATTTTCATTTTGGAGAAAACCACACTCATTTCCAAATGTTT-CCATTTCTCCATTTTCA
72711820 CCATTTCTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
56 21 0.41
57 15 0.29
58 15 0.29
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (58 bp):
ATTTTCATTTTGGAGAAAACCACACTCATTTCCAAATGTTTCCATTTCTCCATTTTCA
Found at i:72713251 original size:17 final size:18
Alignment explanation
Indices: 72713229--72713263 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72713219 TGAATTGGGT
*
72713229 CGTGTGGG-CCAGACGGG
1 CGTGTGGGTCCACACGGG
72713246 CGTGTGGGTCCACACGGG
1 CGTGTGGGTCCACACGGG
72713264 TAGTCCACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.26, G:0.49, T:0.14
Consensus pattern (18 bp):
CGTGTGGGTCCACACGGG
Found at i:72713313 original size:31 final size:31
Alignment explanation
Indices: 72713241--72713313 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
72713231 TGTGGGCCAG
* **
72713241 ACGGGCGTGTGGGTCCACACGGGTAGTCCAC
1 ACGGGCGTGTGGGTCAACACGAATAGTCCAC
* * *
72713272 ATGGGTGTGTGGGTCAACACGAATAGTCCAT
1 ACGGGCGTGTGGGTCAACACGAATAGTCCAC
72713303 ACGGGCGTGTG
1 ACGGGCGTGTG
72713314 AGATTCTGGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.19, C:0.22, G:0.38, T:0.21
Consensus pattern (31 bp):
ACGGGCGTGTGGGTCAACACGAATAGTCCAC
Found at i:72715316 original size:47 final size:48
Alignment explanation
Indices: 72715262--72715361 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 48
72715252 GGTAGAAATG
*
72715262 ATGGTAATAGGAAACCTCATAATG-GAAAGTGAAGTACTTCTTATGTT
1 ATGGTAATAGGAAACCACATAATGAGAAAGTGAAGTACTTCTTATGTT
* ** **
72715309 ATGGTAATGGGAAACCACATAATGAGTTAGTGAAGTGTTTCTTATGTT
1 ATGGTAATAGGAAACCACATAATGAGAAAGTGAAGTACTTCTTATGTT
*
72715357 GTGGT
1 ATGGT
72715362 CAGCATAGGA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 22 0.49
48 23 0.51
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (48 bp):
ATGGTAATAGGAAACCACATAATGAGAAAGTGAAGTACTTCTTATGTT
Found at i:72721266 original size:12 final size:13
Alignment explanation
Indices: 72721242--72721268 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72721232 CAAGAATCCC
72721242 AAAAACATAAAAA
1 AAAAACATAAAAA
72721255 AAAAACATAAAAA
1 AAAAACATAAAAA
72721268 A
1 A
72721269 CAGGGCTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAAACATAAAAA
Found at i:72732236 original size:25 final size:25
Alignment explanation
Indices: 72732207--72732258 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
72732197 TGATATAATG
72732207 CTATTTACCAAGCCTCTTTGCCACC
1 CTATTTACCAAGCCTCTTTGCCACC
72732232 CTATTTACCAAGCCTCTTTGCCACC
1 CTATTTACCAAGCCTCTTTGCCACC
72732257 CT
1 CT
72732259 TACTTACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.40, G:0.08, T:0.33
Consensus pattern (25 bp):
CTATTTACCAAGCCTCTTTGCCACC
Found at i:72733131 original size:94 final size:91
Alignment explanation
Indices: 72732973--72733183 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 91
72732963 GTGCCGATGC
* *
72732973 CATGTCCCAGACATGGTCTTACACT-GACACATCTCATAGCCGATGCATGTCTCAGACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTAGACACATCTAATAGCCGATGCATATCTCAGACATGTCTT
* * *
72733037 ACACTGGCTTACGT-CTCGAGGCCAATG
65 ACACTAGCTTACATAAT-GAGGCCAATG
*
72733064 CATGTCCCAGACATGTCTTACACTAGA-AC-TCGTAATGTGGCCGATGCCATATC-CTAGACATG
1 CATGTCCCAGACATGTCTTACACTAGACACATC-TAA--TAGCCGATG-CATATCTC-AGACAT-
* * **
72733126 GTCTTACACTAGCTTTCATAATGTGGCTGATG
60 GTCTTACACTAGCTTACATAATGAGGCCAATG
72733158 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
72733184 CTCACACGAG
Statistics
Matches: 102, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
89 2 0.02
90 14 0.14
91 16 0.16
92 9 0.09
93 11 0.11
94 49 0.48
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGACACATCTAATAGCCGATGCATATCTCAGACATGTCTTA
CACTAGCTTACATAATGAGGCCAATG
Found at i:72733171 original size:47 final size:46
Alignment explanation
Indices: 72732923--72733186 Score: 193
Period size: 46 Copynumber: 5.6 Consensus size: 46
72732913 GTACCAATGC
* * * *
72732923 CATGTCCTAGACATGGTCTTACACAAGTTCTAGCAT-ATCTGTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATAATGTG-GCCGATG
*
72732972 CCATGTCCCAGACATGGTCTTACACTGACACATCTCAT-A----GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCATAATGTGGCCGATG
* * * * * *
72733018 CATGTCTCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGGCCGATG
** *
72733064 CATGTCCCAGACATGTCTTACACTAGAACTCGTAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCGATG
* * * *
72733110 CCATATCCTAGACATGGTCTTACACTAGCTTTCATAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATG
72733158 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
72733187 ACACGAGTGA
Statistics
Matches: 174, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 1 0.01
44 10 0.06
45 13 0.07
46 62 0.36
47 26 0.15
48 27 0.16
50 23 0.13
51 5 0.03
53 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCGATG
Found at i:72733185 original size:46 final size:46
Alignment explanation
Indices: 72733011--72733185 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
72733001 ACATCTCATA
* * * * *
72733011 GCCGATGCATGTCTCAGACATGTCTTACACTGGCTTACGT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAAT-GTG
* ***
72733057 GCCAATGCATGTCCCAGACATGTCTTACACTAGAACTCGTAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAATGTG
* * *
72733103 GCCGATGCCATATCCTAGACATGGTCTTACACTAGCTTTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTTCGTAATGTG
*
72733151 GCTGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
72733186 CACACGAGTG
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 55 0.51
47 25 0.23
48 27 0.25
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAATGTG
Found at i:72736889 original size:130 final size:129
Alignment explanation
Indices: 72736623--72736880 Score: 435
Period size: 130 Copynumber: 2.0 Consensus size: 129
72736613 ACATCTTCCT
*
72736623 TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGGACGACCCATG
1 TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCATG
*
72736688 ACCACGTTTACTTTTCATCAACCAAGTAATGCCAATAAAAATATCATTTACCCATGTTTTGCCC
66 ACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAAATATCATTTACCCATGTTTTGCCC
*
72736752 TTCATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAATGACCCAT
1 TT-ATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCAT
* **
72736817 GACCACGTTTACTTTTCATCAACCATGTAATATTAATAAAAGGATATCATTTACCCATGTTTTG
65 GACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAA--ATATCATTTACCCATGTTTTG
72736881 GGTTATGAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
129 2 0.02
130 97 0.81
132 21 0.17
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.30
Consensus pattern (129 bp):
TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCATG
ACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAAATATCATTTACCCATGTTTTGCCC
Found at i:72738480 original size:35 final size:36
Alignment explanation
Indices: 72738411--72738481 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
72738401 AATTGGAACT
*
72738411 TAACAATATGATTTCTTGATATTTGGGATGATTTGA
1 TAACAATATGATTTCTTGATATCTGGGATGATTTGA
72738447 TAACAATATGATTTCTTGAT-TCTGGGATGATTTGA
1 TAACAATATGATTTCTTGATATCTGGGATGATTTGA
72738482 AGTGTTTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 14 0.41
36 20 0.59
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (36 bp):
TAACAATATGATTTCTTGATATCTGGGATGATTTGA
Found at i:72746263 original size:47 final size:47
Alignment explanation
Indices: 72746190--72746416 Score: 212
Period size: 47 Copynumber: 4.9 Consensus size: 47
72746180 TGGGTAAAAT
* * *
72746190 GTCGATGCCATGTCCCAGATAAGGTCTTACACTGGCTCATATCTC-AA
1 GTCGATGCCATGTCCCAGA-CATGTCTTACACTGGCTCACATCTCGAA
* * *
72746237 GTCGATGCCATGTCCCAGGCATGGTCTTACACTGACT-ATCATCTCGTA
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCGAA
* * * * *
72746285 GCCGATG-CATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
* * ** * * *
72746331 GCCGATG-CATGTCCTAGACATGTCTTACACTAACCCCCATCTC-ACT
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGA-A
*
72746377 GTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACA
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACA
72746417 CAGGATTGAC
Statistics
Matches: 149, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 64 0.43
47 77 0.52
48 7 0.05
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
Found at i:72746328 original size:46 final size:45
Alignment explanation
Indices: 72746213--72746361 Score: 174
Period size: 46 Copynumber: 3.2 Consensus size: 45
72746203 CCCAGATAAG
* * * * * *
72746213 GTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGGCAT
1 GTCTTACACTGGCTTACATCTCGAGCCGATG-CATGTCCTAGACAT
*
72746259 GGTCTTACACTGAC-TATCATCTCGTAGCCGATGCATGTCCTAGACAT
1 -GTCTTACACTGGCTTA-CATCTCG-AGCCGATGCATGTCCTAGACAT
*
72746306 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACATCTCGA-GCCGATGCATGTCCTAGACAT
72746352 GTCTTACACT
1 GTCTTACACT
72746362 AACCCCCATC
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
45 1 0.01
46 50 0.56
47 31 0.35
48 7 0.08
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (45 bp):
GTCTTACACTGGCTTACATCTCGAGCCGATGCATGTCCTAGACAT
Found at i:72746383 original size:46 final size:46
Alignment explanation
Indices: 72746239--72746409 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
72746229 TATCTCAAGT
* * * *
72746239 CGATGCCATGTCCCAGGCATGGTCTTACACTGA-CTATCATCTCGTA-GC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAACCCA-CATCTCG-AGGC
** ** *
72746287 CGATGCATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCTAGACATGTCTTACACTAACCCACATCTCGAGGC
* * *
72746333 CGATGCATGTCCTAGACATGTCTTACACTAACCCCCATCTC-ACTGT
1 CGATGCATGTCCTAGACATGTCTTACACTAACCCACATCTCGA-GGC
*
72746379 CGATGCCATGTCCCAGACATGTCTTACACTA
1 CGATG-CATGTCCTAGACATGTCTTACACTA
72746410 GCTCACACAG
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.02
46 60 0.57
47 38 0.36
48 5 0.05
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTAACCCACATCTCGAGGC
Found at i:72746389 original size:93 final size:93
Alignment explanation
Indices: 72746189--72746416 Score: 246
Period size: 93 Copynumber: 2.4 Consensus size: 93
72746179 GTGGGTAAAA
* * * *
72746189 TGTCGATGCCATGTCCCAGATAAGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCA
1 TGTCGATGCCATGTCCCAGA-CATGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCA
* * * * *
72746254 GGCATGGTCTTACACTGACTATCATCTCG
65 GACATGGTCTTACACTAACCACCATCTCC
* * * * * *
72746283 TAGCCGATG-CATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCCT
1 T-GTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AAGCCGATGCCATGTCCC
*
72746346 AGACAT-GTCTTACACTAACCCCCATCTCAC
64 AGACATGGTCTTACACTAACCACCATCTC-C
*
72746376 TGTCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACA
1 TGTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACA
72746417 CAGGATTGAC
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
92 24 0.22
93 61 0.56
94 18 0.17
95 6 0.06
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (93 bp):
TGTCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAACCACCATCTCC
Found at i:72748437 original size:37 final size:37
Alignment explanation
Indices: 72748378--72748516 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
72748368 AGCTCAGACG
* * *
72748378 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
72748415 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72748452 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
72748489 TAATCTCCACATGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
72748517 TAGAGCTCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72748713 original size:47 final size:47
Alignment explanation
Indices: 72748635--72749144 Score: 806
Period size: 47 Copynumber: 10.6 Consensus size: 47
72748625 CCATTCGGGA
* * * * *
72748635 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
72748682 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72748729 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72748776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72748823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72748872 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT---C-----GGCC-ATTAGGC
*
72748928 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72748975 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72749022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72749069 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72749118 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
72749145 TATTCAAATA
Statistics
Matches: 436, Mismatches: 13, Indels: 28
0.91 0.03 0.06
Matches are distributed among these distances:
46 2 0.00
47 290 0.67
48 3 0.01
49 93 0.21
50 1 0.00
53 1 0.00
55 4 0.01
56 42 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.