Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 107 of 199
Found at i:30279703 original size:16 final size:16
Alignment explanation
Indices: 30279684--30279714 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30279674 AGTATAAATA
*
30279684 ATATATATCTAAGTAG
1 ATATATATATAAGTAG
30279700 ATATATATATAAGTA
1 ATATATATATAAGTA
30279715 AACTTGGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATATATATAAGTAG
Found at i:30279838 original size:21 final size:19
Alignment explanation
Indices: 30279814--30279852 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 19
30279804 ATAAATGGGT
30279814 AAATAATAAGGCAAATAATAA
1 AAATAATAA-GC-AATAATAA
30279835 AAATAA-AAGCAATAATAA
1 AAATAATAAGCAATAATAA
30279853 TAATGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.44
19 2 0.11
20 2 0.11
21 6 0.33
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (19 bp):
AAATAATAAGCAATAATAA
Found at i:30290643 original size:18 final size:19
Alignment explanation
Indices: 30290622--30290690 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 19
30290612 TATTCTTATA
*
30290622 TTTTTATAATTTAT-TAAT
1 TTTTTATAATTTATATAAG
*
30290640 TTTTTTTAATTTTATATAAG
1 TTTTTATAA-TTTATATAAG
30290660 TTTTTATAATATT-TATAA-
1 TTTTTATAAT-TTATATAAG
*
30290678 TATTTTATGATTT
1 T-TTTTATAATTT
30290691 TTCTTATAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
18 11 0.26
19 19 0.44
20 13 0.30
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTATAATTTATATAAG
Found at i:30290663 original size:20 final size:20
Alignment explanation
Indices: 30290622--30290676 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
30290612 TATTCTTATA
*
30290622 TTTTTATAA-TTTAT-TAAT
1 TTTTTATAATTTTATATAAG
*
30290640 TTTTTTTAATTTTATATAAG
1 TTTTTATAATTTTATATAAG
30290660 TTTTTATAATATTTATA
1 TTTTTATAAT-TTTATA
30290677 ATATTTTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.26
19 5 0.16
20 12 0.39
21 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTTATAATTTTATATAAG
Found at i:30290683 original size:20 final size:20
Alignment explanation
Indices: 30290619--30290683 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
30290609 TATTATTCTT
30290619 ATATTTTTAT-A-ATTTATTA
1 ATATTTTTATAATATTTA-TA
*
30290638 AT-TTTTTTTAAT-TTTAT-
1 ATATTTTTATAATATTTATA
30290655 ATAAGTTTTTATAATATTTATA
1 AT-A-TTTTTATAATATTTATA
30290677 ATATTTT
1 ATATTTT
30290684 ATGATTTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
17 2 0.05
18 7 0.19
19 7 0.19
20 13 0.35
21 6 0.16
22 2 0.05
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
ATATTTTTATAATATTTATA
Found at i:30290692 original size:9 final size:9
Alignment explanation
Indices: 30290574--30290692 Score: 82
Period size: 9 Copynumber: 12.8 Consensus size: 9
30290564 AGTTTGTATA
*
30290574 AATTTTTAA
1 AATTTTTAT
30290583 ATATTTTTA-
1 A-ATTTTTAT
30290592 ATATGTTTTAT
1 A-AT-TTTTAT
*
30290603 ATTTTTTAT
1 AATTTTTAT
* *
30290612 TATTCTTAT
1 AATTTTTAT
30290621 -ATTTTTAT
1 AATTTTTAT
30290629 AATTTATTA-
1 AATTT-TTAT
* *
30290638 ATTTTTTTT
1 AATTTTTAT
30290647 AATTTTATAT
1 AATTTT-TAT
30290657 AAGTTTTTAT
1 AA-TTTTTAT
*
30290667 AATATTTAT
1 AATTTTTAT
30290676 AATATTTTAT
1 AAT-TTTTAT
*
30290686 GATTTTT
1 AATTTTT
30290693 CTTATAAGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
8 9 0.10
9 43 0.48
10 32 0.36
11 5 0.06
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.66
Consensus pattern (9 bp):
AATTTTTAT
Found at i:30290699 original size:22 final size:22
Alignment explanation
Indices: 30290672--30290732 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
30290662 TTTATAATAT
*
30290672 TTATAATATTTTATGA-TTTTTC
1 TTATAA-ATTTTATAAGTTTTTC
*
30290694 TTATAAGTTTTATAAGTTTTTC
1 TTATAAATTTTATAAGTTTTTC
**
30290716 TTATAAAAATTATAAGT
1 TTATAAATTTTATAAGT
30290733 GTATATAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 7 0.21
22 26 0.79
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (22 bp):
TTATAAATTTTATAAGTTTTTC
Found at i:30294015 original size:29 final size:29
Alignment explanation
Indices: 30293968--30294039 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
30293958 CTTCAAAAAA
*
30293968 TATACATATATACCCACATACTTT-TTTT
1 TATAAATATATACCCACATACTTTATTTT
** *
30293996 TATAATATATATACGTACATATTTTAATTTT
1 TATAA-ATATATACCCACATACTTT-ATTTT
*
30294027 TGTAAATATATAC
1 TATAAATATATAC
30294040 ATACTTATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.11
29 16 0.44
30 8 0.22
31 8 0.22
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (29 bp):
TATAAATATATACCCACATACTTTATTTT
Found at i:30294577 original size:71 final size:71
Alignment explanation
Indices: 30294461--30294598 Score: 233
Period size: 71 Copynumber: 1.9 Consensus size: 71
30294451 CTTTTCAAAT
*
30294461 TCAAGTTTTAAACAATCTCGAGAATTAAAAAGAGATCGTGTCCTAACCTACTGGGCATGATCCCT
1 TCAAGTTTTAAACAATCTCGAGAATCAAAAAGAGATCGTGTCCTAACCTACTGGGCATGATCCCT
30294526 TTCTTC
66 TTCTTC
* *
30294532 TCAAGTTTTAAACAATCTCGGGAATCAAGAAA-AGATCGTGTCCTAACTTACTGGGCATGATCCC
1 TCAAGTTTTAAACAATCTCGAGAATCAA-AAAGAGATCGTGTCCTAACCTACTGGGCATGATCCC
30294596 TTT
65 TTT
30294599 TTTAAATCCG
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 60 0.95
72 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
TCAAGTTTTAAACAATCTCGAGAATCAAAAAGAGATCGTGTCCTAACCTACTGGGCATGATCCCT
TTCTTC
Found at i:30294942 original size:22 final size:22
Alignment explanation
Indices: 30294915--30294959 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
30294905 TCGTGGACCA
*
30294915 AAATCGTTGTTTTAATAA-AATC
1 AAATCGTT-TATTAATAACAATC
30294937 AAATCGTTTATTAATAACAATC
1 AAATCGTTTATTAATAACAATC
30294959 A
1 A
30294960 CTTTTTGACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (22 bp):
AAATCGTTTATTAATAACAATC
Found at i:30302672 original size:3 final size:3
Alignment explanation
Indices: 30302664--30302703 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
30302654 AGATAAGTAG
30302664 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
30302704 AATTGCCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:30303655 original size:17 final size:16
Alignment explanation
Indices: 30303630--30303666 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
30303620 AATCTACTGC
*
30303630 CTTTTCTTTGTTTCTTT
1 CTTTCCTTTGTTTC-TT
30303647 CTTTCCTTTGTTTCTT
1 CTTTCCTTTGTTTCTT
30303663 CTTT
1 CTTT
30303667 GCAGGTGACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (16 bp):
CTTTCCTTTGTTTCTT
Found at i:30305725 original size:8 final size:8
Alignment explanation
Indices: 30305706--30305746 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
30305696 ACTTTACTTT
30305706 ATATAA-A
1 ATATAATA
30305713 ATATAATA
1 ATATAATA
30305721 ATATAATA
1 ATATAATA
30305729 ATATAAT-
1 ATATAATA
*
30305736 ATATAAAA
1 ATATAATA
30305744 ATA
1 ATA
30305747 AAACTTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
7 12 0.39
8 19 0.61
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
ATATAATA
Found at i:30305747 original size:13 final size:14
Alignment explanation
Indices: 30305705--30305747 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
30305695 TACTTTACTT
30305705 TATATAAAATATAA
1 TATATAAAATATAA
30305719 TAATATAATAATATAA
1 T-ATATAA-AATATAA
30305735 TATATAAAA-ATAA
1 TATATAAAATATAA
30305748 AACTTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 12 0.44
16 8 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TATATAAAATATAA
Found at i:30306958 original size:15 final size:15
Alignment explanation
Indices: 30306940--30306971 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
30306930 GATAGAGATG
30306940 TACTTTCAAGGGTTT
1 TACTTTCAAGGGTTT
30306955 TACTTTCAAGGGTTT
1 TACTTTCAAGGGTTT
30306970 TA
1 TA
30306972 TACTTCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47
Consensus pattern (15 bp):
TACTTTCAAGGGTTT
Found at i:30307504 original size:31 final size:31
Alignment explanation
Indices: 30307465--30307534 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
30307455 TCCTCAAATG
*
30307465 CAAG-CAATGTGAACCATTATAGTTTACATA
1 CAAGACAATGTGAACCATTATAGTATACATA
*
30307495 CAAGACAATGTGAACCATTATAGTATACATG
1 CAAGACAATGTGAACCATTATAGTATACATA
30307526 CAAGACAAT
1 CAAGACAAT
30307535 CTCCTTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
30 4 0.11
31 33 0.89
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (31 bp):
CAAGACAATGTGAACCATTATAGTATACATA
Found at i:30315535 original size:16 final size:15
Alignment explanation
Indices: 30315516--30315548 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
30315506 GTTTACATGT
*
30315516 AAAAGGTTTTACGGA
1 AAAAAGTTTTACGGA
30315531 AAAAAGTTTTACGGA
1 AAAAAGTTTTACGGA
30315546 AAA
1 AAA
30315549 TGCTTTCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24
Consensus pattern (15 bp):
AAAAAGTTTTACGGA
Found at i:30315870 original size:16 final size:15
Alignment explanation
Indices: 30315849--30315879 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
30315839 ATATTTAGTC
30315849 ATATAATAAATTATAA
1 ATATAATAAA-TATAA
30315865 ATATAATAAATATAA
1 ATATAATAAATATAA
30315880 TTTATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAATAAATATAA
Found at i:30315875 original size:9 final size:9
Alignment explanation
Indices: 30315849--30315880 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
30315839 ATATTTAGTC
30315849 ATATAATAA
1 ATATAATAA
30315858 AT-T-ATAA
1 ATATAATAA
30315865 ATATAATAA
1 ATATAATAA
30315874 ATATAAT
1 ATATAAT
30315881 TTATTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.29
8 2 0.10
9 13 0.62
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
ATATAATAA
Found at i:30315879 original size:22 final size:22
Alignment explanation
Indices: 30315854--30315897 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
30315844 TAGTCATATA
30315854 ATAAATTATAA-ATATAATAAAT
1 ATAAATTATAATAT-TAATAAAT
* *
30315876 ATAATTTATTATATTAATAAAT
1 ATAAATTATAATATTAATAAAT
30315898 TATTTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAATTATAATATTAATAAAT
Found at i:30315912 original size:20 final size:22
Alignment explanation
Indices: 30315853--30315913 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 22
30315843 TTAGTCATAT
30315853 AATA-AATTATAA-ATA-TAATA
1 AATATAATT-TAATATATTAATA
*
30315873 AATATAATTTATTATATTAATA
1 AATATAATTTAATATATTAATA
*
30315895 AAT-T-ATTTAATATTTTAAT
1 AATATAATTTAATATATTAAT
30315914 TTTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 19 0.54
21 8 0.23
22 8 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATATAATTTAATATATTAATA
Found at i:30315943 original size:16 final size:16
Alignment explanation
Indices: 30315924--30315957 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
30315914 TTTATTTTAT
30315924 TAATAAATTTTAAA-AA
1 TAAT-AATTTTAAATAA
30315940 TAATAATTTTAAATAA
1 TAATAATTTTAAATAA
30315956 TA
1 TA
30315958 TTATTCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATTTTAAATAA
Found at i:30318756 original size:22 final size:22
Alignment explanation
Indices: 30318731--30318786 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
30318721 AACTGTTTGG
**
30318731 TGACATCACGATGTAGAAGAGA
1 TGACATCACGACATAGAAGAGA
*
30318753 TGACATTACGACATAGAAGAGA
1 TGACATCACGACATAGAAGAGA
*
30318775 TGACACCACGAC
1 TGACATCACGAC
30318787 TTTAGACTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (22 bp):
TGACATCACGACATAGAAGAGA
Found at i:30319125 original size:12 final size:12
Alignment explanation
Indices: 30319110--30319134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30319100 TTAATTCTCA
30319110 AGTCATTTCTAT
1 AGTCATTTCTAT
30319122 AGTCATTTCTAT
1 AGTCATTTCTAT
30319134 A
1 A
30319135 CTCAATGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (12 bp):
AGTCATTTCTAT
Found at i:30322609 original size:21 final size:20
Alignment explanation
Indices: 30322585--30322632 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
30322575 CTAAGAAATA
30322585 AAAATAAAACAAAAAAAAAAG
1 AAAATAAAA-AAAAAAAAAAG
* * *
30322606 AAAACTGAAAAGAAAATAAAG
1 AAAA-TAAAAAAAAAAAAAAG
30322627 AAAATA
1 AAAATA
30322633 GATCAGTGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.79, C:0.04, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAATAAAAAAAAAAAAAAG
Found at i:30324121 original size:3 final size:3
Alignment explanation
Indices: 30324089--30324161 Score: 53
Period size: 3 Copynumber: 24.3 Consensus size: 3
30324079 AATAAGACTC
* * * * *
30324089 ATA ATC ATA AAA ATA ATA AGA CTA AGTA ATA ATA AT- ATA AGA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
30324133 ATA ATAA ATGA A-A ATA ATA ATA ATA ATA A
1 ATA AT-A AT-A ATA ATA ATA ATA ATA ATA A
30324162 CTAAAAAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
2 6 0.11
3 41 0.75
4 8 0.15
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:30324135 original size:13 final size:13
Alignment explanation
Indices: 30324119--30324152 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
30324109 ACTAAGTAAT
30324119 AATAATATAA-GAA
1 AATAATA-AATGAA
30324132 AATAATAAATGAA
1 AATAATAAATGAA
30324145 AATAATAA
1 AATAATAA
30324153 TAATAATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.10
13 18 0.90
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (13 bp):
AATAATAAATGAA
Found at i:30324135 original size:16 final size:16
Alignment explanation
Indices: 30324098--30324154 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
30324088 CATAATCATA
*
30324098 AAAATAATAAGACTAAG
1 AAAATAATAATA-TAAG
*
30324115 -TAATAATAATATAAG
1 AAAATAATAATATAAG
30324130 AAAATAATAA-AT--G
1 AAAATAATAATATAAG
30324143 AAAATAATAATA
1 AAAATAATAATA
30324155 ATAATAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 11 0.31
14 1 0.03
15 6 0.17
16 17 0.49
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAATAATAATATAAG
Found at i:30324247 original size:24 final size:22
Alignment explanation
Indices: 30324220--30324307 Score: 65
Period size: 24 Copynumber: 3.8 Consensus size: 22
30324210 AGAACTAAAA
30324220 ATAATAACAATAAAAATGATAGTG
1 ATAATAA-AATAAAAAT-ATAGTG
30324244 ATAATAAAACTAAGAAATATAG-G
1 ATAATAAAA-TAA-AAATATAGTG
* *
30324267 AATAATAAATATAATAATA-AAT-
1 -ATAATAAA-ATAAAAATATAGTG
30324289 ATAATAACAATAAATAATA
1 ATAATAA-AATAAA-AATA
30324308 ATGAAAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
21 11 0.20
22 6 0.11
23 7 0.13
24 25 0.46
25 5 0.09
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (22 bp):
ATAATAAAATAAAAATATAGTG
Found at i:30324283 original size:3 final size:3
Alignment explanation
Indices: 30324267--30324335 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
30324257 GAAATATAGG
*
30324267 AAT AAT AA- ATAT AAT AAT AA- ATAT AAT AAC AAT AAAT AAT AAT GAA-
1 AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT AAT -AAT AAT AAT -AAT
* *
30324313 AAT AAT AAG AAT AAG AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
30324336 ATAAAAAGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 4 0.08
3 42 0.79
4 7 0.13
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:30324284 original size:12 final size:12
Alignment explanation
Indices: 30324267--30324338 Score: 67
Period size: 12 Copynumber: 5.9 Consensus size: 12
30324257 GAAATATAGG
30324267 AATAATAAATAT
1 AATAATAAATAT
30324279 AATAATAAATAT
1 AATAATAAATAT
* *
30324291 AATAACAATAAAT
1 AATAATAA-ATAT
30324304 AATAATGAAA-AT
1 AATAAT-AAATAT
* *
30324316 AATAA-GAATAAG
1 AATAATAAAT-AT
30324328 AATAATAAATA
1 AATAATAAATA
30324339 AAAAGAAACA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
10 2 0.04
12 33 0.67
13 12 0.24
14 2 0.04
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.26
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:30328032 original size:11 final size:11
Alignment explanation
Indices: 30327982--30328034 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
30327972 ATAAAAGCTC
30327982 TAAAATA-AAT
1 TAAAATAGAAT
30327992 TAAATATATGAAT
1 TAAA-ATA-GAAT
*
30328005 TCAAAATAGACT
1 T-AAAATAGAAT
*
30328017 CAAAATAGAAT
1 TAAAATAGAAT
30328028 TAAAATA
1 TAAAATA
30328035 ACCATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (11 bp):
TAAAATAGAAT
Found at i:30331264 original size:23 final size:24
Alignment explanation
Indices: 30331209--30331266 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
30331199 AACAAAAGAC
* * *
30331209 AAATTAAAATGTAAAAATTTAATTA
1 AAATAAAAATATAAAAA-TTAAATA
*
30331234 AAACAAAAATATAAAAA-TAAATA
1 AAATAAAAATATAAAAATTAAATA
30331257 AAATAAAAAT
1 AAATAAAAAT
30331267 GGCTAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 14 0.50
25 14 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (24 bp):
AAATAAAAATATAAAAATTAAATA
Found at i:30348810 original size:36 final size:36
Alignment explanation
Indices: 30348770--30348840 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
30348760 AGAGTTTGAA
*
30348770 ATAGAGTAAGGATAACTGCTCTGTAAGCACTACCAC
1 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCAC
30348806 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCA
1 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCA
30348841 GTAATTCATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (36 bp):
ATAGAGTAAGGATAACTGCTATGTAAGCACTACCAC
Found at i:30350437 original size:20 final size:20
Alignment explanation
Indices: 30350400--30350437 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
30350390 TCTGAAATTG
**
30350400 TTTTATTTATAAGTTTATCA
1 TTTTATTTATAAAATTATCA
30350420 TTTTATTTATAAAATTAT
1 TTTTATTTATAAAATTAT
30350438 TACTTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTTATTTATAAAATTATCA
Found at i:30350444 original size:20 final size:20
Alignment explanation
Indices: 30350401--30350444 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
30350391 CTGAAATTGT
** *
30350401 TTTATTTATAAGTTTATCAT
1 TTTATTTATAAAATTATCAC
*
30350421 TTTATTTATAAAATTATTAC
1 TTTATTTATAAAATTATCAC
30350441 TTTA
1 TTTA
30350445 ATAAATAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTATTTATAAAATTATCAC
Found at i:30353371 original size:18 final size:18
Alignment explanation
Indices: 30353324--30353381 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
30353314 AACAAGTGAG
* *
30353324 GAAAAAGAAAAAGAGAAT
1 GAAAGAGAAAAAGAGATT
30353342 GAAAGAGCAAAAAGAGATT
1 GAAAGAG-AAAAAGAGATT
* * *
30353361 GAGAGTGAAAAAGAAATT
1 GAAAGAGAAAAAGAGATT
30353379 GAA
1 GAA
30353382 GAAAGAAGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 18 0.55
19 15 0.45
ACGTcount: A:0.62, C:0.02, G:0.26, T:0.10
Consensus pattern (18 bp):
GAAAGAGAAAAAGAGATT
Found at i:30353395 original size:23 final size:22
Alignment explanation
Indices: 30353369--30353421 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
30353359 TTGAGAGTGA
*
30353369 AAAAGAAATT-GAAGAAAGAAGAG
1 AAAAGAAATTAGAA-AAAGAA-AC
30353392 AAAATG-AATTAGAAAAAGAAAC
1 AAAA-GAAATTAGAAAAAGAAAC
30353414 AAAAGAAA
1 AAAAGAAA
30353422 AAGACGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAGAAATTAGAAAAAGAAAC
Found at i:30358384 original size:20 final size:20
Alignment explanation
Indices: 30358343--30358386 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
30358333 TTAAATTGTT
* *
30358343 TTTTGAATTATTAGTCTTAA
1 TTTTGAATTAGTACTCTTAA
30358363 TTTTGAATTAGTACT-TTGAA
1 TTTTGAATTAGTACTCTT-AA
30358383 TTTT
1 TTTT
30358387 TATATAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (20 bp):
TTTTGAATTAGTACTCTTAA
Found at i:30362469 original size:44 final size:45
Alignment explanation
Indices: 30362402--30362486 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
30362392 TGAACATTAA
*
30362402 ATTTTATTTTTAATGATTTTTAAAGTGCTT-ATAACATTCTATAAT
1 ATTTTATTTATAATGATTTTTAAAGTG-TTCATAACATTCTATAAT
30362447 ATTTTATTTAT-ATGATTTTTAAAGTGTTCATAACATTCTA
1 ATTTTATTTATAATGATTTTTAAAGTGTTCATAACATTCTA
30362487 ATTCATAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
43 2 0.05
44 26 0.68
45 10 0.26
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (45 bp):
ATTTTATTTATAATGATTTTTAAAGTGTTCATAACATTCTATAAT
Found at i:30367625 original size:9 final size:9
Alignment explanation
Indices: 30367607--30367699 Score: 132
Period size: 9 Copynumber: 10.3 Consensus size: 9
30367597 TCAGTTGAAC
30367607 TAAATCGGT
1 TAAATCGGT
*
30367616 TAAGTCGGT
1 TAAATCGGT
*
30367625 TAAGTCGGT
1 TAAATCGGT
30367634 TAAATCGGT
1 TAAATCGGT
*
30367643 TAAATTGGT
1 TAAATCGGT
*
30367652 TAAGTCGGT
1 TAAATCGGT
*
30367661 TAAATCAGT
1 TAAATCGGT
30367670 TAAATCGGT
1 TAAATCGGT
*
30367679 TAAGTCGGT
1 TAAATCGGT
30367688 TAAATCGGT
1 TAAATCGGT
30367697 TAA
1 TAA
30367700 TTTTTAACCA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 74 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (9 bp):
TAAATCGGT
Found at i:30367637 original size:27 final size:27
Alignment explanation
Indices: 30367607--30367699 Score: 159
Period size: 27 Copynumber: 3.4 Consensus size: 27
30367597 TCAGTTGAAC
*
30367607 TAAATCGGTTAAGTCGGTTAAGTCGGT
1 TAAATCGGTTAAATCGGTTAAGTCGGT
*
30367634 TAAATCGGTTAAATTGGTTAAGTCGGT
1 TAAATCGGTTAAATCGGTTAAGTCGGT
*
30367661 TAAATCAGTTAAATCGGTTAAGTCGGT
1 TAAATCGGTTAAATCGGTTAAGTCGGT
30367688 TAAATCGGTTAA
1 TAAATCGGTTAA
30367700 TTTTTAACCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (27 bp):
TAAATCGGTTAAATCGGTTAAGTCGGT
Found at i:30367879 original size:12 final size:12
Alignment explanation
Indices: 30367862--30367886 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30367852 TACTAATTCG
30367862 GGTCGGTTAACC
1 GGTCGGTTAACC
30367874 GGTCGGTTAACC
1 GGTCGGTTAACC
30367886 G
1 G
30367887 AATGCACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:30381216 original size:28 final size:27
Alignment explanation
Indices: 30381159--30381310 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
30381149 TAAATTGTGC
*
30381159 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30381186 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30381214 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
30381241 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
30381269 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
30381296 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30381311 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:30381224 original size:55 final size:55
Alignment explanation
Indices: 30381159--30381310 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
30381149 TAAATTGTGC
*
30381159 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
30381214 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
30381269 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
30381311 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:30389894 original size:15 final size:15
Alignment explanation
Indices: 30389870--30389901 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
30389860 TATGCATGCA
*
30389870 AAATATAAAAGACAT
1 AAATACAAAAGACAT
30389885 AAATACAAAAGACAT
1 AAATACAAAAGACAT
30389900 AA
1 AA
30389902 CAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:30390937 original size:19 final size:19
Alignment explanation
Indices: 30390913--30390963 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
30390903 AAAGAAATTA
*
30390913 TTATTTATTTTTTTAATGT
1 TTATTTATCTTTTTAATGT
* *
30390932 TTATTTTATCTTTTTATTTT
1 TTA-TTTATCTTTTTAATGT
30390952 TTATTT-TCTTTT
1 TTATTTATCTTTT
30390964 CTTTTGGCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 6 0.21
19 6 0.21
20 16 0.57
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (19 bp):
TTATTTATCTTTTTAATGT
Found at i:30392089 original size:15 final size:16
Alignment explanation
Indices: 30392067--30392105 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
30392057 TGTTTGGTTC
30392067 GCTGTAAT-GAATAGA
1 GCTGTAATGGAATAGA
*
30392082 GGTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
30392098 GCTGTAAT
1 GCTGTAAT
30392106 AGTAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.36, C:0.05, G:0.31, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:30392151 original size:45 final size:44
Alignment explanation
Indices: 30392087--30392179 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 44
30392077 ATAGAGGTGT
*
30392087 AATGGAATAGAGCTGTAATAGTAATTTAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-A-TTAATGTGTTTGGTTGAATGG
*
30392132 AATGGAATAGAACTGTAATAGTATTATTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTAATGTGTTTGGTTGAATGG
30392176 AATG
1 AATG
30392180 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 4 0.09
44 20 0.44
45 21 0.47
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTAATGTGTTTGGTTGAATGG
Found at i:30392188 original size:39 final size:41
Alignment explanation
Indices: 30392087--30392191 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 41
30392077 ATAGAGGTGT
30392087 AATGGAATAGA-GCTGTAATAGTAATTTAATTGTTTGGTTG
1 AATGGAATAGATGCTGTAATAGTAATTTAATTGTTTGGTTG
* *
30392127 AATGGAATGGAATAGAACTGTAATAGT-A-TTATTGTGTTTGGTTG
1 AATGGAATAG-AT-G--CTGTAATAGTAATTTAAT-TGTTTGGTTG
*
30392171 AATGGAAT-GATGTTGTAATAG
1 AATGGAATAGATGCTGTAATAG
30392192 CATAAGGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
39 8 0.14
40 9 0.16
41 2 0.04
42 2 0.04
43 6 0.11
44 19 0.34
45 10 0.18
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (41 bp):
AATGGAATAGATGCTGTAATAGTAATTTAATTGTTTGGTTG
Found at i:30392401 original size:56 final size:56
Alignment explanation
Indices: 30392286--30392414 Score: 136
Period size: 56 Copynumber: 2.3 Consensus size: 56
30392276 AATAAGATTA
* * *
30392286 TTAATATAAATAATAAATATTTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATAAATAATTTAATAAAATTTTAACATAATTATTATT-AATATAAT
* * *
30392344 TTAATAAAA-AATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATAAATAATTTAATAAAATT-TTAACATAATTATTATTAATAT-AAT
* *
30392400 TTACTAAAATCATAA
1 TTAATAAAATAATAA
30392415 TATATAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
55 4 0.07
56 28 0.47
57 21 0.36
58 6 0.10
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (56 bp):
TTAATAAAATAATAAATAATTTAATAAAATTTTAACATAATTATTATTAATATAAT
Found at i:30395364 original size:474 final size:475
Alignment explanation
Indices: 30394461--30395388 Score: 1822
Period size: 474 Copynumber: 2.0 Consensus size: 475
30394451 ATATCATCGG
30394461 CTGATGTTAGCTTATTTGATGAAACATCTAATACTTGGAGGTTGACCAATTTTGATAGGTCTTCC
1 CTGATGTTAGCTTATTTGATGAAACATCTAATACTTGGAGGTTGACCAATTTTGATAGGTCTTCC
*
30394526 ATTTTTGCAATACCATTGTGGCTCAAGTATATTTCTTCTAGGGCATTGCATTCCTTGAAAACAAA
66 ATTTTTGCAATACCATTGTGGCTCAAGTATATTTCTTCTAAGGCATTGCATTCCTTGAAAACAAA
30394591 AAATCTAGAGAAAAACCTCATCCAAATATTACGACATTAAAATTTTTATGAGAACCAACATTTTT
131 AAATCTAGAGAAAAACCTCATCCAAATATTACGACATTAAAATTTTTATGAGAACCAACATTTTT
30394656 TAAGGTGCTATACCTCCAACCCTATCATAGATGTTAACTGGTTACTTTGCAAGCTAATCTTCTTG
196 TAAGGTGCTATACCTCCAACCCTATCATAGATGTTAACTGGTTACTTTGCAAGCTAATCTTCTTG
30394721 ATGCAGCTCATAAAGGTTAATCACTTTAATTCAGTTTCTTCCTAGCCACAGTTCTTGTAACTTTG
261 ATGCAGCTCATAAAGGTTAATCACTTTAATTCAGTTTCTTCCTAGCCACAGTTCTTGTAACTTTG
30394786 TAAAATTTTGCAAATTTTCCATCACCTAAGATACCAAGATCAGTGAAAGCAATTCACAAATTAGA
326 TAAAATTTTGCAAATTTTCCATCACCTAAGATACCAAGATCAGTGAAAGCAATTCACAAATTAGA
*
30394851 CCATGCTCAAGAAATTACTAATAACTGACCAATCTTACCCCCTACTTCAATACTGAAACAAAAAT
391 CCATGCTCAAGAAATTACTAATAACTAACCAATCTTACCCCCTACTTCAATACTGAAACAAAAAT
30394916 TGACAAAAAGCTTGATAGGT
456 TGACAAAAAGCTTGATAGGT
*
30394936 CTGATGTTTGCTTATTTGATGAAACATCTAATACTTGGAGGTTGACCAATTTTGATAGGTCTTCC
1 CTGATGTTAGCTTATTTGATGAAACATCTAATACTTGGAGGTTGACCAATTTTGATAGGTCTTCC
30395001 ATTTTTGCAATACCATTGTGGCTCAAGTATATTTCTTCTAAGGCATTGCATTCCTTGAAAACAAA
66 ATTTTTGCAATACCATTGTGGCTCAAGTATATTTCTTCTAAGGCATTGCATTCCTTGAAAACAAA
30395066 AAATCTAGAGAAAAACCTCATCCAAATATTACGACATTAAAATTTTTATGAGAACCAACATTTTT
131 AAATCTAGAGAAAAACCTCATCCAAATATTACGACATTAAAATTTTTATGAGAACCAACATTTTT
30395131 TAAGGTGCTATACCTCCAA-CCTATCATAGATGTTAACTGGTTACTTTGCAAGCTAATCTTCTTG
196 TAAGGTGCTATACCTCCAACCCTATCATAGATGTTAACTGGTTACTTTGCAAGCTAATCTTCTTG
30395195 ATGCAGCTCATAAAGGTTAATCACTTTAATTCAGTTTCTTCCTAGCCACAGTTCTTGTAACTTTG
261 ATGCAGCTCATAAAGGTTAATCACTTTAATTCAGTTTCTTCCTAGCCACAGTTCTTGTAACTTTG
30395260 TAAAATTTTGCAAATTTTCCATCACCTAAGATACCAAGATCAGTGAAAGCAATTCACAAATTAGA
326 TAAAATTTTGCAAATTTTCCATCACCTAAGATACCAAGATCAGTGAAAGCAATTCACAAATTAGA
30395325 CCATGCTCAAGAAATTACTAATAACTAACCAATCTTACCCCCTACTTCAATACTGAAACAAAAA
391 CCATGCTCAAGAAATTACTAATAACTAACCAATCTTACCCCCTACTTCAATACTGAAACAAAAA
30395389 GCTTATACCA
Statistics
Matches: 450, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
474 238 0.53
475 212 0.47
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (475 bp):
CTGATGTTAGCTTATTTGATGAAACATCTAATACTTGGAGGTTGACCAATTTTGATAGGTCTTCC
ATTTTTGCAATACCATTGTGGCTCAAGTATATTTCTTCTAAGGCATTGCATTCCTTGAAAACAAA
AAATCTAGAGAAAAACCTCATCCAAATATTACGACATTAAAATTTTTATGAGAACCAACATTTTT
TAAGGTGCTATACCTCCAACCCTATCATAGATGTTAACTGGTTACTTTGCAAGCTAATCTTCTTG
ATGCAGCTCATAAAGGTTAATCACTTTAATTCAGTTTCTTCCTAGCCACAGTTCTTGTAACTTTG
TAAAATTTTGCAAATTTTCCATCACCTAAGATACCAAGATCAGTGAAAGCAATTCACAAATTAGA
CCATGCTCAAGAAATTACTAATAACTAACCAATCTTACCCCCTACTTCAATACTGAAACAAAAAT
TGACAAAAAGCTTGATAGGT
Found at i:30395997 original size:19 final size:20
Alignment explanation
Indices: 30395957--30395999 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
30395947 GATAAAATGG
*
30395957 AGAAAAGAAACGTAAAGAGA
1 AGAAAAGAAACATAAAGAGA
*
30395977 AGAAAAGAAACAT-ACGAGA
1 AGAAAAGAAACATAAAGAGA
30395996 AGAA
1 AGAA
30396000 GAAGCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.65, C:0.07, G:0.23, T:0.05
Consensus pattern (20 bp):
AGAAAAGAAACATAAAGAGA
Found at i:30401412 original size:6 final size:6
Alignment explanation
Indices: 30401401--30401439 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
30401391 TATCATTTTT
30401401 CATTTC CATTTC CATTTC CATTTC CATTTC TCA-TTC CAT
1 CATTTC CATTTC CATTTC CATTTC CATTTC -CATTTC CAT
30401440 ACCATTTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 2 0.06
6 27 0.87
7 2 0.06
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (6 bp):
CATTTC
Found at i:30401830 original size:5 final size:5
Alignment explanation
Indices: 30401816--30401880 Score: 57
Period size: 5 Copynumber: 13.2 Consensus size: 5
30401806 TCACATTTAT
* *
30401816 ATTCA TTTCA ATTCA AAT-A A-TCA ATTCA ATTC- ATTCA A-TCA ACTTCTA
1 ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA A-TTC-A
30401864 ATTCA ATTCA ATGTCA A
1 ATTCA ATTCA AT-TCA A
30401881 AGTGCCAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
3 1 0.02
4 12 0.24
5 26 0.52
6 9 0.18
7 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (5 bp):
ATTCA
Found at i:30402517 original size:17 final size:17
Alignment explanation
Indices: 30402475--30402521 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
30402465 AATTTAATTT
30402475 TAATATAAAT-ATTCAA
1 TAATATAAATAATTCAA
30402491 T-ATGACTAAATAATTCAA
1 TAAT-A-TAAATAATTCAA
30402509 TAATATAAATAAT
1 TAATATAAATAAT
30402522 ATAAAATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 2 0.07
16 2 0.07
17 13 0.48
18 8 0.30
19 2 0.07
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (17 bp):
TAATATAAATAATTCAA
Found at i:30402820 original size:30 final size:31
Alignment explanation
Indices: 30402781--30402840 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
30402771 GGAGGTGGGA
* *
30402781 TGGGAAGGGAATACAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
30402812 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
30402841 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.38, C:0.02, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:30406748 original size:18 final size:20
Alignment explanation
Indices: 30406708--30406754 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
30406698 ATTATTATAA
*
30406708 TATAATATATATATACTTAT
1 TATAATATATATATAATTAT
30406728 TATAATATATAT-TAATT-T
1 TATAATATATATATAATTAT
30406746 TATAA-ATAT
1 TATAATATAT
30406755 CTTACCTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 6 0.23
19 4 0.15
20 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAATATATATATAATTAT
Found at i:30416485 original size:16 final size:16
Alignment explanation
Indices: 30416464--30416494 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30416454 ATAAATATTG
*
30416464 CTTTTTTTTTCTTTTT
1 CTTTTTTTATCTTTTT
30416480 CTTTTTTTATCTTTT
1 CTTTTTTTATCTTTT
30416495 GAAATGTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (16 bp):
CTTTTTTTATCTTTTT
Found at i:30422443 original size:6 final size:6
Alignment explanation
Indices: 30422402--30422441 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
30422392 TGTCAAGGAT
* *
30422402 AGGGGA AGGGGA AGGGGA AGGGGA AGGGAA AGGGAA AGGG
1 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGG
30422442 AAGATCGGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:30427486 original size:26 final size:26
Alignment explanation
Indices: 30427443--30427514 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
30427433 ATCTTCTCCG
*
30427443 AATTTTACCAAGGGTAAAATCGTCAA
1 AATTTTACCAAGGGTAAAATCATCAA
30427469 AATTTTACC-AGGGATAAAATCATCAA
1 AATTTTACCAAGGG-TAAAATCATCAA
* *
30427495 AACTTTACTAAGGGTAAAAT
1 AATTTTACCAAGGGTAAAAT
30427515 AGGGATGAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 4 0.10
26 33 0.80
27 4 0.10
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (26 bp):
AATTTTACCAAGGGTAAAATCATCAA
Found at i:30430939 original size:16 final size:17
Alignment explanation
Indices: 30430918--30430958 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
30430908 TCTCAAACAA
* *
30430918 AAATTTTAAG-TAAGTC
1 AAATTTTAAGAAAAGAC
30430934 AAA-TTTAAGAAAAGAC
1 AAATTTTAAGAAAAGAC
30430950 AAATTTTAA
1 AAATTTTAA
30430959 CCCAGCTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 6 0.29
16 10 0.48
17 5 0.24
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (17 bp):
AAATTTTAAGAAAAGAC
Found at i:30439941 original size:29 final size:29
Alignment explanation
Indices: 30439866--30439985 Score: 114
Period size: 31 Copynumber: 4.0 Consensus size: 29
30439856 GATTAGATCA
** * *
30439866 AAATTAAAGTTTCAAATATACATTTGAACC
1 AAATTAAAG-TTCATGTATACAATTGCACC
* * *
30439896 ACAATTAGAGTTTCATGTTTATAATTGCACC
1 A-AATTAAAG-TTCATGTATACAATTGCACC
*
30439927 AAATTAAAGTTCATGTATACAATTGCACATT
1 AAATTAAAGTTCATGTATACAATTGCAC--C
*
30439958 AAATCAAAGTTCATGTATACAATTGCAC
1 AAATTAAAGTTCATGTATACAATTGCAC
30439986 ATTAAATCAA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
29 17 0.23
30 8 0.11
31 50 0.67
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTCATGTATACAATTGCACC
Found at i:30439970 original size:31 final size:31
Alignment explanation
Indices: 30439927--30440007 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
30439917 TAATTGCACC
*
30439927 AAATTAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATACAATTGCACATT
30439958 AAATCAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATACAATTGCACATT
*
30439989 AAATCAAAGGTCATGTATA
1 AAATCAAAGTTCATGTATA
30440008 ATTTTGAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (31 bp):
AAATCAAAGTTCATGTATACAATTGCACATT
Found at i:30440488 original size:17 final size:17
Alignment explanation
Indices: 30440468--30440565 Score: 71
Period size: 17 Copynumber: 5.8 Consensus size: 17
30440458 ATTTTAATAG
30440468 ATTTAATATTTAGT-TTA
1 ATTTAATATTTA-TATTA
*
30440485 ATTTAATACTTATATTA
1 ATTTAATATTTATATTA
30440502 A--TAATATTT-TATTA
1 ATTTAATATTTATATTA
*
30440516 ATTTAATATTAAAGTGATTA
1 ATTTAATATT-TA-T-ATTA
* *
30440536 TTTTAATA-TTAAATTTA
1 ATTTAATATTTATA-TTA
*
30440553 ATTTCATATTTAT
1 ATTTAATATTTAT
30440566 CTTGTAGATA
Statistics
Matches: 63, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
14 6 0.10
15 7 0.11
16 9 0.14
17 24 0.38
18 4 0.06
19 2 0.03
20 11 0.17
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTAATATTTATATTA
Found at i:30440602 original size:61 final size:58
Alignment explanation
Indices: 30440537--30440653 Score: 171
Period size: 61 Copynumber: 2.0 Consensus size: 58
30440527 AAGTGATTAT
* * *
30440537 TTTAATATTAAATTTAATTTCATATTTATCTTGTAGATAAATATTCTATTAATTTAATAAA
1 TTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAA
*
30440598 TTTAATATTAAATTTAATCTAATATTTATCTTGATAACTATTATATTAATTTAATA
1 TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
30440654 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 22 0.42
59 1 0.02
60 1 0.02
61 28 0.54
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (58 bp):
TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAA
Found at i:30443364 original size:12 final size:12
Alignment explanation
Indices: 30443347--30443385 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
30443337 ATGAGTTATT
30443347 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
30443359 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
30443371 TAAGTGAGAAAG
1 TAAGTAAGCAAG
30443383 TAA
1 TAA
30443386 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.54, C:0.05, G:0.23, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:30443508 original size:9 final size:9
Alignment explanation
Indices: 30443486--30443520 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
30443476 AAGCTTTATG
*
30443486 CTTACTTTC
1 CTTATTTTC
*
30443495 TTTATTTTC
1 CTTATTTTC
30443504 CTTATTTTC
1 CTTATTTTC
30443513 CTTATTTT
1 CTTATTTT
30443521 TATAGTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.69
Consensus pattern (9 bp):
CTTATTTTC
Found at i:30450217 original size:28 final size:28
Alignment explanation
Indices: 30450186--30450290 Score: 102
Period size: 28 Copynumber: 3.7 Consensus size: 28
30450176 TGGTGATACA
*
30450186 TATATTATATATATGCATGACTTTATCT
1 TATATAATATATATGCATGACTTTATCT
* *
30450214 TATATAATATATATGCATGGCTTTATTT
1 TATATAATATATATGCATGACTTTATCT
* * ** * * *
30450242 TACATAGTATATATTAATGGATTTTGGTAT
1 TATATAATATATATGCAT-GACTTT-ATCT
30450272 TATATAATATATATGCATG
1 TATATAATATATATGCATG
30450291 GTTGAGTATA
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 39 0.65
29 5 0.08
30 16 0.27
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (28 bp):
TATATAATATATATGCATGACTTTATCT
Found at i:30451429 original size:68 final size:68
Alignment explanation
Indices: 30451344--30451471 Score: 238
Period size: 68 Copynumber: 1.9 Consensus size: 68
30451334 GAATTATTAT
*
30451344 ATTGTATGAACTGTTATTTCATATGAACAGATATTTTATTCAATTGATAATTTATGTGATCTGGC
1 ATTGTATGAACTGTTATTTCATATGAACAGATATTTTATTCAATTGATAATTTATATGATCTGGC
30451409 TAA
66 TAA
*
30451412 ATTGTATGAATTGTTATTTCATATGAACAGATATTTTATTCAATTGATAATTTATATGAT
1 ATTGTATGAACTGTTATTTCATATGAACAGATATTTTATTCAATTGATAATTTATATGAT
30451472 ATGCTAATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (68 bp):
ATTGTATGAACTGTTATTTCATATGAACAGATATTTTATTCAATTGATAATTTATATGATCTGGC
TAA
Found at i:30453095 original size:19 final size:20
Alignment explanation
Indices: 30453048--30453097 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
30453038 TTTGTTAAAT
*
30453048 AATAATTTAATATTTTACTTA
1 AATAATATAATATTTTAC-TA
30453069 AAT-A-ATAATATTTTA-TA
1 AATAATATAATATTTTACTA
30453086 AATAATATAATA
1 AATAATATAATA
30453098 ATATATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 16 0.62
20 1 0.04
21 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAATATAATATTTTACTA
Found at i:30463693 original size:20 final size:20
Alignment explanation
Indices: 30463668--30463707 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
30463658 CGTAAAATAA
*
30463668 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
30463688 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
30463708 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:30463697 original size:34 final size:35
Alignment explanation
Indices: 30463653--30463719 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
30463643 CAGTAAAATG
*
30463653 TTTTCCGTAAAATAATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACTGGAAAATATTTTAC
* *
30463687 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTGGAAAATATTTT
30463720 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTGGAAAATATTTTAC
Found at i:30463784 original size:32 final size:32
Alignment explanation
Indices: 30463700--30463788 Score: 97
Period size: 33 Copynumber: 2.7 Consensus size: 32
30463690 TCTGTAAAAT
* **
30463700 GATTTACTGGAAAATATTTTCTGGTGTTTGATT
1 GATTTTCT-GAAAATATTTTCTGGTGTTTGACA
* * * *
30463733 GAATCTGTGTAAAATATTTTCTGTTGTTTGACA
1 GATTTTCTG-AAAATATTTTCTGGTGTTTGACA
30463766 GATTTTCTGAAAATATTTTCTGG
1 GATTTTCTGAAAATATTTTCTGG
30463789 AAAAGTTGTT
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (32 bp):
GATTTTCTGAAAATATTTTCTGGTGTTTGACA
Found at i:30464078 original size:26 final size:26
Alignment explanation
Indices: 30464045--30464102 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
30464035 ATATCAAAAT
30464045 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
30464071 TTATAGAGACCAATTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
30464097 TTATAG
1 TTATAG
30464103 TTTGAGGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:30466211 original size:27 final size:27
Alignment explanation
Indices: 30466173--30466271 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
30466163 AAATCTTTCT
30466173 AACTATGGACAAGAAACCGATTCACAA
1 AACTATGGACAAGAAACCGATTCACAA
* * *
30466200 AACTATGGACAAGAAACCAATAACATAAA
1 AACTATGGACAAGAAACCGAT-TCA-CAA
*
30466229 GGAACTA---ACCCAGAAACCGATTCACAA
1 --AACTATGGA-CAAGAAACCGATTCACAA
30466256 AACTATGGACAAGAAA
1 AACTATGGACAAGAAA
30466272 ATATACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 5 0.09
27 28 0.50
28 6 0.11
29 12 0.21
31 5 0.09
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (27 bp):
AACTATGGACAAGAAACCGATTCACAA
Found at i:30466704 original size:14 final size:14
Alignment explanation
Indices: 30466682--30466712 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
30466672 CACTGGAAAA
*
30466682 TCCGTAAAATATTT
1 TCCGGAAAATATTT
30466696 TCCGGAAAATATTT
1 TCCGGAAAATATTT
30466710 TCC
1 TCC
30466713 ACCAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (14 bp):
TCCGGAAAATATTT
Found at i:30472413 original size:12 final size:12
Alignment explanation
Indices: 30472383--30472414 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
30472373 TAAATTTAAT
*
30472383 TTAATACTTATC
1 TTAATAGTTATC
30472395 TTAATAGTTATC
1 TTAATAGTTATC
30472407 TTAATAGT
1 TTAATAGT
30472415 ATTATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.50
Consensus pattern (12 bp):
TTAATAGTTATC
Found at i:30472443 original size:25 final size:26
Alignment explanation
Indices: 30472390--30472455 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
30472380 AATTTAATAC
* *
30472390 TTATCTTAATAGTT-ATCTTAATAGTA
1 TTATATTAATA-TTAATATTAATAGTA
30472416 TTATATTAAT-TTAATATTAA-AGTGA
1 TTATATTAATATTAATATTAATAGT-A
*
30472441 TTATCTTAATATTAA
1 TTATATTAATATTAA
30472456 ATTTACTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.15
25 16 0.47
26 13 0.38
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (26 bp):
TTATATTAATATTAATATTAATAGTA
Found at i:30472521 original size:11 final size:11
Alignment explanation
Indices: 30472491--30472525 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
30472481 ATAAATATTC
30472491 TATTAATTTAA
1 TATTAATTTAA
*
30472502 TA-AAATTTAA
1 TATTAATTTAA
30472512 TATTAATTTAA
1 TATTAATTTAA
30472523 TAT
1 TAT
30472526 AATACTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:30472528 original size:10 final size:10
Alignment explanation
Indices: 30472494--30472528 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
30472484 AATATTCTAT
30472494 TAATTTAATA
1 TAATTTAATA
*
30472504 AAATTTAATA
1 TAATTTAATA
30472514 TTAATTTAATA
1 -TAATTTAATA
30472525 TAAT
1 TAAT
30472529 ACTTATCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TAATTTAATA
Found at i:30474056 original size:17 final size:17
Alignment explanation
Indices: 30474026--30474060 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
30474016 AATATGGAAA
*
30474026 GTAATCTTAAAAGATTT
1 GTAATATTAAAAGATTT
*
30474043 GTAATATTATAAGATTT
1 GTAATATTAAAAGATTT
30474060 G
1 G
30474061 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (17 bp):
GTAATATTAAAAGATTT
Found at i:30475400 original size:25 final size:26
Alignment explanation
Indices: 30475364--30475412 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
30475354 CGCTCAATTT
30475364 ATTTCTAGTATTTATTTT-TATTTGA
1 ATTTCTAGTATTTATTTTATATTTGA
30475389 ATTT-TAGTTATTTATTTTATATTT
1 ATTTCTAG-TATTTATTTTATATTT
30475413 AGATTTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.64
26 5 0.23
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.67
Consensus pattern (26 bp):
ATTTCTAGTATTTATTTTATATTTGA
Found at i:30475413 original size:19 final size:19
Alignment explanation
Indices: 30475360--30475414 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
30475350 ATTGCGCTCA
30475360 ATTTATTTCTAGTATTTA-TT
1 ATTTATTT-TA-TATTTAGTT
*
30475380 -TTTATTTGA-ATTTTAGTT
1 ATTTATTTTATA-TTTAGTT
30475398 ATTTATTTTATATTTAG
1 ATTTATTTTATATTTAG
30475415 ATTTAATCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 1 0.03
17 4 0.14
18 3 0.10
19 20 0.69
20 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTATTTTATATTTAGTT
Found at i:30477046 original size:13 final size:13
Alignment explanation
Indices: 30477007--30477047 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
30476997 TTGCCTATTC
30477007 TTTATTTTTATT-T
1 TTTA-TTTTATTAT
*
30477020 GTTATTTTATTAT
1 TTTATTTTATTAT
30477033 TTTATTTTATTAT
1 TTTATTTTATTAT
30477046 TT
1 TT
30477048 CCAGCACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 7 0.28
13 18 0.72
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:30478831 original size:24 final size:24
Alignment explanation
Indices: 30478800--30478848 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
30478790 AAATAGTTCA
*
30478800 AAAAAGATATTTTTTGTTTACTAG
1 AAAAAGATAGTTTTTGTTTACTAG
30478824 AAAAAGATAGTTTTTGTTTACTAG
1 AAAAAGATAGTTTTTGTTTACTAG
30478848 A
1 A
30478849 TTTTTCTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (24 bp):
AAAAAGATAGTTTTTGTTTACTAG
Found at i:30487043 original size:13 final size:13
Alignment explanation
Indices: 30487025--30487054 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
30487015 TCTTAATCAA
*
30487025 TATTATATGATAT
1 TATTATAGGATAT
30487038 TATTATAGGATAT
1 TATTATAGGATAT
30487051 TATT
1 TATT
30487055 TTTTAGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATTATAGGATAT
Found at i:30487204 original size:39 final size:39
Alignment explanation
Indices: 30487160--30487238 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
30487150 TTATGGCATA
*
30487160 TGAGTAAGGTTTTTTACACAATTTTTTCTTTCATTATTC
1 TGAGTAAAGTTTTTTACACAATTTTTTCTTTCATTATTC
30487199 TGAGTAAAGTTTTTTACACAATTTTTTCTTTCATTATTC
1 TGAGTAAAGTTTTTTACACAATTTTTTCTTTCATTATTC
30487238 T
1 T
30487239 AAATGGCTAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.09, T:0.54
Consensus pattern (39 bp):
TGAGTAAAGTTTTTTACACAATTTTTTCTTTCATTATTC
Found at i:30489739 original size:45 final size:45
Alignment explanation
Indices: 30489577--30489741 Score: 174
Period size: 45 Copynumber: 3.7 Consensus size: 45
30489567 AGAAACGAGA
* * * ** *
30489577 AAGACCATAATTGAAAGGTATCATGATATTTAAACC-GAAAT-AAT
1 AAGACCATAGTTGAAAGATATTATGGCA-TTAAACCAAAAATGAAT
* **
30489621 AAGACCATAGTTGAAAGATATTATGGCACTAAACCAAAAATGTGT
1 AAGACCATAGTTGAAAGATATTATGGCATTAAACCAAAAATGAAT
* * *
30489666 AAGACCATAGTTGAAAGATACTATGGCATTAAAGTC-AATATGAAT
1 AAGACCATAGTTGAAAGATATTATGGCATTAAA-CCAAAAATGAAT
*
30489711 AAGACCATAGTTGAAAGATATTAGGGCATTA
1 AAGACCATAGTTGAAAGATATTATGGCATTA
30489742 CATCGGTAAC
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
43 6 0.06
44 27 0.27
45 67 0.66
46 1 0.01
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.26
Consensus pattern (45 bp):
AAGACCATAGTTGAAAGATATTATGGCATTAAACCAAAAATGAAT
Found at i:30489808 original size:45 final size:45
Alignment explanation
Indices: 30489619--30489828 Score: 178
Period size: 45 Copynumber: 4.7 Consensus size: 45
30489609 AACCGAAATA
* * ** *
30489619 ATAAGACCATAGTTGAAAGATATTATGGCACTAAACCAAAAATGT
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
* * *
30489664 GTAAGACCATAGTTGAAAGATACTATGGCATTAAAGTC--AATATGA
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAA-TCGGAA-ATGC
* * * *
30489709 ATAAGACCATAGTTGAAAGATATTAGGGCATTACATCGGTAACAAT-C
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGG--A-AATGC
** *
30489756 A-AA-ACCATAGTTGAAAGATACTATGGCACTATTTCGGGAATGC
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
* * *
30489799 ATAAGACCATGGTTGGAAGATACCATGGCA
1 ATAAGACCATAGTTGAAAGATACTATGGCA
30489829 TCCTTTGGAA
Statistics
Matches: 136, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
42 3 0.02
43 2 0.01
44 6 0.04
45 117 0.86
46 3 0.02
47 1 0.01
48 3 0.02
49 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (45 bp):
ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
Found at i:30490941 original size:19 final size:20
Alignment explanation
Indices: 30490902--30490939 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
30490892 TGTGACCCTG
30490902 TTTCTAATTTTTTTCAAAAT
1 TTTCTAATTTTTTTCAAAAT
30490922 TTTCT-ATTTTATTTCAAA
1 TTTCTAATTTT-TTTCAAA
30490940 TTAGTCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTCTAATTTTTTTCAAAAT
Found at i:30491266 original size:56 final size:56
Alignment explanation
Indices: 30491202--30491321 Score: 161
Period size: 56 Copynumber: 2.2 Consensus size: 56
30491192 GGTGTTAGGG
* *
30491202 TATTATTATGGGATACTATCTTTTAACAATTTGATTCCTAATAAGATGTTATATAA
1 TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGATATTATATAA
* * * ** *
30491258 TATTATTATGTGATATTATCTCTTAGCAATTTGATTCCTAATGGGATATTATATGA
1 TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGATATTATATAA
30491314 TA-TATTAT
1 TATTATTAT
30491322 CTTTTAGCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 6 0.11
56 50 0.89
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (56 bp):
TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGATATTATATAA
Found at i:30492842 original size:9 final size:9
Alignment explanation
Indices: 30492825--30492861 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
30492815 TGAGTTTTCG
30492825 AATTCGAAT
1 AATTCGAAT
*
30492834 AACTCGAAT
1 AATTCGAAT
30492843 AATTCGAAT
1 AATTCGAAT
30492852 AATTCGAAT
1 AATTCGAAT
30492861 A
1 A
30492862 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:30492938 original size:21 final size:21
Alignment explanation
Indices: 30492899--30492939 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
30492889 CCCAAACTCC
*
30492899 CAAAACTTTTTACTTTTCCCT
1 CAAAACTTTTTACTCTTCCCT
30492920 CAAAAC-TTTTACTCCTTCCC
1 CAAAACTTTTTACT-CTTCCC
30492940 ATTTTCCCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.24, C:0.34, G:0.00, T:0.41
Consensus pattern (21 bp):
CAAAACTTTTTACTCTTCCCT
Found at i:30500666 original size:30 final size:30
Alignment explanation
Indices: 30500630--30500714 Score: 161
Period size: 30 Copynumber: 2.8 Consensus size: 30
30500620 ACAATATAAT
30500630 ATTAAAGACTATACTTAATTTTTAATTTAG
1 ATTAAAGACTATACTTAATTTTTAATTTAG
*
30500660 ATTAAAGGCTATACTTAATTTTTAATTTAG
1 ATTAAAGACTATACTTAATTTTTAATTTAG
30500690 ATTAAAGACTATACTTAATTTTTAA
1 ATTAAAGACTATACTTAATTTTTAA
30500715 AAATTAAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (30 bp):
ATTAAAGACTATACTTAATTTTTAATTTAG
Found at i:30501484 original size:55 final size:55
Alignment explanation
Indices: 30501413--30501530 Score: 227
Period size: 55 Copynumber: 2.1 Consensus size: 55
30501403 AAATCTAATG
30501413 AAGGAAAAAGAGTACACAATCTCCTGTTACAAGTTGCCTTGTTAAAAACCTTTAC
1 AAGGAAAAAGAGTACACAATCTCCTGTTACAAGTTGCCTTGTTAAAAACCTTTAC
30501468 AAGGAAAAAGAGTACACAATCTCCTGTTACAAGTTGCCTTGTTAAAAACCTTTAC
1 AAGGAAAAAGAGTACACAATCTCCTGTTACAAGTTGCCTTGTTAAAAACCTTTAC
*
30501523 CAGGAAAA
1 AAGGAAAA
30501531 CCCAATAGGA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (55 bp):
AAGGAAAAAGAGTACACAATCTCCTGTTACAAGTTGCCTTGTTAAAAACCTTTAC
Found at i:30516041 original size:51 final size:50
Alignment explanation
Indices: 30515986--30516160 Score: 163
Period size: 50 Copynumber: 3.5 Consensus size: 50
30515976 TCGGGGAAAC
* *
30515986 AAGATTTGCCGTTGTAGCTTTTAATCTGTTTCATTGCACTGCAAGGGAAGT
1 AAGATTCGCCGTTGTAGC-TTTAATCTGTTTCACTGCACTGCAAGGGAAGT
* * * * * * ** *
30516037 AAGATTTGCTGTTGTAGCTTTAGTCTTTTTAACTGCAATGCCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
* * * * * *
30516087 AAGATTCACCGTTGTGGCTTTAATTTGTTCCACTGCACTGCCAA-AGAAAT
1 AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTG-CAAGGGAAGT
*
30516137 AAGATTCGCTGTTGTAGCTTTAAT
1 AAGATTCGCCGTTGTAGCTTTAAT
30516161 GTTGGGGAAG
Statistics
Matches: 96, Mismatches: 27, Indels: 3
0.76 0.21 0.02
Matches are distributed among these distances:
50 78 0.81
51 18 0.19
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTGTTTCACTGCACTGCAAGGGAAGT
Found at i:30516151 original size:100 final size:101
Alignment explanation
Indices: 30515977--30516158 Score: 251
Period size: 100 Copynumber: 1.8 Consensus size: 101
30515967 GTTGCAGTGT
** * * * *
30515977 CGGGGAAACAAGATTTGCCGTTGTAGCTTTTAATCTGTTTCATTGCACTGCAAGGGAAGTAAGAT
1 CGGGGAAACAAGATTCACCGTTGTAGCTTTTAATCTGTTCCACTGCACTGCAAGAGAAATAAGAT
*
30516042 TTGCTGTTGTAGCTTTAGTCTTTTTAACTGCAATGC
66 TCGCTGTTGTAGCTTTAGTCTTTTTAACTGCAATGC
* * *
30516078 CGGGGAAGCAAGATTCACCGTTGTGGC-TTTAATTTGTTCCACTGCACTGCCAA-AGAAATAAGA
1 CGGGGAAACAAGATTCACCGTTGTAGCTTTTAATCTGTTCCACTGCACTG-CAAGAGAAATAAGA
30516141 TTCGCTGTTGTAGCTTTA
65 TTCGCTGTTGTAGCTTTA
30516159 ATGTTGGGGA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
100 44 0.63
101 26 0.37
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (101 bp):
CGGGGAAACAAGATTCACCGTTGTAGCTTTTAATCTGTTCCACTGCACTGCAAGAGAAATAAGAT
TCGCTGTTGTAGCTTTAGTCTTTTTAACTGCAATGC
Found at i:30517104 original size:44 final size:44
Alignment explanation
Indices: 30517041--30517501 Score: 548
Period size: 44 Copynumber: 10.5 Consensus size: 44
30517031 ACCTGCTTCG
* ** *
30517041 CTGCTGTTCAGGGAGCTAGGACTTACAGCCTTCCACATATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* * **
30517085 CTGCTGGTCAGGGAGCTAGGATTTATAATCTTCCGTCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* * * *
30517129 CTACTGTTCAGGGAGCTGGGACTTACAGTCTTCCACCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* * * *
30517173 TTGCTGGTCAGGGAACTAGGATTTACAATCTTCCGCCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
**
30517217 CTGCTGTTCAGGGAGCTAGGACTTT-CCGTCTTCCACCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGA-TTTACAATCTTCCACCTATTCCA
* * * * *
30517261 CTACTGGTCAGGGAGCTAGGATTTATAATCTTCCGCCTATTCAA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* *
30517305 CTGCTGTTCAGGGAGTTAGGACTTT-CAGTCTTCCACCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGA-TTTACAATCTTCCACCTATTCCA
* ** * *
30517349 CTGCTGGTCAGGGAGCTAGGATTTTTAATCTTTCGCCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* *
30517393 CTGCTGTTCAGGGAGCTAGGATTTTCAGTCTTCCACCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
* * ** *
30517437 CTGCTGGTCAAGGAGCTAGGATTTTTAATCTTCCGCCTATTCCA
1 CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
*
30517481 CTGCTATTCAGGGAGCTAGGA
1 CTGCTGTTCAGGGAGCTAGGA
30517502 CTTATAGTTT
Statistics
Matches: 350, Mismatches: 63, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
43 6 0.02
44 338 0.97
45 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.32
Consensus pattern (44 bp):
CTGCTGTTCAGGGAGCTAGGATTTACAATCTTCCACCTATTCCA
Found at i:30517178 original size:88 final size:88
Alignment explanation
Indices: 30517041--30517505 Score: 741
Period size: 88 Copynumber: 5.3 Consensus size: 88
30517031 ACCTGCTTCG
* *
30517041 CTGCTGTTCAGGGAGCTAGGACTTACAGCCTTCCACATATTCCACTGCTGGTCAGGGAGCTAGGA
1 CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
*
30517106 TTTATAATCTTCCGTCTATTCCA
66 TTTATAATCTTCCGCCTATTCCA
* * * *
30517129 CTACTGTTCAGGGAGCTGGGACTTACAGTCTTCCACCTATTCCATTGCTGGTCAGGGAACTAGGA
1 CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
*
30517194 TTTACAATCTTCCGCCTATTCCA
66 TTTATAATCTTCCGCCTATTCCA
* * *
30517217 CTGCTGTTCAGGGAGCTAGGACTTTCCGTCTTCCACCTATTCCACTACTGGTCAGGGAGCTAGGA
1 CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
*
30517282 TTTATAATCTTCCGCCTATTCAA
66 TTTATAATCTTCCGCCTATTCCA
* *
30517305 CTGCTGTTCAGGGAGTTAGGACTTTCAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
1 CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
* *
30517370 TTTTTAATCTTTCGCCTATTCCA
66 TTTATAATCTTCCGCCTATTCCA
* * *
30517393 CTGCTGTTCAGGGAGCTAGGATTTTCAGTCTTCCACCTATTCCACTGCTGGTCAAGGAGCTAGGA
1 CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
*
30517458 TTTTTAATCTTCCGCCTATTCCA
66 TTTATAATCTTCCGCCTATTCCA
*
30517481 CTGCTATTCAGGGAGCTAGGACTTA
1 CTGCTGTTCAGGGAGCTAGGACTTA
30517506 TAGTTTCACT
Statistics
Matches: 347, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 347 1.00
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.32
Consensus pattern (88 bp):
CTGCTGTTCAGGGAGCTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAGCTAGGA
TTTATAATCTTCCGCCTATTCCA
Found at i:30518758 original size:8 final size:7
Alignment explanation
Indices: 30518724--30518767 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
30518714 TTGGCCTCTC
30518724 CATTTTT
1 CATTTTT
*
30518731 TACTTTTT
1 CA-TTTTT
30518739 CATTTTT
1 CATTTTT
30518746 CATTTTT
1 CATTTTT
*
30518753 CAATTTT
1 CATTTTT
30518760 CATATTTT
1 CAT-TTTT
30518768 TTTCGACTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
7 21 0.68
8 10 0.32
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:30537085 original size:15 final size:14
Alignment explanation
Indices: 30537036--30537086 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
30537026 AAAAAATTCA
*
30537036 ATAAATAAAAATAT
1 ATAAATTAAAATAT
30537050 ATAAAATTATTAAATAT
1 AT-AAATTA--AAATAT
30537067 -TAAATTAAAATATT
1 ATAAATTAAAATA-T
30537081 ATAAAT
1 ATAAAT
30537087 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 5 0.16
14 3 0.10
15 16 0.52
16 1 0.03
17 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:30538288 original size:31 final size:31
Alignment explanation
Indices: 30538248--30538308 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
30538238 TTATCCAAAA
30538248 GTATATGTATGCTTAGGTAGAGACCGAAAGG
1 GTATATGTATGCTTAGGTAGAGACCGAAAGG
*
30538279 GTATCTGTATGCTTAGGTAGAGACCGAAAG
1 GTATATGTATGCTTAGGTAGAGACCGAAAG
30538309 AGTGACTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.26
Consensus pattern (31 bp):
GTATATGTATGCTTAGGTAGAGACCGAAAGG
Found at i:30540290 original size:12 final size:11
Alignment explanation
Indices: 30540258--30540293 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
30540248 TGACTTCTTG
*
30540258 TTTAAATTTAT
1 TTTAAATTTAA
30540269 TTTAAATTTAA
1 TTTAAATTTAA
30540280 TTTAAATTTTAA
1 TTTAAA-TTTAA
30540292 TT
1 TT
30540294 GTAGTTGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.70
12 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:30545105 original size:86 final size:84
Alignment explanation
Indices: 30544968--30545161 Score: 250
Period size: 86 Copynumber: 2.3 Consensus size: 84
30544958 GTGTAAAAAG
* * *
30544968 CCCTCAAAT-TTTTCAAAAAAGCAATTAAGCTCCTGTTTTTTTTCACTCAATTGGGTACTTGAAC
1 CCCTCAAATCTTTTTAAAAAA--AATTAAGCCCCTCTTTTTTTTCACTCAATTGGGTACTTGAAC
*
30545032 TTTCAAAATGCATCAAAAAT-A
64 TTTCAAAATACA-CAAAAATGA
*
30545053 CCCTCAAATCTTTTTTAAAAAAATTAAGCCCCTACTTTTTTTTCCACTCAATTGGGTACTTGAAC
1 CCCTCAAATCTTTTTAAAAAAAATTAAGCCCCT-CTTTTTTTT-CACTCAATTGGGTACTTGAAC
*
30545118 TTTCAAAATACACCAAAATGA
64 TTTCAAAATACACAAAAATGA
*
30545139 CTCTCAAA-CTTTTTCAAAAAAAA
1 CCCTCAAATCTTTTT-AAAAAAAA
30545162 AGCTATTAAG
Statistics
Matches: 96, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
84 11 0.11
85 29 0.30
86 56 0.58
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.35
Consensus pattern (84 bp):
CCCTCAAATCTTTTTAAAAAAAATTAAGCCCCTCTTTTTTTTCACTCAATTGGGTACTTGAACTT
TCAAAATACACAAAAATGA
Found at i:30545317 original size:10 final size:10
Alignment explanation
Indices: 30545259--30545407 Score: 57
Period size: 11 Copynumber: 15.4 Consensus size: 10
30545249 AATAAAAAAT
*
30545259 AAATTATTAA
1 AAATTATAAA
*
30545269 AAA-T-TAGA
1 AAATTATAAA
30545277 AAA-TAT-AA
1 AAATTATAAA
*
30545285 AAATTGTAAAA
1 AAATTAT-AAA
*
30545296 AAATATAAAAA
1 AAAT-TATAAA
*
30545307 AAATTGTAAA
1 AAATTATAAA
**
30545317 ATTTTAT-AA
1 AAATTATAAA
30545326 AAATTATAAAA
1 AAATTAT-AAA
30545337 AAATTATAAA
1 AAATTATAAA
* **
30545347 ATATT-T-TG
1 AAATTATAAA
30545355 AAA-TATAAA
1 AAATTATAAA
30545364 AAAGTTAT--A
1 AAA-TTATAAA
* *
30545373 AAATTTTATA
1 AAATTATAAA
*
30545383 AAATCATAAGA
1 AAATTATAA-A
*
30545394 AAATTATACA
1 AAATTATAAA
30545404 AAAT
1 AAAT
30545408 GTAAAGAAAT
Statistics
Matches: 100, Mismatches: 25, Indels: 28
0.65 0.16 0.18
Matches are distributed among these distances:
7 1 0.01
8 16 0.16
9 19 0.19
10 30 0.30
11 33 0.33
12 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (10 bp):
AAATTATAAA
Found at i:30545339 original size:22 final size:22
Alignment explanation
Indices: 30545280--30545341 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
30545270 AATTAGAAAA
*
30545280 TATAAAAATTGTAAAAAAATAT
1 TATAAAAATTGTAAAAAAATTT
* *
30545302 AAAAAAAATTGT---AAAATTT
1 TATAAAAATTGTAAAAAAATTT
*
30545321 TATAAAAATTATAAAAAAATT
1 TATAAAAATTGTAAAAAAATT
30545342 ATAAAATATT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
19 15 0.48
22 16 0.52
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (22 bp):
TATAAAAATTGTAAAAAAATTT
Found at i:30545371 original size:28 final size:27
Alignment explanation
Indices: 30545295--30545401 Score: 108
Period size: 30 Copynumber: 3.7 Consensus size: 27
30545285 AAATTGTAAA
*
30545295 AAAATATAAAAAAAATTGTAAAATTTTAT
1 AAAATAT--AAAAAATTATAAAATTTTAT
30545324 AAAAATTATAAAAAAATTATAAAATATTT-T
1 -AAAA-TAT-AAAAAATTATAAAAT-TTTAT
*
30545354 GAAATATAAAAAAGTTATAAAATTTTAT
1 AAAATATAAAAAA-TTATAAAATTTTAT
30545382 AAAATCATAAGAAAATTATA
1 AAAAT-ATAA-AAAATTATA
30545402 CAAAATGTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 13
0.81 0.04 0.15
Matches are distributed among these distances:
27 9 0.13
28 17 0.25
29 12 0.18
30 24 0.35
31 6 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAATATAAAAAATTATAAAATTTTAT
Found at i:30545417 original size:59 final size:59
Alignment explanation
Indices: 30545274--30545422 Score: 171
Period size: 58 Copynumber: 2.5 Consensus size: 59
30545264 ATTAAAAATT
* * *
30545274 AGAAAA-TATAAAAATTGTAAAAAAATATAAAAAAAATTGTAAAATTTTATAAAAATTATA
1 AGAAAATTATAAAAA-TGTAAAGAAATAT-AAAAAAATTATAAAATTTTATAAAAATCATA
* ** *
30545334 AAAAAATTATAAAATAT-T-TTGAAATATAAAAAAGTTATAAAATTTTAT-AAAATCATA
1 AGAAAATTATAAAA-ATGTAAAGAAATATAAAAAAATTATAAAATTTTATAAAAATCATA
30545391 AGAAAATTATACAAAATGTAAAGAAATATAAA
1 AGAAAATTATA-AAAATGTAAAGAAATATAAA
30545423 TTTCGTAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
57 20 0.27
58 23 0.31
59 16 0.22
60 6 0.08
61 8 0.11
62 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.30
Consensus pattern (59 bp):
AGAAAATTATAAAAATGTAAAGAAATATAAAAAAATTATAAAATTTTATAAAAATCATA
Found at i:30545620 original size:28 final size:29
Alignment explanation
Indices: 30545580--30545640 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
30545570 GGTCTTTATT
30545580 TTTTTATGATTTTTAAT-AAATTTTAAAA
1 TTTTTATGATTTTTAATAAAATTTTAAAA
* *
30545608 TTTTTAT-ATTTTTATTAAAATTTTATAA
1 TTTTTATGATTTTTAATAAAATTTTAAAA
30545636 TTTTT
1 TTTTT
30545641 CTAAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTTATGATTTTTAATAAAATTTTAAAA
Found at i:30545625 original size:20 final size:20
Alignment explanation
Indices: 30545602--30545662 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
30545592 TTAATAAATT
30545602 TTAAAATTTT-TATATTTTTA
1 TTAAAATTTTATA-ATTTTTA
30545622 TTAAAATTTTATAATTTTT-
1 TTAAAATTTTATAATTTTTA
*
30545641 CT-AAATTTTATAATTTATTA
1 TTAAAATTTTATAATTT-TTA
30545661 TT
1 TT
30545663 TATATATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 14 0.39
19 3 0.08
20 17 0.47
21 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTAAAATTTTATAATTTTTA
Found at i:30545661 original size:10 final size:9
Alignment explanation
Indices: 30545580--30545661 Score: 67
Period size: 9 Copynumber: 8.8 Consensus size: 9
30545570 GGTCTTTATT
*
30545580 TTTTTATGA
1 TTTTTATAA
30545589 TTTTTAATAA
1 TTTTT-ATAA
* *
30545599 ATTTTAAAA
1 TTTTTATAA
30545608 TTTTTAT-A
1 TTTTTATAA
30545616 TTTTTATTAAA
1 TTTTTA-T-AA
*
30545627 ATTTTATAA
1 TTTTTATAA
*
30545636 TTTTTCTAA
1 TTTTTATAA
*
30545645 ATTTTATAA
1 TTTTTATAA
30545654 TTTATTAT
1 TTT-TTAT
30545662 TTATATATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
8 7 0.12
9 32 0.56
10 12 0.21
11 6 0.11
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:30545850 original size:86 final size:85
Alignment explanation
Indices: 30545698--30545861 Score: 188
Period size: 86 Copynumber: 1.9 Consensus size: 85
30545688 AGAGCAGGGG
* * **
30545698 CTTAATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGTATTTGGAAAGTTCAAATATCCAA
1 CTTAATTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATACATTTGGAAAGTTCAAATATCCAA
* *
30545763 TTGATTGAAAAAAGTAAGGA
66 TTGAGTAAAAAAAGTAAGGA
* * * * *
30545783 CTTAATTGCTTTTTTTGAAGAAGTTTAAGGGT-TGTTTTGATACATTTTGAAAGTTTAAGT-GCT
1 CTTAATTGC-TTTTTTGAAAAAGTTTAAGGGTCT-TTTTGATACATTTGGAAAGTTCAAATATC-
30545846 CAATTGAGTAAAAAAA
63 CAATTGAGTAAAAAAA
30545862 ATGGAGGAAC
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 11 0.17
86 54 0.83
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.41
Consensus pattern (85 bp):
CTTAATTGCTTTTTTGAAAAAGTTTAAGGGTCTTTTTGATACATTTGGAAAGTTCAAATATCCAA
TTGAGTAAAAAAAGTAAGGA
Found at i:30546501 original size:17 final size:17
Alignment explanation
Indices: 30546469--30546518 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
30546459 TTTTGAAAAA
30546469 AAAATTAAATATATATTTT
1 AAAATT-AA-ATATATTTT
30546488 AAAATTAAATATATTTT
1 AAAATTAAATATATTTT
*
30546505 -AATTTAAA-ATATTT
1 AAAATTAAATATATTT
30546519 AATTTTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 6 0.20
16 7 0.23
17 9 0.30
18 2 0.07
19 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AAAATTAAATATATTTT
Found at i:30546521 original size:14 final size:16
Alignment explanation
Indices: 30546479--30546523 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
30546469 AAAATTAAAT
*
30546479 ATATATTTTAAAATTAA
1 ATATATTTT-AATTTAA
30546496 ATATATTTTAATTTAA
1 ATATATTTTAATTTAA
30546512 A-ATA-TTTAATTT
1 ATATATTTTAATTT
30546524 TTTAATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.30
15 3 0.11
16 7 0.26
17 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTTAA
Found at i:30554448 original size:15 final size:16
Alignment explanation
Indices: 30554421--30554450 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30554411 TTTAAAAAAA
30554421 ATAAAAATAGAAAATT
1 ATAAAAATAGAAAATT
30554437 ATAAAAAT-GAAAAT
1 ATAAAAATAGAAAAT
30554451 ATTAAGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (16 bp):
ATAAAAATAGAAAATT
Found at i:30557793 original size:51 final size:49
Alignment explanation
Indices: 30557663--30558006 Score: 286
Period size: 51 Copynumber: 6.8 Consensus size: 49
30557653 AGTTGCTAGG
*
30557663 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTTG-
1 TCAC-TGTGTAGTACTATGTGTAGGCTACTACGTGTACC-G---GATAGCTTGA
***
30557716 -CA-TGTGTAGTACTATGTGTAGGCTACTATACGTACCGGATAGCTTCGA
1 TCACTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGCTT-GA
* * *** *
30557764 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCAC-TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAT-AGCTTGA
* *
30557815 TCACTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTTG-
1 TCACTGTGTAGTACTATGTGTAGGCTACTACGTGTACCG----GATAGCTTGA
*
30557867 -CA-TGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGATAGCTTCGA
1 TCACTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGCTT-GA
* ** *** *
30557915 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATTGGATGAAAATGG
1 TCAC-TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAT-AGCTTGA
* * * *
30557966 TCACATGTGTAGTACTATGTGCAGTCTACTATGTGAACCGG
1 TCAC-TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGG
30558007 GTTTCATTTA
Statistics
Matches: 240, Mismatches: 35, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
46 13 0.05
47 2 0.01
49 5 0.02
50 98 0.41
51 111 0.46
52 6 0.03
53 3 0.01
54 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TCACTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGCTTGA
Found at i:30557852 original size:101 final size:99
Alignment explanation
Indices: 30557662--30558006 Score: 308
Period size: 101 Copynumber: 3.4 Consensus size: 99
30557652 AAGTTGCTAG
* *
30557662 GTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATG-ATA-GGTTGCA-TGTGTA
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGAAAATGG-T-CACTGTGTA
*** *
30557724 GTACTATGTGTAGGCTACTATACGTACCGGATAGCTT
63 GTACTATGTGTAGGCTACTACGTGTACCGGATAGATT
*
30557761 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTCACTGTGTAG
1 -G-TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAATGGTCACTGTGTAG
* *
30557826 TACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTT
64 TACTATGTGTAGGCTACTACGTGTACCG----GATAGATT
* * *** *
30557866 G-CA--TGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGAT-AGCTTCGATCACATGTGTAG
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT-GGTCAC-TGTGTAG
* ** * *
30557927 TACTATGTGCAGGCTACTACGTGTATTGGATGAAAATG
64 TACTATGTGTAGGCTACTACGTGTACCGGAT--AGATT
* * * *
30557965 GTCACATGTGTAGTACTATGTGCAGTCTACTATGTGAACCGG
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
30558007 GTTTCATTTA
Statistics
Matches: 205, Mismatches: 25, Indels: 28
0.79 0.10 0.11
Matches are distributed among these distances:
97 2 0.01
99 5 0.02
100 48 0.23
101 106 0.52
102 37 0.18
104 1 0.00
105 6 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (99 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAATGGTCACTGTGTAGTA
CTATGTGTAGGCTACTACGTGTACCGGATAGATT
Found at i:30557885 original size:12 final size:14
Alignment explanation
Indices: 30557868--30557900 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
30557858 GACAGGTTGC
30557868 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
30557880 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
30557894 ATGTGTA
1 ATGTGTA
30557901 CCGGATAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.39
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:30557942 original size:151 final size:152
Alignment explanation
Indices: 30557661--30558005 Score: 584
Period size: 151 Copynumber: 2.3 Consensus size: 152
30557651 GAAGTTGCTA
* * *
30557661 GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTTGCATGTGTAGT
1 GGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTTGCATGTGTAGT
*
30557726 ACTATGTGTAGGCTACTATACGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGTAGGCTACTATACGTACCGGATAGCTTCGATCACATGTGTAGTACTATGTGCAGGCT
30557791 ACTACGTGTATCGGATGAAAAT
131 ACTACGTGTATCGGATGAAAAT
30557813 GGTCAC-TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTTGCATGTGTAGT
1 GGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTTGCATGTGTAGT
**
30557877 ACTATGTGTAGGCTACTATGTGTACCGGATAGCTTCGATCACATGTGTAGTACTATGTGCAGGCT
66 ACTATGTGTAGGCTACTATACGTACCGGATAGCTTCGATCACATGTGTAGTACTATGTGCAGGCT
*
30557942 ACTACGTGTATTGGATGAAAAT
131 ACTACGTGTATCGGATGAAAAT
* * * *
30557964 GGTCACATGTGTAGTACTATGTGCAGTCTACTATGTGAACCG
1 GGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCG
30558006 GGTTTCATTT
Statistics
Matches: 182, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
151 145 0.80
152 37 0.20
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (152 bp):
GGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCGAAATGACAGGTTGCATGTGTAGT
ACTATGTGTAGGCTACTATACGTACCGGATAGCTTCGATCACATGTGTAGTACTATGTGCAGGCT
ACTACGTGTATCGGATGAAAAT
Done.