Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 113 of 199
Found at i:32112059 original size:173 final size:173
Alignment explanation
Indices: 32111768--32112086 Score: 451
Period size: 173 Copynumber: 1.8 Consensus size: 173
32111758 GCTGCTGAGG
** * * * * * *
32111768 CCACACGGCCAGTTACACGGGCGTGTTCCCAGGCCGTGTGGTTGGCCGTGTAACTTACTGTTTAT
1 CCACACGGCCAGGGACACGGGAGTGTGCCCAAGCCGTGTGGTTGGCCATGTAACTCACTGTTCAT
* * * * *
32111833 CAATTTGAGGCCACACGGGCAAGGTACACAGCAGTGTGTCTAGGCCTTGTGTGGCCATATTAGAG
66 CAATTTGAGGCCACACAGGCAAGGCACACAGCACTGTGTCTAAGCCATGTGTGGCCATATTAGAG
*
32111898 CAGAGTTGGCACGGGTGTGTAACTCACTGTTTATGGTACAAGA
131 CAGAGTTCGCACGGGTGTGTAACTCACTGTTTATGGTACAAGA
32111941 CCACACGGCCAGGGACACGGGAGTGTGCCCAAGCCGTGTGGTTGGCCATGTAACTCACTGTTCAT
1 CCACACGGCCAGGGACACGGGAGTGTGCCCAAGCCGTGTGGTTGGCCATGTAACTCACTGTTCAT
* * ** *
32112006 CGATTTGGGGCCACACAGGCAAGGCACATGGTC-CTGTGTCTAAGCCATGTGTGGCCATATTAGT
66 CAATTTGAGGCCACACAGGCAAGGCACACAG-CACTGTGTCTAAGCCATGTGTGGCCATATTAGA
32112070 GCAGAGTTCGCACGGGT
130 GCAGAGTTCGCACGGGT
32112087 AAGGGACACG
Statistics
Matches: 126, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
173 125 0.99
174 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (173 bp):
CCACACGGCCAGGGACACGGGAGTGTGCCCAAGCCGTGTGGTTGGCCATGTAACTCACTGTTCAT
CAATTTGAGGCCACACAGGCAAGGCACACAGCACTGTGTCTAAGCCATGTGTGGCCATATTAGAG
CAGAGTTCGCACGGGTGTGTAACTCACTGTTTATGGTACAAGA
Found at i:32112689 original size:62 final size:62
Alignment explanation
Indices: 32112564--32112690 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 62
32112554 CACACGGGTA
* * *
32112564 AGGGACATGGGCGTGTGCCTAGGCCGTGTAACTCACAGTTTGTGGTACAAGACGACACAGCC
1 AGGGACACGGGCGTGTGCCTAGGACGTGTAACTCACAGTTTGTGGTACAAGACCACACAGCC
* * * *
32112626 AGGGACACGGGCGTGTGCTTAGGATGTGTAACTCACTGTTTGTGGTACAA-AGCCACACGGCC
1 AGGGACACGGGCGTGTGCCTAGGACGTGTAACTCACAGTTTGTGGTACAAGA-CCACACAGCC
32112688 AGG
1 AGG
32112691 TATATAGGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 1 0.02
62 56 0.98
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (62 bp):
AGGGACACGGGCGTGTGCCTAGGACGTGTAACTCACAGTTTGTGGTACAAGACCACACAGCC
Found at i:32117883 original size:17 final size:18
Alignment explanation
Indices: 32117846--32117886 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32117836 CTATCGTGGC
*
32117846 TTAAAAAGCTATTCCCTT
1 TTAAAAAGCTATTACCTT
*
32117864 TTAAAAAGTTATTACC-T
1 TTAAAAAGCTATTACCTT
32117881 TTAAAA
1 TTAAAA
32117887 CCTTATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (18 bp):
TTAAAAAGCTATTACCTT
Found at i:32118600 original size:22 final size:22
Alignment explanation
Indices: 32118557--32118621 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
32118547 GGCTAGTAAC
* * *
32118557 CAGAATGGCTAAGAGCCGTAAA
1 CAGAATAGCTAAAAGCCATAAA
* * *
32118579 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTAAAAGCCATAAA
*
32118601 CAGAATGGCTAAAAGCCATAA
1 CAGAATAGCTAAAAGCCATAA
32118622 GTACAGTAAT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (22 bp):
CAGAATAGCTAAAAGCCATAAA
Found at i:32118647 original size:31 final size:32
Alignment explanation
Indices: 32118612--32118671 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
32118602 AGAATGGCTA
32118612 AAAGCCATAAGTA-CAGTAATATGATTGGTAC
1 AAAGCCATAAGTAGCAGTAATATGATTGGTAC
* *
32118643 AAAGCCATTAGTAGCAGTGATATGATTGG
1 AAAGCCATAAGTAGCAGTAATATGATTGG
32118672 AACACAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 12 0.46
32 14 0.54
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
AAAGCCATAAGTAGCAGTAATATGATTGGTAC
Found at i:32118688 original size:32 final size:32
Alignment explanation
Indices: 32118612--32118690 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 32
32118602 AGAATGGCTA
* * *
32118612 AAAGCCATAAGTA-CAGTAATATGATTGGTAC
1 AAAGACATCAGTAGCAGTAATATGATTGGAAC
* * *
32118643 AAAGCCATTAGTAGCAGTGATATGATTGGAAC
1 AAAGACATCAGTAGCAGTAATATGATTGGAAC
32118675 ACAA-ACATCAGTAGCA
1 A-AAGACATCAGTAGCA
32118691 TCGCAACAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 12 0.29
32 27 0.66
33 2 0.05
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (32 bp):
AAAGACATCAGTAGCAGTAATATGATTGGAAC
Found at i:32118789 original size:27 final size:27
Alignment explanation
Indices: 32118733--32118795 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
32118723 GAAAGCTGCT
*
32118733 AGTAACAGTATATGTGGCCAAACCATC
1 AGTAACAGTATATGTGGCCAAACCACC
*
32118760 AGTAACAGTGAT-TGTGG-CAGAGCCACC
1 AGTAACAGT-ATATGTGGCCA-AACCACC
32118787 AGT-ACAGTA
1 AGTAACAGTA
32118796 CTTCCTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 7 0.22
27 22 0.69
28 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
AGTAACAGTATATGTGGCCAAACCACC
Found at i:32118885 original size:24 final size:24
Alignment explanation
Indices: 32118858--32118916 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
32118848 GCCATGCTCA
32118858 AAATCAGTCATACAAATCACAAAC
1 AAATCAGTCATACAAATCACAAAC
* **
32118882 AAATCAGTCATACTAATCGTAAAC
1 AAATCAGTCATACAAATCACAAAC
*
32118906 AAACCAGTCAT
1 AAATCAGTCAT
32118917 TTACATCACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (24 bp):
AAATCAGTCATACAAATCACAAAC
Found at i:32119020 original size:53 final size:50
Alignment explanation
Indices: 32118963--32119136 Score: 163
Period size: 53 Copynumber: 3.3 Consensus size: 50
32118953 GGTAAAATAG
* *
32118963 TCATTTACCCTCCAGAGGCATTACGGTCATTTAACCTTACAGGGGTATTTCGA
1 TCATTTACCCT-CAG-GGCATTACGGTCATTTAACC-TACAGGGGCATTACGA
*
32119016 TCATTTATCCCT-ATGGGGCATTACGGTCATTTTAACCTACAAGGGCATTACGA
1 TCATTTA-CCCTCA--GGGCATTACGGTCA-TTTAACCTACAGGGGCATTACGA
* * *
32119069 TCATTTTACCCTACAGGGCATTACAGTCAATTTACCCTACAGGGGCGTTAC-A
1 TCA-TTTACCCT-CAGGGCATTACGGTC-ATTTAACCTACAGGGGCATTACGA
*
32119121 GTCATTTTCCCATCAG
1 -TCATTTACCC-TCAG
32119137 AGGTATTTCG
Statistics
Matches: 103, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
52 11 0.11
53 74 0.72
54 17 0.17
55 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (50 bp):
TCATTTACCCTCAGGGCATTACGGTCATTTAACCTACAGGGGCATTACGA
Found at i:32119061 original size:27 final size:27
Alignment explanation
Indices: 32118962--32119128 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 27
32118952 GGGTAAAATA
* *
32118962 GTCA-TTTACCCTCCAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
32118988 GTCATTTAACCTTACAGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
32119015 ATCA-TTTATCCCTA-TGGGGCATTACG
1 GTCATTTTA-CCCTACAGGGGCATTACG
* *
32119041 GTCATTTTAACCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
32119068 ATCATTTTACCCTACA-GGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
32119094 GTCAATTTACCCTACAGGGGCGTTACA
1 GTCATTTTACCCTACAGGGGCATTACG
32119121 GTCATTTT
1 GTCATTTT
32119129 CCCATCAGAG
Statistics
Matches: 113, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
26 46 0.41
27 67 0.59
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:32119168 original size:27 final size:28
Alignment explanation
Indices: 32119138--32119272 Score: 141
Period size: 27 Copynumber: 4.6 Consensus size: 28
32119128 TCCCATCAGA
32119138 GGTATTTCGATAATTTTACCCATT-GAG
1 GGTATTTCGATAATTTTACCCATTCGAG
* *
32119165 GGTATTTCGCTAATTTTACCAATTAAAGGTATCGAG
1 GGTATTTCGATAATTTTACC-----CA--T-TCGAG
*
32119201 GGTATTTCGGTAATTTTACCCA-TCGAG
1 GGTATTTCGATAATTTTACCCATTCGAG
*
32119228 GGTATTTCGATAATTTTACCC-TTCGAA
1 GGTATTTCGATAATTTTACCCATTCGAG
32119255 GGTATTTCGATAATTTTA
1 GGTATTTCGATAATTTTA
32119273 TGGCCCAAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
27 66 0.72
31 1 0.01
32 1 0.01
34 1 0.01
35 1 0.01
36 22 0.24
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (28 bp):
GGTATTTCGATAATTTTACCCATTCGAG
Found at i:32125613 original size:29 final size:29
Alignment explanation
Indices: 32125572--32125627 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
32125562 AACTTAATAG
*
32125572 ACACATTTACGAACATAGTTCACCAAAAC
1 ACACATATACGAACATAGTTCACCAAAAC
*
32125601 ACACATATGCGAACATAGTTCACCAAA
1 ACACATATACGAACATAGTTCACCAAA
32125628 GAAATAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.45, C:0.27, G:0.09, T:0.20
Consensus pattern (29 bp):
ACACATATACGAACATAGTTCACCAAAAC
Found at i:32127980 original size:23 final size:23
Alignment explanation
Indices: 32127954--32128029 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
32127944 ATAAATGTCT
* *
32127954 CACTGGTATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32127977 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
32128000 CACTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32128023 CACTGAT
1 CACTGAT
32128030 CAATAACACT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32131053 original size:23 final size:23
Alignment explanation
Indices: 32131027--32131102 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
32131017 ATAAGTGCCT
* *
32131027 CACTGGTATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
32131050 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
32131073 CATTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
32131096 CACTGAT
1 CACTGAT
32131103 CAATAACACT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:32148600 original size:7 final size:7
Alignment explanation
Indices: 32148588--32148696 Score: 78
Period size: 7 Copynumber: 15.6 Consensus size: 7
32148578 AGATTTAAAA
32148588 GAGAATT
1 GAGAATT
32148595 GAGAATT
1 GAGAATT
* *
32148602 AATAATT
1 GAGAATT
*
32148609 AAGAATT
1 GAGAATT
*
32148616 GAGGATT
1 GAGAATT
**
32148623 GATTATT
1 GAGAATT
32148630 GAGAATT
1 GAGAATT
32148637 GA-ACATT
1 GAGA-ATT
32148644 GA-AGATT
1 GAGA-ATT
*
32148651 CAGAATT
1 GAGAATT
*
32148658 GAAAATT
1 GAGAATT
*
32148665 GAAAATT
1 GAGAATT
* *
32148672 AAGGATT
1 GAGAATT
*
32148679 GAAAATT
1 GAGAATT
32148686 GAGAATT
1 GAGAATT
32148693 GAGA
1 GAGA
32148697 CTATAGGATT
Statistics
Matches: 80, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
6 1 0.01
7 78 0.98
8 1 0.01
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (7 bp):
GAGAATT
Found at i:32148615 original size:21 final size:21
Alignment explanation
Indices: 32148589--32148692 Score: 93
Period size: 21 Copynumber: 5.0 Consensus size: 21
32148579 GATTTAAAAG
*
32148589 AGAATTGAGAATT-AATAATTA
1 AGAATTGAAAATTGAA-AATTA
** ** *
32148610 AGAATTGAGGATTGATTATTG
1 AGAATTGAAAATTGAAAATTA
* * *
32148631 AGAATTGAACATTGAAGATTC
1 AGAATTGAAAATTGAAAATTA
32148652 AGAATTGAAAATTGAAAATTA
1 AGAATTGAAAATTGAAAATTA
* *
32148673 AGGATTGAAAATTGAGAATT
1 AGAATTGAAAATTGAAAATT
32148693 GAGACTATAG
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
21 67 0.99
22 1 0.01
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (21 bp):
AGAATTGAAAATTGAAAATTA
Found at i:32150209 original size:18 final size:18
Alignment explanation
Indices: 32150186--32150234 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
32150176 AATCGTGTCG
32150186 TTCATTTTCAAAACATTA
1 TTCATTTTCAAAACATTA
* * *
32150204 TTCATTTACAAATCGTTA
1 TTCATTTTCAAAACATTA
*
32150222 TTCAATTTCAAAA
1 TTCATTTTCAAAA
32150235 TGTTTTCTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (18 bp):
TTCATTTTCAAAACATTA
Found at i:32162880 original size:5 final size:5
Alignment explanation
Indices: 32162861--32162903 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
32162851 GTAAGACATT
* * * *
32162861 ATATG ACATG ATATG TTATG ATATG ATATG ATAAG TTATG ATA
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATA
32162904 CTATATGAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (5 bp):
ATATG
Found at i:32162911 original size:20 final size:20
Alignment explanation
Indices: 32162861--32162903 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
32162851 GTAAGACATT
* *
32162861 ATATGACATGATATGTTATG
1 ATATGATATGATAAGTTATG
32162881 ATATGATATGATAAGTTATG
1 ATATGATATGATAAGTTATG
32162901 ATA
1 ATA
32162904 CTATATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (20 bp):
ATATGATATGATAAGTTATG
Found at i:32165831 original size:26 final size:25
Alignment explanation
Indices: 32165781--32165834 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
32165771 GGTATAAAAG
32165781 TATGAGTCAAAAGTATATTTGTTTT
1 TATGAGTCAAAAGTATATTTGTTTT
*
32165806 TATGAGTCATAAAGTA-GTTTGTTTT
1 TATGAGTCA-AAAGTATATTTGTTTT
32165831 TATG
1 TATG
32165835 TAAAGGAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.48
Consensus pattern (25 bp):
TATGAGTCAAAAGTATATTTGTTTT
Found at i:32167631 original size:74 final size:74
Alignment explanation
Indices: 32167510--32167649 Score: 235
Period size: 74 Copynumber: 1.9 Consensus size: 74
32167500 GAAAGAGAAG
* *
32167510 GAGAATGAGAATGAGACTAGGCTAACGCTTAGGTTTTTCTTGAGGAAGAATGAGATCTTTAGTCT
1 GAGAAAGAGAATGAGACTAGGCTAACGCTTAGGTTTTTCTTGAGGAAGAAGGAGATCTTTAGTCT
32167575 CAAAAGCAA
66 CAAAAGCAA
* * *
32167584 GAGAAAGAGAATGAGACTAGGCTAATGCTTAGGTTTTTCTTGGGGAAGAAGGAGATCTTTATTCT
1 GAGAAAGAGAATGAGACTAGGCTAACGCTTAGGTTTTTCTTGAGGAAGAAGGAGATCTTTAGTCT
32167649 C
66 C
32167650 TTGTACTCTG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (74 bp):
GAGAAAGAGAATGAGACTAGGCTAACGCTTAGGTTTTTCTTGAGGAAGAAGGAGATCTTTAGTCT
CAAAAGCAA
Found at i:32181628 original size:32 final size:32
Alignment explanation
Indices: 32181587--32181647 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
32181577 AGGTTTGTTT
32181587 GTTTGTTTGATTGTCAGTAAAATATTTTTAGG
1 GTTTGTTTGATTGTCAGTAAAATATTTTTAGG
32181619 GTTTGTTTGATTGTCAGTAAAATATTTTT
1 GTTTGTTTGATTGTCAGTAAAATATTTTT
32181648 CGTAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.25, C:0.03, G:0.20, T:0.52
Consensus pattern (32 bp):
GTTTGTTTGATTGTCAGTAAAATATTTTTAGG
Found at i:32193010 original size:6 final size:6
Alignment explanation
Indices: 32192996--32193059 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
32192986 TTATAATGAT
* *
32192996 AAAAG- AAAAGA AAAAGA AAAATGGA AACAG- AGAAGCA AAAATGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAA--GA AAAAGA AAAAG-A AAAA-GA AAAAGA
*
32193046 AAAAGA GAAAGA AA
1 AAAAGA AAAAGA AA
32193060 GAAAGGAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
5 8 0.17
6 25 0.53
7 8 0.17
8 6 0.13
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:32193047 original size:25 final size:25
Alignment explanation
Indices: 32192996--32193054 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
32192986 TTATAATGAT
*
32192996 AAAAGAAAAG-AAAAAGAAAAATGGA
1 AAAAGAGAAGCAAAAAGAAAAA-GGA
*
32193021 AACAGAGAAGCAAAAATGAAAAA-GA
1 AAAAGAGAAGCAAAAA-GAAAAAGGA
32193046 AAAAGAGAA
1 AAAAGAGAA
32193055 AGAAAGAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 18 0.62
26 5 0.17
27 6 0.21
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.03
Consensus pattern (25 bp):
AAAAGAGAAGCAAAAAGAAAAAGGA
Found at i:32193314 original size:24 final size:24
Alignment explanation
Indices: 32193286--32193332 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
32193276 ATTGAAATGG
32193286 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
32193310 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
32193333 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:32198243 original size:42 final size:42
Alignment explanation
Indices: 32198134--32198292 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
32198124 GGCTCGTACA
* * * *
32198134 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTAAAT-ATG
* * * *
32198177 ATGCCACTGGCCCAGACAGGGTCTTACACGTAATTATATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTAAATATG
*
32198219 ACGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AAT-T-AAATATG
* * *
32198263 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
32198293 ATATCACATT
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
42 29 0.30
43 35 0.36
44 29 0.30
45 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATTAAATATG
Found at i:32210360 original size:50 final size:50
Alignment explanation
Indices: 32210227--32210409 Score: 186
Period size: 50 Copynumber: 3.5 Consensus size: 50
32210217 CTATATTGCA
* * * * ** * *
32210227 AATGCCATATCCCAGATATGGTCTTACATGAGAATTCTCATATCGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCGGTACC
* * *
32210277 CATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTACC
1 AATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCGGTACC
* **
32210327 AATGCCATGTCCCAGACATGGTCTTACGTGGGACCTTTCATAACCTCAATAATGCC
1 AATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT---CTCGGT-A--CC
32210383 AATGCCATGTCCCAGACATGGTCTTAC
1 AATGCCATGTCCCAGACATGGTCTTAC
32210410 AAGGGGTCTC
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
50 76 0.69
53 4 0.04
54 1 0.01
56 29 0.26
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
AATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTCGGTACC
Found at i:32211936 original size:27 final size:27
Alignment explanation
Indices: 32211897--32212074 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32211887 ATATTGAGTC
* * *
32211897 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32211924 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32211951 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32211979 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * **
32212006 CGCACACTTAGTGC-ATCGTATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32212033 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32212060 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32212075 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32212036 original size:82 final size:81
Alignment explanation
Indices: 32211918--32212073 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
32211908 TGCTACATAA
*
32211918 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32211983 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32212000 TCAATTCGCACACTTAGTGC-ATCGTATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CGTAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32212064 CACTTAGTGC
65 CACTTAGTGC
32212074 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32220005 original size:27 final size:27
Alignment explanation
Indices: 32219975--32220152 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32219965 ATATTGAGTC
* * *
32219975 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
32220002 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
32220029 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
32220057 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
**
32220084 CGCACACTTAGTGC-ATCATAATCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
32220111 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
32220138 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32220153 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:32220114 original size:82 final size:81
Alignment explanation
Indices: 32219996--32220151 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
32219986 TGCTATATAA
* *
32219996 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32220061 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* **
32220078 TCAATTCGCACACTTAGTGC-ATCATAATCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32220142 CACTTAGTGC
65 CACTTAGTGC
32220152 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32224933 original size:37 final size:37
Alignment explanation
Indices: 32224883--32224961 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32224873 TTATTACGAA
* *
32224883 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
32224920 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
32224957 GTCTT
1 GTCTT
32224962 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:32225158 original size:47 final size:47
Alignment explanation
Indices: 32225080--32225617 Score: 923
Period size: 47 Copynumber: 11.4 Consensus size: 47
32225070 CCCTTCGGGA
* * * * * * *
32225080 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32225127 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32225174 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225221 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225268 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225315 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32225362 CTTATCACAGATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225411 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32225458 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225505 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32225552 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32225599 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32225618 GTCTTGGCTG
Statistics
Matches: 467, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 421 0.90
49 46 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32234060 original size:120 final size:120
Alignment explanation
Indices: 32233847--32234086 Score: 435
Period size: 120 Copynumber: 2.0 Consensus size: 120
32233837 GAAATCCATA
* *
32233847 GTTACGCATTCCCATTTCCAAAGAGGAATCTTAACCGGCTGCAACAAACCCGAAGGTAACTGATG
1 GTTACGCATTCCCATTTCCAAAGAGGAATCTTAACCGGCTACAACAAACCCAAAGGTAACTGATG
*
32233912 CTCAGACTTAACCTGCTGGCAAGTAGACATCTGCCCACAAAATTAGTAACCTCAC
66 CTCAGACTTAACCTACTGGCAAGTAGACATCTGCCCACAAAATTAGTAACCTCAC
* *
32233967 GTTACGCGTTCCCATTTCCAAAGAGGAATCTTAACCGGCTACAGCAAACCCAAAGGTAACTGATG
1 GTTACGCATTCCCATTTCCAAAGAGGAATCTTAACCGGCTACAACAAACCCAAAGGTAACTGATG
32234032 CTCAGACTTAACCTACTGGCAAGTAGACATCTGCCCACAAAATTAGTAACCTCAC
66 CTCAGACTTAACCTACTGGCAAGTAGACATCTGCCCACAAAATTAGTAACCTCAC
32234087 ATTTCAACCT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 115 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (120 bp):
GTTACGCATTCCCATTTCCAAAGAGGAATCTTAACCGGCTACAACAAACCCAAAGGTAACTGATG
CTCAGACTTAACCTACTGGCAAGTAGACATCTGCCCACAAAATTAGTAACCTCAC
Found at i:32239810 original size:343 final size:343
Alignment explanation
Indices: 32239180--32239828 Score: 1034
Period size: 343 Copynumber: 1.9 Consensus size: 343
32239170 CATCGTTCCT
* *
32239180 AGTCGCTCGGTCGTGTGACCCAGTCTCAGTGACAAGCGACACTAGCGTCTCACTAGTGTCTAGAC
1 AGTCGCTCGATCATGTGACCCAGTCTCAGTGACAAGCGACACTAGCGTCTCACTAGTGTCTAGAC
* * *
32239245 TTGGCATACTCTCCAGTGAAGAGGACTTAGCTCGAGCTCCTCTACGACCTCTACCTCGACCTCTA
66 TTGGCATACTCTCCAGTAAAGAGGACTCAGCTCGAGCCCCTCTACGACCTCTACCTCGACCTCTA
* *
32239310 GTACCCCGTCCGCGAGTACCTCATGCGCTCATCGTCTAGTAGTGCTTATCTGTATTAAAAGTTTT
131 GTACCCCGTCCGCCAGTACCTCATGCGCTCATCGTCTAGTAGTGCTTATATGTATTAAAAGTTTT
32239375 ATGAATCAGATTACAATTCAATAGTTATTAGCAGATGTTTTATGGAAACATTTTAGTAGTTCAGA
196 ATGAATCAGATTACAATTCAATAGTTATTAGCAGATGTTTTATGGAAACATTTTAGTAGTTCAGA
*
32239440 GTTTGTTTTCGTACAACGCAATGTCTACCAGTGTTTATCGATTTTATTACAGTATCATTATACAC
261 GTTTGTTTTCATACAACGCAATGTCTACCAGTGTTTATCGATTTTATTACAGTATCATTATACAC
32239505 TAACCTGAGTGTTTCCCC
326 TAACCTGAGTGTTTCCCC
* * * * *
32239523 AGTCGCTCGATCATGTGACCCAGTCTCAGTGACAGGCGACACTGGCGTCTCGCTATTGTCTAGAT
1 AGTCGCTCGATCATGTGACCCAGTCTCAGTGACAAGCGACACTAGCGTCTCACTAGTGTCTAGAC
* * * * *
32239588 TTGGCATATTGC-CCAGTAAAGAGGACTCAGCTCGAGCCCCTCTATGGCCTTTACCTCGGCCTCT
66 TTGGCATACT-CTCCAGTAAAGAGGACTCAGCTCGAGCCCCTCTACGACCTCTACCTCGACCTCT
*
32239652 AGTACCCCGTCC-CCAGTACCTCGTGCGCTCATCGTCTAGTAGTGCTTATATGTATTAAAAGTTT
130 AGTACCCCGTCCGCCAGTACCTCATGCGCTCATCGTCTAGTAGTGCTTATATGTATTAAAAGTTT
* * *
32239716 TATGAATCAGTTTACAGTTCAATAGTTATTAGCAGATGTTTTATGGAAATAGTTTTAGTAGTTCA
195 TATGAATCAGATTACAATTCAATAGTTATTAGCAGATGTTTTATGGAAACA-TTTTAGTAGTTCA
* *
32239781 GAGTTTGTTTTCATA-AGACGCAGTGTCTACCAGTGTTTATCGGTTTTA
259 GAGTTTGTTTTCATACA-ACGCAATGTCTACCAGTGTTTATCGATTTTA
32239829 CCACAGTAAC
Statistics
Matches: 279, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
342 98 0.35
343 180 0.65
344 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (343 bp):
AGTCGCTCGATCATGTGACCCAGTCTCAGTGACAAGCGACACTAGCGTCTCACTAGTGTCTAGAC
TTGGCATACTCTCCAGTAAAGAGGACTCAGCTCGAGCCCCTCTACGACCTCTACCTCGACCTCTA
GTACCCCGTCCGCCAGTACCTCATGCGCTCATCGTCTAGTAGTGCTTATATGTATTAAAAGTTTT
ATGAATCAGATTACAATTCAATAGTTATTAGCAGATGTTTTATGGAAACATTTTAGTAGTTCAGA
GTTTGTTTTCATACAACGCAATGTCTACCAGTGTTTATCGATTTTATTACAGTATCATTATACAC
TAACCTGAGTGTTTCCCC
Found at i:32240180 original size:18 final size:18
Alignment explanation
Indices: 32240156--32240203 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
32240146 TGTCATTCCT
32240156 TTTCAAAACATTATTC-A
1 TTTCAAAACATTATTCAA
* *
32240173 TTTACAAATCGTTATTCAA
1 TTT-CAAAACATTATTCAA
32240192 TTTCAAAACATT
1 TTTCAAAACATT
32240204 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.72
19 4 0.16
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.42
Consensus pattern (18 bp):
TTTCAAAACATTATTCAA
Found at i:32245827 original size:16 final size:16
Alignment explanation
Indices: 32245806--32245841 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32245796 TGGTTCGCTA
*
32245806 TAATGGAATAGAGCTG
1 TAATGGAATAGAACTG
32245822 TAATGGAATAGAACTG
1 TAATGGAATAGAACTG
32245838 TAAT
1 TAAT
32245842 AGTAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (16 bp):
TAATGGAATAGAACTG
Found at i:32245887 original size:45 final size:44
Alignment explanation
Indices: 32245823--32245911 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 44
32245813 ATAGAGCTGT
32245823 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
32245868 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
32245912 GATGATGTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 1 0.02
44 19 0.45
45 22 0.52
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:32246135 original size:55 final size:54
Alignment explanation
Indices: 32246005--32246157 Score: 136
Period size: 55 Copynumber: 2.8 Consensus size: 54
32245995 TATTGTTATT
* *
32246005 AAATTTTAATA-AGATTATTAATATAAATAATTTAATAAAATAATAAATAATTTAACC
1 AAATTTTAATATA-ATTATTAA-AT--ATAAATTAATAAAATAATAAATAATTTAACA
* * * *
32246062 ATATTTTAACAATTATTATTAAATATAAATTAATAAAATAATATAA-AATTTAATA
1 AAATTTTAA-TATAATTATTAAATATAAATTAATAAAATAATA-AATAATTTAACA
* *
32246117 AAATTCTTAATATAATTATT--ATATGAATTAA-AAAATCATAA
1 AAATT-TTAATATAATTATTAAATATAAATTAATAAAATAATAA
32246158 TATATAATAC
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
51 1 0.01
52 8 0.10
53 10 0.12
55 37 0.46
56 6 0.07
57 10 0.12
58 9 0.11
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (54 bp):
AAATTTTAATATAATTATTAAATATAAATTAATAAAATAATAAATAATTTAACA
Found at i:32246193 original size:20 final size:20
Alignment explanation
Indices: 32246084--32246194 Score: 60
Period size: 20 Copynumber: 5.8 Consensus size: 20
32246074 TTATTATTAA
*
32246084 ATATAAATTAATAAAATAAT
1 ATATAATTTAATAAAATAAT
*
32246104 ATAAAATTTAATAAAAT--T
1 ATATAATTTAATAAAATAAT
* * *
32246122 CT-TAA--T-AT-AATTATT
1 ATATAATTTAATAAAATAAT
*
32246137 ATATGAA-TTAAAAAATCATAAT
1 ATAT-AATTTAATAAA--ATAAT
*
32246159 ATATAATACT-ATAAAATAAT
1 ATATAAT-TTAATAAAATAAT
32246179 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
32246195 ATTCTTAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 24
0.65 0.12 0.23
Matches are distributed among these distances:
13 3 0.04
14 2 0.03
15 3 0.04
16 1 0.01
17 4 0.06
18 3 0.04
19 2 0.03
20 35 0.52
21 2 0.03
22 11 0.16
23 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.38
Consensus pattern (20 bp):
ATATAATTTAATAAAATAAT
Found at i:32255868 original size:18 final size:19
Alignment explanation
Indices: 32255845--32255896 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
32255835 AAATGAAGAA
32255845 ATGGTATCGATATAAAAT-
1 ATGGTATCGATATAAAATC
* *
32255863 ATGGTATTGATA-AAATTC
1 ATGGTATCGATATAAAATC
32255881 AGTAGGTATCGATATA
1 A-T-GGTATCGATATA
32255897 TTTCTAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 1 0.04
20 9 0.33
21 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (19 bp):
ATGGTATCGATATAAAATC
Found at i:32256573 original size:30 final size:31
Alignment explanation
Indices: 32256507--32256576 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
32256497 TTAGTTTTAG
32256507 ATAATTTTATTTAATTTGATTTTTTGTTTAAT
1 ATAATTTTATTTAATTTGATTTTTTG-TTAAT
32256539 -TAA-TTTATTTTAATTTGATTTTTTG-TAAT
1 ATAATTTTA-TTTAATTTGATTTTTTGTTAAT
32256568 ATAATTTTA
1 ATAATTTTA
32256577 AATTACTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
29 4 0.11
30 7 0.20
31 24 0.69
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (31 bp):
ATAATTTTATTTAATTTGATTTTTTGTTAAT
Found at i:32256845 original size:35 final size:35
Alignment explanation
Indices: 32256799--32256884 Score: 136
Period size: 35 Copynumber: 2.5 Consensus size: 35
32256789 GTTCAAGATT
*
32256799 CAGTAGATCATTTCCATGATGCCACTCCGTAGAGC
1 CAGTAGATCATTTCCATGATGCCACTCCGTAGACC
* * *
32256834 CAGTAGATCATTTTCATGATGCCGCTTCGTAGACC
1 CAGTAGATCATTTCCATGATGCCACTCCGTAGACC
32256869 CAGTAGATCATTTCCA
1 CAGTAGATCATTTCCA
32256885 ACCAAACTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (35 bp):
CAGTAGATCATTTCCATGATGCCACTCCGTAGACC
Found at i:32258093 original size:25 final size:25
Alignment explanation
Indices: 32258065--32258112 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
32258055 ATACCATTCA
*
32258065 ATAACAACAA-AATACAATACGTAGT
1 ATAA-AACAATAACACAATACGTAGT
*
32258090 ATAAATCAATAACACAATACGTA
1 ATAAAACAATAACACAATACGTA
32258113 CCATTGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.21
Consensus pattern (25 bp):
ATAAAACAATAACACAATACGTAGT
Found at i:32258982 original size:9 final size:9
Alignment explanation
Indices: 32258964--32259138 Score: 208
Period size: 9 Copynumber: 19.4 Consensus size: 9
32258954 TTTGGTTAAA
32258964 AATTAACCG
1 AATTAACCG
*
32258973 AATTACCCG
1 AATTAACCG
32258982 AATTAACCG
1 AATTAACCG
* *
32258991 GATTAATCG
1 AATTAACCG
* *
32259000 GATTACCCG
1 AATTAACCG
32259009 AATTAACCG
1 AATTAACCG
32259018 AATT-ACCTG
1 AATTAACC-G
*
32259027 AATTAACCA
1 AATTAACCG
32259036 AATTAACCG
1 AATTAACCG
32259045 AATTAACCG
1 AATTAACCG
*
32259054 AATTACCCG
1 AATTAACCG
32259063 AATTAACCG
1 AATTAACCG
*
32259072 GATTAACCG
1 AATTAACCG
*
32259081 GATTAACCG
1 AATTAACCG
* *
32259090 GATTACCCG
1 AATTAACCG
*
32259099 AATTAACTG
1 AATTAACCG
*
32259108 AATTACCCG
1 AATTAACCG
*
32259117 AATTAACCA
1 AATTAACCG
32259126 AATTAACCG
1 AATTAACCG
32259135 AATT
1 AATT
32259139 GAATCACTAC
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
8 3 0.02
9 136 0.96
10 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:32259280 original size:18 final size:18
Alignment explanation
Indices: 32259240--32259283 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
32259230 AATTTTTATG
**
32259240 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
32259258 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
32259276 CTTGGGTT
1 ATTGGGTT
32259284 TGGATTGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:32262773 original size:17 final size:17
Alignment explanation
Indices: 32262748--32262790 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
32262738 TTTATTTAAC
*
32262748 AATACTTTTATCTCAAA
1 AATATTTTTATCTCAAA
32262765 AATATTTTTTTATCTCAAA
1 AATA--TTTTTATCTCAAA
*
32262784 AGTATTT
1 AATATTT
32262791 CTTAAGAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 7 0.32
19 15 0.68
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (17 bp):
AATATTTTTATCTCAAA
Found at i:32262777 original size:19 final size:19
Alignment explanation
Indices: 32262753--32262790 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32262743 TTAACAATAC
32262753 TTTTATCTCAAAAATATTT
1 TTTTATCTCAAAAATATTT
*
32262772 TTTTATCTCAAAAGTATTT
1 TTTTATCTCAAAAATATTT
32262791 CTTAAGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTTATCTCAAAAATATTT
Found at i:32263554 original size:19 final size:19
Alignment explanation
Indices: 32263527--32263563 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32263517 AAATTTTGGT
32263527 ATTAATATAATATTAAAAA
1 ATTAATATAATATTAAAAA
*
32263546 ATTATTATAATATTAAAA
1 ATTAATATAATATTAAAA
32263564 CTTTAGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTAATATAATATTAAAAA
Found at i:32263573 original size:19 final size:19
Alignment explanation
Indices: 32263527--32263573 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
32263517 AAATTTTGGT
*
32263527 ATTAATATAATATTAAAAA
1 ATTAGTATAATATTAAAAA
* *
32263546 ATTATTATAATATTAAAAC
1 ATTAGTATAATATTAAAAA
*
32263565 TTTAGTATA
1 ATTAGTATA
32263574 TCTTTTTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTAGTATAATATTAAAAA
Found at i:32267927 original size:24 final size:23
Alignment explanation
Indices: 32267895--32267964 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 23
32267885 GGGTAGGATT
*
32267895 TGATTCTGTATGTGATATTGCATA
1 TGATTCTGTATCTGA-ATTGCATA
* ** *
32267919 TGATTCTGTATTTGAGATTATATT
1 TGATTCTGTATCTGA-ATTGCATA
*
32267943 TGAATCTGTATCTGAATTGCAT
1 TGATTCTGTATCTGAATTGCAT
32267965 TTGAAAACGT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 5 0.14
24 32 0.86
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.47
Consensus pattern (23 bp):
TGATTCTGTATCTGAATTGCATA
Found at i:32292327 original size:20 final size:20
Alignment explanation
Indices: 32292258--32292347 Score: 74
Period size: 20 Copynumber: 4.2 Consensus size: 20
32292248 ATACATGTTA
*
32292258 TGTTCTGTTCTGCTCCATTC
1 TGTTCTGTTCTGCTCTATTC
32292278 TGTTCTGTTCTGCTCTAATCTAC
1 TGTTCTGTTCTGCTCT-AT-T-C
* *
32292301 TCCGTTCTGTTATGTTCTATTC
1 T--GTTCTGTTCTGCTCTATTC
* *
32292323 TGTTCAGTAT-TGCTCTACTC
1 TGTTCTGT-TCTGCTCTATTC
32292343 TGTTC
1 TGTTC
32292348 CATCTTGTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
20 34 0.59
21 3 0.05
22 3 0.05
23 3 0.05
24 2 0.03
25 13 0.22
ACGTcount: A:0.10, C:0.26, G:0.14, T:0.50
Consensus pattern (20 bp):
TGTTCTGTTCTGCTCTATTC
Found at i:32292347 original size:30 final size:29
Alignment explanation
Indices: 32292313--32292386 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 29
32292303 CGTTCTGTTA
32292313 TGTTCTATTCTGTTCAGTAT-TGCTCTACTC
1 TGTTCTATTCTGTTCAGT-TCTGCTCTA-TC
* * *
32292343 TGTTCCA-TCTTGTTCTGTTCTGCTCTATT
1 TGTTCTATTC-TGTTCAGTTCTGCTCTATC
32292372 TGGTTCTATTCTGTT
1 T-GTTCTATTCTGTT
32292387 TGAATTGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
29 5 0.14
30 29 0.81
31 2 0.06
ACGTcount: A:0.09, C:0.22, G:0.15, T:0.54
Consensus pattern (29 bp):
TGTTCTATTCTGTTCAGTTCTGCTCTATC
Found at i:32292364 original size:20 final size:20
Alignment explanation
Indices: 32292314--32292386 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 20
32292304 GTTCTGTTAT
32292314 GTTCTATTCTGTT-CAGTATT-
1 GTTCTATTCTGTTCCA-T-TTG
* *
32292334 GCTCTACTCTGTTCCATCTT-
1 GTTCTATTCTGTTCCAT-TTG
* * *
32292354 GTTCTGTTCTGCTCTATTTG
1 GTTCTATTCTGTTCCATTTG
32292374 GTTCTATTCTGTT
1 GTTCTATTCTGTT
32292387 TGAATTGCAT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
19 2 0.05
20 37 0.90
21 2 0.05
ACGTcount: A:0.10, C:0.22, G:0.15, T:0.53
Consensus pattern (20 bp):
GTTCTATTCTGTTCCATTTG
Found at i:32300355 original size:27 final size:27
Alignment explanation
Indices: 32300325--32300485 Score: 187
Period size: 27 Copynumber: 6.0 Consensus size: 27
32300315 TTATCTCCTA
**
32300325 GGGGTATAACAATCATTTTACCCTATG
1 GGGGTATTTCAATCATTTTACCCTATG
*
32300352 GGGGTATTTCAACCATTTTACCCTATG
1 GGGGTATTTCAATCATTTTACCCTATG
** * *
32300379 GGGGTATTTCGGTCATTTTATCTTATG
1 GGGGTATTTCAATCATTTTACCCTATG
* * * **
32300406 AGGTTATTTCGATCATTTTACCCTACA
1 GGGGTATTTCAATCATTTTACCCTATG
*
32300433 GGGGTATTTCAATCATTTTACCTTATG
1 GGGGTATTTCAATCATTTTACCCTATG
* *
32300460 AGGGTATTTCAGTCATTTTACCCTAT
1 GGGGTATTTCAATCATTTTACCCTAT
32300486 AAGGTTCTCG
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCAATCATTTTACCCTATG
Found at i:32300384 original size:54 final size:54
Alignment explanation
Indices: 32300323--32300486 Score: 211
Period size: 54 Copynumber: 3.0 Consensus size: 54
32300313 TTTTATCTCC
** * * *
32300323 TAGGGGTATAACAATCATTTTACCCTATGGGGGTATTTCAACCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
* ** * * *
32300377 TGGGGGTATTTCGGTCATTTTATCTTATGAGGTTATTTCGATCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
* *
32300431 CAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAGTCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
32300485 TA
1 TA
32300487 AGGTTCTCGA
Statistics
Matches: 90, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (54 bp):
TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
Found at i:32300491 original size:81 final size:81
Alignment explanation
Indices: 32300336--32300491 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
32300326 GGGTATAACA
** * * *
32300336 ATCATTTTACCCTATGGGGGTATTTCAACCATTTTACCCTATGGGGGTATTTCGGTCATTTTATC
1 ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
* *
32300401 TTATGAGGTTATTTCG
66 CTATAAGGTTATTTCG
* *
32300417 ATCATTTTACCCTACAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAGTCATTTTACC
1 ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
32300482 CTATAAGGTT
66 CTATAAGGTT
32300492 CTCGATGCAG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.42
Consensus pattern (81 bp):
ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
CTATAAGGTTATTTCG
Found at i:32302423 original size:22 final size:22
Alignment explanation
Indices: 32302404--32302479 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
32302394 TATCACCCAT
*
32302404 AAAACATAAACAATTTACCCTC
1 AAAACACAAACAATTTACCCTC
* *
32302426 GAAACACAACCAATTTACCCTC
1 AAAACACAAACAATTTACCCTC
** * *
32302448 CGAACACAAGCAAATGTACCCTC
1 AAAACACAAAC-AATTTACCCTC
*
32302471 CAAACACAA
1 AAAACACAA
32302480 CCATATATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 27 0.60
23 18 0.40
ACGTcount: A:0.46, C:0.33, G:0.05, T:0.16
Consensus pattern (22 bp):
AAAACACAAACAATTTACCCTC
Found at i:32302467 original size:23 final size:22
Alignment explanation
Indices: 32302419--32302560 Score: 92
Period size: 23 Copynumber: 6.2 Consensus size: 22
32302409 ATAAACAATT
* *
32302419 TACCCT-CGAAACACAACCAATT
1 TACCCTCCG-AACACAACAAATG
32302441 TACCCTCCGAACACAAGCAAATG
1 TACCCTCCGAACACAA-CAAATG
* *
32302464 TACCCTCCAAACACAACCATATATA
1 TACCCTCCGAACACAA-CA-A-ATG
* *
32302489 TAACCTCTGAACACAACAAA-G
1 TACCCTCCGAACACAACAAATG
* * *
32302510 TATTCCCTCCAAACACAACCAATT
1 TA--CCCTCCGAACACAACAAATG
*
32302534 TACCC-CTCGAACATAACCAAATG
1 TACCCTC-CGAACACAA-CAAATG
32302557 TACC
1 TACC
32302561 TGCAAAACAC
Statistics
Matches: 93, Mismatches: 18, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
21 3 0.03
22 24 0.26
23 46 0.49
24 5 0.05
25 15 0.16
ACGTcount: A:0.41, C:0.35, G:0.06, T:0.18
Consensus pattern (22 bp):
TACCCTCCGAACACAACAAATG
Found at i:32302518 original size:48 final size:45
Alignment explanation
Indices: 32302419--32302560 Score: 155
Period size: 48 Copynumber: 3.1 Consensus size: 45
32302409 ATAAACAATT
* *
32302419 TACCCTCGAAACACAACCAATTTACCCTCCGAACACAAGCAAATG
1 TACCCTCCAAACACAACCAATTTAACCTCCGAACACAAGCAAATG
*
32302464 TACCCTCCAAACACAACCATATATATAACCTCTGAACACAA-CAAA-G
1 TACCCTCCAAACACAACCA-AT-T-TAACCTCCGAACACAAGCAAATG
* * *
32302510 TATTCCCTCCAAACACAACCAATTT-ACCCCTCGAACATAACCAAATG
1 TA--CCCTCCAAACACAACCAATTTAACCTC-CGAACACAAGCAAATG
32302557 TACC
1 TACC
32302561 TGCAAAACAC
Statistics
Matches: 83, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
44 4 0.05
45 28 0.34
46 10 0.12
47 10 0.12
48 31 0.37
ACGTcount: A:0.41, C:0.35, G:0.06, T:0.18
Consensus pattern (45 bp):
TACCCTCCAAACACAACCAATTTAACCTCCGAACACAAGCAAATG
Found at i:32302583 original size:93 final size:94
Alignment explanation
Indices: 32302419--32302631 Score: 263
Period size: 93 Copynumber: 2.3 Consensus size: 94
32302409 ATAAACAATT
* * *
32302419 TACCCTCGAAACACAACCAATTTA-CCCTCCGAACACAAGCAAATGTACCCTCCAAACACAACCA
1 TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCTCAAAACACAACCA
* **
32302483 TATATATAACCTCTGAACACAA-CAAAGTA
66 TACATATAACCTCCAAACACAATC-AAGTA
* * *
32302512 TTCCCTCCAAACACAACCAATTTACCCCT-CGAACATAACCAAATGTA-CCTGCAAAACACTACC
1 TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCT-CAAAACACAACC
* *
32302575 ATACATATAATCTCCAAACATAATCAAGTA
65 ATACATATAACCTCCAAACACAATCAAGTA
* *
32302605 TACCCTCCAAACATAACCAATATACCC
1 TACCCTCCAAACACAACCAATTTACCC
32302632 TTTAACATAT
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
92 3 0.03
93 95 0.92
94 5 0.05
ACGTcount: A:0.42, C:0.34, G:0.05, T:0.19
Consensus pattern (94 bp):
TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCTCAAAACACAACCA
TACATATAACCTCCAAACACAATCAAGTA
Found at i:32302612 original size:23 final size:22
Alignment explanation
Indices: 32302586--32302632 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
32302576 TACATATAAT
*
32302586 CTCCAAACATAATCAAGTATACC
1 CTCCAAACATAACCAA-TATACC
32302609 CTCCAAACATAACCAATATACC
1 CTCCAAACATAACCAATATACC
32302631 CT
1 CT
32302633 TTAACATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.21
Consensus pattern (22 bp):
CTCCAAACATAACCAATATACC
Found at i:32312987 original size:43 final size:43
Alignment explanation
Indices: 32312917--32313093 Score: 221
Period size: 43 Copynumber: 4.1 Consensus size: 43
32312907 TAAAATTCAA
* * *
32312917 GTTCTTTAGTGGCGTTTATGGGGAAAGCGCCGCTAAAGGTCAT
1 GTTCTTTAGTGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
* * *
32312960 GTTCTTTAGTGGCATTTGTGGGAAAAGCATCGCTACAGGTCAT
1 GTTCTTTAGTGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
* * * * *
32313003 ATTCTATAGCT-TCGTTTGTGGGGAAACCACCGCTAAAGGTCAT
1 GTTCTTTAG-TGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
**
32313046 GTTCTTTAACGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
1 GTTCTTTAGTGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
32313089 GTTCT
1 GTTCT
32313094 ACAGCGACGT
Statistics
Matches: 111, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
43 110 0.99
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
GTTCTTTAGTGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCAT
Found at i:32313074 original size:86 final size:86
Alignment explanation
Indices: 32312929--32313094 Score: 251
Period size: 86 Copynumber: 1.9 Consensus size: 86
32312919 TCTTTAGTGG
* * ** *
32312929 CGTTTATGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGTGGCATTTGTGGGAAAAGCATCGCT
1 CGTTTATGGGGAAACCACCGCTAAAGGTCATGTTCTTTAACGGCATTTGTGGGAAAAGCACCGCT
*
32312994 ACAGGTCATATTCTATAGCTT
66 AAAGGTCATATTCTATAGCTT
* *
32313015 CGTTTGTGGGGAAACCACCGCTAAAGGTCATGTTCTTTAACGGCGTTTGTGGGAAAAGCACCGCT
1 CGTTTATGGGGAAACCACCGCTAAAGGTCATGTTCTTTAACGGCATTTGTGGGAAAAGCACCGCT
*
32313080 AAAGGTCATGTTCTA
66 AAAGGTCATATTCTA
32313095 CAGCGACGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (86 bp):
CGTTTATGGGGAAACCACCGCTAAAGGTCATGTTCTTTAACGGCATTTGTGGGAAAAGCACCGCT
AAAGGTCATATTCTATAGCTT
Found at i:32314015 original size:23 final size:23
Alignment explanation
Indices: 32313984--32314029 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32313974 ATATAAGAGG
*
32313984 TAATTCCATCAAAATTAGCAACT
1 TAATACCATCAAAATTAGCAACT
* *
32314007 TAATACCATCAACATTCGCAACT
1 TAATACCATCAAAATTAGCAACT
32314030 ACATATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.26, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATACCATCAAAATTAGCAACT
Found at i:32322722 original size:18 final size:18
Alignment explanation
Indices: 32322688--32322722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32322678 AGGATTGCAA
* *
32322688 GTTTCCATTTTCGTTTTC
1 GTTTCCATTTCCATTTTC
32322706 GTTTCCATTTCCATTTT
1 GTTTCCATTTCCATTTT
32322723 TGGAAACCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.23, G:0.09, T:0.60
Consensus pattern (18 bp):
GTTTCCATTTCCATTTTC
Found at i:32327733 original size:20 final size:19
Alignment explanation
Indices: 32327696--32327754 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
32327686 CTAACTTCAC
*
32327696 AAGTCAAAAAAT-TATAAA
1 AAGTCTAAAAATATATAAA
32327714 AAGTCTAAAGAATATATAAA
1 AAGTCTAAA-AATATATAAA
*
32327734 GAA-TTTAAAAA-ATATAAA
1 -AAGTCTAAAAATATATAAA
32327752 AAG
1 AAG
32327755 ACCCTAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 2 0.06
18 15 0.43
19 5 0.14
20 11 0.31
21 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.24
Consensus pattern (19 bp):
AAGTCTAAAAATATATAAA
Found at i:32327755 original size:20 final size:19
Alignment explanation
Indices: 32327701--32327755 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
32327691 TTCACAAGTC
32327701 AAAAAATTATAAAAAG-TCT
1 AAAAAA-TATAAAAAGATCT
* * *
32327720 AAAGAATATATAAAGAATTT
1 AAAAAATATAAAAAG-ATCT
32327740 AAAAAATATAAAAAGA
1 AAAAAATATAAAAAGA
32327756 CCCTAAACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 8 0.28
19 6 0.21
20 15 0.52
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (19 bp):
AAAAAATATAAAAAGATCT
Found at i:32327986 original size:17 final size:16
Alignment explanation
Indices: 32327964--32327995 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32327954 ACTTTACTCT
32327964 ATAATTTAAATATAATC
1 ATAATTTAAAT-TAATC
32327981 ATAATTTAAATTAAT
1 ATAATTTAAATTAAT
32327996 AAAACTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATTTAAATTAATC
Found at i:32328237 original size:27 final size:27
Alignment explanation
Indices: 32328207--32328259 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
32328197 GTTTAAAATT
32328207 AATCAAAATAAA-ACATAAAAATATGTA
1 AATCAAAATAAATA-ATAAAAATATGTA
*
32328234 AATCAAAATAAATAATAAAAGTATGT
1 AATCAAAATAAATAATAAAAATATGT
32328260 CTACTCAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (27 bp):
AATCAAAATAAATAATAAAAATATGTA
Found at i:32336854 original size:13 final size:13
Alignment explanation
Indices: 32336838--32336868 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
32336828 CCTTCTCCTT
32336838 CCCTTTCCCCTAC
1 CCCTTTCCCCTAC
32336851 CCCTTTCCCCTAC
1 CCCTTTCCCCTAC
32336864 CCCTT
1 CCCTT
32336869 CCCTTTCCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.61, G:0.00, T:0.32
Consensus pattern (13 bp):
CCCTTTCCCCTAC
Found at i:32336855 original size:18 final size:17
Alignment explanation
Indices: 32336820--32336877 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
32336810 CATTCTTCTC
*
32336820 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTAC-CCTT
32336838 CCCTTTCCCCTA--C--
1 CCCTTTCCCCTACCCTT
32336851 CCCTTTCCCCTACCCCTT
1 CCCTTTCCCCTA-CCCTT
32336869 CCCTTTCCC
1 CCCTTTCCC
32336878 GTTTCGAAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 12 0.35
15 1 0.03
16 1 0.03
18 20 0.59
ACGTcount: A:0.03, C:0.60, G:0.00, T:0.36
Consensus pattern (17 bp):
CCCTTTCCCCTACCCTT
Found at i:32336857 original size:31 final size:31
Alignment explanation
Indices: 32336819--32336877 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
32336809 CCATTCTTCT
* *
32336819 CCCCTTTCCCCTTCTCCTTCCCTTTCCCCTA
1 CCCCTTTCCCCTACCCCTTCCCTTTCCCCTA
32336850 CCCCTTTCCCCTACCCCTTCCCTTTCCC
1 CCCCTTTCCCCTACCCCTTCCCTTTCCC
32336878 GTTTCGAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.03, C:0.61, G:0.00, T:0.36
Consensus pattern (31 bp):
CCCCTTTCCCCTACCCCTTCCCTTTCCCCTA
Found at i:32339397 original size:14 final size:15
Alignment explanation
Indices: 32339375--32339451 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32339365 CAATCAAACA
32339375 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
32339389 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
32339404 ACAGAAAAGTAGAACATTTT
1 CCAGAAAA-T----CATTTT
32339424 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
32339438 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
32339452 ACTGGTAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:32343725 original size:28 final size:27
Alignment explanation
Indices: 32343665--32343727 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
32343655 TGAAAAGGTG
32343665 AAATTTAATTTTTATATTATAATTTCA
1 AAATTTAATTTTTATATTATAATTTCA
* * *
32343692 AGAATTTAATTTTTATTTTTTAGATTTTA
1 A-AATTTAATTTTTATATTATA-ATTTCA
32343721 AAATTTA
1 AAATTTA
32343728 GATATGTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.77
29 6 0.19
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (27 bp):
AAATTTAATTTTTATATTATAATTTCA
Found at i:32344365 original size:113 final size:113
Alignment explanation
Indices: 32344177--32344412 Score: 402
Period size: 113 Copynumber: 2.1 Consensus size: 113
32344167 CGTTTTCCAA
32344177 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGGCAT
1 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGGCAT
*
32344242 TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAATGGCGTTTTTGAG
66 TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTGAG
* *
32344290 AAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTC-GGGATTTAGCGGCG
1 AAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGGCA
* *
32344354 TTTTTTAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAG
65 TTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTGAG
*
32344403 GAAGCGCCGC
1 AAAGCGCCGC
32344413 TAATGCTTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
113 76 0.66
114 39 0.34
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (113 bp):
AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGGCAT
TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTGAG
Found at i:32344389 original size:41 final size:41
Alignment explanation
Indices: 32344340--32344453 Score: 183
Period size: 41 Copynumber: 2.8 Consensus size: 41
32344330 CTGAGCATTC
*
32344340 GGGATTTAGCGGCGTTTTTTAGGAAGCGCCGCTAATGCTCA
1 GGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCA
* *
32344381 GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTTA
1 GGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCA
* *
32344422 GGGATTTAGCGGCGTTTTTGAGAAAGCACCGC
1 GGGATTTAGCGGCGTTTTTGAGGAAGCGCCGC
32344454 AAAAAACCTA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.28
Consensus pattern (41 bp):
GGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCA
Found at i:32344444 original size:154 final size:154
Alignment explanation
Indices: 32344224--32344566 Score: 553
Period size: 154 Copynumber: 2.2 Consensus size: 154
32344214 TTCTGAGCAT
* * * *
32344224 TCAGGGATTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAATGGCGTTTTTGA
1 TCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTGA
*
32344289 GAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTC-GGGATTTAGCGGC
66 GAAAGCACCGC-AAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGC
*
32344353 GTTTTTTAGGAAGCGCCGCTAATGC
130 GTTTTTGAGGAAGCGCCGCTAATGC
* *
32344378 TCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTTAGGGATTTAGCGGCGTTTTTGA
1 TCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTGA
*
32344443 GAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTATCGGCG
66 GAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCG
32344508 TTTTTGAGGAAGCGCCGCTAATGC
131 TTTTTGAGGAAGCGCCGCTAATGC
* * * *
32344532 TCTGGGCTTTAGCAGCGTTTTTGAGAAAGTGCCGC
1 TCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGC
32344567 CAAAAAACCT
Statistics
Matches: 175, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
153 38 0.22
154 137 0.78
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (154 bp):
TCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGATTTAACGGCGTTTTTGA
GAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCG
TTTTTGAGGAAGCGCCGCTAATGC
Found at i:32344634 original size:114 final size:114
Alignment explanation
Indices: 32344385--32344743 Score: 506
Period size: 114 Copynumber: 3.1 Consensus size: 114
32344375 TGCTCAGGGC
*
32344385 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCT-TAGGGATTTAGCGGCGTTTTTGAGAAAGC
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCT-GGGCTTTAGCGGCGTTTTTGAGAAAGC
* * *
32344449 ACCG-CAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGA
65 GCCGCCAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
* * *
32344498 TTTATCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCAGCGTTTTTGAGAAAGTG
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
* *
32344563 CCGCCAAAAAACCTATGTCCAACGACGTCGTTTTCTGAGCATTCGGGGA
66 CCGCCAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
* * ** **
32344612 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTATTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
* * *
32344677 CCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGA
66 CCGCCAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGC-ATTCGGGGA
* *
32344727 TTTTGCAGCGTTTTTGA
1 TTTAGCGGCGTTTTTGA
32344744 CAAAGTGCCG
Statistics
Matches: 217, Mismatches: 26, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
113 61 0.28
114 134 0.62
115 22 0.10
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
CCGCCAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
Found at i:32344784 original size:74 final size:73
Alignment explanation
Indices: 32344663--32344802 Score: 217
Period size: 74 Copynumber: 1.9 Consensus size: 73
32344653 TTTAGCGGTA
* ** *
32344663 TTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGAT
1 TTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA-CCTTTCGGGGAT
32344728 TTTGCAGCG
65 TTTGCAGCG
* *
32344737 TTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGACCTTTCGGGGATT
1 TTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCTTTCGGGGATT
32344802 T
66 T
32344803 AACGGCGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 13 0.22
74 47 0.78
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (73 bp):
TTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCTTTCGGGGATT
TTGCAGCG
Found at i:32344901 original size:188 final size:188
Alignment explanation
Indices: 32344539--32344929 Score: 534
Period size: 188 Copynumber: 2.1 Consensus size: 188
32344529 TGCTCTGGGC
* * * * * *
32344539 TTTAGCAGCGTTTTTGAGAAAGTGCCGCCAAAAAACCTATGTCCAACGACGTCGTTTTCTGAGCA
1 TTTAGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCA
* * *
32344604 TTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTATTTTTG
66 TTCGGGGATTTAACGGCGTTTTTCAAGAAGCACCGCTAATGCTCAAGGCTTTAGCGGCATTTTTG
* *** *
32344669 AGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCG-GGGA
131 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGA-CCTTTCGAGGGA
* * *
32344727 TTTTGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGACCT
1 TTTAGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCA
* * *
32344792 TTCGGGGATTTAACGGCGTTTTT-AAGAAAGCACTGCTAATGCTCAGGGCTTTAGCGGCGTTTTT
66 TTCGGGGATTTAACGGCGTTTTTCAAG-AAGCACCGCTAATGCTCAAGGCTTTAGCGGCATTTTT
** *
32344856 GATTAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGAGGGC
130 GAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGAGGGA
*
32344915 TTTAGCGGCGTTTTT
1 TTTAGCAGCGTTTTT
32344930 AATATAGCAC
Statistics
Matches: 176, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
187 9 0.05
188 167 0.95
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (188 bp):
TTTAGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGACCA
TTCGGGGATTTAACGGCGTTTTTCAAGAAGCACCGCTAATGCTCAAGGCTTTAGCGGCATTTTTG
AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGAGGGA
Found at i:32344968 original size:115 final size:114
Alignment explanation
Indices: 32344734--32344990 Score: 352
Period size: 115 Copynumber: 2.2 Consensus size: 114
32344724 GGATTTTGCA
* * * *
32344734 GCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGACCTTTCGGGG
1 GCGTTTTTGACAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGGGG
* **
32344799 ATTTAACGGCGTTTTTAAGAAAGCACTGCTAATGCTCAGGGCTTTAGCG
66 ATTTAACGGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGAATTTAGCG
**
32344848 GCGTTTTTGATTAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGAGG
1 GCGTTTTTGACAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCG-GG
* * * * *
32344913 GCTTTAGCGGCGTTTTTAATATAGCACCGCTAATGCTCTGGAATTTAGCG
65 GATTTAACGGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGAATTTAGCG
* **
32344963 GCGTTTTCGGGAAAGCGCCGCAAAAAAA
1 GCGTTTTTGACAAAGCGCCGCAAAAAAA
32344991 TTATTTGTCT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
114 56 0.45
115 68 0.55
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (114 bp):
GCGTTTTTGACAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTGACCTTTCGGGG
ATTTAACGGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGAATTTAGCG
Found at i:32349333 original size:21 final size:21
Alignment explanation
Indices: 32349289--32349339 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
32349279 CTACAACTTA
* *
32349289 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAACGAGAG
* *
32349310 AAGCAGAGGCTGCAATGAGAG
1 AAGCAGAGGCGGCAACGAGAG
*
32349331 AAGTAGAGG
1 AAGCAGAGG
32349340 TTCAAAAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAACGAGAG
Found at i:32349410 original size:87 final size:87
Alignment explanation
Indices: 32349249--32349410 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 87
32349239 GACCACCGTT
* * *
32349249 GAGGTTCAAAGGAAATATGAAGAACTCTAGCTACAACTTAAAGCAGAGGCGGCAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
**
32349314 AGAGGCTGCAATGAGAGAAGTA
66 AGACACTGCAATGAGAGAAGTA
* *
32349336 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
32349401 AGACACTGCA
66 AGACACTGCA
32349411 GCGAGGGAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.14
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
AGACACTGCAATGAGAGAAGTA
Found at i:32349442 original size:87 final size:86
Alignment explanation
Indices: 32349261--32349451 Score: 224
Period size: 87 Copynumber: 2.2 Consensus size: 86
32349251 GGTTCAAAGG
* * ** *
32349261 AAATATGAAGAACTCTAGCTACAACTTAAAGCAGAGGCGGCAGCGAGGGAAGCAGAGGCTGCAAT
1 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAAC
* *
32349326 GAGAGAAGTAGAGGTTCAAAAG
66 GAGAGAAGCAGAGG-TCAAAAA
* * *
32349348 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGCAGACACTGCAGC
1 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAAC
*
32349413 GAGGGAAGCAGA-G-CAGAGAAA
66 GAGAGAAGCAGAGGTCA-A-AAA
*
32349434 AAAGTATGACGAACTCCA
1 AAA-TATGAAGAACTCCA
32349452 ACAGCAGCTT
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
84 2 0.02
85 1 0.01
86 6 0.07
87 80 0.90
ACGTcount: A:0.41, C:0.18, G:0.28, T:0.13
Consensus pattern (86 bp):
AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAAC
GAGAGAAGCAGAGGTCAAAAA
Found at i:32349859 original size:13 final size:13
Alignment explanation
Indices: 32349841--32349866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32349831 GAAGAAGCCC
32349841 CGCTAAAGAACAT
1 CGCTAAAGAACAT
32349854 CGCTAAAGAACAT
1 CGCTAAAGAACAT
32349867 GATCTTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CGCTAAAGAACAT
Found at i:32349884 original size:56 final size:57
Alignment explanation
Indices: 32349797--32349909 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 57
32349787 GTAAAAACGC
* *
32349797 CGCTAAAAGAACATGACCTTTAGTGGCGTTTGCGGAAGAAGCCCCGCTAAAGAACAT
1 CGCTAAAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACAT
* * *
32349854 CGCT-AAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACAT
1 CGCTAAAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACAT
32349910 GATCTTTAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
56 47 0.92
57 4 0.08
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (57 bp):
CGCTAAAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACAT
Found at i:32349915 original size:43 final size:43
Alignment explanation
Indices: 32349854--32349946 Score: 159
Period size: 43 Copynumber: 2.2 Consensus size: 43
32349844 TAAAGAACAT
* *
32349854 CGCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGC
1 CGCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGC
*
32349897 CGCTAAAGAACATGATCTTTAGCGGCATTTGTTGAAAAAACGC
1 CGCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGC
32349940 CGCTAAA
1 CGCTAAA
32349947 AACCTGTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (43 bp):
CGCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGC
Found at i:32350169 original size:53 final size:53
Alignment explanation
Indices: 32350106--32350215 Score: 220
Period size: 53 Copynumber: 2.1 Consensus size: 53
32350096 TTCATGAAAT
32350106 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
1 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
32350159 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
1 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
32350212 TCTT
1 TCTT
32350216 ACATTTAATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (53 bp):
TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
Found at i:32362545 original size:13 final size:13
Alignment explanation
Indices: 32362527--32362553 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32362517 TTTACAGCAA
32362527 TTATGAATTTATT
1 TTATGAATTTATT
32362540 TTATGAATTTATT
1 TTATGAATTTATT
32362553 T
1 T
32362554 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:32362727 original size:50 final size:50
Alignment explanation
Indices: 32362652--32362943 Score: 331
Period size: 50 Copynumber: 5.9 Consensus size: 50
32362642 CATTTGGGTA
* *
32362652 GAGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
32362702 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCTCCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
32362752 GAGAGG-CTCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * *
32362802 TAGAGGTCCCCCGTAAGACCATGTCTAGGG-TATGGCATGGGCACCAATAT
1 GAGAGGTCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCACCGAGAT
* * * * * *
32362852 GAGAGCTCCCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACAG
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGAT
* ** * *
32362901 GAAACATCCCATGTAAGACCATGTCTGGGACACGGCTTTGGCA
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32362944 TGTTATTATC
Statistics
Matches: 206, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
49 41 0.20
50 161 0.78
51 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:32371479 original size:40 final size:40
Alignment explanation
Indices: 32371424--32371505 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
32371414 TCATAAACGA
32371424 ATCCAAAAGTTGGAATGAATGGTCCTTAAAATGTATTCAT
1 ATCCAAAAGTTGGAATGAATGGTCCTTAAAATGTATTCAT
32371464 ATCCAAAAGTTGGAATGAATGGTCCTTAAAATGTATTCAT
1 ATCCAAAAGTTGGAATGAATGGTCCTTAAAATGTATTCAT
32371504 AT
1 AT
32371506 TTGGCGATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (40 bp):
ATCCAAAAGTTGGAATGAATGGTCCTTAAAATGTATTCAT
Found at i:32374367 original size:41 final size:41
Alignment explanation
Indices: 32374260--32374410 Score: 178
Period size: 41 Copynumber: 3.6 Consensus size: 41
32374250 CGAAGATTAA
* ** * * *
32374260 TTTTGA-TTTTTCAACATCAACATGACGAGATGGAAATTAA
1 TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
32374300 TTTTGATTTATTTTTCAACATCAACATGGCGAGGGGGAGATCAG
1 TTTTGA--T-TTTTTCAACATCAACATGGCGAGGGGGAGATCAG
* *
32374344 TTTTGATTTTTTCAACATTAACATAGCGAGGGGGAGATCAG
1 TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
* *
32374385 TTTTGTTTTTTTCAACACCAACATGG
1 TTTTGATTTTTTCAACATCAACATGG
32374411 TGAGACAGAG
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
40 6 0.06
41 54 0.57
42 1 0.01
44 34 0.36
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
Found at i:32375867 original size:22 final size:22
Alignment explanation
Indices: 32375840--32375893 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32375830 TTCTAGGCCA
* *
32375840 TTTTGGG-CACCTTTCAAACATT
1 TTTTGGGTC-CCTTCCAAAAATT
32375862 TTTTGGGTCCCTTCCAAAAATT
1 TTTTGGGTCCCTTCCAAAAATT
32375884 TTTTGGGTCC
1 TTTTGGGTCC
32375894 AAGCCATGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (22 bp):
TTTTGGGTCCCTTCCAAAAATT
Found at i:32378382 original size:17 final size:17
Alignment explanation
Indices: 32378360--32378401 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
32378350 ACAAAAACTA
32378360 AATTTAATTTCCAATTT
1 AATTTAATTTCCAATTT
32378377 AATTTAATTTCCAATTT
1 AATTTAATTTCCAATTT
32378394 -ATTTAATT
1 AATTTAATT
32378402 AATTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTAATTTCCAATTT
Found at i:32386906 original size:4 final size:4
Alignment explanation
Indices: 32386897--32386939 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
32386887 ATATTTGCTT
* *
32386897 ATAA ATAA ATAA ATAA ATAA ATAAA ATTA ATAA ATTA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA AT
32386940 GCTCAAGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:32386928 original size:21 final size:21
Alignment explanation
Indices: 32386899--32386939 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32386889 ATTTGCTTAT
32386899 AAATAAATAAATAAATAAATA
1 AAATAAATAAATAAATAAATA
* *
32386920 AAATTAATAAATTAATAAAT
1 AAATAAATAAATAAATAAAT
32386940 GCTCAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAAATAAATAAATAAATA
Found at i:32389589 original size:39 final size:39
Alignment explanation
Indices: 32389545--32389735 Score: 217
Period size: 39 Copynumber: 4.8 Consensus size: 39
32389535 ATATATTTAT
* *
32389545 TTTTTTTAATTTTAAAATATTTTTTACATACTTTTTAAA
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
*
32389584 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
1 TTTTTTTAATTTTAAAATATTTTTAAAATAC-TTTTTAAA
* *
32389624 -TTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATA--CTTTTTAAA
* *
32389664 TTTTTTTAATTTTAAGATATTTTAAAAATA-TTTTTAAAATA
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTT--AA-A
*
32389705 CTTTTTTTAATTTTTTAAA-ATTTTTAAAATA
1 -TTTTTTTAA-TTTTAAAATATTTTTAAAATA
32389736 AAAATGGGCC
Statistics
Matches: 131, Mismatches: 12, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
38 5 0.04
39 58 0.44
40 15 0.11
41 27 0.21
42 20 0.15
43 6 0.05
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (39 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
Found at i:32389668 original size:9 final size:10
Alignment explanation
Indices: 32389652--32389676 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32389642 TTTTTAAAAT
32389652 ATTTTTTTTA
1 ATTTTTTTTA
32389662 ATTTTTTTTA
1 ATTTTTTTTA
32389672 ATTTT
1 ATTTT
32389677 AAGATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
ATTTTTTTTA
Found at i:32389709 original size:12 final size:11
Alignment explanation
Indices: 32389593--32389735 Score: 78
Period size: 11 Copynumber: 13.9 Consensus size: 11
32389583 ATTTTTTTAA
32389593 TTTTAAAATAT
1 TTTTAAAATAT
32389604 TTTTAAAATACT
1 TTTTAAAATA-T
**
32389616 TTTTTTAAT-T
1 TTTTAAAATAT
32389626 TTTT---A-A-
1 TTTTAAAATAT
32389632 TTTTAAAATAT
1 TTTTAAAATAT
32389643 TTTTAAAATATT
1 TTTTAAAATA-T
**
32389655 TTTTTTAAT-T
1 TTTTAAAATAT
* *
32389665 TTTT---TTAA
1 TTTTAAAATAT
*
32389673 TTTTAAGATAT
1 TTTTAAAATAT
*
32389684 TTTAAAAATAT
1 TTTTAAAATAT
32389695 TTTTAAAATACT
1 TTTTAAAATA-T
**
32389707 TTTTTTAAT-T
1 TTTTAAAATAT
32389717 TTTT-AAA-AT
1 TTTTAAAATAT
32389726 TTTTAAAATA
1 TTTTAAAATA
32389736 AAAATGGGCC
Statistics
Matches: 102, Mismatches: 14, Indels: 32
0.69 0.09 0.22
Matches are distributed among these distances:
6 4 0.04
7 2 0.02
8 4 0.04
9 8 0.08
10 19 0.19
11 41 0.40
12 24 0.24
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:32389727 original size:52 final size:51
Alignment explanation
Indices: 32389631--32389728 Score: 160
Period size: 52 Copynumber: 1.9 Consensus size: 51
32389621 TAATTTTTTA
* **
32389631 ATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTAATTTTAAGAT
1 ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTAAGAT
32389682 ATTTTAAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTT
1 ATTTT-AAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTT
32389729 TAAAATAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
51 5 0.12
52 38 0.88
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (51 bp):
ATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTAAAATTTTAAGAT
Found at i:32397444 original size:20 final size:21
Alignment explanation
Indices: 32397414--32397468 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
32397404 GAGTATATAT
*
32397414 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
32397434 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
32397455 TTGCATATTATATT
1 ATACATATTATATT
32397469 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:32397447 original size:22 final size:22
Alignment explanation
Indices: 32397419--32397482 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
32397409 TATATATACA
32397419 TATATATTTTACATAATACTAT
1 TATATATTTTACATAATACTAT
* * *
32397441 TATATA-TGTACATATTGCATAT
1 TATATATTTTACATAATAC-TAT
*
32397463 TATATTATTTT-CATTATACT
1 TATA-TATTTTACATAATACT
32397483 TACATACATG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
21 9 0.28
22 14 0.44
23 7 0.22
24 2 0.06
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (22 bp):
TATATATTTTACATAATACTAT
Found at i:32401662 original size:20 final size:21
Alignment explanation
Indices: 32401632--32401686 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
32401622 GAGTATATAT
*
32401632 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
32401652 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
32401673 TTTCATATTATATT
1 ATACATATTATATT
32401687 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:32403181 original size:18 final size:18
Alignment explanation
Indices: 32403158--32403194 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
32403148 GCCCAGGGAC
32403158 TAAACTGAAAAAGTTTAA
1 TAAACTGAAAAAGTTTAA
32403176 TAAACTGAAAAAGTTTAA
1 TAAACTGAAAAAGTTTAA
32403194 T
1 T
32403195 CATTATAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (18 bp):
TAAACTGAAAAAGTTTAA
Found at i:32403524 original size:5 final size:5
Alignment explanation
Indices: 32403514--32403540 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32403504 AAAAGAAAGA
32403514 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
32403541 GCAGATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:32404528 original size:24 final size:24
Alignment explanation
Indices: 32404483--32404528 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
32404473 GTTCAATTTA
**
32404483 GTAATTTTATTATTATTTTTTAAT
1 GTAATTTTATTATTATCATTTAAT
32404507 GTAATTATTATT-TTATCATTTA
1 GTAATT-TTATTATTATCATTTA
32404529 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
GTAATTTTATTATTATCATTTAAT
Found at i:32404534 original size:19 final size:18
Alignment explanation
Indices: 32404488--32404530 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
32404478 ATTTAGTAAT
*
32404488 TTTATTATTATTTTTTAA
1 TTTATTATTATTTTATAA
* *
32404506 TGTAATTATTATTTTATCA
1 T-TTATTATTATTTTATAA
32404525 TTTATT
1 TTTATT
32404531 TATTTTTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTATTATTTTATAA
Found at i:32416888 original size:44 final size:43
Alignment explanation
Indices: 32416792--32417678 Score: 440
Period size: 44 Copynumber: 20.6 Consensus size: 43
32416782 AATGATCCTG
* * * * *
32416792 TCTCCCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTA
*
32416832 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTA
* * * * *
32416876 TCTTCCTGAAGTTGCAGT-GAGGTAGACTGAATATGGCAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCTTA
* * * *
32416921 TCTCCCTGAAGTTGCAGTGGAGTAGA-TTAG-AGCCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTA
* * **
32416965 TCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AACCTTGGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTA
* * ** * * * * *
32417009 TCTCTCTGAAGTTACAG-AAAGCATA-T-CGCATCTAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTA
* *
32417049 TCTCCCTGAAGTTGCAGTGGAGCGGACTAAGCAAGCAAGTCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTA
* * *
32417093 TCTTCCTGAAG-TG-A----AGCAGACTGAAGATGACAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAGTCTTA
* * * *
32417132 TCTCCCTGAAGTTACAGTGGAGCAGA-TTA-AAGCCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTA
* * * *
32417176 TCTCCATGAAGTTGCAGTGGAGCAGATTAA-AACCTTAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTA
* * * * * *
32417220 TCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTA
* *
32417260 TCTCCCTCAAGTTGCAGTGGAGAAGACTAAGTAAGCAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTA
* * * * **
32417304 TC-CTCCTGAAGTTGTAGTGGGGCAGACTGAATATGGCAAACCTTA
1 TCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTA
* * * * *
32417349 TCTCCTTGAAGTTGCAGTGGAGCAG-GTTA-AAGCCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTA
* * * * * **
32417393 TCTCCCTAAAGTTGTAGTGGAGCGGATTAA-AATCTTGGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTA
* * * * * * *
32417437 TCTCTCTAAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTA
32417477 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTA
* **
32417521 TC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCAAACCTTA
1 TCTC-CCTGAAGTTGCAGT-GGAGCAGACT-AAGA-AGCAAGTCTTA
* * * *
32417566 TCTCCCTGAAGTTACAGTGGAGCAG-GTTA-AAGCCGATAGTCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTA
* *
32417610 TCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AATCACAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCTTA
* *
32417654 TCTCTCTGAAGTTGCAG-AGAGCAGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGA
32417679 TCGCATCTAG
Statistics
Matches: 648, Mismatches: 138, Indels: 119
0.72 0.15 0.13
Matches are distributed among these distances:
38 9 0.01
39 20 0.03
40 78 0.12
41 35 0.05
42 23 0.04
43 47 0.07
44 317 0.49
45 115 0.18
46 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTA
Found at i:32417624 original size:89 final size:88
Alignment explanation
Indices: 32417473--32417635 Score: 208
Period size: 89 Copynumber: 1.8 Consensus size: 88
32417463 CGCATCTAGT
* *
32417473 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAG-AAGCAAGTCCTATCCTCCTGAAGTTGCAG
32417538 TAGG-GCAGACTGAAGATGGCAAAC
65 T-GGAGCAGACTGAAGATGGCAAAC
* *
32417562 CTTATCTCCCTGAAGTTACAGTGGAGCAG-GTTA-AAGCCGATAGTCCTAT-CTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAAG-C-A-AGTCCTATCCT-CCTGAAGTTG
32417624 CAGTGGAGCAGA
62 CAGTGGAGCAGA
32417636 TTAAAATCAC
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
86 3 0.05
87 1 0.02
88 7 0.11
89 54 0.83
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (88 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAAGCAAGTCCTATCCTCCTGAAGTTGCAGT
GGAGCAGACTGAAGATGGCAAAC
Found at i:32417711 original size:217 final size:217
Alignment explanation
Indices: 32416792--32417700 Score: 1409
Period size: 217 Copynumber: 4.2 Consensus size: 217
32416782 AATGATCCTG
*
32416792 TCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
32416857 ACTAAGTAAGCAAGTCCTATCTTCCTGAAGTTGCAGT-GAGGTAGACTGAATATGGCAAATCTTA
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAG-GGCAGACTGAAGATGGCAAACCTTA
* * *
32416921 TCTCCCTGAAGTTGCAGTGGAGTAGATTAGAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGA
130 TCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGA
*
32416986 GCAGATTAAAACCTTGGATCTTA
195 GCAGATTAAAACCTTAGATCTTA
* * * *
32417009 TCTCTCTGAAGTTACAGAAAGCATATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
32417074 ACTAAGCAAGCAAGTCCTATCTTCCTGAAG-TG-A--A--GCAGACTGAAGATGACAAATCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
*
32417133 CTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCATGAAGTTGCAGTGGAG
131 CTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
32417198 CAGATTAAAACCTTAGATCTTA
196 CAGATTAAAACCTTAGATCTTA
* *
32417220 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTCAAGTTGCAGTGGAGAAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
32417285 ACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGTAGTGGGGCAGACTGAATATGGCAAACCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
* * * * *
32417350 CTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAG
131 CTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
* * *
32417415 CGGATTAAAATCTTGGATCTTA
196 CAGATTAAAACCTTAGATCTTA
*
32417437 TCTCTCTAAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
*
32417502 ACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
* *
32417567 CTCCCTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAGTCCTATCTCCCTGAAGTTGCAGTGGAG
131 CTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
* **
32417632 CAGATTAAAATCACAGATCTTA
196 CAGATTAAAACCTTAGATCTTA
32417654 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCT
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCT
32417701 AACATTGCAG
Statistics
Matches: 633, Mismatches: 52, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
211 190 0.30
212 2 0.00
213 1 0.00
215 1 0.00
216 2 0.00
217 437 0.69
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
CTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
CAGATTAAAACCTTAGATCTTA
Found at i:32418078 original size:5 final size:5
Alignment explanation
Indices: 32418070--32418106 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
32418060 AAAGGAAAGA
32418070 AAATC AAATC AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AAATC AAATC AA
32418107 GCAGATTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:32422596 original size:27 final size:26
Alignment explanation
Indices: 32422565--32422701 Score: 139
Period size: 27 Copynumber: 5.1 Consensus size: 26
32422555 ACACGTGAAA
32422565 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
*
32422592 AAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCCTTTGTGGCGAA-TATG
* * *
32422619 AAAGGAACACCTTTATGGTGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* * * *
32422646 AAAGTAATGTCTTTGTGGCGAAATACG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* *
32422673 AAAGGAATGCTTTTGTGGCGAATCATG
1 AAAGGAACGCCTTTGTGGCGAAT-ATG
32422700 AA
1 AA
32422702 GGGATAGCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.06
27 83 0.92
28 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (26 bp):
AAAGGAACGCCTTTGTGGCGAATATG
Found at i:32422701 original size:54 final size:54
Alignment explanation
Indices: 32422565--32422711 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
32422555 ACACGTGAAA
* *
32422565 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * * * *
32422619 AAAGGAACACCTTTATGGTGCAATATGAAAGTAATGTCTTTGTGGCGAAATACG
1 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * *
32422673 AAAGGAATGCTTTTGTGGCG-AATCATGAAGGGATAGCCT
1 AAAGGAACGCCTTTGTGGCGCAAT-ATGAAAGGAAAGCCT
32422712 CTATGGTGAA
Statistics
Matches: 74, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 3 0.04
54 71 0.96
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (54 bp):
AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
Found at i:32439369 original size:40 final size:40
Alignment explanation
Indices: 32439332--32439462 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
32439322 GCTACTCGTT
*
32439332 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
32439372 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
32439412 CAAATGCCTTTGGG--TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
32439450 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32439463 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 33 0.41
40 46 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:32441268 original size:20 final size:20
Alignment explanation
Indices: 32441243--32441281 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32441233 CTGTCACAAC
32441243 TGATCAATGATGCTTTGATT
1 TGATCAATGATGCTTTGATT
*
32441263 TGATCAATGATGTTTTGAT
1 TGATCAATGATGCTTTGAT
32441282 ACAAACGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATCAATGATGCTTTGATT
Found at i:32452389 original size:42 final size:42
Alignment explanation
Indices: 32452322--32452408 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
32452312 CGTGTGTGTC
*
32452322 TCCGGCCTCTATCTCTTGACCAAAGCACTGATGAGTGAGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
* * *
32452364 TCCGGTCTCTATCTCTTAACTAAAGCACTGATGAGTGGGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
32452406 TCC
1 TCC
32452409 AATTTAGTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (42 bp):
TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
Found at i:32459060 original size:65 final size:65
Alignment explanation
Indices: 32458985--32459119 Score: 252
Period size: 65 Copynumber: 2.1 Consensus size: 65
32458975 TGTCAAAATT
32458985 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
1 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
*
32459050 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTATTATTACAAAGAA
1 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
*
32459115 AAATT
1 TAATT
32459120 CTATGGTTCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (65 bp):
TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
Found at i:32460238 original size:109 final size:110
Alignment explanation
Indices: 32460090--32460352 Score: 379
Period size: 109 Copynumber: 2.4 Consensus size: 110
32460080 ATCGAAACCA
* * *
32460090 AGCACCTTAGGGCACG--TTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
* * * * *
32460153 AAAAGGATATTAAGTCATTTGGTTGAACGAGAAAAATCGACACTC
66 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
* * * *
32460198 AGCGCCTTAGGGCGTG-TTTTCTCAAATTTTCAAACGCAAAACATTGCCTTATTTTAAAATTTTT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
32460262 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
66 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
* *
32460307 AGCACCTTAGGGTATGTTTTTCTCAAATTTCCAAACGCTAAATATT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATT
32460353 ACCTCGATTA
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
108 13 0.10
109 96 0.71
110 26 0.19
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.32
Consensus pattern (110 bp):
AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
Found at i:32460687 original size:16 final size:17
Alignment explanation
Indices: 32460668--32460709 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
32460658 TATATAGATA
32460668 TACATATATAAA-TATG
1 TACATATATAAAGTATG
* *
32460684 TACATATAAAAAGTATT
1 TACATATATAAAGTATG
32460701 TA-ATATATA
1 TACATATATA
32460710 TATTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TACATATATAAAGTATG
Done.