Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 114 of 199
Found at i:32460903 original size:12 final size:12
Alignment explanation
Indices: 32460870--32460906 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
32460860 GATGATGATG
*
32460870 ATAATAATAATA
1 ATAATAATATTA
32460882 ATAATAATATTA
1 ATAATAATATTA
*
32460894 ATATTAATATTA
1 ATAATAATATTA
32460906 A
1 A
32460907 AAGATGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATAATATTA
Found at i:32460910 original size:49 final size:48
Alignment explanation
Indices: 32460822--32460930 Score: 123
Period size: 49 Copynumber: 2.3 Consensus size: 48
32460812 AATATAATGG
* * * * *
32460822 TAATAATAACAACATTAATATTAATAATTAATGGTAAAGATGATGATGA
1 TAATAATAATAATAATAATATTAATAATTAATAGTAAAGATGATAAT-A
*
32460871 TAATAATAATAATAATAATATTAAT-ATTAATATTAAAAGATGATAATA
1 TAATAATAATAATAATAATATTAATAATTAATAGT-AAAGATGATAATA
*
32460919 TATTAA-AATAAT
1 TAATAATAATAAT
32460931 GAAGAAAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 6 0.12
48 13 0.25
49 33 0.63
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (48 bp):
TAATAATAATAATAATAATATTAATAATTAATAGTAAAGATGATAATA
Found at i:32461347 original size:14 final size:15
Alignment explanation
Indices: 32461319--32461347 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32461309 CCGGCCAATA
32461319 GCCACCGTCGCGCCG
1 GCCACCGTCGCGCCG
32461334 GCCACCGT-GCGCCG
1 GCCACCGTCGCGCCG
32461348 TGGCCGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.07, C:0.52, G:0.34, T:0.07
Consensus pattern (15 bp):
GCCACCGTCGCGCCG
Found at i:32462528 original size:44 final size:44
Alignment explanation
Indices: 32462480--32462676 Score: 131
Period size: 44 Copynumber: 4.5 Consensus size: 44
32462470 TAATCCGCTT
*
32462480 CACTGCAACTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
* * * *
32462524 CACTGCAACTTCTGGGAGATAAGACTGAA-----TGCGATCTGCTC
1 CACTGCAACTTCAGGAAGATAAGA-TTAATTTTTTTCG-TCTGCTC
* * ** ** *
32462565 TACTGCAACTTCA-GAGAGATAAGATCT-GTGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGA-AGATAAGAT-TAATTTTTTTCGTCTGCTC
* * * * * *
32462609 CACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCGTCTACTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
32462653 CACTGCAACTTCAAGG-AGATAAGA
1 CACTGCAACTTC-AGGAAGATAAGA
32462677 CTGGATGTGA
Statistics
Matches: 113, Mismatches: 28, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
40 5 0.04
41 26 0.23
43 1 0.01
44 73 0.65
45 8 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
Found at i:32462609 original size:85 final size:85
Alignment explanation
Indices: 32462520--32462972 Score: 425
Period size: 85 Copynumber: 5.3 Consensus size: 85
32462510 TTTTTCGTCT
* *
32462520 GCTCCACTGCAACTTCTGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
32462585 AAGATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
* * * * * * *
32462605 GCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCG-TCTACTCCACTGCAACTTCA-AG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGA---ATGT-GATCTGCTCTACTGCAACTTCAGA-
* * * *
32462668 GAGATAAGA-C--TGGATGTGATCT
61 GAGATAAGATCTGTGGTTTTAATCC
* * ** ** * * * * **
32462690 GCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA-C--TGAATGTGATCTGCTCTACTGCAACTTCAGAGA
* * ** *
32462755 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCTG-TGGT-TTTAATCC
*
32462778 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
32462843 AAGATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
* * * * *
32462863 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACCGTAACTTCAGAGATAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
*
32462928 AAAATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
*
32462948 GCTCCACTGCAACTTCAGGAAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
32462973 GGATTATCGG
Statistics
Matches: 295, Mismatches: 56, Indels: 34
0.77 0.15 0.09
Matches are distributed among these distances:
85 227 0.77
86 4 0.01
87 3 0.01
88 60 0.20
89 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCC
Found at i:32462654 original size:129 final size:129
Alignment explanation
Indices: 32462423--32462887 Score: 696
Period size: 129 Copynumber: 3.6 Consensus size: 129
32462413 AAAAAGTCTG
* * * * * ** ** *
32462423 ATGCGATATGCTATATTGGAACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* * * *
32462488 CTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTCCACTGCAACTTCTGGGAGATAAGACTGA
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
32462552 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* * * *
32462617 CTTTAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAAGGAGATAAGACTGG
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
* * * **
32462681 ATGTGATCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* *
32462746 CTTCAGAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGT
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
*
32462810 ATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
32462875 CTTCAGGGAGATA
66 CTTCAGGGAGATA
32462888 AGACTGTATG
Statistics
Matches: 303, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 303 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
Found at i:32462957 original size:129 final size:129
Alignment explanation
Indices: 32462442--32463021 Score: 561
Period size: 129 Copynumber: 4.5 Consensus size: 129
32462432 GCTATATTGG
* ** ** * * * *
32462442 AACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTA
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGATT-
* * * * * * *
32462507 ATTTTTTTCGTCTGCTCCACTGCAACTTCTGGGAGATAAGAC--TGAATGCGATCTGCTCTACTG
65 -GTTCTTTCGTCTACTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTG
32462570 C
129 C
* * *
32462571 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGATTG
32462636 ATTTCTTTCGTCTACTCCACTGCAACTTCA-AGGAGATAAGAC--TGGATGTGATCTGCTCTACT
66 --TTCTTTCGTCTACTCCACTGCAACTTCAGA-GAGATAAGACTGTGGATGTGATCTGCTCTACT
*
32462698 GT
128 GC
* * * *
32462700 AACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGAGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGATTG
* *
32462765 ATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGT--ATGTGATCTGCTCTACTG
66 --TTCTTTCGTCTACTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTG
32462828 C
129 C
* *
32462829 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGATTG
* * * * * * * * * * * *
32462894 -TATGT-GATCTACTCTACCGTAACTTCAGAGATATAAAATCTGTGGTTTTAATCCGCTCCACTG
66 TTCTTTCG-TCTACTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGATGTGATCTGCTCTACTG
32462957 C
129 C
* * * * * * *
32462958 AACTTCAG-GAAGATAGGAT-TATCGGCTTCAATCTGCTCCACTATAACCTCAGGGAGATAAGAT
1 AACTTCAGAG-AGATAAGATCTGT-GGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGAT
32463021 T
64 T
32463022 TGTCATCTTC
Statistics
Matches: 386, Mismatches: 53, Indels: 24
0.83 0.11 0.05
Matches are distributed among these distances:
125 1 0.00
126 27 0.07
127 4 0.01
128 3 0.01
129 350 0.91
131 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAAGATTG
TTCTTTCGTCTACTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTGC
Found at i:32463303 original size:87 final size:87
Alignment explanation
Indices: 32462775--32464329 Score: 559
Period size: 87 Copynumber: 17.9 Consensus size: 87
32462765 ATTTCTTTCG
* * * * * *
32462775 TCTGCTCCACTGCAACTTCAGGGAGATAAG--ACTGTATGT-GATCTGCTCTACTGCAACTTCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCT-TCGATCTGCTCCACTGTAACCTCAG
* * * *
32462837 AGAGATAAGATCTGTGGTTTTAA
65 GGAGATAAGATCTCTGGCTTCAA
* * * * * * * *
32462860 TCCGCTCCACTGCAACTTCAGGGAGATAAG--ACTGTATGT-GATCTACTCTACCGTAACTTCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCT-TCGATCTGCTCCACTGTAACCTCAG
* * * * * *
32462922 AGATATAAAATCTGTGGTTTTAA
65 GGAGATAAGATCTCTGGCTTCAA
* * * * * * * *
32462945 TCCGCTCCACTGCAACTTCAGGAAGATAGGATTA-TCGGCTTCAATCTGCTCCACTATAACCTCA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGA-TACT-GTCTTCGATCTGCTCCACTGTAACCTCA
* * ** *
32463009 GGGAGATAAGATTTGTCATCTTCGA
64 GGGAGATAAGATCTCT-GGCTTCAA
* * * * * * * * *
32463034 TCTGCCCCACTGCAACTTTAGGGGGTTAAG--ACTTGAT-TACTC-AGTCTGCTCCGCTGCAACT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATAC-TG-TCT--TCGA-TCTGCTCCACTGTAACC
* * * * **
32463095 TCAGAGAGAAAAGATCTGAAAT-TCTTCGG
61 TCAGGGAGATAAGATCT---CTGGCTTCAA
* * * * * ** * **
32463124 TCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-GTGCGATCTACTCTGCTGTAACTTCAAA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
*** *
32463187 GAGATAAGATC-CTTTATTTTAA
66 GAGATAAGATCTC-TGGCTTCAA
* * * * * * * *
32463209 TCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
32463274 GAGATAAGATCTCTGGCTTCAA
66 GAGATAAGATCTCTGGCTTCAA
* *
32463296 TCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTG----TCTTCGATCTGCTCCACTGTAACCT
* * *
32463360 CAGGGAGATAAGA-C-CT-GATGCGA
62 CAGGGAGATAAGATCTCTGGCTTCAA
* ** * * * * ** * *
32463383 TCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAACTTCA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATAC--TGTCTTCGATCTGCTCCACTGTAACCTCA
* ** * *
32463448 GGGAGATAGGAT-AGTGTCTTCGA
64 GGGAGATAAGATCTCTGGCTTCAA
* * * * *
32463471 TCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGAT-ACTGTCTTCGATCTGCTCCACTGTAACCTCAG
* * * **
32463536 GGAGATAACATCTGAAAT-TCTTCGG
65 GGAGATAAGATCT---CTGGCTTCAA
* * * * * ** *
32463561 TCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACCTCAGA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
*** *
32463624 GAGATAAGATC-CTTTATTTTAA
66 GAGATAAGATCTC-TGGCTTCAA
* * * * * * * * *
32463646 TCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAGT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
32463711 GAGATAAGATCTCTGGCTTCAA
66 GAGATAAGATCTCTGGCTTCAA
* * * * *
32463733 TATGCTCCACTGTAACCTCAAGGAGATAATAT-CTGAAATCCTTCGGTCTACTCCACTGTAACCT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTG---T-CTTCGATCTGCTCCACTGTAACCT
* * *
32463797 CAGGGAGATAAGA-C-CT-GATGCGA
62 CAGGGAGATAAGATCTCTGGCTTCAA
* ** * * * * ** * *
32463820 TCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCACTGTGACTTCA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGT-CTTCGATCT-GCTCCACTGTAACCTCA
* ** * *
32463884 GGGAGATAGGAT-AGTGCCTTCGA
64 GGGAGATAAGATCTCTGGCTTCAA
* * * * * * *
32463907 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGTTCCACTGTAACCTCAA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGAT-ACTGTCTTCGATCTGCTCCACTGTAACCTCAG
* * **
32463972 GGAGATAAGATCTGAAAT-TCTTCGG
65 GGAGATAAGATCT---CTGGCTTCAA
* * * * * * * ** * * *
32463997 TCTACTCCACTGTAACCTTAGGGAGATACGA-CCTG-ATGCGATCTACTCTGCTGTAACTTTAGA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
*** *
32464060 GAGATAAGATC-CTTTATTTTAA
66 GAGATAAGATCTC-TGGCTTCAA
* * * * * * * *
32464082 TCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGA-TACTGTCTTCGATCTGCTCCACTGTAACCTCAG
* ** **
32464147 GGAGATAAGATCTGAAAT-TTTTCGG
65 GGAGATAAGATCT---CTGGCTTCAA
* * * * * * *
32464172 TCTGCCCCACTGTAATCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTACTGTAA-CTCCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCT-CAG
**
32464234 AAAGATAAGATCT-T---TT-AA
65 GGAGATAAGATCTCTGGCTTCAA
* * * * * * * *
32464252 TCCGCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGA-TACTGTCTTCGATCTGCTCCACTGTAACCTCAG
*
32464317 GGAGATAAAATCT
65 GGAGATAAGATCT
32464330 GTAATTCTTC
Statistics
Matches: 1103, Mismatches: 295, Indels: 146
0.71 0.19 0.09
Matches are distributed among these distances:
80 27 0.02
81 2 0.00
82 2 0.00
83 29 0.03
84 6 0.01
85 218 0.20
86 42 0.04
87 405 0.37
88 116 0.11
89 60 0.05
90 191 0.17
91 4 0.00
92 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (87 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGG
GAGATAAGATCTCTGGCTTCAA
Found at i:32463344 original size:218 final size:218
Alignment explanation
Indices: 32463078--32464159 Score: 1858
Period size: 218 Copynumber: 5.0 Consensus size: 218
32463068 GATTACTCAG
* * * * *
32463078 TCTGCTCCGCTGCAACTTCAGAGAGAAAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * *
32463143 AGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* *
32463208 ATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
32463273 GGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
32463296 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
32463361 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTT
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTA-TTTT
*
32463426 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCTCTGTAATCTCA
130 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
32463491 GGGAGATAAGATCTCTGGCTTCAA
195 GGGAGATAAGATCTCTGGCTTCAA
*
32463515 TCTGCTCCACTGTAACCTCAGGGAGATAACATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
32463580 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* *
32463645 ATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
*
32463710 TGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
* * * *
32463733 TATGCTCCACTGTAACCTCAAGGAGATAATATCTGAAATCCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
32463798 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* * *
32463863 ATTCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGCCTTCGATCTGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
32463928 GGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
* * *
32463951 TCTGTTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * *
32464016 AGGGAGATACGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* * * *
32464081 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCA
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
32464146 GGGAGATAAGATCT
195 GGGAGATAAGATCT
32464160 GAAATTTTTC
Statistics
Matches: 821, Mismatches: 41, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
218 566 0.69
219 255 0.31
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTCTGGCTTCAA
Found at i:32463640 original size:437 final size:436
Alignment explanation
Indices: 32463078--32464159 Score: 1867
Period size: 437 Copynumber: 2.5 Consensus size: 436
32463068 GATTACTCAG
* * * * *
32463078 TCTGCTCCGCTGCAACTTCAGAGAGAAAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
32463143 AGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* *
32463208 ATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
* * *
32463273 GGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
196 GGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGATAAGATCTGAAATCCT
32463338 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
261 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
*
32463403 GAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
326 GAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGCCTT
*
32463468 CGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
390 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
*
32463515 TCTGCTCCACTGTAACCTCAGGGAGATAACATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
32463580 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* *
32463645 ATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
* *
32463710 TGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGATAATATCTGAAATCCT
196 GGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGATAAGATCTGAAATCCT
32463775 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
261 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
* *
32463840 GAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGCCTTC
326 GAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGCCTTC
32463905 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
391 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
* * *
32463951 TCTGTTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
32464016 AGGGAGATACGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* * * *
32464081 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCA
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
32464146 GGGAGATAAGATCT
195 GGGAGATAAGATCT
32464160 GAAATTTTTC
Statistics
Matches: 608, Mismatches: 36, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
436 243 0.40
437 365 0.60
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (436 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGATAAGATCTGAAATCCT
TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
GAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGCCTTC
GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
Found at i:32464279 original size:39 final size:42
Alignment explanation
Indices: 32464080--32464329 Score: 118
Period size: 44 Copynumber: 5.9 Consensus size: 42
32464070 CCTTTATTTT
* *
32464080 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTC
1 AATCCGCTCCACTGTAATC-TAAGGGAGATAAGA-T-CTATCTTC
** * * *
32464124 AATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTTTTC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT---A-TCTTC
** * * * * *
32464170 GGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGA--TGC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT-ATCTTC
* ** * * **
32464211 GATCTACTCTACTGTAA-CTCCAGAAAGATAAGATCT-T-TT-
1 AATCCGCTCCACTGTAATCT-AAGGGAGATAAGATCTATCTTC
*
32464250 AATCCGCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGA-T-CTATCTTC
* * * *
32464294 AATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT
32464330 GTAATTCTTC
Statistics
Matches: 159, Mismatches: 34, Indels: 28
0.72 0.15 0.13
Matches are distributed among these distances:
39 22 0.14
40 6 0.04
41 30 0.19
42 5 0.03
43 4 0.03
44 56 0.35
45 2 0.01
46 34 0.21
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (42 bp):
AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCTATCTTC
Found at i:32464343 original size:170 final size:172
Alignment explanation
Indices: 32463910--32464376 Score: 636
Period size: 175 Copynumber: 2.7 Consensus size: 172
32463900 CCTTCGATCT
* * ** * * * *
32463910 GCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGTTCCACTGTAACCTCAAGG
1 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * * *
32463974 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATACGACCTGATGCGAT
65 AGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
* ** *
32464039 CTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCC
130 CTACTCTACTGTAACTCCAGAAAGATAAGATCC--T-TTTTAATCC
*
32464085 GCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* *
32464149 AGATAAGATCTGAAATTTTTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
65 AGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
32464214 CTACTCTACTGTAACTCCAGAAAGATAAGAT-C-TTTTAATCC
130 CTACTCTACTGTAACTCCAGAAAGATAAGATCCTTTTTAATCC
*
32464255 GCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * * * *
32464320 GATAAAATCTGTAATTCTTCGGTCTGTTCCACCGTAATCTCAGGGAAATAAGACCTG
66 GATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
32464377 TATAATGAAC
Statistics
Matches: 261, Mismatches: 28, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
170 120 0.46
171 1 0.00
174 3 0.01
175 137 0.52
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (172 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
GATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTCCAGAAAGATAAGATCCTTTTTAATCC
Found at i:32465592 original size:6 final size:6
Alignment explanation
Indices: 32465583--32465633 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
32465573 GCCTTTCCAT
*
32465583 TTTTCA TTTTTCA TTTTCA TTTTTCA TTCTCA TTTTTCA TTTT-- TTTTCA
1 TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA TTTTCA
32465632 TT
1 TT
32465634 CTTTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
4 4 0.11
6 17 0.45
7 17 0.45
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:32465592 original size:7 final size:7
Alignment explanation
Indices: 32465580--32465626 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
32465570 TTAGCCTTTC
32465580 CATTTTT
1 CATTTTT
32465587 CATTTTT
1 CATTTTT
32465594 CA-TTTT
1 CATTTTT
32465600 CATTTTT
1 CATTTTT
*
32465607 CA-TTCT
1 CATTTTT
32465613 CATTTTT
1 CATTTTT
32465620 CATTTTT
1 CATTTTT
32465627 TTTCATTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:32465599 original size:13 final size:13
Alignment explanation
Indices: 32465583--32465625 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
32465573 GCCTTTCCAT
32465583 TTTTCATTTTTCA
1 TTTTCATTTTTCA
32465596 TTTTCATTTTTCA
1 TTTTCATTTTTCA
*
32465609 TTCTCATTTTTCA
1 TTTTCATTTTTCA
32465622 TTTT
1 TTTT
32465626 TTTTCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:32465603 original size:20 final size:20
Alignment explanation
Indices: 32465580--32465626 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32465570 TTAGCCTTTC
*
32465580 CATTTTTCATTTTTCA-TTTT
1 CATTTTTCA-TTCTCATTTTT
32465600 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
32465620 CATTTTT
1 CATTTTT
32465627 TTTCATTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:32465630 original size:10 final size:11
Alignment explanation
Indices: 32465602--32465640 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
32465592 TTCATTTTCA
32465602 TTTTTCATTCT
1 TTTTTCATTCT
32465613 CATTTTTCATT-T
1 --TTTTTCATTCT
32465625 TTTTTCATTCT
1 TTTTTCATTCT
32465636 TTTTT
1 TTTTT
32465641 TTTTACTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 1 0.04
13 9 0.36
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTCATTCT
Found at i:32465642 original size:13 final size:12
Alignment explanation
Indices: 32465583--32465633 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
32465573 GCCTTTCCAT
32465583 TTTTCATTTTTCA
1 TTTT-ATTTTTCA
32465596 TTTTCATTTTTCA
1 TTTT-ATTTTTCA
*
32465609 TTCTCATTTTTCA
1 TT-TTATTTTTCA
32465622 -TTT-TTTTTCA
1 TTTTATTTTTCA
32465632 TT
1 TT
32465634 CTTTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 7 0.21
11 2 0.06
12 1 0.03
13 23 0.68
14 1 0.03
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTATTTTTCA
Found at i:32466513 original size:9 final size:9
Alignment explanation
Indices: 32466437--32466535 Score: 67
Period size: 9 Copynumber: 10.8 Consensus size: 9
32466427 TGACCTCTCC
*
32466437 TTTTTTCTT
1 TTTTTTATT
*
32466446 TTTTTTCTT
1 TTTTTTATT
*
32466455 TTTTTGA-T
1 TTTTTTATT
32466463 TTTTTTATT
1 TTTTTTATT
*
32466472 CTTCTTT-TT
1 -TTTTTTATT
**
32466481 TTTCCTATT
1 TTTTTTATT
*
32466490 TTGACTTTGATT
1 TT---TTTTATT
32466502 TTTTTTATT
1 TTTTTTATT
*
32466511 TTTTTGATT
1 TTTTTTATT
*
32466520 TTTTTGATT
1 TTTTTTATT
32466529 TTTTTTA
1 TTTTTTA
32466536 GTCTGAACTC
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
8 10 0.14
9 50 0.70
10 5 0.07
12 6 0.08
ACGTcount: A:0.09, C:0.07, G:0.05, T:0.79
Consensus pattern (9 bp):
TTTTTTATT
Found at i:32470192 original size:109 final size:109
Alignment explanation
Indices: 32470033--32470310 Score: 441
Period size: 109 Copynumber: 2.6 Consensus size: 109
32470023 GTTAAACAGG
* * * *
32470033 AAATCGAAACCAAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
32470097 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * *
32470141 AAATCGACACCCAGCGCCTTAGGGCGTGTTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
32470206 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * *
32470250 AAAACAACACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACGCTAAATATTGCCT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCT
32470311 CGATTAGAAA
Statistics
Matches: 154, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
108 23 0.15
109 131 0.85
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (109 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:32470609 original size:16 final size:17
Alignment explanation
Indices: 32470590--32470631 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
32470580 TATATAGATA
32470590 TACATATATAAA-TATG
1 TACATATATAAAGTATG
* *
32470606 TACATATAAAAAGTATT
1 TACATATATAAAGTATG
32470623 TA-ATATATA
1 TACATATATA
32470632 TTAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TACATATATAAAGTATG
Found at i:32470799 original size:3 final size:3
Alignment explanation
Indices: 32470793--32470825 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
32470783 GATGATGATG
*
32470793 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32470826 TTAAAAGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32471614 original size:8 final size:8
Alignment explanation
Indices: 32471601--32471635 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
32471591 GAGTTGACGC
32471601 GGCAAGTG
1 GGCAAGTG
32471609 GGCAAGTG
1 GGCAAGTG
32471617 GGCAAGTG
1 GGCAAGTG
*
32471625 GGCAAATG
1 GGCAAGTG
32471633 GGC
1 GGC
32471636 GGTGATGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.49, T:0.11
Consensus pattern (8 bp):
GGCAAGTG
Found at i:32474655 original size:34 final size:34
Alignment explanation
Indices: 32474612--32474680 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
32474602 AGGTCCAATA
*
32474612 TGGGGTGTTACAAGAAGAATCTACTGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
32474646 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
32474680 T
1 T
32474681 CCGCAGCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (34 bp):
TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
Found at i:32475580 original size:19 final size:19
Alignment explanation
Indices: 32475556--32475617 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 19
32475546 CTCTTGCTGG
32475556 TTCTTTGTTCCTCTACTGC
1 TTCTTTGTTCCTCTACTGC
32475575 TTCTTTGTTCTTCTTCCTCTACTGC
1 TTCTTTG------TTCCTCTACTGC
*
32475600 TTCTTTGTTCTTCTACTG
1 TTCTTTGTTCCTCTACTG
32475618 GTGCTAGTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
19 17 0.47
25 19 0.53
ACGTcount: A:0.05, C:0.29, G:0.10, T:0.56
Consensus pattern (19 bp):
TTCTTTGTTCCTCTACTGC
Found at i:32475591 original size:25 final size:25
Alignment explanation
Indices: 32475563--32475613 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32475553 TGGTTCTTTG
32475563 TTCCTCTACTGCTTCTTTGTTCTTC
1 TTCCTCTACTGCTTCTTTGTTCTTC
32475588 TTCCTCTACTGCTTCTTTGTTCTTC
1 TTCCTCTACTGCTTCTTTGTTCTTC
32475613 T
1 T
32475614 ACTGGTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.04, C:0.31, G:0.08, T:0.57
Consensus pattern (25 bp):
TTCCTCTACTGCTTCTTTGTTCTTC
Found at i:32475628 original size:25 final size:25
Alignment explanation
Indices: 32475600--32475672 Score: 137
Period size: 25 Copynumber: 2.9 Consensus size: 25
32475590 CCTCTACTGC
*
32475600 TTCTTTGTTCTTCTACTGGTGCTAG
1 TTCTTTGTTCTTCTGCTGGTGCTAG
32475625 TTCTTTGTTCTTCTGCTGGTGCTAG
1 TTCTTTGTTCTTCTGCTGGTGCTAG
32475650 TTCTTTGTTCTTCTGCTGGTGCT
1 TTCTTTGTTCTTCTGCTGGTGCT
32475673 TTGTTCCTCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.04, C:0.21, G:0.22, T:0.53
Consensus pattern (25 bp):
TTCTTTGTTCTTCTGCTGGTGCTAG
Found at i:32475630 original size:50 final size:50
Alignment explanation
Indices: 32475575--32475672 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
32475565 CCTCTACTGC
32475575 TTCTTTGTTCTTCTTCCT-CTACT-GCTTCTTTGTTCTTCTACTGGTGCTAG
1 TTCTTTGTTCTTC-TCCTGCTACTAG-TTCTTTGTTCTTCTACTGGTGCTAG
* * * *
32475625 TTCTTTGTTCTTCTGCTGGTGCTAGTTCTTTGTTCTTCTGCTGGTGCT
1 TTCTTTGTTCTTCTCCTGCTACTAGTTCTTTGTTCTTCTACTGGTGCT
32475673 TTGTTCCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 3 0.07
50 38 0.90
51 1 0.02
ACGTcount: A:0.04, C:0.23, G:0.18, T:0.54
Consensus pattern (50 bp):
TTCTTTGTTCTTCTCCTGCTACTAGTTCTTTGTTCTTCTACTGGTGCTAG
Found at i:32475685 original size:25 final size:25
Alignment explanation
Indices: 32475607--32475685 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
32475597 TGCTTCTTTG
* * *
32475607 TTCTTCTACTGGTGCTAGTTCTTTG
1 TTCTTCTGCTGGTGCTAGTTCTCTC
* *
32475632 TTCTTCTGCTGGTGCTAGTTCTTTG
1 TTCTTCTGCTGGTGCTAGTTCTCTC
*
32475657 TTCTTCTGCTGGTGCTTTGTTC-CTC
1 TTCTTCTGCTGGTGC-TAGTTCTCTC
32475682 TTCT
1 TTCT
32475686 CCACCACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 44 0.90
26 5 0.10
ACGTcount: A:0.04, C:0.23, G:0.20, T:0.53
Consensus pattern (25 bp):
TTCTTCTGCTGGTGCTAGTTCTCTC
Found at i:32478741 original size:15 final size:15
Alignment explanation
Indices: 32478721--32478773 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
32478711 CAAACTATTT
32478721 TTAATTACATAAATA
1 TTAATTACATAAATA
*
32478736 TTAATTACA-AACT-
1 TTAATTACATAAATA
32478749 TATAATTACATAAATA
1 T-TAATTACATAAATA
32478765 TTAATTACA
1 TTAATTACA
32478774 AACTTGTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.33
15 20 0.61
16 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTACATAAATA
Found at i:32478756 original size:14 final size:15
Alignment explanation
Indices: 32478704--32478778 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
32478694 AATAATCATC
*
32478704 TTAATTACAAACTATTT
1 TTAATTACAAAC--TTA
*
32478721 TTAATTACATAA-ATA
1 TTAATTACA-AACTTA
32478736 TTAATTACAAACTTA
1 TTAATTACAAACTTA
*
32478751 -TAATTACATAA-ATA
1 TTAATTACA-AACTTA
32478765 TTAATTACAAACTT
1 TTAATTACAAACTT
32478779 GTGCCTATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 14 0.29
15 23 0.48
17 9 0.19
18 2 0.04
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATTACAAACTTA
Found at i:32478763 original size:29 final size:29
Alignment explanation
Indices: 32478704--32478778 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 29
32478694 AATAATCATC
*
32478704 TTAATTACAAACTATTTTTAATTACATAAATA
1 TTAATTACAAAC---TTATAATTACATAAATA
32478736 TTAATTACAAACTTATAATTACATAAATA
1 TTAATTACAAACTTATAATTACATAAATA
32478765 TTAATTACAAACTT
1 TTAATTACAAACTT
32478779 GTGCCTATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 30 0.71
32 12 0.29
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAATTACAAACTTATAATTACATAAATA
Found at i:32479678 original size:18 final size:18
Alignment explanation
Indices: 32479655--32479720 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
32479645 AAAATATGAG
32479655 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
32479673 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTT
32479691 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
32479709 AAATGATTTTCA
1 AAATGATGTTCA
32479721 AATTGATGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (18 bp):
AAATGATGTTCACATTTT
Found at i:32480298 original size:72 final size:72
Alignment explanation
Indices: 32480144--32480316 Score: 235
Period size: 72 Copynumber: 2.4 Consensus size: 72
32480134 AACAACAATG
* * *
32480144 CTAAACTT-GTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATATTCTACTT
1 CTAAA-TTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
32480208 ATTTATGT
65 ATTTATGT
* * *
32480216 GT-AATCTAGTTTTATTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
32480280 ATTT-TTT
65 ATTTATGT
32480287 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAATAGTTGTTTAT
32480317 ATGTTATTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 1 0.01
71 5 0.06
72 78 0.90
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:32482292 original size:13 final size:13
Alignment explanation
Indices: 32482271--32482334 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
32482261 ACACTCAAAA
32482271 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
32482284 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
32482297 TTTTCCACAGCAG
1 TTTTCAAAAGCAC
*
32482310 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
32482323 TTTTCAAAAGCA
1 TTTTCAAAAGCA
32482335 ATGAAGAACT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:32485659 original size:17 final size:16
Alignment explanation
Indices: 32485622--32485652 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32485612 GATTGAATCA
*
32485622 AATTTTATTAATTTTG
1 AATTTTAATAATTTTG
32485638 AATTTTAATAATTTT
1 AATTTTAATAATTTT
32485653 TTAATTTGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
AATTTTAATAATTTTG
Found at i:32489206 original size:22 final size:22
Alignment explanation
Indices: 32489181--32489227 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
32489171 AGTGATCCAG
32489181 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
32489203 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
32489225 TTA
1 TTA
32489228 CACTGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (22 bp):
TTAAGTTCACCAACTACAACTC
Found at i:32493968 original size:23 final size:22
Alignment explanation
Indices: 32493925--32493968 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
32493915 TTCTAAGTTG
32493925 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
32493948 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
32493969 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:32494063 original size:45 final size:45
Alignment explanation
Indices: 32494013--32494101 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
32494003 AAACGATACT
* * * *
32494013 CGGTGGATTCAGCATATAGCAACCACCTTATTAATAAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
*
32494058 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGT
32494102 TTGGTTCACA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
Found at i:32494277 original size:50 final size:51
Alignment explanation
Indices: 32494112--32494298 Score: 202
Period size: 51 Copynumber: 3.7 Consensus size: 51
32494102 TTGGTTCACA
* *
32494112 TAGTAGCTTGCACATAGTACTACACATGTGACCATTATCATT-CGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TATCATTCCGGTACACG
** * * * * * *
32494163 TAGTATTCTGCACATAGTACTACACACGTGATCGA-AAC-TATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATATCAT-TCCGGTACACG
* *
32494214 TAGTAGCCTGCACATAGTACTACACATGCGA-CATATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATATCATTCCGGTACACG
*
32494264 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
32494299 CACTTTCACT
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
49 2 0.02
50 41 0.38
51 63 0.58
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATATCATTCCGGTACACG
Found at i:32494293 original size:101 final size:102
Alignment explanation
Indices: 32494110--32494294 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
32494100 GTTTGGTTCA
* * **
32494110 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTATCATTCGATACACGTAGTATTCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATTCGATACACGTAGTAGCCTGCA
32494175 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
66 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* *
32494212 CATAGTAGCCTGCACATAGTACTACACATGCGA-CA-TATCATTCCGGTACATGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATT-CGATACACGTAGTAGCCTGC
32494275 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
32494295 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 7 0.09
101 38 0.50
102 31 0.41
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATTCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:32501477 original size:20 final size:20
Alignment explanation
Indices: 32501428--32501465 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
32501418 AATGATGAAG
32501428 TTGAAGTATTAGTTGTTAAT
1 TTGAAGTATTAGTTGTTAAT
32501448 TTGAAGTATTAGTTGTTA
1 TTGAAGTATTAGTTGTTA
32501466 TTTATAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
TTGAAGTATTAGTTGTTAAT
Found at i:32504167 original size:11 final size:11
Alignment explanation
Indices: 32504151--32504176 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32504141 ACATGGCTTG
32504151 AATTTTAGGGT
1 AATTTTAGGGT
32504162 AATTTTAGGGT
1 AATTTTAGGGT
32504173 AATT
1 AATT
32504177 AATAAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (11 bp):
AATTTTAGGGT
Found at i:32512943 original size:77 final size:77
Alignment explanation
Indices: 32512816--32512970 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
32512806 GGTAGGTTAA
32512816 TATTGAATTTGTATAAGCTTACTAAGTATTCTTAATACTTACGCCTAGGTTGCTTTTATCTTGTA
1 TATTGAATTTGTATAAGCTTACTAAGTATTCTTAATACTTACGCCTAGGTTGCTTTTATCTTGTA
32512881 GATTTTGAACGT
66 GATTTTGAACGT
32512893 TATTGAATTTGTATAAGCTTACTAAGTATTCTTAATACTTACGCCTAGGTTGCTTTTATCTTGTA
1 TATTGAATTTGTATAAGCTTACTAAGTATTCTTAATACTTACGCCTAGGTTGCTTTTATCTTGTA
32512958 GATTTTGAACGT
66 GATTTTGAACGT
32512970 T
1 T
32512971 CAGAACATGT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (77 bp):
TATTGAATTTGTATAAGCTTACTAAGTATTCTTAATACTTACGCCTAGGTTGCTTTTATCTTGTA
GATTTTGAACGT
Found at i:32514523 original size:19 final size:19
Alignment explanation
Indices: 32514499--32514536 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32514489 ATAATAATAT
32514499 TAAAATAGAATTCTCAAAC
1 TAAAATAGAATTCTCAAAC
32514518 TAAAATAGAATTCTCAAAC
1 TAAAATAGAATTCTCAAAC
32514537 AACTCATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (19 bp):
TAAAATAGAATTCTCAAAC
Found at i:32516059 original size:22 final size:20
Alignment explanation
Indices: 32516012--32516060 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
32516002 ATTAATAATT
*
32516012 TATAAAATTTAATTTGAATA
1 TATAAAATTTAATTTAAATA
32516032 TATAAAATTTATATTTTAAATA
1 TATAAAATTTA-A-TTTAAATA
*
32516054 TTTAAAA
1 TATAAAA
32516061 AATAATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 1 0.04
22 13 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATAAAATTTAATTTAAATA
Found at i:32516402 original size:17 final size:16
Alignment explanation
Indices: 32516368--32516414 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 16
32516358 GAAAATTATT
32516368 TTTAAAAA-ATTTAAA
1 TTTAAAAATATTTAAA
*
32516383 TTTAAAAATATTATATA
1 TTTAAAAATATT-TAAA
32516400 TTTACAAACATATTT
1 TTTA-AAA-ATATTT
32516415 TAAAAAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.30
16 3 0.11
17 7 0.26
18 4 0.15
19 5 0.19
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAAATATTTAAA
Found at i:32528937 original size:24 final size:24
Alignment explanation
Indices: 32528903--32528954 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
32528893 TTTCTAGAAG
*
32528903 ATTTAATATTTATTAGTATAATAT
1 ATTTAACATTTATTAGTATAATAT
32528927 ATTTAACATTTATTAGTATAATAT
1 ATTTAACATTTATTAGTATAATAT
32528951 ATTT
1 ATTT
32528955 GACACTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (24 bp):
ATTTAACATTTATTAGTATAATAT
Found at i:32528965 original size:24 final size:24
Alignment explanation
Indices: 32528914--32528966 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
32528904 TTTAATATTT
* *
32528914 ATTAGTATAATATATTTAACATTT
1 ATTAGTATAATATATTTAACACTG
*
32528938 ATTAGTATAATATATTTGACACTG
1 ATTAGTATAATATATTTAACACTG
32528962 ATTAG
1 ATTAG
32528967 AATTAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (24 bp):
ATTAGTATAATATATTTAACACTG
Found at i:32533344 original size:24 final size:24
Alignment explanation
Indices: 32533317--32533370 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
32533307 ATTTAGTATA
*
32533317 TATTAGTATAATATATTTAACATT
1 TATTAGCATAATATATTTAACATT
*
32533341 TATTAGCATAATATATTTAACGTT
1 TATTAGCATAATATATTTAACATT
*
32533365 GATTAG
1 TATTAG
32533371 AATTAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (24 bp):
TATTAGCATAATATATTTAACATT
Found at i:32538211 original size:21 final size:21
Alignment explanation
Indices: 32538185--32538231 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
32538175 CAGCCTAGAC
32538185 GTTATGACCGAATCTTGAGGA
1 GTTATGACCGAATCTTGAGGA
*
32538206 GTTATGGCCGAATCTTGAGGA
1 GTTATGACCGAATCTTGAGGA
32538227 GTTAT
1 GTTAT
32538232 AAAATCTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (21 bp):
GTTATGACCGAATCTTGAGGA
Found at i:32538863 original size:202 final size:200
Alignment explanation
Indices: 32538476--32538874 Score: 654
Period size: 202 Copynumber: 2.0 Consensus size: 200
32538466 AAGTATATCA
* **
32538476 AAAAGTCTAACAAAATAAACCAAAAATCGAAAAACAAGTCCAAAAGTACCAATTGTCTAAAAAGT
1 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
* * *
32538541 CCATATTAAACAATAAGACTTAAAAACGATCTTATTATTGAGAATCCAACTCGAGCTTCCACACG
66 CCATATTAAACAATAAGACTTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACACA
* * ** * *
32538606 CTGTCCGATCCTAAGTTTGTTGATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAGCTCA
131 CCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACTCA
32538671 GTAAT
196 GTAAT
*
32538676 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTTTAAAAAGT
1 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
*
32538741 CCATATTAAACAATAAGACTATTAAAAACCATTTTATTACTGAGAATCCAACTCGAGCTTCCACA
66 CCATATTAAACAATAAGAC--TTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACA
32538806 CACCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACT
129 CACCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACT
32538871 CAGT
194 CAGT
32538875 GTGCAACTCT
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
200 80 0.44
202 103 0.56
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.24
Consensus pattern (200 bp):
AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
CCATATTAAACAATAAGACTTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACACA
CCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACTCA
GTAAT
Found at i:32541700 original size:217 final size:217
Alignment explanation
Indices: 32541325--32541755 Score: 817
Period size: 217 Copynumber: 2.0 Consensus size: 217
32541315 CCACACAAGG
32541325 GTCTCTCATATAAAGGTGCGCATTGAGTCTCCGTATCATTTAATTTCCTTTCCTGGCTTAGTCAA
1 GTCTCTCATATAAAGGTGCGCATTGAGTCTCCGTATCATTTAATTTCCTTTCCTGGCTTAGTCAA
* *
32541390 CCGAACCTCCTTCAAAGCCACATAAATAAAATGCATATGCAATCCCGTATATGGCCATTCGAACC
66 CCGAACCTCCTTCAAAGCCACATAAATAAAATGCATAAGCAATCCCGTATATGGCCATCCGAACC
*
32541455 TCTGCAAAGCCACATAAATATCATGCATAACATATACAACAATTCTCCAACAAATACTATCTATC
131 TCTGCAAAGCCACATAAACATCATGCATAACATATACAACAATTCTCCAACAAATACTATCTATC
32541520 ACACAACATATAATATGTCGAT
196 ACACAACATATAATATGTCGAT
32541542 GTCTCTCATATAAAGGTGCGCATTGAGTCTCCGTATCATTTAATTTCCTTTCCTGGCTTAGTCAA
1 GTCTCTCATATAAAGGTGCGCATTGAGTCTCCGTATCATTTAATTTCCTTTCCTGGCTTAGTCAA
32541607 CCGAACCTCCTTCAAAGCCACATAAATAAAATGCATAAGCAATCCCGTATATGGCCATCCGAACC
66 CCGAACCTCCTTCAAAGCCACATAAATAAAATGCATAAGCAATCCCGTATATGGCCATCCGAACC
* *
32541672 TCTGCAAAGCCACATAAACATCATGCATAACATATACAACAATTCTCCAACAAATACTGTCTATT
131 TCTGCAAAGCCACATAAACATCATGCATAACATATACAACAATTCTCCAACAAATACTATCTATC
32541737 ACACAACATATAATATGTC
196 ACACAACATATAATATGTC
32541756 AATTATACCA
Statistics
Matches: 209, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
217 209 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (217 bp):
GTCTCTCATATAAAGGTGCGCATTGAGTCTCCGTATCATTTAATTTCCTTTCCTGGCTTAGTCAA
CCGAACCTCCTTCAAAGCCACATAAATAAAATGCATAAGCAATCCCGTATATGGCCATCCGAACC
TCTGCAAAGCCACATAAACATCATGCATAACATATACAACAATTCTCCAACAAATACTATCTATC
ACACAACATATAATATGTCGAT
Found at i:32546665 original size:14 final size:12
Alignment explanation
Indices: 32546629--32546676 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
32546619 CCCATGTAGC
32546629 AACAACAAAGAAA
1 AACAA-AAAGAAA
32546642 AACAAAAAGAAA
1 AACAAAAAGAAA
32546654 AATCAGAAAAGAAA
1 AA-CA-AAAAGAAA
*
32546668 AAGAAAAAG
1 AACAAAAAG
32546677 CATCAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.44
13 8 0.25
14 10 0.31
ACGTcount: A:0.77, C:0.08, G:0.12, T:0.02
Consensus pattern (12 bp):
AACAAAAAGAAA
Found at i:32546684 original size:21 final size:19
Alignment explanation
Indices: 32546640--32546693 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
32546630 ACAACAAAGA
* *
32546640 AAAACAAAAAGAAAAATCAG
1 AAAA-AAAAAGAAAAAGCAC
32546660 AAAAGAAAAAGAAAAAGCATC
1 AAAA-AAAAAGAAAAAGCA-C
32546681 AAAAAAGAAAGAA
1 AAAAAA-AAAGAA
32546694 GATAAGGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.76, C:0.07, G:0.13, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAGCAC
Found at i:32554502 original size:88 final size:91
Alignment explanation
Indices: 32554302--32554508 Score: 224
Period size: 93 Copynumber: 2.3 Consensus size: 91
32554292 GATATATATA
* * * * ** *
32554302 TTGCAGGTTAAACTGCCAGATCAGATAATATTACGCAGCAAAGCTGAAGTATATTTAGTATAGTG
1 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGAAGTATATGCAGTACAGT-
*
32554367 GATTGCGGTAAACTGCTGTACAAATAGG
65 GATT-CGGTAAACAGCTGTACAAATAGG
*
32554395 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGACA-TATATGCGGTACAGT
1 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGA-AGTATATGCAGTACAGT
* * * *
32554459 -A-T-GGTAAACAGTTGTACCATTATG
65 GATTCGGTAAACAGCTGTACAAATAGG
* *
32554483 TTTCAGTTTAAACTTCCAGATCAGAT
1 TTGCAGTTTAAACTACCAGATCAGAT
32554509 CAGATCAGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
88 41 0.42
90 1 0.01
91 1 0.01
93 54 0.55
94 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (91 bp):
TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGAAGTATATGCAGTACAGTG
ATTCGGTAAACAGCTGTACAAATAGG
Found at i:32555705 original size:15 final size:14
Alignment explanation
Indices: 32555681--32555721 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
32555671 CTATTTTACA
32555681 AAGAGAAAAAGAAG
1 AAGAGAAAAAGAAG
32555695 AAGAGGAAAAAGAAG
1 AAGA-GAAAAAGAAG
*
32555710 AA-AAAAAAAGAA
1 AAGAGAAAAAGAA
32555722 CTTGCTACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 5 0.20
15 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAGAAG
Found at i:32556602 original size:22 final size:21
Alignment explanation
Indices: 32556577--32556619 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
32556567 TACAATCCAA
*
32556577 AACCGAATAATAGTAATAAAAT
1 AACCGAAAAATA-TAATAAAAT
* *
32556599 AACCTAAAAATATAATTAAAT
1 AACCGAAAAATATAATAAAAT
32556620 TAAAATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (21 bp):
AACCGAAAAATATAATAAAAT
Found at i:32557150 original size:14 final size:14
Alignment explanation
Indices: 32557133--32557164 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
32557123 ATGTAATAAG
32557133 TCATAGTAAATATA
1 TCATAGTAAATATA
*
32557147 TCATAGTAAATATT
1 TCATAGTAAATATA
32557161 TCAT
1 TCAT
32557165 GCATTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (14 bp):
TCATAGTAAATATA
Found at i:32566751 original size:22 final size:21
Alignment explanation
Indices: 32566726--32566766 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32566716 CTATTAGTTC
*
32566726 TAAAATCATTTTTAGAGACTTG
1 TAAAATCATATTTAG-GACTTG
*
32566748 TAAACTCATATTTAGGACT
1 TAAAATCATATTTAGGACT
32566767 GTATGCATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (21 bp):
TAAAATCATATTTAGGACTTG
Found at i:32572370 original size:9 final size:9
Alignment explanation
Indices: 32572330--32572363 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
32572320 TTAAAATAAA
32572330 TTTATAATTT
1 TTTA-AATTT
32572340 TTTAGAATTT
1 TTTA-AATTT
32572350 TTTAAATTT
1 TTTAAATTT
32572359 TTTAA
1 TTTAA
32572364 TTCTTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 10 0.43
10 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTAAATTT
Found at i:32578609 original size:20 final size:20
Alignment explanation
Indices: 32578584--32578623 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32578574 ACCTAAAGTC
32578584 AGTTGCTATTATTCTCGAAA
1 AGTTGCTATTATTCTCGAAA
*
32578604 AGTTGCTCTTATTCTCGAAA
1 AGTTGCTATTATTCTCGAAA
32578624 GAGATGTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (20 bp):
AGTTGCTATTATTCTCGAAA
Found at i:32580933 original size:29 final size:29
Alignment explanation
Indices: 32580900--32580963 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
32580890 AAATAATTTG
*
32580900 ATCTTTATCCAACCAATTTCAAATCTTCA
1 ATCTTTATCCAACCAACTTCAAATCTTCA
**
32580929 ATCTTTATCCAGTCAACTTCAAATCTTCA
1 ATCTTTATCCAACCAACTTCAAATCTTCA
32580958 ATCTTT
1 ATCTTT
32580964 CAATCTACCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.41
Consensus pattern (29 bp):
ATCTTTATCCAACCAACTTCAAATCTTCA
Found at i:32585584 original size:3 final size:3
Alignment explanation
Indices: 32585571--32585633 Score: 81
Period size: 3 Copynumber: 20.7 Consensus size: 3
32585561 AGTGTACAAG
* *
32585571 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT GAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
32585617 ATT GAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
32585634 CAACATCAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32593044 original size:30 final size:30
Alignment explanation
Indices: 32593008--32593072 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
32592998 CAATTGACCT
* *
32593008 ACTTGTGAAGGTTCGGGGCTAAGACACGAA
1 ACTTGTGAAGGTTCGGGGATAAGAAACGAA
32593038 ACTTGTGAAGGTTCGGGGATAAGAAACGAA
1 ACTTGTGAAGGTTCGGGGATAAGAAACGAA
*
32593068 TCTTG
1 ACTTG
32593073 GGCCAAACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.23
Consensus pattern (30 bp):
ACTTGTGAAGGTTCGGGGATAAGAAACGAA
Found at i:32594459 original size:3 final size:3
Alignment explanation
Indices: 32594446--32594510 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
32594436 TTACTATTTA
*
32594446 ATT ATTT ATT ATT A-T ATT A-T ATT ATT ACTT GTT CATT ATT ATT ATTT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT A-TT ATT -ATT ATT ATT A-TT
* *
32594493 GTT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT
32594511 GTAATTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 37 0.74
4 9 0.18
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32594485 original size:17 final size:16
Alignment explanation
Indices: 32594465--32594505 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
32594455 TATTATATTA
32594465 TATTATTACTTGTTCAT
1 TATTATTACTTGTT-AT
*
32594482 TATTATTATTTGTTAT
1 TATTATTACTTGTTAT
32594498 TATTATTA
1 TATTATTA
32594506 ATATTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (16 bp):
TATTATTACTTGTTAT
Found at i:32594502 original size:19 final size:18
Alignment explanation
Indices: 32594446--32594510 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 18
32594436 TTACTATTTA
*
32594446 ATTATTTATTA-TTATATT
1 ATTA-TTATTATTTGTATT
* *
32594464 A-TATTATTACTTGT-TC
1 ATTATTATTATTTGTATT
32594480 ATTATTATTATTTGTTATT
1 ATTATTATTATTTG-TATT
*
32594499 ATTATTAATATT
1 ATTATTATTATT
32594511 GTAATTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 8 0.21
17 16 0.42
18 2 0.05
19 12 0.32
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTATTATTATTTGTATT
Found at i:32599618 original size:47 final size:46
Alignment explanation
Indices: 32599560--32599649 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
32599550 AAAAAGGTGG
* * * *
32599560 GACCAAGGTGAAAGCTTACAAAGGGCGCTTTGAGTCAAAAAAAAAGA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGT-AAAAAAAAAGA
*
32599607 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
32599650 TGGAGAGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
46 8 0.21
47 30 0.79
ACGTcount: A:0.44, C:0.17, G:0.26, T:0.13
Consensus pattern (46 bp):
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAGA
Found at i:32601087 original size:44 final size:44
Alignment explanation
Indices: 32601033--32601173 Score: 160
Period size: 44 Copynumber: 3.2 Consensus size: 44
32601023 AAGGAAAAAG
*
32601033 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATTAAAGATAA
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
* * * *
32601077 CAGATCTTGTCTTCCCATACTAGTGGC--GAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTT--CAT-GTACTGGCGTGAAGTAGATCAAAGATAA
* * * *
32601122 TAGATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
32601166 CAGATCTT
1 CAGATCTT
32601174 TCCTTCCTAC
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 6 0.08
43 3 0.04
44 33 0.42
45 27 0.35
46 3 0.04
47 6 0.08
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
Found at i:32601127 original size:45 final size:45
Alignment explanation
Indices: 32600945--32601135 Score: 156
Period size: 44 Copynumber: 4.2 Consensus size: 45
32600935 AAGCAGCAGG
* * * * * * *
32600945 TCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAA-TATACAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
* * * *
32600989 TCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAA-G-AAAA-CAGA
* * ** *
32601037 TCTTGTCTT--CAT-GTACTGGCGTGAAGTAGATTAAAGATAACAGA
1 TCTTGTCTTCCCATACTAGTGGC--GAAGTAGATCGAAGAAAACAGA
*
32601081 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAATAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
32601126 TCTTGTCTTC
1 TCTTGTCTTC
32601136 ATGTACTGGC
Statistics
Matches: 114, Mismatches: 24, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
44 42 0.37
45 36 0.32
46 7 0.06
47 18 0.16
48 11 0.10
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
Found at i:32601170 original size:89 final size:89
Alignment explanation
Indices: 32600945--32601785 Score: 737
Period size: 89 Copynumber: 9.4 Consensus size: 89
32600935 AAGCAGCAGG
* * * * * * * * *
32600945 TCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAATATA-CAGATCTCGCCTTCCCATACTGGT
1 TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGT
*
32601009 GGCGAAGCAGATCGAAGGAAAAAGCAGA
65 GGCGAAGTAGATCGAA-G-AAAA-CAGA
* * * *
32601037 TCTTGTCTTCATGTACTGGCGTGAAGTAGATTAAAGATAACAGATCTTGTCTTCCCATACTAGTG
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
*
32601102 GCGAAGTAGATCGAAGAAAATAGA
66 GCGAAGTAGATCGAAGAAAACAGA
* * *
32601126 TCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAATATAGCAGATCTT-TCCTT-CC-TACATAG
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGT-CTTCCCATAC-T-G
*** * * *** *
32601188 ACAGCAAAGCAGATCGAAGATGGCTGA
63 GTGGCGAAGTAGATCGAAGAAAACAGA
* * * * * * ** ** * ** * **
32601215 T-TT-TACCTCCTCGTGGTT-ACAGTGGAGTACATTGAAGCCAGTATTTCTATCTCCTTGGGCA-
1 TCTTGT-CTTCAT-GT-ATTGGC-GTGAAGTAGATCAAAGATAGCAGATCT-TGT-CTT-CCCAT
* * * * ***
32601276 GC-AGT-G-GAA-TAGATTGTAGATTTCAGA
59 ACTGGTGGCGAAGTAGATCGAAGAAAACAGA
32601303 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATA-CTAGATCTTGTCTTCCCATACTGGT
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC-AGATCTTGTCTTCCCATACTGGT
*
32601367 GGCAAAGTAGATCGAAGAAAACAGA
65 GGCGAAGTAGATCGAAGAAAACAGA
32601392 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
* * *
32601457 GTGGAA-TAGATCAAAGAAAGCAGA
66 G-CGAAGTAGATCGAAGAAAACAGA
*
32601481 TCTTGTCTTCATATATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTC-TCCCAATACTGGT
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCC-ATACTGGT
* * *
32601545 GGTGGAA-TAGATCAAAGAAAGCAGA
65 GG-CGAAGTAGATCGAAGAAAACAGA
* * *
32601570 TCTTGTCTTCATATATTGGCGTGAAGTAGATCAAAG-TCAACAGATCTTGTCTCCCCATACTGGT
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAT-AGCAGATCTTGTCTTCCCATACTGGT
* * *
32601634 GGTGGAGTAGATCGAAGAAAGCAGA
65 GGCGAAGTAGATCGAAGAAAACAGA
*
32601659 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAA-AGTCAACAGATCTTGTCTTCCCATACTGG
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-T-AGCAGATCTTGTCTTCCCATACTGG
* * **
32601723 TGGTGGAGTAGATCGAAGAAAATGGA
64 TGGCGAAGTAGATCGAAGAAAACAGA
*
32601749 TCTTGTCTTCACGTATTGGCGTGAAGTAGATCAAAGA
1 TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA
32601786 GGAAAGCTGA
Statistics
Matches: 621, Mismatches: 97, Indels: 63
0.80 0.12 0.08
Matches are distributed among these distances:
84 2 0.00
85 4 0.01
86 4 0.01
87 24 0.04
88 35 0.06
89 364 0.59
90 112 0.18
91 17 0.03
92 57 0.09
94 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (89 bp):
TCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
GCGAAGTAGATCGAAGAAAACAGA
Found at i:32601393 original size:45 final size:43
Alignment explanation
Indices: 32601325--32601803 Score: 336
Period size: 45 Copynumber: 10.7 Consensus size: 43
32601315 GTATTGGCGT
*
32601325 GAAGTAGATCAAAG-ATACTAGATCTTGTCTTCCCATACTGGTG
1 GAAGTAGATCAAAGAAAAC-AGATCTTGTCTTCCCATACTGGTG
* *** * *
32601368 GCAAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCG
1 G--AAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
* *
32601413 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTG
1 -GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATAC---TGGTG
* ** * *
32601460 GAA-TAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCG
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
* *
32601502 TGAAGTAGATCAAAGATAGCAGATCTTGTC-TCCCAATACTGGTGGTG
1 -GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCC-ATAC---TGGTG
* ** * *
32601549 GAA-TAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCG
1 GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
** *
32601591 TGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGG
1 -GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGT-G
* * * *** * *
32601636 TGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
1 -GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
**
32601680 TGAAGTAGATCAAAAGTCAACAGATCTTGTCTTCCCATACTGGTGG
1 -GAAGTAGATC-AAAGAAAACAGATCTTGTCTTCCCATACTGGT-G
* * ** * * * *
32601726 TGGAGTAGATCGAAGAAAATGGATCTTGTCTTCACGTATTGGCG
1 -GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
*
32601770 TGAAGTAGATCAAAGAGGAAAGCTGATCTTGTCT
1 -GAAGTAGATCAAAGA--AAA-CAGATCTTGTCT
32601804 CCCTATATTA
Statistics
Matches: 341, Mismatches: 73, Indels: 40
0.75 0.16 0.09
Matches are distributed among these distances:
42 8 0.02
43 9 0.03
44 113 0.33
45 167 0.49
46 26 0.08
47 18 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (43 bp):
GAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACTGGTG
Found at i:32601562 original size:134 final size:132
Alignment explanation
Indices: 32601329--32601832 Score: 473
Period size: 134 Copynumber: 3.7 Consensus size: 132
32601319 TGGCGTGAAG
* * * * * *
32601329 TAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTG-GCAAAGTAGATCGAAGAAAACAGAT
1 TAGATCAAAGAAAC-AGATCTTGTCTTCACATATTGGCGTG--AAGTAGATCAAAGAAAGCAGAT
* * *
32601393 CTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGG
63 CTTGTCTCCATATACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGG
32601458 TGGAA
128 TGGAA
* *
32601463 TAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCAAAGATAGCAGATCT
1 TAGATCAAAGAAA-CAGATCTTGTCTTCACATATTGGCGTGAAGTAGATCAAAGAAAGCAGATCT
* * ** * *
32601528 TGTCTCCCA-ATACTGGTGGTGGAA-TAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGG-C
65 TGTCT-CCATATACTGG-CGT-GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTG
32601590 GT-GAA
127 GTGGAA
* * * * * * *
32601595 GTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAGCAGAT
1 -TAGATCAAAG-AAACAGATCTTGTCTTCACATATTGG-CGTGAAGTAGATCAAAGAAAGCAGAT
* * * *
32601660 CTTGTCTTCATGTATTGGCGTGAAGTAGATCAAA-AGTCAACAGATCTTGTCTTCCCATACTGGT
63 CTTGTCTCCATATACTGGCGTGAAGTAGATCAAAGA-T-AGCAGATCTTGTCTTCCCATACTGGT
*
32601724 GGTGGAG
126 GGTGGAA
* * *
32601731 TAGATCGAAGAAA-ATGGATCTTGTCTTCACGTATTGGCGTGAAGTAGATCAAAGAGGAAAGCTG
1 TAGATCAAAGAAACA--GATCTTGTCTTCACATATTGGCGTGAAGTAGATC-AA-A-GAAAGCAG
* * *
32601795 ATCTTGTCTCCCTATATTAGGCAGTGGAGTAGATCAAA
61 ATCTTGTCTCCATATACT-GGC-GTGAAGTAGATCAAA
32601833 TATGACAAAT
Statistics
Matches: 298, Mismatches: 51, Indels: 37
0.77 0.13 0.10
Matches are distributed among these distances:
132 7 0.02
133 76 0.26
134 139 0.47
135 34 0.11
136 3 0.01
137 22 0.07
138 3 0.01
139 14 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (132 bp):
TAGATCAAAGAAACAGATCTTGTCTTCACATATTGGCGTGAAGTAGATCAAAGAAAGCAGATCTT
GTCTCCATATACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGG
AA
Found at i:32602844 original size:47 final size:48
Alignment explanation
Indices: 32602786--32602881 Score: 185
Period size: 47 Copynumber: 2.0 Consensus size: 48
32602776 ATGCTGCAAA
32602786 CAATTTAAAAAAAAAACAAAGCTGTTTTAAATTATATTAGCGAAACGG
1 CAATTTAAAAAAAAAACAAAGCTGTTTTAAATTATATTAGCGAAACGG
32602834 CAATTT-AAAAAAAAACAAAGCTGTTTTAAATTATATTAGCGAAACGG
1 CAATTTAAAAAAAAAACAAAGCTGTTTTAAATTATATTAGCGAAACGG
32602881 C
1 C
32602882 GCCGTTTCAG
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 42 0.88
48 6 0.12
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.27
Consensus pattern (48 bp):
CAATTTAAAAAAAAAACAAAGCTGTTTTAAATTATATTAGCGAAACGG
Found at i:32603234 original size:3 final size:3
Alignment explanation
Indices: 32603221--32603285 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
32603211 TTACTATTTA
*
32603221 ATT ATTT ATT ATT A-T ATT A-T ATT ATT ACTT GTT CATT ATT ATT ATTT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT A-TT ATT -ATT ATT ATT A-TT
* *
32603268 GTT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT
32603286 GTAATTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 37 0.74
4 9 0.18
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32603260 original size:17 final size:16
Alignment explanation
Indices: 32603240--32603280 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
32603230 TATTATATTA
32603240 TATTATTACTTGTTCAT
1 TATTATTACTTGTT-AT
*
32603257 TATTATTATTTGTTAT
1 TATTATTACTTGTTAT
32603273 TATTATTA
1 TATTATTA
32603281 ATATTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (16 bp):
TATTATTACTTGTTAT
Found at i:32603277 original size:19 final size:18
Alignment explanation
Indices: 32603221--32603285 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 18
32603211 TTACTATTTA
*
32603221 ATTATTTATTA-TTATATT
1 ATTA-TTATTATTTGTATT
* *
32603239 A-TATTATTACTTGT-TC
1 ATTATTATTATTTGTATT
32603255 ATTATTATTATTTGTTATT
1 ATTATTATTATTTG-TATT
*
32603274 ATTATTAATATT
1 ATTATTATTATT
32603286 GTAATTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 8 0.21
17 16 0.42
18 2 0.05
19 12 0.32
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTATTATTATTTGTATT
Found at i:32603451 original size:20 final size:20
Alignment explanation
Indices: 32603414--32603452 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32603404 TATATTACAA
* *
32603414 ATGTGTGTATTTATATATAT
1 ATGTGTGTATGTAAATATAT
*
32603434 ATGTGTGTGTGTAAATATA
1 ATGTGTGTATGTAAATATA
32603453 CATGCACATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (20 bp):
ATGTGTGTATGTAAATATAT
Found at i:32607878 original size:32 final size:32
Alignment explanation
Indices: 32607837--32607898 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
32607827 TTTGTGTACA
*
32607837 TAATTAAATAATTTTATTTTTAATTTTTTAGT
1 TAATTAAATAATTTTATTTTAAATTTTTTAGT
*
32607869 TAATTAAATATTTTTATTTTAAATTTTTTA
1 TAATTAAATAATTTTATTTTAAATTTTTTA
32607899 TTTACCTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (32 bp):
TAATTAAATAATTTTATTTTAAATTTTTTAGT
Found at i:32607902 original size:13 final size:15
Alignment explanation
Indices: 32607840--32607901 Score: 65
Period size: 14 Copynumber: 4.1 Consensus size: 15
32607830 GTGTACATAA
*
32607840 TTAAATAATTTTATT
1 TTAAATATTTTTATT
*
32607855 TTTAAT-TTTTTAGTT
1 TTAAATATTTTTA-TT
32607870 AATTAAATATTTTTATT
1 --TTAAATATTTTTATT
32607887 TTAAAT-TTTTTATT
1 TTAAATATTTTTATT
32607901 T
1 T
32607902 ACCTTGTTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
14 14 0.35
15 13 0.32
17 7 0.17
18 6 0.15
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:32609027 original size:17 final size:16
Alignment explanation
Indices: 32608977--32609027 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
32608967 CAAAAAAAAC
32608977 TTTTTATTTAAA-ATT
1 TTTTTATTTAAATATT
* * *
32608992 CTTTTAATTTTAATTTT
1 -TTTTTATTTAAATATT
32609009 TTTTTCATTTAAATATT
1 TTTTT-ATTTAAATATT
32609026 TT
1 TT
32609028 AATTATAGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTATTTAAATATT
Found at i:32613030 original size:20 final size:19
Alignment explanation
Indices: 32613007--32613078 Score: 58
Period size: 19 Copynumber: 3.6 Consensus size: 19
32612997 TATTCAACCT
32613007 AATATACAGTTATAA-AATTA
1 AATATA-AGTT-TAATAATTA
32613027 AATATAAGTTTAATAATTA
1 AATATAAGTTTAATAATTA
* *
32613046 TGCAATA-AATTTTAAAAAATTA
1 ---AATATAAGTTT-AATAATTA
32613068 AATATAAGTTT
1 AATATAAGTTT
32613079 GATTGAAATG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.07
19 13 0.30
20 11 0.26
21 5 0.12
22 11 0.26
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (19 bp):
AATATAAGTTTAATAATTA
Found at i:32639124 original size:117 final size:117
Alignment explanation
Indices: 32638918--32639159 Score: 484
Period size: 117 Copynumber: 2.1 Consensus size: 117
32638908 GATTAGAATC
32638918 CAATTTAACCATAACTCATTAGGGACCTTCTGTTTTCTATCCCTACCAATAATTCATAACATATT
1 CAATTTAACCATAACTCATTAGGGACCTTCTGTTTTCTATCCCTACCAATAATTCATAACATATT
32638983 TTTATTTAATTTGATTTGGTCCCTAATGTACTAAACTAACAATTTAGCTTTA
66 TTTATTTAATTTGATTTGGTCCCTAATGTACTAAACTAACAATTTAGCTTTA
32639035 CAATTTAACCATAACTCATTAGGGACCTTCTGTTTTCTATCCCTACCAATAATTCATAACATATT
1 CAATTTAACCATAACTCATTAGGGACCTTCTGTTTTCTATCCCTACCAATAATTCATAACATATT
32639100 TTTATTTAATTTGATTTGGTCCCTAATGTACTAAACTAACAATTTAGCTTTA
66 TTTATTTAATTTGATTTGGTCCCTAATGTACTAAACTAACAATTTAGCTTTA
32639152 CAATTTAA
1 CAATTTAA
32639160 TCATTTTCAG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 125 1.00
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.41
Consensus pattern (117 bp):
CAATTTAACCATAACTCATTAGGGACCTTCTGTTTTCTATCCCTACCAATAATTCATAACATATT
TTTATTTAATTTGATTTGGTCCCTAATGTACTAAACTAACAATTTAGCTTTA
Found at i:32639993 original size:27 final size:28
Alignment explanation
Indices: 32639938--32640027 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
32639928 TAAATTTATC
* *
32639938 TCTAGTTTTAGGGATTTCTTGATG-TTTT
1 TCTA-TTTTATGGATTTCTTGAAGCTTTT
*
32639966 TCTTATTTT-TGGATTTCTTGAAACTTTT
1 TC-TATTTTATGGATTTCTTGAAGCTTTT
** *
32639994 TCTATTTTATGTTTTTCTTGAAGCTTTC
1 TCTATTTTATGGATTTCTTGAAGCTTTT
32640022 TCTATT
1 TCTATT
32640028 GTTTAGGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 17 0.33
28 33 0.63
29 2 0.04
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.60
Consensus pattern (28 bp):
TCTATTTTATGGATTTCTTGAAGCTTTT
Found at i:32661481 original size:32 final size:33
Alignment explanation
Indices: 32661445--32661508 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
32661435 TTAATTTAAG
32661445 ATTTTATTAAAAAG-ATTAAA-TAGAATTTTTTT
1 ATTTT-TTAAAAAGAATTAAAGTAGAATTTTTTT
* *
32661477 ATTTTTTAAAGAGAATTAAAGTATAATTTTTT
1 ATTTTTTAAAAAGAATTAAAGTAGAATTTTTT
32661509 AACATATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 7 0.25
32 11 0.39
33 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (33 bp):
ATTTTTTAAAAAGAATTAAAGTAGAATTTTTTT
Found at i:32661813 original size:19 final size:20
Alignment explanation
Indices: 32661789--32661834 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
32661779 AAATATATAT
32661789 TATTTTTTA-TTTTAAAATA
1 TATTTTTTATTTTTAAAATA
32661808 TATTTTTTATTTTTAAAATA
1 TATTTTTTATTTTTAAAATA
*
32661828 AATTTTT
1 TATTTTT
32661835 GGTGTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTTTATTTTTAAAATA
Found at i:32661842 original size:20 final size:20
Alignment explanation
Indices: 32661790--32661842 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
32661780 AATATATATT
* *
32661790 ATTTTTTAT-TTTAAAATAT
1 ATTTTTGATGTTTAAAATAA
* *
32661809 ATTTTTTATTTTTAAAATAA
1 ATTTTTGATGTTTAAAATAA
*
32661829 ATTTTTGGTGTTTA
1 ATTTTTGATGTTTA
32661843 TTAAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 9 0.31
20 20 0.69
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTTTGATGTTTAAAATAA
Found at i:32662587 original size:26 final size:25
Alignment explanation
Indices: 32662535--32662602 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
32662525 TGTTTTCTAA
**
32662535 TTTTAAAAATAAAAAGTGAAAGCTATT
1 TTTTAAAAATAAAAA-TGAAAAATA-T
32662562 TTTTAAAAATAAAAAT-ATAAAATAT
1 TTTTAAAAATAAAAATGA-AAAATAT
* *
32662587 TTTCAAAAATCAAAAT
1 TTTTAAAAATAAAAAT
32662603 TTATAGCAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 16 0.44
26 5 0.14
27 15 0.42
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (25 bp):
TTTTAAAAATAAAAATGAAAAATAT
Found at i:32670773 original size:42 final size:42
Alignment explanation
Indices: 32670691--32670931 Score: 229
Period size: 42 Copynumber: 5.7 Consensus size: 42
32670681 TAACATTTAT
* **
32670691 AAACGCCGCTAAAGGTCATGTTC-TTAGCGGTACAACCATAA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
* *
32670732 AAACGCCGCTAAAGGTCAAGTTCATTAGCGGTGCTTCCATAA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
* ** * * * *
32670774 AAACGTCGCTAAAGAACATGATCTTTAGCGGCGCTTTCC-CAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGC-TTCCATAA
* **
32670816 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTT-TTTACA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATA-A
* **
32670858 CAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGTTTTTCC-CGA
1 -AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTG--CTTCCATAA
* *
32670902 AAATGCCCCTAAAGGTCATGTTCTTTAGCG
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCG
32670932 TCATGTTCTT
Statistics
Matches: 163, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
41 25 0.15
42 71 0.44
43 64 0.39
44 1 0.01
45 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
Found at i:32670919 original size:86 final size:83
Alignment explanation
Indices: 32670731--32670931 Score: 242
Period size: 86 Copynumber: 2.4 Consensus size: 83
32670721 TACAACCATA
* * * *
32670731 AAAACGCCGCTAAAGGTCAAGTTCATTAGCGGTGCTTCCATAAAAACGTCGCTAAAGAACATGAT
1 AAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAAAAACGCCGCTAAAGAACATGAT
32670796 CTTTAGCGGCGCTTTCCC
66 CTTTAGCGGCGCTTTCCC
** **
32670814 ACAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTT-TTTACACAAACGCCGCTAAAGGTCAT
1 A-AAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATA-A-AAACGCCGCTAAAGAACAT
* * *
32670878 GTTCTTTAGCGGTGTTTTTCCC
63 GATCTTTAGCGGCG-CTTTCCC
*
32670900 GAAAATGCCCCTAAAGGTCATGTTCTTTAGCG
1 -AAAATGCCGCTAAAGGTCATGTTCTTTAGCG
32670932 TCATGTTCTT
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
83 3 0.03
84 34 0.34
85 28 0.28
86 35 0.35
87 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (83 bp):
AAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAAAAACGCCGCTAAAGAACATGAT
CTTTAGCGGCGCTTTCCC
Found at i:32670936 original size:15 final size:15
Alignment explanation
Indices: 32670916--32670946 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32670906 GCCCCTAAAG
32670916 GTCATGTTCTTTAGC
1 GTCATGTTCTTTAGC
32670931 GTCATGTTCTTTAGC
1 GTCATGTTCTTTAGC
32670946 G
1 G
32670947 GCGCTTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (15 bp):
GTCATGTTCTTTAGC
Found at i:32670987 original size:58 final size:58
Alignment explanation
Indices: 32670873--32670989 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 58
32670863 GCCGCTAAAG
* * * **
32670873 GTCATGTTCTTTAGCGGTGTTTTTCCCGAAAATGCCCCTAAAGGTCATGTTCTTTAGC
1 GTCATGTTCTTTAGCGGCGCTTTTCCCGAAAACGCCCCTAAAGGTCATACTCTTTAGC
* *
32670931 GTCATGTTCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAAATGTCATAACT-TTTAGC
1 GTCATGTTCTTTAGCGGCGCTTTTCCCGA-AAACGCCCCTAAAGGTCAT-ACTCTTTAGC
32670989 G
1 G
32670990 GCACTTTTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 1 0.02
58 48 0.96
59 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (58 bp):
GTCATGTTCTTTAGCGGCGCTTTTCCCGAAAACGCCCCTAAAGGTCATACTCTTTAGC
Found at i:32671384 original size:21 final size:21
Alignment explanation
Indices: 32671360--32671409 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
32671350 TTCTGCTTTG
32671360 CTCTGCTTCCCTCACTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
*
32671381 CTCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
32671402 CTCTGCTT
1 CTCTGCTT
32671410 TAAGTTGCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.02, C:0.50, G:0.16, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCCGC
Found at i:32676848 original size:9 final size:9
Alignment explanation
Indices: 32676831--32677207 Score: 190
Period size: 9 Copynumber: 43.4 Consensus size: 9
32676821 TATGTATTAA
*
32676831 GTAAATTAT
1 GTAAGTTAT
32676840 GTAAGTTAT
1 GTAAGTTAT
32676849 GTACA-TGTA-
1 GTA-AGT-TAT
32676858 -TAAGTTAT
1 GTAAGTTAT
32676866 GTAAGTTAT
1 GTAAGTTAT
*
32676875 GT-A-TTAA
1 GTAAGTTAT
*
32676882 GTAAGCTAT
1 GTAAGTTAT
*
32676891 GTAAGTTGT
1 GTAAGTTAT
32676900 GT-A-TTAT
1 GTAAGTTAT
32676907 GTAAGTTAT
1 GTAAGTTAT
32676916 GTAAGTTAT
1 GTAAGTTAT
** *
32676925 CAAAGTAAT
1 GTAAGTTAT
*
32676934 GTATGTTAT
1 GTAAGTTAT
*
32676943 GTAAGTTGT
1 GTAAGTTAT
*
32676952 GT-AG-AAT
1 GTAAGTTAT
*
32676959 GTAAGCTAT
1 GTAAGTTAT
32676968 GTAAGTTAT
1 GTAAGTTAT
32676977 GTAAGTTAT
1 GTAAGTTAT
**
32676986 GTAAAG-GGT
1 GT-AAGTTAT
*
32676995 GCATAATGTAAT
1 G--TAA-GTTAT
32677007 -TAAGTTAT
1 GTAAGTTAT
32677015 GTAAGTTAT
1 GTAAGTTAT
32677024 G--AGTTAT
1 GTAAGTTAT
32677031 GTAAGTTAT
1 GTAAGTTAT
*
32677040 GT-A-TAAT
1 GTAAGTTAT
*
32677047 GTACGTTAT
1 GTAAGTTAT
* *
32677056 GTATAATATTAA
1 G--TAA-GTTAT
** *
32677068 AAAAATTAT
1 GTAAGTTAT
*
32677077 GTAAGTTGT
1 GTAAGTTAT
*
32677086 GT-A-TAAT
1 GTAAGTTAT
32677093 GTAAGTTAT
1 GTAAGTTAT
*
32677102 GTAAGTAAT
1 GTAAGTTAT
*
32677111 GT--CTTAT
1 GTAAGTTAT
*
32677118 GTAAGTTGT
1 GTAAGTTAT
*
32677127 GT-A-TAAT
1 GTAAGTTAT
*
32677134 GTTAGTTAT
1 GTAAGTTAT
*
32677143 -CAGAGTTAT
1 GTA-AGTTAT
*
32677152 G-CA-TTAT
1 GTAAGTTAT
32677159 GTAAGTTAT
1 GTAAGTTAT
*
32677168 GTAAGTTGT
1 GTAAGTTAT
*
32677177 GTAAGTTGT
1 GTAAGTTAT
*
32677186 TTAAGTTAT
1 GTAAGTTAT
*
32677195 GTAAGTAAT
1 GTAAGTTAT
32677204 GTAA
1 GTAA
32677208 TATATACTTA
Statistics
Matches: 276, Mismatches: 58, Indels: 68
0.69 0.14 0.17
Matches are distributed among these distances:
7 46 0.17
8 22 0.08
9 190 0.69
10 10 0.04
11 4 0.01
12 4 0.01
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.42
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:32676851 original size:25 final size:25
Alignment explanation
Indices: 32676820--32676924 Score: 122
Period size: 25 Copynumber: 4.2 Consensus size: 25
32676810 TGATATATAT
32676820 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* *
32676845 TTATGTA-CATGTATAAGTTATGTAAG
1 TTATGTATTAAGTA-AA-TTATGTAAG
**
32676871 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* * *
32676896 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
32676921 TTAT
1 TTAT
32676925 CAAAGTAATG
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
24 4 0.06
25 42 0.63
26 17 0.25
27 4 0.06
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:32676948 original size:18 final size:18
Alignment explanation
Indices: 32676831--32677207 Score: 190
Period size: 16 Copynumber: 21.7 Consensus size: 18
32676821 TATGTATTAA
*
32676831 GTAAATTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
32676849 GTACA-TGTA--TAAGTTAT
1 GTA-AGT-TATGTAAGTTAT
*
32676866 GTAAGTTATGT-A-TTAA
1 GTAAGTTATGTAAGTTAT
* *
32676882 GTAAGCTATGTAAGTTGT
1 GTAAGTTATGTAAGTTAT
32676900 GT-A-TTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
** *
32676916 GTAAGTTATCAAAGTAAT
1 GTAAGTTATGTAAGTTAT
* *
32676934 GTATGTTATGTAAGTTGT
1 GTAAGTTATGTAAGTTAT
* *
32676952 GT-AG-AATGTAAGCTAT
1 GTAAGTTATGTAAGTTAT
32676968 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
** *
32676986 GTAAAG-GGTGCATAATGTAAT
1 GT-AAGTTATG--TAA-GTTAT
32677007 -TAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
32677024 G--AGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
* *
32677040 GT-A-TAATGTACGTTAT
1 GTAAGTTATGTAAGTTAT
* *** *
32677056 GTATAATATTAAAAAAATTAT
1 G--TAA-GTTATGTAAGTTAT
* *
32677077 GTAAGTTGTGT-A-TAAT
1 GTAAGTTATGTAAGTTAT
*
32677093 GTAAGTTATGTAAGTAAT
1 GTAAGTTATGTAAGTTAT
* *
32677111 GT--CTTATGTAAGTTGT
1 GTAAGTTATGTAAGTTAT
* *
32677127 GT-A-TAATGTTAGTTAT
1 GTAAGTTATGTAAGTTAT
* *
32677143 -CAGAGTTATG-CA-TTAT
1 GTA-AGTTATGTAAGTTAT
*
32677159 GTAAGTTATGTAAGTTGT
1 GTAAGTTATGTAAGTTAT
* *
32677177 GTAAGTTGTTTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
32677195 GTAAGTAATGTAA
1 GTAAGTTATGTAA
32677208 TATATACTTA
Statistics
Matches: 268, Mismatches: 59, Indels: 64
0.69 0.15 0.16
Matches are distributed among these distances:
16 115 0.43
17 30 0.11
18 92 0.34
19 13 0.05
20 6 0.02
21 12 0.04
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.42
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:32676968 original size:25 final size:25
Alignment explanation
Indices: 32676831--32676979 Score: 131
Period size: 25 Copynumber: 5.8 Consensus size: 25
32676821 TATGTATTAA
* *
32676831 GTAAATTATGTAAGTTATGTA-CAT
1 GTAAGTTATGTAAGTTATGTAGAAT
*
32676855 GTATAAGTTATGTAAGTTATGTATTAA-
1 G--TAAGTTATGTAAGTTATGTA-GAAT
* * **
32676882 GTAAGCTATGTAAGTTGTGTATTAT
1 GTAAGTTATGTAAGTTATGTAGAAT
**
32676907 GTAAGTTATGTAAGTTATCAAAGTAAT
1 GTAAGTTATGTAAGTTAT-GTAG-AAT
* *
32676934 GTATGTTATGTAAGTTGTGTAGAAT
1 GTAAGTTATGTAAGTTATGTAGAAT
*
32676959 GTAAGCTATGTAAGTTATGTA
1 GTAAGTTATGTAAGTTATGTA
32676980 AGTTATGTAA
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
24 3 0.03
25 55 0.55
26 22 0.22
27 19 0.19
28 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (25 bp):
GTAAGTTATGTAAGTTATGTAGAAT
Found at i:32676988 original size:52 final size:51
Alignment explanation
Indices: 32676831--32677042 Score: 172
Period size: 52 Copynumber: 4.2 Consensus size: 51
32676821 TATGTATTAA
* * * *
32676831 GTAAATTATGTAAGTTATGTACATGTATAAGTTATGTAAGTTATGT-A-TTAA
1 GTAAGTTATGTAAGTTGTGTAAATG--TAAGTTATGTAAGTTATGTAAGTTAT
* * ** *
32676882 GTAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAAT
1 GTAAGTTATGTAAGTTGTGTA-AATGTAAGTTATGTAAGTTATGTAAGTTAT
* *
32676934 GTATGTTATGTAAGTTGTGTAGAATGTAAGCTATGTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTGTGTA-AATGTAAGTTATGTAAGTTATGTAAGTTAT
** * **
32676986 GTAAAG-GGTG-CA-TAATGT-AAT-TAAGTTATGTAAGTTATG--AGTTAT
1 GT-AAGTTATGTAAGTTGTGTAAATGTAAGTTATGTAAGTTATGTAAGTTAT
32677031 GTAAGTTATGTA
1 GTAAGTTATGTA
32677043 TAATGTACGT
Statistics
Matches: 129, Mismatches: 26, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
44 3 0.02
45 10 0.08
47 17 0.13
48 3 0.02
50 21 0.16
51 20 0.16
52 53 0.41
53 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.22, T:0.41
Consensus pattern (51 bp):
GTAAGTTATGTAAGTTGTGTAAATGTAAGTTATGTAAGTTATGTAAGTTAT
Found at i:32677119 original size:25 final size:25
Alignment explanation
Indices: 32677073--32677129 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
32677063 ATTAAAAAAA
**
32677073 TTATGTAAGTTGTGTATAATGTAAG
1 TTATGTAAGTAATGTATAATGTAAG
* *
32677098 TTATGTAAGTAATGTCTTATGTAAG
1 TTATGTAAGTAATGTATAATGTAAG
*
32677123 TTGTGTA
1 TTATGTA
32677130 TAATGTTAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTAATGTATAATGTAAG
Found at i:32677142 original size:25 final size:25
Alignment explanation
Indices: 32677114--32677179 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
32677104 AAGTAATGTC
*
32677114 TTATGTAAGTTGTGTATAATGTTAG
1 TTATGTAAGTTGTGTATAATGTAAG
* * * *
32677139 TTAT-CAGAGTTATGCATTATGTAAG
1 TTATGTA-AGTTGTGTATAATGTAAG
32677164 TTATGTAAGTTGTGTA
1 TTATGTAAGTTGTGTA
32677180 AGTTGTTTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
24 1 0.03
25 29 0.94
26 1 0.03
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (25 bp):
TTATGTAAGTTGTGTATAATGTAAG
Found at i:32677159 original size:41 final size:42
Alignment explanation
Indices: 32676914--32677170 Score: 134
Period size: 41 Copynumber: 6.0 Consensus size: 42
32676904 TATGTAAGTT
*
32676914 ATGTAAGTTAT-CAAAGTAATGT-ATGTTATGTAAGTTGTGTAGA
1 ATGTAAGTTATGC-AAGTAATGTCA--TTATGTAAGTTGTGTATA
* * * * * *
32676957 ATGTAAGCTATGTAAGTTATGTAAGTTATGTAAAG-GGTGCATA
1 ATGTAAGTTATGCAAGTAATGTCA-TTATGT-AAGTTGTGTATA
* * *
32677000 ATGTAATTAAGTTATGTAAGTTATG--AGTTATGTAAGTTATGTATA
1 ATG----TAAGTTATGCAAGTAATGTCA-TTATGTAAGTTGTGTATA
* * * ****
32677045 ATGTACGTTATGTATAATATTAAAAAAATTATGTAAGTTGTGTATA
1 ATGTAAGTTATG---CA-AGTAATGTCATTATGTAAGTTGTGTATA
*
32677091 ATGTAAGTTATGTAAGTAATGTC-TTATGTAAGTTGTGTATA
1 ATGTAAGTTATGCAAGTAATGTCATTATGTAAGTTGTGTATA
* * *
32677132 ATGTTAGTTAT-CAGAGTTATG-CATTATGTAAGTTATGTA
1 ATGTAAGTTATGCA-AGTAATGTCATTATGTAAGTTGTGTA
32677171 AGTTGTGTAA
Statistics
Matches: 170, Mismatches: 28, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
40 2 0.01
41 57 0.34
42 4 0.02
43 34 0.20
44 8 0.05
45 19 0.11
46 28 0.16
47 18 0.11
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (42 bp):
ATGTAAGTTATGCAAGTAATGTCATTATGTAAGTTGTGTATA
Found at i:32677285 original size:13 final size:13
Alignment explanation
Indices: 32677267--32677325 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
32677257 CAAATTTTAG
*
32677267 TAAGTAATGTATT
1 TAAGTAATATATT
*
32677280 TAAGTAATTTATT
1 TAAGTAATATATT
32677293 TAAGTAATATATT
1 TAAGTAATATATT
*
32677306 CAAGTAATATATT
1 TAAGTAATATATT
*
32677319 AAAGTAA
1 TAAGTAA
32677326 ATTTTAGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:32677464 original size:53 final size:53
Alignment explanation
Indices: 32677363--32677465 Score: 124
Period size: 52 Copynumber: 1.9 Consensus size: 53
32677353 GTAATGAAAA
*
32677363 ATATACTTAAAAATATATATTTAAGTAATGTAAGATATAAATTTTAAAAAATT
1 ATATACTTAAAAATATATATTTAAGTAATGTAAGATATAAATTGTAAAAAATT
*
32677416 ATATA-TTAACAATATATATATT-AGTAATAAGTTAA-AT-TAAATTGTAAAAA
1 ATATACTTAAAAATATATAT-TTAAGTAAT--G-TAAGATATAAATTGTAAAAA
32677466 TATATTAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
52 19 0.43
53 19 0.43
54 3 0.07
55 3 0.07
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (53 bp):
ATATACTTAAAAATATATATTTAAGTAATGTAAGATATAAATTGTAAAAAATT
Found at i:32678756 original size:13 final size:13
Alignment explanation
Indices: 32678740--32678780 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32678730 CATTTACTAT
32678740 ATTCATTAAGAAA
1 ATTCATTAAGAAA
32678753 ATTCATTCAA-AAA
1 ATTCATT-AAGAAA
*
32678766 ATTCATTTAGAAA
1 ATTCATTAAGAAA
32678779 AT
1 AT
32678781 CTCGCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.88
14 2 0.08
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (13 bp):
ATTCATTAAGAAA
Found at i:32678911 original size:60 final size:60
Alignment explanation
Indices: 32678821--32678944 Score: 214
Period size: 60 Copynumber: 2.1 Consensus size: 60
32678811 CACAAAATTC
* *
32678821 ATTC-GGGCAACTGCTAAATAAACAATTTATACCTAAATCCCTCATACACTGTAACCAAA
1 ATTCAGGGCAACTGCTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
*
32678880 ATTCAGGGCAACTGCTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCGAA
1 ATTCAGGGCAACTGCTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
32678940 ATTCA
1 ATTCA
32678945 CAAAATTCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
59 4 0.07
60 57 0.93
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (60 bp):
ATTCAGGGCAACTGCTAAATAAACAAATTATACCTAAATCCCTCACACACTGTAACCAAA
Found at i:32682514 original size:44 final size:45
Alignment explanation
Indices: 32682462--32682659 Score: 116
Period size: 45 Copynumber: 4.2 Consensus size: 45
32682452 TATTGTTATT
32682462 AAATTTTAATAAGATTATTAATATAAAT-AATAAATAATTTAATC
1 AAATTTTAATAAGATTATTAATATAAATAAATAAATAATTTAATC
* * * *
32682506 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATA
1 AAATTTT-A-ATAA-GATTATT-AATATA----AA-T-AAATAAATAATTTAATC
* * * * * ** * * *
32682561 AAATTCTTAATAATCAATATT-GT-TATATGAATTTATTATTGTTATT
1 AAATT-TTAATAA-GATTATTAATATAAATAAATAAATAATT-TAATC
32682607 AAATTTTAATAAGATTATTAATATAAAT-AATAAATAATTTAATC
1 AAATTTTAATAAGATTATTAATATAAATAAATAAATAATTTAATC
*
32682651 ATATTTTAA
1 AAATTTTAA
32682660 CATAATTATT
Statistics
Matches: 115, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
44 22 0.19
45 26 0.23
46 17 0.15
47 7 0.06
48 6 0.05
51 2 0.02
52 3 0.03
53 1 0.01
54 10 0.09
55 19 0.17
56 2 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (45 bp):
AAATTTTAATAAGATTATTAATATAAATAAATAAATAATTTAATC
Found at i:32682551 original size:18 final size:17
Alignment explanation
Indices: 32682530--32682564 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32682520 TTATTATTAA
*
32682530 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32682548 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32682565 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32682672 original size:75 final size:75
Alignment explanation
Indices: 32682444--32682673 Score: 241
Period size: 75 Copynumber: 3.1 Consensus size: 75
32682434 TTAAAATATG
*
32682444 ATTATTGTTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATA
1 ATTATTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATA
32682509 TTTTAACATA
66 TTTTAACATA
* * * * **
32682519 ATTATTATTA-----AATATATTTTAATTAA-AATATATAAT-TTAAT-A-AAATTCTTAATAAT
1 ATTATTATTATTGTTATTAAATTTTAA-TAAGATTAT-TAATATAAATAATAAATAATT--TAAT
*
32682575 CAATATTGTT-ATATGA
62 C-ATATT-TTAACAT-A
32682591 A-T-TTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATA
1 ATTATTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATA
32682654 TTTTAACATA
66 TTTTAACATA
32682664 ATTATTATTA
1 ATTATTATTA
32682674 AATATAATTT
Statistics
Matches: 121, Mismatches: 15, Indels: 38
0.70 0.09 0.22
Matches are distributed among these distances:
68 6 0.05
69 1 0.01
70 29 0.24
71 16 0.13
72 4 0.03
73 4 0.03
74 16 0.13
75 38 0.31
76 1 0.01
77 6 0.05
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (75 bp):
ATTATTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAATTTAATCATA
TTTTAACATA
Found at i:32682684 original size:26 final size:26
Alignment explanation
Indices: 32682655--32682769 Score: 95
Period size: 26 Copynumber: 4.3 Consensus size: 26
32682645 TTAATCATAT
*
32682655 TTTAACATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
* * * * *
32682681 TTTAATAAAATATATAAATTTACTAAAA
1 TTTAATATAAT-TAT-TATTAAATATAA
* * * *
32682709 TCATAATATATAATACTATAAAATATAA
1 T-TTAATATA-ATTATTATTAAATATAA
*
32682737 TTTAAAATAATTATTATTAAATATAA
1 TTTAATATAATTATTATTAAATATAA
32682763 TTTAATA
1 TTTAATA
32682770 AAATATATAA
Statistics
Matches: 64, Mismatches: 21, Indels: 8
0.69 0.23 0.09
Matches are distributed among these distances:
26 29 0.45
27 9 0.14
28 17 0.27
29 8 0.12
30 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (26 bp):
TTTAATATAATTATTATTAAATATAA
Found at i:32682702 original size:18 final size:17
Alignment explanation
Indices: 32682675--32682790 Score: 66
Period size: 17 Copynumber: 7.0 Consensus size: 17
32682665 TTATTATTAA
32682675 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
32682692 ATATAAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * *
32682710 -CATAATAT-ATAATACT
1 ATATAATTTAATAA-AAT
* *
32682726 ATAAAATATAATTTAAAAT
1 ATATAATTTAA--TAAAAT
* *
32682745 A-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
32682757 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
32682774 ATATAATTTGATAAAAT
1 ATATAATTTAATAAAAT
32682791 TCTTAGTATT
Statistics
Matches: 73, Mismatches: 15, Indels: 22
0.66 0.14 0.20
Matches are distributed among these distances:
12 1 0.01
13 5 0.07
14 3 0.04
15 5 0.07
16 9 0.12
17 29 0.40
18 15 0.21
19 3 0.04
20 3 0.04
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32682739 original size:145 final size:145
Alignment explanation
Indices: 32682434--32682740 Score: 469
Period size: 145 Copynumber: 2.1 Consensus size: 145
32682424 GTAGAGTAAG
* *
32682434 TTAAAATATGATTATTGTTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAA
1 TTAAAATATGAAT-TTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAA
*
32682499 TTTAATCATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAA
65 TTTAATCATATTTTAACATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAA
*
32682564 TTCTTAATAATCAATA
130 TTCATAATAATCAATA
***
32682580 TTGTTATATGAATTTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAAT
1 TTAAAATATGAATTTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAAT
*
32682645 TTAATCATATTTTAACATAATTATTATTAAATATAATTTAA-TAAAATATATAAATTTACTAAAA
66 TTAATCATATTTTAACATAATTATTATTAAATATAATTTAATTAAAATATAT-AATTTAATAAAA
32682709 -TCATAATATAT-AATA
130 TTCATAATA-ATCAATA
32682724 CTATAAAATAT-AATTTA
1 -T-TAAAATATGAATTTA
32682741 AAATAATTAT
Statistics
Matches: 146, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
144 21 0.14
145 111 0.76
146 14 0.10
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (145 bp):
TTAAAATATGAATTTATTATTGTTATTAAATTTTAATAAGATTATTAATATAAATAATAAATAAT
TTAATCATATTTTAACATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAAT
TCATAATAATCAATA
Found at i:32684564 original size:21 final size:20
Alignment explanation
Indices: 32684540--32684578 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
32684530 GTTAAAAATA
32684540 ATTATCATTTTCATCATTTGG
1 ATTATCATTTTCAT-ATTTGG
32684561 ATTATCATTTTCATATTT
1 ATTATCATTTTCATATTT
32684579 TAATCCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (20 bp):
ATTATCATTTTCATATTTGG
Found at i:32686258 original size:21 final size:21
Alignment explanation
Indices: 32686219--32686258 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32686209 CTTAAATTTT
* *
32686219 AAAATCTTAAAAAGCAAAAAA
1 AAAATCCTAAAAAGAAAAAAA
*
32686240 AAAATCCTAAAAATAAAAA
1 AAAATCCTAAAAAGAAAAA
32686259 CACATGAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.72, C:0.10, G:0.03, T:0.15
Consensus pattern (21 bp):
AAAATCCTAAAAAGAAAAAAA
Found at i:32687765 original size:22 final size:22
Alignment explanation
Indices: 32687739--32687808 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
32687729 ACCGATCTAA
*
32687739 TTTTAAAGATTTAATAGAACAT
1 TTTTAAAGATTTAACAGAACAT
* *
32687761 TTTTAGAAG--TTAACA-ATCTAA
1 TTTTA-AAGATTTAACAGAAC-AT
32687782 TTTTAAAGATTTAACAGAACAT
1 TTTTAAAGATTTAACAGAACAT
32687804 TTTTA
1 TTTTA
32687809 GAAGTTAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 5 0.13
21 11 0.29
22 17 0.45
23 5 0.13
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (22 bp):
TTTTAAAGATTTAACAGAACAT
Found at i:32687773 original size:21 final size:21
Alignment explanation
Indices: 32687749--32687818 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
32687739 TTTTAAAGAT
*
32687749 TTAATAGAACATTTTTAGAAG
1 TTAACAGAACATTTTTAGAAG
* *
32687770 TTAACA-ATCTAATTTTA-AAG
1 TTAACAGAAC-ATTTTTAGAAG
32687790 ATTTAACAGAACATTTTTAGAAG
1 --TTAACAGAACATTTTTAGAAG
32687813 TTAACA
1 TTAACA
32687819 TTTTGTTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 5 0.13
21 17 0.44
22 12 0.31
23 5 0.13
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (21 bp):
TTAACAGAACATTTTTAGAAG
Found at i:32687781 original size:43 final size:43
Alignment explanation
Indices: 32687733--32687818 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
32687723 TTTATCACCG
*
32687733 ATCTAATTTTAAAGATTTAATAGAACATTTTTAGAAGTTAACA
1 ATCTAATTTTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
32687776 ATCTAATTTTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
1 ATCTAATTTTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
32687819 TTTTGTTTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.38
Consensus pattern (43 bp):
ATCTAATTTTAAAGATTTAACAGAACATTTTTAGAAGTTAACA
Found at i:32688487 original size:23 final size:23
Alignment explanation
Indices: 32688454--32688501 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
32688444 TTTTTGATGT
* *
32688454 ATTATATATATAT-ATTTAAA-A
1 ATTATATAAATATAATATAAAGA
32688475 ATTATATAAATATAATATAAAGA
1 ATTATATAAATATAATATAAAGA
32688498 ATTA
1 ATTA
32688502 ATACGGGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 12 0.52
22 6 0.26
23 5 0.22
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
ATTATATAAATATAATATAAAGA
Found at i:32688848 original size:19 final size:19
Alignment explanation
Indices: 32688824--32688889 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 19
32688814 AAATTAATAA
32688824 ATAATAATATTTTAAAATT
1 ATAATAATATTTTAAAATT
* *
32688843 ATAAT-ATGTTTTTAAATT
1 ATAATAATATTTTAAAATT
32688861 AATACA-ATATATTCTTAAAATT
1 -ATA-ATA-ATATT-TTAAAATT
32688883 ATAATAA
1 ATAATAA
32688890 CTAGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
18 11 0.30
19 8 0.22
20 3 0.08
21 8 0.22
22 7 0.19
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATATTTTAAAATT
Found at i:32689409 original size:20 final size:20
Alignment explanation
Indices: 32689384--32689446 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
32689374 TTATAAAACA
32689384 AAAATATGAGATAGGTAATT
1 AAAATATGAGATAGGTAATT
* * **
32689404 AAAATA--ATTATA--AAACA
1 AAAATATGA-GATAGGTAATT
32689421 AAAATATGAGATAGGTAATT
1 AAAATATGAGATAGGTAATT
32689441 AAAATA
1 AAAATA
32689447 AAATTGTCAG
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 8 0.27
18 4 0.13
19 4 0.13
20 14 0.47
ACGTcount: A:0.59, C:0.02, G:0.13, T:0.27
Consensus pattern (20 bp):
AAAATATGAGATAGGTAATT
Done.