Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 115 of 199
Found at i:32689422 original size:37 final size:37
Alignment explanation
Indices: 32689372--32689447 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
32689362 TGTTATAAAC
32689372 AATTATAAAACAAAAATATGAGATAGGTAATTAAAAT
1 AATTATAAAACAAAAATATGAGATAGGTAATTAAAAT
32689409 AATTATAAAACAAAAATATGAGATAGGTAATTAAAAT
1 AATTATAAAACAAAAATATGAGATAGGTAATTAAAAT
32689446 AA
1 AA
32689448 AATTGTCAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.26
Consensus pattern (37 bp):
AATTATAAAACAAAAATATGAGATAGGTAATTAAAAT
Found at i:32690957 original size:16 final size:17
Alignment explanation
Indices: 32690936--32690967 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32690926 CAACATTAGA
32690936 GAATAAAA-AGTTGGAT
1 GAATAAAATAGTTGGAT
32690952 GAATAAAATAGTTGGA
1 GAATAAAATAGTTGGA
32690968 ATGATTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (17 bp):
GAATAAAATAGTTGGAT
Found at i:32694462 original size:22 final size:22
Alignment explanation
Indices: 32694418--32694459 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32694408 CATTTCATTT
*
32694418 TTCTATTATTCTCTCTTGTTTA
1 TTCTATAATTCTCTCTTGTTTA
32694440 TTCTATAATTCTCT-TTGTTT
1 TTCTATAATTCTCTCTTGTTT
32694460 TATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.14, C:0.17, G:0.05, T:0.64
Consensus pattern (22 bp):
TTCTATAATTCTCTCTTGTTTA
Found at i:32694494 original size:18 final size:17
Alignment explanation
Indices: 32694459--32694524 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 17
32694449 TCTCTTTGTT
32694459 TTATAATAATTTTAAAA
1 TTATAATAATTTTAAAA
* *
32694476 TTATAATATGTTTTTAAA
1 TTATAATA-ATTTTAAAA
*
32694494 TTAATACAATATAATCTTAAAA
1 TT-AT---A-ATAATTTTAAAA
32694516 TTATAATAA
1 TTATAATAA
32694525 CTAGATTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
17 12 0.32
18 10 0.26
19 2 0.05
21 2 0.05
22 9 0.24
23 3 0.08
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (17 bp):
TTATAATAATTTTAAAA
Found at i:32694682 original size:15 final size:17
Alignment explanation
Indices: 32694650--32694682 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32694640 ATATATTCAA
32694650 ATGAAATACAATAAACT
1 ATGAAATACAATAAACT
32694667 ATGAAAT-CAA-AAACT
1 ATGAAATACAATAAACT
32694682 A
1 A
32694683 AAATAATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (17 bp):
ATGAAATACAATAAACT
Found at i:32697650 original size:17 final size:16
Alignment explanation
Indices: 32697630--32697691 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 16
32697620 CCGTATAATT
32697630 ATATAAATTATATAAAA
1 ATATAAATTATA-AAAA
*
32697647 ATATTTAATTATAAAAA
1 ATA-TAAATTATAAAAA
*
32697664 TATAAAAATTATAAAATA
1 -ATATAAATTATAAAA-A
*
32697682 ATTTAAATTA
1 ATATAAATTA
32697692 AAACATGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 25 0.68
18 12 0.32
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAAATTATAAAAA
Found at i:32697928 original size:24 final size:25
Alignment explanation
Indices: 32697896--32697946 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
32697886 GTGAAATTAC
* *
32697896 AAAATTAAATTATTTCCATGTTCAA
1 AAAATAAAATTATTTCCATATTCAA
* *
32697921 AAAATAAAATTCTTTCCTTATTCAA
1 AAAATAAAATTATTTCCATATTCAA
32697946 A
1 A
32697947 TGCTTAACGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (25 bp):
AAAATAAAATTATTTCCATATTCAA
Found at i:32703556 original size:30 final size:30
Alignment explanation
Indices: 32703507--32703583 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 30
32703497 TATACTAAAT
*
32703507 ATAATAATAAAATAATAATAATATCTCATTAAA
1 ATAATAATAAAATAAT-AT-ATATCTAATT-AA
* *
32703540 ATACTAATAAAATAATATTTATCTAATTAA
1 ATAATAATAAAATAATATATATCTAATTAA
*
32703570 ATAATCATAAAATA
1 ATAATAATAAAATA
32703584 TTAAAATATC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 14 0.36
31 8 0.21
32 2 0.05
33 15 0.38
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (30 bp):
ATAATAATAAAATAATATATATCTAATTAA
Found at i:32711057 original size:9 final size:10
Alignment explanation
Indices: 32711034--32711058 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32711024 CCATAATTAT
32711034 TTTTTTATAA
1 TTTTTTATAA
32711044 TTTTTTATAA
1 TTTTTTATAA
32711054 TTTTT
1 TTTTT
32711059 CAAAGTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:32711401 original size:23 final size:22
Alignment explanation
Indices: 32711358--32711401 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
32711348 TTGTAAGTCG
32711358 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
32711381 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
32711402 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:32711511 original size:45 final size:45
Alignment explanation
Indices: 32711447--32711539 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 45
32711437 ACAGATACTT
* * *
32711447 GGTGGATTTAGCATATAGCAACCACCTCATTAATCAATGATGTCC
1 GGTGGAATTAGCACATAGCAACCACCTCACTAATCAATGATGTCC
* * *
32711492 GGTGGAATTAGCACATAGCAACCACTTTACTAATCAATGATGTTC
1 GGTGGAATTAGCACATAGCAACCACCTCACTAATCAATGATGTCC
32711537 GGT
1 GGT
32711540 TCACATAGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (45 bp):
GGTGGAATTAGCACATAGCAACCACCTCACTAATCAATGATGTCC
Found at i:32711603 original size:51 final size:50
Alignment explanation
Indices: 32711545--32711731 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 50
32711535 TCGGTTCACA
* *
32711545 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATAACTATCCG-TACACG
* * * ** *
32711596 TAGTAGCCTGCACATAGTACTACACCCGTGATCGA-AACTATTCGGTATGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATAACTA-TCCGTACACG
* * * * *
32711647 TAGTAGCCTGCACATCGTACTACACATGCGACC-TATC-ATTCCTGCACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATAACTA-TCC-GTACACG
32711697 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
32711732 CACTTTCACT
Statistics
Matches: 109, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
49 4 0.04
50 36 0.33
51 64 0.59
52 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATAACTATCCGTACACG
Found at i:32711727 original size:101 final size:102
Alignment explanation
Indices: 32711543--32711727 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 102
32711533 GTTCGGTTCA
* * *
32711543 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGACACACGTAGTAGCCTGCA
*
32711608 CATAGTACTACACCCGTGATCGAAACTATTCGGTATG
66 CATAGTACTACACACGTGATCGAAACTATTCGGTATG
*
32711645 CATAGTAGCCTGCACATCGTACTACACATGCGACCTATCA-T-TCCTG-CACACGTAGTAGCCTG
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCC-GACACACGTAGTAGCCTG
32711707 CACATAGTACTACACACGTGA
64 CACATAGTACTACACACGTGA
32711728 CCATCACTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 38 0.50
102 35 0.46
103 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGACACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATTCGGTATG
Found at i:32716604 original size:39 final size:39
Alignment explanation
Indices: 32716539--32716633 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 39
32716529 ATGATTTTTC
* ** *
32716539 GAGTATTGTGACATATTCTTTAATGTTATGTGATTATAT
1 GAGTATTGTGATATATGATTTAATGTTAGGTGATTATAT
32716578 GAGTATTGTGATATATGATTGT-ATGTTAGGTGATTATAT
1 GAGTATTGTGATATATGATT-TAATGTTAGGTGATTATAT
* *
32716617 -ATGTAATATGATATATG
1 GA-GTATTGTGATATATG
32716634 CTTGATAGCG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.02
39 46 0.96
40 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (39 bp):
GAGTATTGTGATATATGATTTAATGTTAGGTGATTATAT
Found at i:32717203 original size:223 final size:223
Alignment explanation
Indices: 32716808--32717253 Score: 736
Period size: 223 Copynumber: 2.0 Consensus size: 223
32716798 TTAAAGCTCA
* * * *
32716808 CCTACTTCCTTCTTAAACTTTGTAGATTAGTTGTGTGCAGTATGATCTGTGTGGCTTTCTGAAGG
1 CCTACTCCCTTCTTAAACTTTGCAGATTAATTGTGTGCAGTATGATCTATGTGGCTTTCTGAAGG
32716873 GTGATCCAAGGAAGTACATTTTCGTTATCCGTAGGTGTTTATTATTTGGTTATGTTTGGGGAATA
66 GTGATCCAAGGAAGTACATTTTCGTTATCCGTAGGTGTTTATTATTTGGTTATGTTTGGGGAATA
* * * *
32716938 AGGCAATGTGGTAGTCTTTGTGCTAATATTTGATATGATATTTCGAGTTGTTTCCATGATTTAAT
131 AGGAAATGTGGTAGTCTTTGTGCTAATATTGGATATGATATTTCGAGTTGTCTCCATGAGTTAAT
32717003 TGTTATTAGGATTTTGAGATTTGTTTCG
196 TGTTATTAGGATTTTGAGATTTGTTTCG
*
32717031 CCTACTCCCTTCTTAAACTTTGCAGATTAATTGTGTGCTAGTGTGAGT-TATGTGGCTTTCT-AA
1 CCTACTCCCTTCTTAAACTTTGCAGATTAATTGTGTGC-AGTATGA-TCTATGTGGCTTTCTGAA
*
32717094 GGGGTGATCCAAGGAAGTACATTTTCGTTATTCGTAGGTGTTTATTATTTGGTTATGTTT-GGGA
64 -GGGTGATCCAAGGAAGTACATTTTCGTTATCCGTAGGTGTTTATTATTTGGTTATGTTTGGGGA
* *
32717158 ATAAGGAAATGTGGTAGTCTTTGTGCTAATATTGGATATGATATTTTGTGTTGTCTCCATGAGTT
128 ATAAGGAAATGTGGTAGTCTTTGTGCTAATATTGGATATGATATTTCGAGTTGTCTCCATGAGTT
32717223 AATTGTTATTAGGATTTTGAGATTTGTTTCG
193 AATTGTTATTAGGATTTTGAGATTTGTTTCG
32717254 TAACATGATG
Statistics
Matches: 208, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
223 131 0.63
224 76 0.37
225 1 0.00
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.44
Consensus pattern (223 bp):
CCTACTCCCTTCTTAAACTTTGCAGATTAATTGTGTGCAGTATGATCTATGTGGCTTTCTGAAGG
GTGATCCAAGGAAGTACATTTTCGTTATCCGTAGGTGTTTATTATTTGGTTATGTTTGGGGAATA
AGGAAATGTGGTAGTCTTTGTGCTAATATTGGATATGATATTTCGAGTTGTCTCCATGAGTTAAT
TGTTATTAGGATTTTGAGATTTGTTTCG
Found at i:32723068 original size:17 final size:17
Alignment explanation
Indices: 32723020--32723072 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
32723010 TGTCCTCAAG
32723020 CAAACTAAA-TG-AAAA
1 CAAACTAAACTGAAAAA
*
32723035 CAAAATAAAAACT-AAAAA
1 CAAACT--AAACTGAAAAA
32723053 CAAACTAAACTGAAAAA
1 CAAACTAAACTGAAAAA
32723070 CAA
1 CAA
32723073 GAAATAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 11 0.35
18 10 0.32
ACGTcount: A:0.70, C:0.15, G:0.04, T:0.11
Consensus pattern (17 bp):
CAAACTAAACTGAAAAA
Found at i:32732882 original size:16 final size:16
Alignment explanation
Indices: 32732849--32732882 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32732839 TGGCACTGTT
* *
32732849 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
32732865 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
32732881 AA
1 AA
32732883 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:32735709 original size:21 final size:21
Alignment explanation
Indices: 32735683--32735723 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32735673 AGACGAGCAA
* *
32735683 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
32735704 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
32735724 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:32741334 original size:19 final size:19
Alignment explanation
Indices: 32741299--32741357 Score: 68
Period size: 18 Copynumber: 3.1 Consensus size: 19
32741289 TTTTAGATAA
*
32741299 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
32741317 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
32741335 TAAAAATTATTTTGAATTATT
1 TATAAA-TATTTTGAATT-TT
32741356 TA
1 TA
32741358 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 15 0.43
19 15 0.43
20 1 0.03
21 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:32759247 original size:11 final size:11
Alignment explanation
Indices: 32759231--32759273 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
32759221 TCCACTATTG
32759231 TTTAGAATTTT
1 TTTAGAATTTT
32759242 TTTAGAATTTT
1 TTTAGAATTTT
32759253 TTT-GAATATTT
1 TTTAGAAT-TTT
*
32759264 TGTAG-ATTTT
1 TTTAGAATTTT
32759274 AAATTATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 7 0.24
11 21 0.72
12 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.63
Consensus pattern (11 bp):
TTTAGAATTTT
Found at i:32759650 original size:19 final size:18
Alignment explanation
Indices: 32759606--32759647 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
32759596 TCAAAAAATA
* *
32759606 ATTTTTAAAAATTATATT
1 ATTTTTAAAAATGATAAT
*
32759624 ATTTTTAAAAATGCTAAT
1 ATTTTTAAAAATGATAAT
32759642 ATTTTT
1 ATTTTT
32759648 TAATATTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTTTAAAAATGATAAT
Found at i:32760127 original size:19 final size:20
Alignment explanation
Indices: 32760086--32760151 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 20
32760076 TATTTTTCAA
* *
32760086 TAAAATATTAAAAATATCATT
1 TAAAATATTAAAATTAT-TTT
32760107 TAAAAT-TTAAAATTATTTT
1 TAAAATATTAAAATTATTTT
* *
32760126 T--AATGTTAAAATTTATTAT
1 TAAAATATTAAAA-TTATTTT
32760145 TAAAATA
1 TAAAATA
32760152 AAATTGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.08
18 6 0.16
19 10 0.27
20 9 0.24
21 9 0.24
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TAAAATATTAAAATTATTTT
Found at i:32760153 original size:18 final size:19
Alignment explanation
Indices: 32760132--32760167 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32760122 TTTTTAATGT
*
32760132 TAAAATT-TATTATTAAAA
1 TAAAATTGTAATATTAAAA
32760150 TAAAATTGTAATATTAAA
1 TAAAATTGTAATATTAAA
32760168 TAATTTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TAAAATTGTAATATTAAAA
Found at i:32773334 original size:38 final size:40
Alignment explanation
Indices: 32773291--32773370 Score: 105
Period size: 39 Copynumber: 2.0 Consensus size: 40
32773281 CAAAAATTAA
32773291 AAAATT-AAAATAATTT-TAAAAAGTT-CAAAA-TATTTTTT
1 AAAATTAAAAAT-ATTTATAAAAA-TTCCAAAATTATTTTTT
32773329 AAAATTAAAAATATTTATAAAAATTCCAAAATTTATTTTTT
1 AAAATTAAAAATATTTATAAAAATTCCAAAA-TTATTTTTT
32773370 A
1 A
32773371 GAAAATTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
38 12 0.32
39 16 0.43
41 9 0.24
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (40 bp):
AAAATTAAAAATATTTATAAAAATTCCAAAATTATTTTTT
Found at i:32773352 original size:19 final size:17
Alignment explanation
Indices: 32773290--32773353 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 17
32773280 ACAAAAATTA
32773290 AAAAATTAAAATAATTTT
1 AAAAATTAAAAT-ATTTT
32773308 AAAAAGTTCAAAATATTTTT
1 AAAAA-TT-AAAATA-TTTT
*
32773328 TAAAATTAAAAATATTTAT
1 AAAAATT-AAAATATTT-T
32773347 AAAAATT
1 AAAAATT
32773354 CCAAAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 8 0.21
19 18 0.46
20 13 0.33
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAAATTAAAATATTTT
Found at i:32775803 original size:17 final size:17
Alignment explanation
Indices: 32775783--32775822 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
32775773 AGAAGAGAAA
*
32775783 GAAAAGAGAGAGCGAAG
1 GAAAAGAGAAAGCGAAG
*
32775800 GAAAAGAGAAAGGGAAG
1 GAAAAGAGAAAGCGAAG
*
32775817 AAAAAG
1 GAAAAG
32775823 GGATTTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.60, C:0.03, G:0.38, T:0.00
Consensus pattern (17 bp):
GAAAAGAGAAAGCGAAG
Found at i:32776015 original size:21 final size:21
Alignment explanation
Indices: 32775988--32776039 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
32775978 GTTATAAATG
32775988 TTATTTTTTATGTTATTTTAT
1 TTATTTTTTATGTTATTTTAT
* ** * *
32776009 TTGTTTTAGATTTTATTTTTT
1 TTATTTTTTATGTTATTTTAT
32776030 TTATTTTTTA
1 TTATTTTTTA
32776040 AGGTATTATT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (21 bp):
TTATTTTTTATGTTATTTTAT
Found at i:32776023 original size:16 final size:16
Alignment explanation
Indices: 32776002--32776032 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32775992 TTTTTATGTT
32776002 ATTTTATTTGTTTTAG
1 ATTTTATTTGTTTTAG
*
32776018 ATTTTATTTTTTTTA
1 ATTTTATTTGTTTTA
32776033 TTTTTTAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
ATTTTATTTGTTTTAG
Found at i:32776038 original size:16 final size:16
Alignment explanation
Indices: 32775988--32776039 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
32775978 GTTATAAATG
* *
32775988 TTATTTTTTATGTTATT
1 TTATTTTTTTTATT-TT
* **
32776005 TTATTTGTTTTAGATT
1 TTATTTTTTTTATTTT
32776021 TTATTTTTTTTATTTT
1 TTATTTTTTTTATTTT
32776037 TTA
1 TTA
32776040 AGGTATTATT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (16 bp):
TTATTTTTTTTATTTT
Found at i:32778615 original size:38 final size:38
Alignment explanation
Indices: 32778527--32778607 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 38
32778517 ACCATCTTAT
*
32778527 TACTCCACTCCTCCCAGCCCAGCCTGTATCCACCGCAG
1 TACTCCACTCCTCCCAGCCCAGCCTATATCCACCGCAG
** *
32778565 TACTCCACTCCTCCTGGCCCGGCCTATATCCACCGCAG
1 TACTCCACTCCTCCCAGCCCAGCCTATATCCACCGCAG
32778603 TACTC
1 TACTC
32778608 TTCTCCTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.17, C:0.48, G:0.14, T:0.21
Consensus pattern (38 bp):
TACTCCACTCCTCCCAGCCCAGCCTATATCCACCGCAG
Found at i:32778986 original size:48 final size:48
Alignment explanation
Indices: 32778852--32779019 Score: 177
Period size: 48 Copynumber: 3.5 Consensus size: 48
32778842 ATGCAAAAAT
* *
32778852 ACAAACTTTGTAATTTTAATTAGATTAATTGCAAC----AAACTCTAG-
1 ACAAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACT-TGGA
* *
32778896 ACAAACTTTGT-ATTTAATTAATTGAGATTCATCGCAACATTAAAACTTGGA
1 ACAAACTTTGTAATTT-A--AATT-AGATTAATTGCAACATTAAAACTTGGA
* **
32778947 ATAAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACGAGGA
1 ACAAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACTTGGA
*
32778995 ACAAACTTTGTAATATAAATTAGAT
1 ACAAACTTTGTAATTTAAATTAGAT
32779020 ACATTGGAGT
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
44 11 0.11
46 4 0.04
47 12 0.12
48 46 0.45
49 4 0.04
50 2 0.02
51 16 0.16
52 4 0.04
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (48 bp):
ACAAACTTTGTAATTTAAATTAGATTAATTGCAACATTAAAACTTGGA
Found at i:32782880 original size:109 final size:109
Alignment explanation
Indices: 32782638--32782867 Score: 312
Period size: 109 Copynumber: 2.1 Consensus size: 109
32782628 AGTTACTAAC
* * *
32782638 AAAATAAATTTAAAAAATAATAAAAGATTACATTCATAACCTAACAAATCACAATGAACATTAAA
1 AAAATAAA-TTAAAAAATAAAAAAAAATTACATTCATAACCTAACAAATCACAATAAACATTAAA
*
32782703 CTAAACAAACAATTAACCTAATCACAAAATTAGTAACAAAATAACTTT
65 CTAAACAAACAATT-A--TAATCACAAAATTACTAACAAAATAACTTT
*
32782751 AAAAT-AATTTAAAAAT--AAAAAAATTACATTCATAACCTAACAAATCACAATAAACATTAAAC
1 AAAATAAATTAAAAAATAAAAAAAAATTACATTCATAACCTAACAAATCACAATAAACATTAAAC
* *
32782813 TAAACAAACAATT-T-AT-A-ATAGTTACTAACAAAATAACTTT
66 TAAACAAACAATTATAATCACAAAATTACTAACAAAATAACTTT
32782853 AAAATAAATTAAAAA
1 AAAATAAATTAAAAA
32782868 CAACATAAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
102 25 0.23
103 9 0.08
104 2 0.02
105 1 0.01
109 56 0.52
111 8 0.07
112 2 0.02
113 5 0.05
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.26
Consensus pattern (109 bp):
AAAATAAATTAAAAAATAAAAAAAAATTACATTCATAACCTAACAAATCACAATAAACATTAAAC
TAAACAAACAATTATAATCACAAAATTACTAACAAAATAACTTT
Found at i:32792414 original size:107 final size:107
Alignment explanation
Indices: 32792228--32792447 Score: 404
Period size: 107 Copynumber: 2.1 Consensus size: 107
32792218 TCGATTTAGA
* * *
32792228 TGAATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCTATTGGAACAAATTTTGACATCAG
1 TGAATCAATCATGGAAAAGGAACTCAACTATGTTGAGAACCCATTGGAACAAATTTTGACATCAG
*
32792293 ACCCTCCAAGTGATGAAAAGGATTTAATCTGCAATCCTGCTT
66 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTGCTT
32792335 TGAATCAATCATGGAAAAGGAACTCAACTATGTTGAGAACCCATTGGAACAAATTTTGACATCAG
1 TGAATCAATCATGGAAAAGGAACTCAACTATGTTGAGAACCCATTGGAACAAATTTTGACATCAG
32792400 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTGCTT
66 ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTGCTT
32792442 TGAATC
1 TGAATC
32792448 TTTGGAGTTA
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 109 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (107 bp):
TGAATCAATCATGGAAAAGGAACTCAACTATGTTGAGAACCCATTGGAACAAATTTTGACATCAG
ACCCTCCAAGTGATGAAAAGGATTTAATCCGCAATCCTGCTT
Found at i:32804705 original size:104 final size:105
Alignment explanation
Indices: 32804525--32804792 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
32804515 TAACCGTTAT
* **
32804525 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
32804590 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
32804629 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
32804694 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
32804734 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
32804793 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:32805162 original size:30 final size:30
Alignment explanation
Indices: 32805128--32805185 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
32805118 CCACCCAACT
32805128 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
*** * *
32805158 TTTTGCGTAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
32805186 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:32816392 original size:9 final size:9
Alignment explanation
Indices: 32816364--32816447 Score: 132
Period size: 9 Copynumber: 9.3 Consensus size: 9
32816354 TCAGTTGAAC
32816364 TAAATCGGT
1 TAAATCGGT
* *
32816373 TAAGTCAGT
1 TAAATCGGT
32816382 TAAATCGGT
1 TAAATCGGT
32816391 TAAATCGGT
1 TAAATCGGT
32816400 TAAATCGGT
1 TAAATCGGT
32816409 TAAATCGGT
1 TAAATCGGT
*
32816418 TAAGTCGGT
1 TAAATCGGT
32816427 TAAATCGGT
1 TAAATCGGT
*
32816436 TAAATCGAT
1 TAAATCGGT
32816445 TAA
1 TAA
32816448 TTTTTAACCA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (9 bp):
TAAATCGGT
Found at i:32816747 original size:17 final size:16
Alignment explanation
Indices: 32816720--32816779 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
32816710 AAAAGTTACA
32816720 AAATAAAAAATATAAT
1 AAATAAAAAATATAAT
* *
32816736 AATTATAAAAATATTAT
1 AAATA-AAAAATATAAT
* *
32816753 AAATAAAAAATAAAAA
1 AAATAAAAAATATAAT
*
32816769 AAATAGAAAAT
1 AAATAAAAAAT
32816780 TACAAAAATA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (16 bp):
AAATAAAAAATATAAT
Found at i:32816763 original size:40 final size:40
Alignment explanation
Indices: 32816719--32816794 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
32816709 GAAAAGTTAC
* * *
32816719 AAAATAAAAAATATA-ATAATTATAAAAATATTATAAATAA
1 AAAATAAAAAAAATAGAAAATTACAAAAATA-TATAAATAA
32816759 AAAATAAAAAAAATAGAAAATTACAAAAATATATAA
1 AAAATAAAAAAAATAGAAAATTACAAAAATATATAA
32816795 TTATTATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 19 0.59
41 13 0.41
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (40 bp):
AAAATAAAAAAAATAGAAAATTACAAAAATATATAAATAA
Found at i:32816772 original size:16 final size:16
Alignment explanation
Indices: 32816719--32816789 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
32816709 GAAAAGTTAC
*
32816719 AAAATAAAAAATATAA
1 AAAATAAAAAATAAAA
* * **
32816735 TAATTATAAAAATATTA
1 AAAATA-AAAAATAAAA
*
32816752 TAAATAAAAAATAAAA
1 AAAATAAAAAATAAAA
* * *
32816768 AAAATAGAAAATTACA
1 AAAATAAAAAATAAAA
32816784 AAAATA
1 AAAATA
32816790 TATAATTATT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
16 30 0.68
17 14 0.32
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (16 bp):
AAAATAAAAAATAAAA
Found at i:32816854 original size:21 final size:21
Alignment explanation
Indices: 32816793--32816854 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 21
32816783 AAAAATATAT
*
32816793 AATTATTATAATTTTTAAAAATAA
1 AATTATTA-AATTATT--AAATAA
* **
32816817 AATTA-CAAAAAATTAAATAA
1 AATTATTAAATTATTAAATAA
32816837 AATTATTAAATTATTAAA
1 AATTATTAAATTATTAAA
32816855 AATTAAAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 11 0.37
21 9 0.30
22 4 0.13
23 1 0.03
24 5 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTATTAAATTATTAAATAA
Found at i:32817299 original size:28 final size:26
Alignment explanation
Indices: 32817250--32817331 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 26
32817240 CTTAATGTAA
* *
32817250 TTTTTATTATGTTATATTATTTTTTTAT
1 TTTTTATTAT-TTA-AATATTTTTTTAG
32817278 TTTTTATTACTTTAAATAATTTTTTATAG
1 TTTTTATTA-TTTAAAT-ATTTTTT-TAG
* *
32817307 TTTTTAATAATTTTAATATTTTTTT
1 TTTTT-ATTATTTAAATATTTTTTT
32817332 CCTAGGAAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
27 3 0.07
28 26 0.57
29 14 0.30
30 3 0.07
ACGTcount: A:0.27, C:0.01, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTTTATTATTTAAATATTTTTTTAG
Found at i:32817302 original size:29 final size:28
Alignment explanation
Indices: 32817269--32817331 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
32817259 TGTTATATTA
* * *
32817269 TTTTTTTATTTTTTATTACTTTAAATAAT
1 TTTTTTTAGTTTTTAATAATTTAAAT-AT
* *
32817298 TTTTTATAGTTTTTAATAATTTTAATAT
1 TTTTTTTAGTTTTTAATAATTTAAATAT
32817326 TTTTTT
1 TTTTTT
32817332 CCTAGGAAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (28 bp):
TTTTTTTAGTTTTTAATAATTTAAATAT
Found at i:32820317 original size:2 final size:2
Alignment explanation
Indices: 32820310--32820341 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32820300 TTCAGAGTTT
32820310 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
32820342 ACACACACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:32821643 original size:24 final size:24
Alignment explanation
Indices: 32821580--32821631 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32821570 TTTCTTGAAG
* * *
32821580 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
32821604 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
32821628 ATTT
1 ATTT
32821632 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:32825956 original size:24 final size:24
Alignment explanation
Indices: 32825922--32825973 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
32825912 TTTCTAGAAA
* *
32825922 ATTTAGTATTTA-TGAGTATAATAT
1 ATTTAGCATTTAGT-AGCATAATAT
32825946 ATTTAGCATTTAGTAGCATAATAT
1 ATTTAGCATTTAGTAGCATAATAT
32825970 ATTT
1 ATTT
32825974 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTAGTAGCATAATAT
Found at i:32843274 original size:7 final size:7
Alignment explanation
Indices: 32843262--32843290 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32843252 AAGCATAAGA
32843262 TATTTAT
1 TATTTAT
32843269 TATTTAT
1 TATTTAT
32843276 TATTTAT
1 TATTTAT
32843283 TA-TTAT
1 TATTTAT
32843289 TA
1 TA
32843291 AATTAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TATTTAT
Found at i:32844050 original size:22 final size:24
Alignment explanation
Indices: 32844025--32844069 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
32844015 ATATGGCAAA
32844025 GAATTAAG-TAGAAAAG-AAGTAT
1 GAATTAAGTTAGAAAAGTAAGTAT
32844047 GAATTAAGTTAGAAAAGTAAGTA
1 GAATTAAGTTAGAAAAGTAAGTA
32844070 AACTTAGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.24
Consensus pattern (24 bp):
GAATTAAGTTAGAAAAGTAAGTAT
Found at i:32848118 original size:13 final size:13
Alignment explanation
Indices: 32848100--32848124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32848090 TTTTATATTT
32848100 ATAATTTTTTTTA
1 ATAATTTTTTTTA
32848113 ATAATTTTTTTT
1 ATAATTTTTTTT
32848125 CAAAAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
ATAATTTTTTTTA
Found at i:32853635 original size:129 final size:127
Alignment explanation
Indices: 32853450--32853713 Score: 395
Period size: 130 Copynumber: 2.1 Consensus size: 127
32853440 TTCTTATTGA
* *
32853450 TTGATTTAGCTGTTCTTAGTTCTTTAAACTACAGCCTTCGCTTTTGTGTTCTTTCAGTTC-AATT
1 TTGATTTTGCTGTTCTTAGCTCTTTAAACTACAGCCTTCGCTTTTGTGTTCTTTCAGTTCAAATT
* *
32853514 AAAATGGGTTTGTTTGTTTTTACTTTTTCTGTACTATTTGATTCTTATTGATTGCCCCTTTT
66 AAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTT
* * *
32853576 GTTGATTTTGCTGTTCTTAGCTCTTTGCAAATTACAGTCTTTGCTTTTGTGTTCTTTCAGTTCAA
1 -TTGATTTTGCTGTTCTTAGCTCTTT--AAACTACAGCCTTCGCTTTTGTGTTCTTTCAGTTCAA
* * * *
32853641 ATTTAAATGGGTTTGTCTGTTTTTACTTTTTTTGTACTGTTTGATTCTTATTGATTGCTCATTTT
63 ATTAAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTT
32853706 TTGATTTT
1 TTGATTTT
32853714 ACTATTTTTA
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
127 23 0.19
129 40 0.33
130 60 0.49
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.55
Consensus pattern (127 bp):
TTGATTTTGCTGTTCTTAGCTCTTTAAACTACAGCCTTCGCTTTTGTGTTCTTTCAGTTCAAATT
AAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGATTCTTATTGATTGCCCATTTT
Found at i:32857309 original size:49 final size:49
Alignment explanation
Indices: 32857249--32857383 Score: 234
Period size: 49 Copynumber: 2.8 Consensus size: 49
32857239 GATAATAACA
* *
32857249 TGCCAAAGCCATATCCTAGACATGGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGATGTTTCTTGTAC
32857298 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGATGTTTCTTGTAC
* *
32857347 TACCAATGCCATATCCCAGATATGGTCTTACATGGGA
1 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGA
32857384 GTTCTCATAT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 82 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (49 bp):
TGCCAATGCCATATCCTAGATATGGTCTTACATGGGATGTTTCTTGTAC
Found at i:32857423 original size:50 final size:50
Alignment explanation
Indices: 32857249--32857594 Score: 288
Period size: 50 Copynumber: 6.8 Consensus size: 50
32857239 GATAATAACA
* * * ** * * *
32857249 TGCCAAAGCCATATCCTAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** * * *
32857298 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** *
32857347 TACCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
32857397 TTCCCATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATCTCGG
* *
32857447 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
32857497 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
* * *
32857553 TGCCAATGCCATGTCTCAGACATAGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32857595 TTACCCAAAT
Statistics
Matches: 257, Mismatches: 30, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
48 1 0.00
49 88 0.34
50 123 0.48
51 1 0.00
53 5 0.02
56 39 0.15
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:32861614 original size:26 final size:26
Alignment explanation
Indices: 32861578--32861628 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32861568 CTCAAGCATA
32861578 CTTGCAGAGTCTGACAAATTCACGTG
1 CTTGCAGAGTCTGACAAATTCACGTG
*
32861604 CTTGTAGAGTCTGACAAATTCACGT
1 CTTGCAGAGTCTGACAAATTCACGT
32861629 TCATACTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTGCAGAGTCTGACAAATTCACGTG
Found at i:32863860 original size:40 final size:40
Alignment explanation
Indices: 32863622--32863846 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
32863612 TTGAATGATG
* * * *
32863622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32863661 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32863701 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32863741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32863781 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32863822 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32863847 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 19 0.11
40 150 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32871120 original size:40 final size:39
Alignment explanation
Indices: 32871036--32871220 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
32871026 TTGAATGATG
* * * *
32871036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32871076 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
32871116 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32871155 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
32871196 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
32871221 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 37 0.30
40 76 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32871172 original size:79 final size:81
Alignment explanation
Indices: 32871036--32871220 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
32871026 TTGAATGATG
* *
32871036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32871100 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32871115 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32871177 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* * *
32871195 ACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32871221 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32871242 original size:79 final size:79
Alignment explanation
Indices: 32871089--32871253 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
32871079 GGACTAAGAT
* * **
32871089 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32871154 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
32871168 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32871231 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32871247 CCGAAGG
1 CCGAAGG
32871254 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32879241 original size:79 final size:81
Alignment explanation
Indices: 32879105--32879289 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32879095 TTGAATGATG
* *
32879105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32879169 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32879184 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32879246 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32879264 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32879290 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32879303 original size:40 final size:41
Alignment explanation
Indices: 32879105--32879289 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
32879095 TTGAATGATG
* * *
32879105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32879145 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
32879185 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
32879224 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32879265 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32879290 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32883183 original size:120 final size:120
Alignment explanation
Indices: 32882951--32883209 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 120
32882941 TTGAATGATG
* * *
32882951 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
**
32883016 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
32883071 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
32883134 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
32883191 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32883210 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 91 0.76
121 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:32883190 original size:40 final size:40
Alignment explanation
Indices: 32882951--32883176 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
32882941 TTGAATGATG
* * * *
32882951 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
32882991 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32883031 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32883071 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32883111 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32883152 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32883177 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32886305 original size:50 final size:50
Alignment explanation
Indices: 32886181--32886477 Score: 294
Period size: 50 Copynumber: 5.8 Consensus size: 50
32886171 GATAATAACA
* * * ** * * *
32886181 TGCCAAAGCCATATCCTAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * **
32886230 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
32886280 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATATCGG
* * *
32886330 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
32886380 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
** *
32886436 TGCCAATGCCATGTCTTAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32886478 TTACCCAAAT
Statistics
Matches: 212, Mismatches: 26, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
48 1 0.00
49 40 0.19
50 127 0.60
51 1 0.00
53 2 0.01
56 41 0.19
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:32886845 original size:29 final size:30
Alignment explanation
Indices: 32886813--32886869 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32886803 CCTCGACTCT
32886813 AACTTTTA-AAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
32886842 AACTTTTACATAATTACACTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
32886870 AAAGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.39
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:32890598 original size:26 final size:28
Alignment explanation
Indices: 32890522--32890596 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 28
32890512 ATAATAATAC
32890522 AAAGAACTATGAGTTTTTGAATAACATAAA
1 AAAGAACTATGAGTTTTTGAATAACAT--A
*
32890552 ATCAAGGACTATG-GTTTTTGAATAACAT-
1 A--AAGAACTATGAGTTTTTGAATAACATA
32890580 AAAGAACTATGAGTTTT
1 AAAGAACTATGAGTTTT
32890597 GATTTTTTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 9 0.22
27 5 0.12
28 1 0.03
30 1 0.03
31 15 0.38
32 9 0.22
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (28 bp):
AAAGAACTATGAGTTTTTGAATAACATA
Found at i:32890970 original size:10 final size:10
Alignment explanation
Indices: 32890955--32890980 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32890945 ATATTAAATT
32890955 TATTATTAAA
1 TATTATTAAA
32890965 TATTATTAAA
1 TATTATTAAA
32890975 TATTAT
1 TATTAT
32890981 GTTAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TATTATTAAA
Found at i:32891027 original size:26 final size:26
Alignment explanation
Indices: 32890998--32891047 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
32890988 AATGACTAAA
** *
32890998 ATATTTAATTTTAATTTTATTAAATT
1 ATATTTAATAATAATCTTATTAAATT
32891024 ATATTTAATAATAATCTTATTAAA
1 ATATTTAATAATAATCTTATTAAA
32891048 ATTTAATAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (26 bp):
ATATTTAATAATAATCTTATTAAATT
Found at i:32891200 original size:44 final size:46
Alignment explanation
Indices: 32891149--32891237 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
32891139 ACCCATATTA
32891149 CATTCAACCAAAC-ACAAGAA-TACT-ATTACAGTTCTATTCCATTC
1 CATTCAACCAAACAAC-AGAATTACTGATTACAGTTCTATTCCATTC
* * *
32891193 CATTCAACCAAACAACTGAATTATTGATTACGGTTCTATTCCATT
1 CATTCAACCAAACAACAGAATTACTGATTACAGTTCTATTCCATT
32891238 ACAGCTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 16 0.41
45 5 0.13
46 18 0.46
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.33
Consensus pattern (46 bp):
CATTCAACCAAACAACAGAATTACTGATTACAGTTCTATTCCATTC
Found at i:32891431 original size:16 final size:16
Alignment explanation
Indices: 32891407--32891438 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32891397 ACACCTATTA
32891407 TTTAAAATAATTGTTG
1 TTTAAAATAATTGTTG
*
32891423 TTTAGAATAATTGTTG
1 TTTAAAATAATTGTTG
32891439 GTTGAGGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (16 bp):
TTTAAAATAATTGTTG
Found at i:32896745 original size:39 final size:39
Alignment explanation
Indices: 32896695--32896790 Score: 165
Period size: 39 Copynumber: 2.5 Consensus size: 39
32896685 GGAGTTGTAA
*
32896695 GTGACTATTCATCTACATCACTTAAGTGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
* *
32896734 GTGACTATTCATTTTCATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
32896773 GTGACTATTCATCTACAT
1 GTGACTATTCATCTACAT
32896791 GCATGTGTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:32896824 original size:16 final size:16
Alignment explanation
Indices: 32896803--32896857 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
32896793 ATGTGTGTAA
32896803 CTCTTCATATTCAAGT
1 CTCTTCATATTCAAGT
*
32896819 CTCTTCACATTTCTAA--
1 CTCTTCATA-TTC-AAGT
*
32896835 CTCTTCATCTTCAAGT
1 CTCTTCATATTCAAGT
32896851 CTCTTCA
1 CTCTTCA
32896858 CATACCTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.06
15 3 0.09
16 22 0.69
17 3 0.09
18 2 0.06
ACGTcount: A:0.22, C:0.31, G:0.04, T:0.44
Consensus pattern (16 bp):
CTCTTCATATTCAAGT
Found at i:32896836 original size:32 final size:32
Alignment explanation
Indices: 32896800--32896860 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
32896790 TGCATGTGTG
32896800 TAACTCTTCATATTCAAGTCTCTTCACATTTC
1 TAACTCTTCATATTCAAGTCTCTTCACATTTC
*
32896832 TAACTCTTCATCTTCAAGTCTCTTCACAT
1 TAACTCTTCATATTCAAGTCTCTTCACAT
32896861 ACCTAGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.43
Consensus pattern (32 bp):
TAACTCTTCATATTCAAGTCTCTTCACATTTC
Found at i:32898245 original size:16 final size:15
Alignment explanation
Indices: 32898204--32898247 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
32898194 GTTTTAAATT
32898204 ATTTTTATTTTGAAC
1 ATTTTTATTTTGAAC
* * *
32898219 ACTTATATTTTAGATC
1 ATTTTTATTTT-GAAC
32898235 ATTTTTATTTTGA
1 ATTTTTATTTTGA
32898248 TTACTCTTCA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (15 bp):
ATTTTTATTTTGAAC
Found at i:32906057 original size:37 final size:37
Alignment explanation
Indices: 32906011--32906093 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 37
32906001 ATTCCAAAAA
32906011 TAATA-TTATTTTAATAGT-TTAATATTAAATTTAA-AT
1 TAATAGTTATTTTAATAGTATT-ATATT-AATTTAATAT
*
32906047 TAATAGTTATTTTAATAGTATTTTATTAATTTAATAT
1 TAATAGTTATTTTAATAGTATTATATTAATTTAATAT
32906084 TAA-AGTTATT
1 TAATAGTTATT
32906094 ATCTTAATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
36 19 0.44
37 22 0.51
38 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (37 bp):
TAATAGTTATTTTAATAGTATTATATTAATTTAATAT
Found at i:32906092 original size:20 final size:19
Alignment explanation
Indices: 32906014--32906118 Score: 62
Period size: 20 Copynumber: 5.6 Consensus size: 19
32906004 CCAAAAATAA
* *
32906014 TATTATTTTAATAGTTTAA-
1 TATTAATTTAATA-TTAAAT
32906033 TATTAAATTTAA-ATT-AA-
1 TATT-AATTTAATATTAAAT
* * **
32906050 TAGTTATTTTAATAGTATTT
1 TA-TTAATTTAATATTAAAT
32906070 TATTAATTTAATATTAAAGT
1 TATTAATTTAATATTAAA-T
32906090 TATT-ATCTTAATATTAAA-
1 TATTAAT-TTAATATTAAAT
32906108 T-TTAATTTAAT
1 TATTAATTTAAT
32906119 GTTTATCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
17 17 0.25
18 9 0.13
19 19 0.28
20 24 0.35
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (19 bp):
TATTAATTTAATATTAAAT
Found at i:32916042 original size:11 final size:11
Alignment explanation
Indices: 32916026--32916120 Score: 61
Period size: 11 Copynumber: 8.4 Consensus size: 11
32916016 AAATCAATTG
32916026 AAAGAAAAAGA
1 AAAGAAAAAGA
32916037 AAAGAAAAATGA
1 AAAGAAAAA-GA
*
32916049 GAAACAAGAAAG-
1 -AAAGAA-AAAGA
* *
32916061 CAA-AAATAGCA
1 AAAGAAAAAG-A
* **
32916072 AAATAAAGTGA
1 AAAGAAAAAGA
32916083 AAAGAAAATGAGA
1 AAAGAAAA--AGA
32916096 AAAGAAAAAGA
1 AAAGAAAAAGA
32916107 AAAG-AAAAGA
1 AAAGAAAAAGA
32916117 AAAG
1 AAAG
32916121 TTTGATTGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
9 3 0.04
10 12 0.18
11 27 0.40
12 6 0.09
13 16 0.24
14 3 0.04
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:32916060 original size:20 final size:21
Alignment explanation
Indices: 32916028--32916067 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32916018 ATCAATTGAA
32916028 AGAAAAAGAAAAG-AAAAATG
1 AGAAAAAGAAAAGCAAAAATG
32916048 AGAAACAAG-AAAGCAAAAAT
1 AGAAA-AAGAAAAGCAAAAAT
32916068 AGCAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.72, C:0.05, G:0.17, T:0.05
Consensus pattern (21 bp):
AGAAAAAGAAAAGCAAAAATG
Found at i:32925227 original size:16 final size:16
Alignment explanation
Indices: 32925206--32925236 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32925196 ATCACTATTA
*
32925206 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
32925222 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
32925237 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:32945930 original size:11 final size:12
Alignment explanation
Indices: 32945914--32945968 Score: 73
Period size: 11 Copynumber: 4.8 Consensus size: 12
32945904 ATTAAATATG
32945914 AATTTGAGA-GA
1 AATTTGAGAGGA
32945925 AATTTG-GAAGGA
1 AATTTGAG-AGGA
32945937 AA-TTGAGAGGA
1 AATTTGAGAGGA
32945948 AA-TTGAGAGGA
1 AATTTGAGAGGA
32945959 AATTTGAGAG
1 AATTTGAGAG
32945969 AGAATTTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
10 1 0.03
11 27 0.68
12 12 0.30
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.24
Consensus pattern (12 bp):
AATTTGAGAGGA
Found at i:32945942 original size:22 final size:24
Alignment explanation
Indices: 32945914--32945976 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 24
32945904 ATTAAATATG
32945914 AATTTGAGAGAAATTTGGA-AGGA
1 AATTTGAGAGAAATTTGGAGAGGA
32945937 AA-TTGAGAGGAAA-TT-GAGAGGA
1 AATTTGAGA-GAAATTTGGAGAGGA
32945959 AATTTGAGAGAGAATTTG
1 AATTTGAGAGA-AATTTG
32945977 TTTGTGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
21 2 0.06
22 16 0.47
23 14 0.41
24 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (24 bp):
AATTTGAGAGAAATTTGGAGAGGA
Found at i:32945974 original size:12 final size:12
Alignment explanation
Indices: 32945913--32945976 Score: 57
Period size: 11 Copynumber: 5.6 Consensus size: 12
32945903 GATTAAATAT
32945913 GAATTTGAGAGA
1 GAATTTGAGAGA
32945925 -AATTTG-GA-A
1 GAATTTGAGAGA
*
32945934 GGAAATTGAGAG-
1 -GAATTTGAGAGA
*
32945946 GAAATTGAGAG-
1 GAATTTGAGAGA
32945957 GAAATTTGAGAGA
1 G-AATTTGAGAGA
32945970 GAATTTG
1 GAATTTG
32945977 TTTGTGAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
9 1 0.02
10 2 0.05
11 23 0.52
12 17 0.39
13 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (12 bp):
GAATTTGAGAGA
Found at i:32958239 original size:29 final size:30
Alignment explanation
Indices: 32958196--32958253 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
32958186 CCTTTTTAAT
*
32958196 TTCCCCCCAATACTTTTAC-ACCCTCCCAC
1 TTCCCCCCAAGACTTTTACTACCCTCCCAC
*
32958225 TTCCCCCCAAGACTTTTACTTCCCTCCCA
1 TTCCCCCCAAGACTTTTACTACCCTCCCA
32958254 TCGCACCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.19, C:0.50, G:0.02, T:0.29
Consensus pattern (30 bp):
TTCCCCCCAAGACTTTTACTACCCTCCCAC
Found at i:32958545 original size:163 final size:163
Alignment explanation
Indices: 32958328--32958629 Score: 457
Period size: 163 Copynumber: 1.9 Consensus size: 163
32958318 TTTGCCCCCA
* * *
32958328 AAATTTTATTCCCCTCACCCTCAAAACTTTTTATTCCCCCTAAACTTTTACTTTTCACCCTTTAC
1 AAATTTTATTCCCCTAACCCTCAAAACTTATTATTCCCCCTAAACTTTTACTTTTCACCATTTAC
* * *
32958393 CCTAAATAAAAAATCAT-CAAAAAAA-ATCCTTAAACATAAATAGTAATAATTTTATTTATATAT
66 CCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGATAT
32958456 ACTATTTATTTACCCCCATTTACTTTCCCTCTC
131 ACTATTTATTTACCCCCATTTACTTTCCCTCTC
*
32958489 AAATTTTATTCTCCC-AACCTTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
1 AAATTTTATTC-CCCTAACCCTCAAAACTTATTA-TT-CCCCCTAAACTTTTACTTTTCACCATT
* *
32958553 TACCCCAAATAAAAGATCATCCAAAAAAATATCCCTAAATATAAATAGTAATAATTTTATTTAGA
63 TACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGA
* *
32958618 TCTATTATTTAT
128 TATACTATTTAT
32958630 ATTATTAAAT
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
161 26 0.21
162 5 0.04
163 44 0.35
164 8 0.06
165 42 0.34
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.39
Consensus pattern (163 bp):
AAATTTTATTCCCCTAACCCTCAAAACTTATTATTCCCCCTAAACTTTTACTTTTCACCATTTAC
CCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGATAT
ACTATTTATTTACCCCCATTTACTTTCCCTCTC
Found at i:32963780 original size:40 final size:40
Alignment explanation
Indices: 32963641--32963782 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
32963631 AATGATGTCT
* *
32963641 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCATATCC
* * *
32963681 GGACTAAGAT-CCGAAGGCATTTATGCGAGATACCA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACCATA-TCC
* * *
32963721 GAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATATCC
*
32963760 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
32963783 AACGAGTAGC
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
39 31 0.37
40 45 0.54
41 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATATCC
Found at i:32964076 original size:47 final size:47
Alignment explanation
Indices: 32964007--32964174 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
32963997 AAGGGTTGGT
32964007 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32964054 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
32964101 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32964148 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32964175 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32966089 original size:40 final size:40
Alignment explanation
Indices: 32966034--32966212 Score: 295
Period size: 40 Copynumber: 4.5 Consensus size: 40
32966024 GAGAATTGAG
*
32966034 AGTGATATATCCGGGCTAAGACCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32966074 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
32966114 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
32966154 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
32966194 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
32966213 ACCTCGAAGA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:32971133 original size:29 final size:30
Alignment explanation
Indices: 32971090--32971147 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
32971080 CCTTTTTAAT
*
32971090 TTCCCCCCAATACTTTTAC-ACCCTCCCAC
1 TTCCCCCCAAGACTTTTACTACCCTCCCAC
*
32971119 TTCCCCCCAAGACTTTTACTTCCCTCCCA
1 TTCCCCCCAAGACTTTTACTACCCTCCCA
32971148 TCGCACCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.19, C:0.50, G:0.02, T:0.29
Consensus pattern (30 bp):
TTCCCCCCAAGACTTTTACTACCCTCCCAC
Found at i:32971410 original size:162 final size:165
Alignment explanation
Indices: 32971222--32971524 Score: 461
Period size: 163 Copynumber: 1.9 Consensus size: 165
32971212 TTTGCCCCCA
* * * *
32971222 AAATTTTATTCCCCTCACCCTCAAAACTTTTTA-TTCCCTCCTAAACTTTTACTTTTCACCCTTT
1 AAATTTTATTCCCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
* * *
32971286 ACCCTAAATAAAAAATCAT-CAAAAAAA-ATCCTTAAACATAAATAGTAATAATTTTATTTATAT
66 ACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGAT
32971349 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
131 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
*
32971384 AAATTTTATTCTCCC-AACCTTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
1 AAATTTTATTC-CCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
* *
32971448 TACCCCAAATAAAAGATCATCCAAAAAAATATCCCTAAATATAAATAGTAATAATTTTATTTAGA
65 TACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGA
* *
32971513 TCTATTATTTAT
130 TATACTATTTAT
32971525 ATTATTAAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
162 26 0.21
163 49 0.39
164 8 0.06
165 42 0.34
ACGTcount: A:0.36, C:0.23, G:0.01, T:0.39
Consensus pattern (165 bp):
AAATTTTATTCCCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
ACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGAT
ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
Found at i:32976635 original size:39 final size:40
Alignment explanation
Indices: 32976537--32976678 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
32976527 AATGATGTCT
*
32976537 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACCATATCC
*
32976577 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACCA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACCATA-TCC
* * *
32976617 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
*
32976656 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
32976679 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 33 0.38
40 44 0.50
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
Found at i:32976697 original size:79 final size:80
Alignment explanation
Indices: 32976537--32976684 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
32976527 AATGATGTCT
* **
32976537 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
32976602 CGAGATACCAATTCC
66 CGAGATACCAATTCC
* * * * *
32976617 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
32976679 AACGAG
64 AACGAG
32976685 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACCAATTCC
Found at i:32976987 original size:47 final size:47
Alignment explanation
Indices: 32976903--32977017 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 47
32976893 AAGGGTTGGT
* * * * *
32976903 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
* *
32976950 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
* *
32976997 GATGTGAAAGTGTATAAATGT
1 AATGTGAAAGTGTATATATGT
32977018 GATAAGTCCC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
Found at i:32978934 original size:40 final size:40
Alignment explanation
Indices: 32978879--32979057 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
32978869 GAGAATTGAG
*
32978879 AGTGATATATCCGGGCTAAGACCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32978919 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32978959 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
32978999 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
32979039 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
32979058 ACCTCGAAGA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:32984235 original size:162 final size:163
Alignment explanation
Indices: 32984065--32984365 Score: 446
Period size: 163 Copynumber: 1.9 Consensus size: 163
32984055 TTTGCCCCCA
* * * *
32984065 AAATTTTATTC-CCCTCACCCTCAAAACTTTTTA-TTCCCTCCTAAACTTTTACTTTTCACCCTT
1 AAATTTTATTCTCCC-AACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
* * *
32984128 TACCCTAAATAAAAAATCAT-CAAAAAAAATCCTTAAACATAAATAGTAATAATTTTATTTATAT
65 TACCCCAAATAAAAAATCATCCAAAAAAAATCCCTAAACAT-AATAGTAATAATTTTATTTAGAT
32984192 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
129 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
*
32984227 AAATTTTATTCTCCCAACCTTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
1 AAATTTTATTCTCCCAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
* * * *
32984292 ACCCCAAATAAAAGATCATCCAAAAAATATCCCTAAATATAATAGTAATAATTTTATTTAGATCT
66 ACCCCAAATAAAAAATCATCCAAAAAAAATCCCTAAACATAATAGTAATAATTTTATTTAGATAT
*
32984357 ATTATTTAT
131 ACTATTTAT
32984366 ATTATTAAAT
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
162 26 0.21
163 80 0.65
164 17 0.14
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.39
Consensus pattern (163 bp):
AAATTTTATTCTCCCAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
ACCCCAAATAAAAAATCATCCAAAAAAAATCCCTAAACATAATAGTAATAATTTTATTTAGATAT
ACTATTTATTTACCCCCATTTACTTTCCCTCTC
Found at i:32989467 original size:39 final size:40
Alignment explanation
Indices: 32989369--32989510 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
32989359 AATGATGTCT
*
32989369 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACCATATCC
*
32989409 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACCA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACCATA-TCC
* * *
32989449 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
*
32989488 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
32989511 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 33 0.38
40 44 0.50
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
Found at i:32989529 original size:79 final size:80
Alignment explanation
Indices: 32989369--32989516 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
32989359 AATGATGTCT
* **
32989369 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
32989434 CGAGATACCAATTCC
66 CGAGATACCAATTCC
* * * * *
32989449 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
32989511 AACGAG
64 AACGAG
32989517 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACCAATTCC
Found at i:32989819 original size:47 final size:47
Alignment explanation
Indices: 32989735--32989849 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 47
32989725 AAGGGTTGGT
* * * * *
32989735 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
* *
32989782 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
* *
32989829 GATGTGAAAGTGTATAAATGT
1 AATGTGAAAGTGTATATATGT
32989850 GATAAGTCCC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTAACAAGGCCGAATGGCCAACGTGATG
Found at i:32991770 original size:40 final size:40
Alignment explanation
Indices: 32991715--32991893 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
32991705 GAGAATTGAG
*
32991715 AGTGATATATCCGGGCTAAGACCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32991755 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
32991795 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
32991835 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
32991875 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
32991894 ACCTCGAAGA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:32996817 original size:29 final size:30
Alignment explanation
Indices: 32996774--32996831 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
32996764 CCTTTTTAAT
*
32996774 TTCCCCCCAATACTTTTAC-ACCCTCCCAC
1 TTCCCCCCAAGACTTTTACTACCCTCCCAC
*
32996803 TTCCCCCCAAGACTTTTACTTCCCTCCCA
1 TTCCCCCCAAGACTTTTACTACCCTCCCA
32996832 TCGCACCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.19, C:0.50, G:0.02, T:0.29
Consensus pattern (30 bp):
TTCCCCCCAAGACTTTTACTACCCTCCCAC
Found at i:32997094 original size:162 final size:165
Alignment explanation
Indices: 32996906--32997208 Score: 461
Period size: 163 Copynumber: 1.9 Consensus size: 165
32996896 TTTGCCCCCA
* * * *
32996906 AAATTTTATTCCCCTCACCCTCAAAACTTTTTA-TTCCCTCCTAAACTTTTACTTTTCACCCTTT
1 AAATTTTATTCCCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
* * *
32996970 ACCCTAAATAAAAAATCAT-CAAAAAAA-ATCCTTAAACATAAATAGTAATAATTTTATTTATAT
66 ACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGAT
32997033 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
131 ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
*
32997068 AAATTTTATTCTCCC-AACCTTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
1 AAATTTTATTC-CCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATT
* *
32997132 TACCCCAAATAAAAGATCATCCAAAAAAATATCCCTAAATATAAATAGTAATAATTTTATTTAGA
65 TACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGA
* *
32997197 TCTATTATTTAT
130 TATACTATTTAT
32997209 ATTATTAAAT
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
162 26 0.21
163 49 0.39
164 8 0.06
165 42 0.34
ACGTcount: A:0.36, C:0.23, G:0.01, T:0.39
Consensus pattern (165 bp):
AAATTTTATTCCCCTAACCCTCAAAACTTATTATTTCCCCCCTAAACTTTTACTTTTCACCATTT
ACCCCAAATAAAAAATCATCCAAAAAAATATCCCTAAACATAAATAGTAATAATTTTATTTAGAT
ATACTATTTATTTACCCCCATTTACTTTCCCTCTC
Found at i:33002317 original size:39 final size:40
Alignment explanation
Indices: 33002219--33002360 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
33002209 AATGATGTCT
*
33002219 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACCATATCC
*
33002259 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACCA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACCATA-TCC
* * *
33002299 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
*
33002338 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
33002361 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 33 0.38
40 44 0.50
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACCATATCC
Found at i:33002379 original size:79 final size:80
Alignment explanation
Indices: 33002219--33002366 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
33002209 AATGATGTCT
* **
33002219 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
33002284 CGAGATACCAATTCC
66 CGAGATACCAATTCC
* * * * *
33002299 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
33002361 AACGAG
64 AACGAG
33002367 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACCAATTCC
Found at i:33002654 original size:47 final size:47
Alignment explanation
Indices: 33002585--33002752 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
33002575 AGGGGTTGGT
33002585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33002632 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
33002679 AATGTGAAAGTGTATATATGTAACAGGGCCGATTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33002726 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33002753 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33007255 original size:44 final size:45
Alignment explanation
Indices: 33007207--33007292 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 45
33007197 TCTATTCCGA
33007207 TCAACCAAAACTAA-GAATT-CT-ATTACAGCTCTATTCCATTCCAT
1 TCAACC-AAAC-AATGAATTACTGATTACAGCTCTATTCCATTCCAT
33007251 TCAACCAAACAATTGAATTACTGATTACAGCTCTATTCCATT
1 TCAACCAAACAA-TGAATTACTGATTACAGCTCTATTCCATT
33007293 ACAGCTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
42 2 0.05
43 4 0.11
44 11 0.29
45 2 0.05
46 19 0.50
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (45 bp):
TCAACCAAACAATGAATTACTGATTACAGCTCTATTCCATTCCAT
Found at i:33011969 original size:47 final size:47
Alignment explanation
Indices: 33011911--33012305 Score: 655
Period size: 47 Copynumber: 8.4 Consensus size: 47
33011901 CAGCCAAGAC
33011911 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33011958 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33012005 AGTGTATATGTGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33012052 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33012099 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33012146 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
33012193 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
33012240 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33012287 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
33012306 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 327 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:33012480 original size:37 final size:37
Alignment explanation
Indices: 33012424--33012502 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33012414 CCGAGCTCTA
* *
33012424 AAGACCCGATGACTACGTGT-GAGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
33012461 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33012498 AAGAC
1 AAGAC
33012503 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 35 0.92
38 3 0.08
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33020972 original size:47 final size:47
Alignment explanation
Indices: 33020909--33021637 Score: 1050
Period size: 47 Copynumber: 15.6 Consensus size: 47
33020899 CCTTTCGGGA
* * *
33020909 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
33020956 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021003 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021050 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
33021097 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
33021144 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
33021191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021285 CTTATCACATATATATACACTTTTACAGTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021334 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021381 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021428 CTTATCACATATATATACACTTTTACAGTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
33021477 CTTATCACATATATACACTTTCACA-T--T--CA-T---CATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021515 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
33021562 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
33021611 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
33021638 TATTCAAATA
Statistics
Matches: 637, Mismatches: 28, Indels: 34
0.91 0.04 0.05
Matches are distributed among these distances:
38 33 0.05
39 1 0.00
41 2 0.00
42 2 0.00
43 2 0.00
44 1 0.00
46 2 0.00
47 460 0.72
48 1 0.00
49 133 0.21
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:33021542 original size:38 final size:38
Alignment explanation
Indices: 33021469--33021546 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
33021459 TCACATTGGC
33021469 CATTCGGCCTTATCACATATATACACTTTCACATTCAT
1 CATTCGGCCTTATCACATATATACACTTTCACATTCAT
33021507 CATTCGGCCTTATCACATATATACACTTTCACATTCAT
1 CATTCGGCCTTATCACATATATACACTTTCACATTCAT
33021545 CA
1 CA
33021547 CATCGGCCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.36
Consensus pattern (38 bp):
CATTCGGCCTTATCACATATATACACTTTCACATTCAT
Found at i:33021576 original size:87 final size:86
Alignment explanation
Indices: 33021420--33021595 Score: 273
Period size: 85 Copynumber: 2.0 Consensus size: 86
33021410 TCACATCGGC
* * *
33021420 CATTAGGCCTTATCACATATATATACACTTTTACAGTCATCACATTGGCCATTCGGCCTTATCAC
1 CATTAGGCCTTATCACA-ATATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCAC
33021485 ATATATACACTTTCACATTCAT
65 ATATATACACTTTCACATTCAT
* *
33021507 CATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CATTAGGCCTTATCACAATATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCAC-
33021571 TATATATACACTTTCACATTCAT
65 -ATATATACACTTTCACATTCAT
33021594 CA
1 CA
33021596 CATCGGCCAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
85 43 0.52
87 39 0.48
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (86 bp):
CATTAGGCCTTATCACAATATATACACTTTCACAGTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACTTTCACATTCAT
Found at i:33023573 original size:56 final size:56
Alignment explanation
Indices: 33023506--33023625 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
33023496 TATTAGTTTA
33023506 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
33023562 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
33023618 TTGCCCAT
1 TTGCCCAT
33023626 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:33038578 original size:39 final size:39
Alignment explanation
Indices: 33038514--33038756 Score: 270
Period size: 39 Copynumber: 6.2 Consensus size: 39
33038504 AAGTTAGATG
** * *
33038514 TTGTACTTCAATACCCTTGATTGCACATACGTGCCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
*** * ** *
33038553 TTGTACTTCGGTATTGCTAAATGCACATACGTGCCATTG
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
* * * *
33038592 TTGTACGTCGGTACCCCTGATTGTACATACGTGCCCCTG
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
* * *
33038631 TAGTACTTCGGTACCCCTGAATGCACATATGTGGCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
* *
33038670 TTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTA
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
* * * *
33038709 TTGTACTTCGGTACCCTTGAATGCATATACGTGCCGCTG
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
33038748 TTGTACTTC
1 TTGTACTTC
33038757 AATATCACTG
Statistics
Matches: 166, Mismatches: 38, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (39 bp):
TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTA
Found at i:33038617 original size:20 final size:20
Alignment explanation
Indices: 33038592--33038724 Score: 78
Period size: 20 Copynumber: 6.8 Consensus size: 20
33038582 CGTGCCATTG
*
33038592 TTGTACGTCGGTACCCCTGA
1 TTGTACATCGGTACCCCTGA
*
33038612 TTGTACATAC-GTGCCCCTG-
1 TTGTACAT-CGGTACCCCTGA
* *
33038631 TAGTACTTCGGTACCCCTGA
1 TTGTACATCGGTACCCCTGA
* * ** **
33038651 ATGCACATATGTGGCCCT-A
1 TTGTACATCGGTACCCCTGA
* *
33038670 TTGTACTTTGGTACCCCTGA
1 TTGTACATCGGTACCCCTGA
* *
33038690 TTGCACATAC-GTGCCCCT-A
1 TTGTACAT-CGGTACCCCTGA
*
33038709 TTGTACTTCGGTACCC
1 TTGTACATCGGTACCC
33038725 TTGAATGCAT
Statistics
Matches: 80, Mismatches: 27, Indels: 13
0.67 0.22 0.11
Matches are distributed among these distances:
18 2 0.03
19 38 0.47
20 39 0.49
21 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.20, T:0.32
Consensus pattern (20 bp):
TTGTACATCGGTACCCCTGA
Found at i:33038647 original size:19 final size:20
Alignment explanation
Indices: 33038594--33038650 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 20
33038584 TGCCATTGTT
* *
33038594 GTACGTCGGTACCCCTGATT
1 GTACTTCGGTACCCCTGATA
* *
33038614 GTACATAC-GTGCCCCTG-TA
1 GTAC-TTCGGTACCCCTGATA
33038633 GTACTTCGGTACCCCTGA
1 GTACTTCGGTACCCCTGA
33038651 ATGCACATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
18 2 0.07
19 13 0.46
20 12 0.43
21 1 0.04
ACGTcount: A:0.18, C:0.32, G:0.23, T:0.28
Consensus pattern (20 bp):
GTACTTCGGTACCCCTGATA
Found at i:33038752 original size:78 final size:76
Alignment explanation
Indices: 33038512--33038756 Score: 301
Period size: 78 Copynumber: 3.1 Consensus size: 76
33038502 AGAAGTTAGA
** * ** *
33038512 TGTTGTACTTCAATACCCTTGATTGCACATACGTGCCCCTATTGTACTTCGGTATTGCTAAATGC
1 TGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTGTACTTCGGTA-CCCTGAATGC
*
33038577 ACATACGTGCCAT
65 ACATACGTGCC-C
* * * *
33038590 TGTTGTACGTCGGTACCCCTGATTGTACATACGTGCCCCTGTAGTACTTCGGTACCCCTGAATGC
1 TGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTGTACTTCGGTA-CCCTGAATGC
*
33038655 ACATATGTGGCCC
65 ACATACGT-GCCC
* *
33038668 TATTGTACTTTGGTACCCCTGATTGCACATACGTGCCCCTATTGTACTTCGGTACCCTTGAATGC
1 TGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTGTACTTCGGTACCC-TGAATGC
*
33038733 ATATACGTGCCGC
65 ACATACGTGCC-C
33038746 TGTTGTACTTC
1 TGTTGTACTTC
33038757 AATATCACTG
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
77 6 0.04
78 132 0.94
79 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (76 bp):
TGTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTGTACTTCGGTACCCTGAATGCA
CATACGTGCCC
Found at i:33042256 original size:43 final size:43
Alignment explanation
Indices: 33042209--33042386 Score: 141
Period size: 42 Copynumber: 4.2 Consensus size: 43
33042199 GAACACATAA
*
33042209 CAACCCCTTTCATAATAAAAGATACCGTGGAATCAGCACTTAG
1 CAACCCCTTTCATAATCAAAGATACCGTGGAATCAGCACTTAG
* ** * *
33042252 CAACCACCTTT-ATATTCAGTGATA-CGGGGAATCAGCACATAG
1 CAACC-CCTTTCATAATCAAAGATACCGTGGAATCAGCACTTAG
* * * * *
33042294 CAACCCCTTTCACAATCAAATATACAGTAGAATCAGCACTTAA
1 CAACCCCTTTCATAATCAAAGATACCGTGGAATCAGCACTTAG
** * * **
33042337 CTGCCACGTTT-AGAATCAATA-ATTTCG-GGAATCAGCACTTAG
1 CAACC-CCTTTCATAATCAA-AGATACCGTGGAATCAGCACTTAG
33042379 CAACCCCT
1 CAACCCCT
33042387 CGAGAATCTG
Statistics
Matches: 102, Mismatches: 28, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
41 7 0.07
42 45 0.44
43 40 0.39
44 10 0.10
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.24
Consensus pattern (43 bp):
CAACCCCTTTCATAATCAAAGATACCGTGGAATCAGCACTTAG
Found at i:33042288 original size:42 final size:41
Alignment explanation
Indices: 33042157--33042303 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 41
33042147 CTCGGTGGAT
* * * *
33042157 TCAGCACTTAGCAAGCACTTTAAATTCAGTGATACGGGGAA
1 TCAGCACATAGCAACCCCTTTATATTCAGTGATACGGGGAA
* * * * * ** *
33042198 TGAACACATAACAACCCCTTTCATAATAAAAGATACCGTGGAA
1 TCAGCACATAGCAACCCCTTT-ATATTCAGTGATA-CGGGGAA
*
33042241 TCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAA
1 TCAGCACATAGCAACC-CCTTTATATTCAGTGATACGGGGAA
33042283 TCAGCACATAGCAACCCCTTT
1 TCAGCACATAGCAACCCCTTT
33042304 CACAATCAAA
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
41 20 0.25
42 29 0.36
43 27 0.33
44 5 0.06
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (41 bp):
TCAGCACATAGCAACCCCTTTATATTCAGTGATACGGGGAA
Found at i:33042298 original size:85 final size:84
Alignment explanation
Indices: 33042151--33042335 Score: 262
Period size: 85 Copynumber: 2.2 Consensus size: 84
33042141 CCGTTACTCG
* * *
33042151 GTGGATTCAGCACTTAGCAAGCACTTTAAATTCAGTGATACGGGGAATGAACACATAACAACCCC
1 GTGGAATCAGCACTTAGCAACCACTTTAAATTCAGTGATACGGGGAATCAACACATAACAACCCC
* *
33042216 TTTCATAATAAAAGATACC
66 TTTCACAATAAAAGATACA
* * *
33042235 GTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCC
1 GTGGAATCAGCACTTAGCAACCA-CTTTAAATTCAGTGATACGGGGAATCAACACATAACAACCC
* *
33042300 CTTTCACAATCAAATATACA
65 CTTTCACAATAAAAGATACA
*
33042320 GTAGAATCAGCACTTA
1 GTGGAATCAGCACTTA
33042336 ACTGCCACGT
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 21 0.24
85 68 0.76
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (84 bp):
GTGGAATCAGCACTTAGCAACCACTTTAAATTCAGTGATACGGGGAATCAACACATAACAACCCC
TTTCACAATAAAAGATACA
Found at i:33042367 original size:85 final size:85
Alignment explanation
Indices: 33042157--33042386 Score: 223
Period size: 85 Copynumber: 2.7 Consensus size: 85
33042147 CTCGGTGGAT
* * * * * * *
33042157 TCAGCACTTAGCAAGCA-CTTTA-AATTCAGTGATACGGGGAATGAACACATAACAACCCCTTTC
1 TCAGCACTTAACAACCACCTTTAGAA-TCAATAATACGGGGAATCAGCACATAGCAACCCCTTTC
* * *
33042220 ATAATAAAAGATACCGTGGAA
65 ACAATAAAAGATACAGTAGAA
* * * * *
33042241 TCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCA
1 TCAGCACTTAACAACCACCTTTAGAATCAATAATACGGGGAATCAGCACATAGCAACCCCTTTCA
* *
33042306 CAATCAAATATACAGTAGAA
66 CAATAAAAGATACAGTAGAA
** * * *
33042326 TCAGCACTTAACTGCCACGTTTAGAATCAATAATTTC-GGGAATCAGCACTTAGCAACCCCT
1 TCAGCACTTAACAACCACCTTTAGAATCAATAA-TACGGGGAATCAGCACATAGCAACCCCT
33042387 CGAGAATCTG
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
84 16 0.13
85 104 0.85
86 3 0.02
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (85 bp):
TCAGCACTTAACAACCACCTTTAGAATCAATAATACGGGGAATCAGCACATAGCAACCCCTTTCA
CAATAAAAGATACAGTAGAA
Found at i:33042784 original size:30 final size:29
Alignment explanation
Indices: 33042750--33042811 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
33042740 TCCTTAACTC
33042750 AAACTTTGGCAAAATTACAATTTTTCCTCT
1 AAACTTTGGCAAAATTACAATTTTTCC-CT
* * * *
33042780 AAACTTTTGCATATTTACACTTTTTCCCT
1 AAACTTTGGCAAAATTACAATTTTTCCCT
33042809 AAA
1 AAA
33042812 GCTCAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (29 bp):
AAACTTTGGCAAAATTACAATTTTTCCCT
Found at i:33048161 original size:85 final size:84
Alignment explanation
Indices: 33048011--33048200 Score: 213
Period size: 85 Copynumber: 2.2 Consensus size: 84
33048001 CGGTAGATTT
* * *
33048011 AGCACTTAGCAATCACCTTAAATTCAGTGATACGGGGAATCAGCACATAACAATCCCGTTCACAA
1 AGCACTTAGCAACCACTTTAAATTCAGTGATACGAGGAATCAGCACATAACAATCCCGTTCACAA
* *
33048076 TCAAAGGTATGATGGAATC
66 TCAAAGATACGATGGAATC
* * * * *
33048095 TGCACTTAGCAACCACTTTTATATTCAGTGATACGAGGAATTAGCACATAGCAA-CCTC-TTGTA
1 AGCACTTAGCAACCAC-TTTAAATTCAGTGATACGAGGAATCAGCACATAACAATCC-CGTT-CA
* *
33048158 CAATCAAATATACGGTGGAATC
63 CAATCAAAGATACGATGGAATC
*
33048180 AACACTTAGCAACCACCTTTA
1 AGCACTTAGCAACCA-CTTTA
33048201 GAATCAATAA
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
84 18 0.20
85 69 0.78
86 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (84 bp):
AGCACTTAGCAACCACTTTAAATTCAGTGATACGAGGAATCAGCACATAACAATCCCGTTCACAA
TCAAAGATACGATGGAATC
Found at i:33048192 original size:43 final size:42
Alignment explanation
Indices: 33048097--33048235 Score: 129
Period size: 42 Copynumber: 3.3 Consensus size: 42
33048087 ATGGAATCTG
* * * * * * * *
33048097 CACTTAGCAACCACTTTTATATTCAGTGATACGAGGAATTAG
1 CACTTAGCAACCACCTTTACAATCAATAATACGGGGAATCAA
* *
33048139 CACATAGCAACC-TCTTGTACAATCAA-ATATACGGTGGAATCAA
1 CACTTAGCAACCACCTT-TACAATCAATA-ATACGG-GGAATCAA
* *
33048182 CACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAA
1 CACTTAGCAACCACCTTTACAATCAATAATACGGGGAATCAA
33048224 CACTTAGCAACC
1 CACTTAGCAACC
33048236 CCTCGGGGAA
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.03
42 42 0.54
43 30 0.38
44 4 0.05
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (42 bp):
CACTTAGCAACCACCTTTACAATCAATAATACGGGGAATCAA
Found at i:33048241 original size:26 final size:26
Alignment explanation
Indices: 33048212--33048264 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33048202 AATCAATAAT
33048212 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
** *
33048238 TCGGGGAATCTGCACTTAGCGACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
33048264 T
1 T
33048265 TTTTATCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:33053407 original size:14 final size:15
Alignment explanation
Indices: 33053385--33053461 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
33053375 CAATCAAACA
33053385 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
33053399 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
33053414 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
33053434 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
33053448 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
33053462 ACTGCCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Done.