Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 117 of 199
Found at i:33435069 original size:27 final size:27
Alignment explanation
Indices: 33435019--33435072 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
33435009 ACATAAGGTC
*
33435019 ATAACAGTCATTTCATCTCTTAGGGGT
1 ATAACAGTCATTTCATCCCTTAGGGGT
*
33435046 ATAACAGTCATTTTA-CCCTATAGGGGT
1 ATAACAGTCATTTCATCCCT-TAGGGGT
33435073 TGTCAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
ATAACAGTCATTTCATCCCTTAGGGGT
Found at i:33436470 original size:18 final size:18
Alignment explanation
Indices: 33436444--33436489 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
33436434 GTATAACAAT
*
33436444 ATAAAAATGACAAGGATA
1 ATAATAATGACAAGGATA
* *
33436462 ATAATAATGGCAATGATA
1 ATAATAATGACAAGGATA
33436480 ATAATAATGA
1 ATAATAATGA
33436490 TAATAATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.15, T:0.24
Consensus pattern (18 bp):
ATAATAATGACAAGGATA
Found at i:33436488 original size:12 final size:12
Alignment explanation
Indices: 33436473--33436498 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33436463 TAATAATGGC
33436473 AATGATAATAAT
1 AATGATAATAAT
33436485 AATGATAATAAT
1 AATGATAATAAT
33436497 AA
1 AA
33436499 CCAAAAGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATGATAATAAT
Found at i:33437197 original size:21 final size:22
Alignment explanation
Indices: 33437171--33437215 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
33437161 ATAGAAAATC
*
33437171 AAAAAACTGG-AGAAAGAAAGAA
1 AAAAAAC-GGAAGAAAAAAAGAA
33437193 AAAAAACGGAAGAAAAAAAGAA
1 AAAAAACGGAAGAAAAAAAGAA
33437215 A
1 A
33437216 GATTGAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.02
Consensus pattern (22 bp):
AAAAAACGGAAGAAAAAAAGAA
Found at i:33437727 original size:27 final size:27
Alignment explanation
Indices: 33437681--33437886 Score: 288
Period size: 27 Copynumber: 7.7 Consensus size: 27
33437671 TTTTTTGGTT
* * *
33437681 ATTTTACCCTAT-GGGCTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
**
33437707 ATTTTACTATATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
33437734 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
** * * *
33437761 ATTTTACCCTATAAGGGTATTACGGTT
1 ATTTTACCCTATGGGGGTATTTCGATC
*
33437788 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
*
33437815 ATTTTACCCTATGGGGGTATTTCGACC
1 ATTTTACCCTATGGGGGTATTTCGATC
*
33437842 ATTTTACTCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
33437869 ATTTTACCCTATGGGGGT
1 ATTTTACCCTATGGGGGT
33437887 CTCGGTGCAG
Statistics
Matches: 158, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 10 0.06
27 148 0.94
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGATC
Found at i:33439677 original size:47 final size:47
Alignment explanation
Indices: 33439614--33439707 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
33439604 TTTCTGAGAG
33439614 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
33439661 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
33439708 ACACATAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (47 bp):
CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
Found at i:33441630 original size:13 final size:13
Alignment explanation
Indices: 33441612--33441656 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
33441602 TCTGATACTC
33441612 TGTTTTCAAGATA
1 TGTTTTCAAGATA
33441625 TGTTTTCAAGATA
1 TGTTTTCAAGATA
* *
33441638 TGTTTTTAAGCTA
1 TGTTTTCAAGATA
33441651 TGTTTT
1 TGTTTT
33441657 ATGCATACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (13 bp):
TGTTTTCAAGATA
Found at i:33442142 original size:21 final size:21
Alignment explanation
Indices: 33442116--33442159 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
33442106 AGACTAAGCC
33442116 AAGTTTTTAAGTATGATTTTA
1 AAGTTTTTAAGTATGATTTTA
33442137 AAGTTTTTAAGTATGATTTTA
1 AAGTTTTTAAGTATGATTTTA
33442158 AA
1 AA
33442160 CAAGTACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
AAGTTTTTAAGTATGATTTTA
Found at i:33447661 original size:14 final size:14
Alignment explanation
Indices: 33447644--33447679 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
33447634 TAAAAAAAAG
33447644 AAAAAAAAACCGCA
1 AAAAAAAAACCGCA
*
33447658 AAAAAAAAATCGCA
1 AAAAAAAAACCGCA
33447672 AAAAAAAA
1 AAAAAAAA
33447680 GTTGCCTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.78, C:0.14, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAAAAAAACCGCA
Found at i:33447736 original size:15 final size:15
Alignment explanation
Indices: 33447716--33447749 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33447706 CTTCTTTTCC
33447716 TATTATTGTTATTGT
1 TATTATTGTTATTGT
* *
33447731 TATTATTTTTATTTT
1 TATTATTGTTATTGT
33447746 TATT
1 TATT
33447750 TTTCCCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TATTATTGTTATTGT
Found at i:33462331 original size:5 final size:5
Alignment explanation
Indices: 33462323--33462347 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
33462313 AGATTACATT
33462323 AAATC AAATC AAATC AAATC AAATC
1 AAATC AAATC AAATC AAATC AAATC
33462348 TTTACAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATC
Found at i:33466360 original size:15 final size:15
Alignment explanation
Indices: 33466340--33466370 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33466330 GTTATGTAAG
33466340 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
33466355 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
33466370 T
1 T
33466371 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:33472973 original size:47 final size:47
Alignment explanation
Indices: 33472749--33473247 Score: 701
Period size: 47 Copynumber: 10.4 Consensus size: 47
33472739 CAGCCAAGAG
33472749 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33472796 AGTGTATGTATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
33472845 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
33472896 AGTGTATGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
33472947 AGTGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33472994 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33473041 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33473088 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33473135 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
33473182 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33473229 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
33473248 TCCCGAAAGG
Statistics
Matches: 414, Mismatches: 32, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
47 278 0.67
49 42 0.10
51 90 0.22
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:33473422 original size:37 final size:37
Alignment explanation
Indices: 33473366--33473444 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33473356 CCGAGCTCTA
* * *
33473366 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
33473403 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33473440 AAGAC
1 AAGAC
33473445 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33480903 original size:17 final size:17
Alignment explanation
Indices: 33480881--33480924 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
33480871 TAGGAAATAA
33480881 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
33480898 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
33480915 -ATATGTATAT
1 AAAATGTATAT
33480925 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:33480950 original size:33 final size:33
Alignment explanation
Indices: 33480853--33480959 Score: 86
Period size: 33 Copynumber: 3.4 Consensus size: 33
33480843 AAGTATATAT
* * *
33480853 ATATATGCATATAAAAGTTA-GGAAATA-AAAA
1 ATATATGTATATAAAAGTTATGCAAATAGAATA
* *
33480884 ATGTATATGTATAT-AAA---ATGTAAAT-GTAT-
1 A--TATATGTATATAAAAGTTATGCAAATAGAATA
33480913 ATATATGTATATAAAAGTTATGCAAATAGAATA
1 ATATATGTATATAAAAGTTATGCAAATAGAATA
*
33480946 ATATATATATATAA
1 ATATATGTATATAA
33480960 TATGTGCATG
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
27 11 0.19
28 3 0.05
29 2 0.03
30 6 0.10
31 8 0.14
32 6 0.10
33 23 0.39
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (33 bp):
ATATATGTATATAAAAGTTATGCAAATAGAATA
Found at i:33480951 original size:60 final size:59
Alignment explanation
Indices: 33480835--33480964 Score: 151
Period size: 60 Copynumber: 2.2 Consensus size: 59
33480825 AAAGTAAAAA
* *
33480835 ATATATAAAA-GT--ATATATATATATGCATATAAAAGTTAGGAAATAAAAAATGTATAT
1 ATATATAAAATGTAAATGTATATATATGCATATAAAAGTTAGCAAATAAAAAA-GTATAT
* * *
33480892 GTATATAAAATGTAAATGTATATATATGTATATAAAAGTTATGCAAATAGAATAA-TATAT
1 ATATATAAAATGTAAATGTATATATATGCATATAAAAGTTA-GCAAATA-AAAAAGTATAT
*
33480952 ATATATAATATGT
1 ATATATAAAATGT
33480965 GCATGTGTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
57 9 0.15
58 2 0.03
60 40 0.66
61 6 0.10
62 4 0.07
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (59 bp):
ATATATAAAATGTAAATGTATATATATGCATATAAAAGTTAGCAAATAAAAAAGTATAT
Found at i:33481052 original size:3 final size:3
Alignment explanation
Indices: 33481044--33481082 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
33481034 GTATATATAG
*
33481044 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
33481083 CTTAATAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33481123 original size:21 final size:23
Alignment explanation
Indices: 33481048--33481122 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 23
33481038 ATATAGTAAT
* * *
33481048 AATAATAATAATGATAATAATAAT
1 AATAATAATAAT-TTAATAACAAA
* *
33481072 AATAATAATAACTTAATAACAAG
1 AATAATAATAATTTAATAACAAA
33481095 AA-AATAA-AATTTAATAA-AAA
1 AATAATAATAATTTAATAACAAA
33481115 AATAATAA
1 AATAATAA
33481123 ATAAAAAAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
20 4 0.09
21 14 0.32
22 5 0.11
23 10 0.23
24 11 0.25
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (23 bp):
AATAATAATAATTTAATAACAAA
Found at i:33481431 original size:23 final size:22
Alignment explanation
Indices: 33481384--33481441 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
33481374 AAAGGGTATC
* * *
33481384 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAG
33481405 TACAAAATCATATCTTCTAAGAG
1 TAC-AAATCATATCTTCTAAGAG
*
33481428 TACATATCATATCT
1 TACAAATCATATCT
33481442 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAG
Found at i:33481444 original size:19 final size:20
Alignment explanation
Indices: 33481420--33481467 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
33481410 AATCATATCT
*
33481420 TCTAAGA-GTACATATCATA
1 TCTAAGATGCACATATCATA
*
33481439 TCTAAGATTGCATATATCATA
1 TCTAAGA-TGCACATATCATA
33481460 TCTAAGAT
1 TCTAAGAT
33481468 CATATCTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 1 0.04
21 17 0.68
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTAAGATGCACATATCATA
Found at i:33481487 original size:14 final size:12
Alignment explanation
Indices: 33481454--33481479 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33481444 GATTGCATAT
33481454 ATCATATCTAAG
1 ATCATATCTAAG
33481466 ATCATATCTAAG
1 ATCATATCTAAG
33481478 AT
1 AT
33481480 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:33482327 original size:44 final size:44
Alignment explanation
Indices: 33482264--33482471 Score: 251
Period size: 44 Copynumber: 4.7 Consensus size: 44
33482254 ATCTGCTATT
*
33482264 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* * *
33482308 TTCAACCTATTCCACTGCTGACAAGGGAGATAGGA-CCTACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
* ** * *
33482352 TTCAATCTATTCCACTGCTTCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
33482396 TTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
33482440 TAT-AACCTATTCCACTGCTGACCCGAGAGATA
1 T-TCAACCTATTCCACTGCTGACCAGGGAGATA
33482472 AGGCTGGGGT
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 135 0.97
45 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:33482587 original size:43 final size:43
Alignment explanation
Indices: 33482534--33482674 Score: 140
Period size: 44 Copynumber: 3.2 Consensus size: 43
33482524 TATTTTTAGC
*
33482534 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
1 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
**** * * * * * * *
33482577 CTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTTCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCTTTGAT
33482622 CTGC-TCTGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
1 CTGCTTC-GCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
33482665 CTGCTTCGCT
1 CTGCTTCGCT
33482675 ATTGGTGCAG
Statistics
Matches: 71, Mismatches: 23, Indels: 8
0.70 0.23 0.08
Matches are distributed among these distances:
43 26 0.37
44 28 0.39
45 17 0.24
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (43 bp):
CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
Found at i:33482593 original size:88 final size:88
Alignment explanation
Indices: 33482471--33482702 Score: 385
Period size: 88 Copynumber: 2.6 Consensus size: 88
33482461 CCCGAGAGAT
* * *
33482471 AAGGCTGGGGT-TATTGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCC
1 AAGGCTGGTGTCT-TTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACC
33482535 TGCTCCGCTGCAACCCAGGGAGGC
65 TGCTCCGCTGCAACCCAGGGAGGC
*
33482559 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
*
33482624 GCTCTGCTGCAACCCAGGGAGGC
66 GCTCCGCTGCAACCCAGGGAGGC
* *
33482647 AAGGCTGGTGTCTTTGATCTGCTTCGCTATTGGTGCAGGAAGGCAAGATCTGCTAT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
33482703 CTTCGATCTA
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
88 134 0.99
89 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (88 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
GCTCCGCTGCAACCCAGGGAGGC
Found at i:33482603 original size:44 final size:43
Alignment explanation
Indices: 33482471--33482693 Score: 119
Period size: 44 Copynumber: 5.1 Consensus size: 43
33482461 CCCGAGAGAT
* *
33482471 AAGGCTGGGGT-TATTGATCTGCTTCGCTGTCGGTGCAAGAAGGC
1 AAGGCTGGTGTCT-TTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
33482515 AAGATCTGCTAT-TTTTAGCCTGCTCCGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGA-TCTGCTTCGCTGCGGTGCAGGAAGGC
33482559 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
33482603 AAGATCTGCTATTTTTAACCTGC-TCTGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGATCTGCTTC-GCTGCGGTGCAGGAAGGC
**
33482647 AAGGCTGGTGTCTTTGATCTGCTTCGCTATTGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCT-GCGGTGCAGGAAGGC
33482691 AAG
1 AAG
33482694 ATCTGCTATC
Statistics
Matches: 123, Mismatches: 48, Indels: 16
0.66 0.26 0.09
Matches are distributed among these distances:
43 31 0.25
44 60 0.49
45 32 0.26
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (43 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGCGGTGCAGGAAGGC
Found at i:33482740 original size:44 final size:43
Alignment explanation
Indices: 33482685--33482970 Score: 231
Period size: 44 Copynumber: 6.5 Consensus size: 43
33482675 ATTGGTGCAG
* *
33482685 GAAGGCAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-CGCCAATATAT
* *
33482729 GAAGACAAGATCTGCTTTCTTCGATCTACTT-CGCCACTAGTAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCAATA-TAT
* * *
33482772 GGGAAGACAAGATCCGC-ATCTTCGATCCACTTCCTACCAATATA-
1 --GAAGACAAGATCTGCTATCTTCGATCTACTTCC-GCCAATATAT
* * * *
33482816 GAAAGACATGACCTGCTATCTTCGACCTACTTCACGCCAATACAT
1 G-AAGACAAGATCTGCTATCTTCGATCTACTTC-CGCCAATATAT
* * * * **
33482861 GAAGAAAAGATCTGTTTTCTTTGATCTACTT-CGCCACAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCA-A-TATAT
* * *
33482905 GAAGAAAAGATCTGC-ATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-C-GCCAATATAT
* * *
33482949 GAAGATAGGATCTGTTATCTTC
1 GAAGACAAGATCTGCTATCTTC
33482971 ACTGATCTGC
Statistics
Matches: 193, Mismatches: 34, Indels: 29
0.75 0.13 0.11
Matches are distributed among these distances:
42 13 0.07
43 27 0.14
44 118 0.61
45 27 0.14
46 8 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCAATATAT
Found at i:33482968 original size:132 final size:132
Alignment explanation
Indices: 33482693--33482970 Score: 432
Period size: 132 Copynumber: 2.1 Consensus size: 132
33482683 AGGAAGGCAA
* *
33482693 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
*
33482758 TTCGCCACTAGTATGGGAAGACAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
66 TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
*
33482823 AT
131 AG
* * *
33482825 GACCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGTTTTCTTTGATCTAC
1 GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
* * *
33482890 TTCGCCAC-AGTATGGGAAGAAAAGATCTGCATCTTCGATCTACTTCACTACCAATATAGGAAGA
66 TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTC-CTACCAATATAGAAAGA
*
33482954 TAG
130 CAG
*
33482957 GATCTGTTATCTTC
1 GATCTGCTATCTTC
33482971 ACTGATCTGC
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 35 0.27
132 97 0.73
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
AG
Found at i:33488022 original size:22 final size:21
Alignment explanation
Indices: 33487991--33488031 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
33487981 AATGGCATAG
33487991 AAATAATATAAACAAACAAAT
1 AAATAATATAAACAAACAAAT
*
33488012 AAATAAATATAAATAAACAA
1 AAAT-AATATAAACAAACAA
33488032 TAACATGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
AAATAATATAAACAAACAAAT
Found at i:33488420 original size:17 final size:17
Alignment explanation
Indices: 33488398--33488441 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
33488388 TAGGAAATAA
33488398 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
33488415 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
33488432 -ATATGTATAT
1 AAAATGTATAT
33488442 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:33488474 original size:60 final size:58
Alignment explanation
Indices: 33488367--33488481 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 58
33488357 TATAAAAGTA
* * *
33488367 TATATATATGCATATAAAAGTTAGGAAATAAAAAATGTATATGTATATAAAATGTAAATG
1 TATATATATGCATATAAAAGTTAGCAAATAAAAAA--TAAATATATATAAAATGTAAATG
* *
33488427 TATATATATGTATATAAAAGTTATGCAAATAGAATAAA-AAATATATATAATATGT
1 TATATATATGCATATAAAAGTTA-GCAAATA-AA-AAATAAATATATATAAAATGT
33488482 GCATGTGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
60 36 0.77
61 6 0.13
62 2 0.04
63 3 0.06
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (58 bp):
TATATATATGCATATAAAAGTTAGCAAATAAAAAATAAATATATATAAAATGTAAATG
Found at i:33488569 original size:3 final size:3
Alignment explanation
Indices: 33488561--33488614 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
33488551 GTATATATAG
*
33488561 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
33488609 TAA TAA
1 TAA TAA
33488615 CTTAATAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33488956 original size:23 final size:22
Alignment explanation
Indices: 33488913--33488970 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
33488903 AAAGGGTATC
* *
33488913 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
33488934 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
33488957 TGCATATCATATCT
1 TACAAATCATATCT
33488971 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:33488973 original size:19 final size:20
Alignment explanation
Indices: 33488926--33488996 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
33488916 AAATTAAATC
* *
33488926 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
33488946 TCTTCTAAGATTGC-ATATCATA
1 ---TCTAAGATTGCAATATCATA
33488968 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
*
33488989 TATAAGAT
1 TCTAAGAT
33488997 CATATCTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 11 0.26
21 15 0.35
22 7 0.16
23 10 0.23
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:33499886 original size:18 final size:18
Alignment explanation
Indices: 33499863--33499910 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
33499853 ATTTGTGTTA
*
33499863 TTTTACTTCCTTTATCCT
1 TTTTACTTCCTTTATCAT
*
33499881 TTTTACTTCATTTATCAT
1 TTTTACTTCCTTTATCAT
33499899 TTTTACTTCCTT
1 TTTTACTTCCTT
33499911 ACTCGCGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTACTTCCTTTATCAT
Found at i:33499946 original size:34 final size:34
Alignment explanation
Indices: 33499905--33499981 Score: 127
Period size: 34 Copynumber: 2.3 Consensus size: 34
33499895 TCATTTTTAC
* *
33499905 TTCCTTACTCGCGGTTACTTGCCTTTTGCAAGCA
1 TTCCTTACTCACGGTTACCTGCCTTTTGCAAGCA
*
33499939 TTCCTTACTCATGGTTACCTGCCTTTTGCAAGCA
1 TTCCTTACTCACGGTTACCTGCCTTTTGCAAGCA
33499973 TTCCTTACT
1 TTCCTTACT
33499982 TTCTAAGTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.16, C:0.30, G:0.14, T:0.40
Consensus pattern (34 bp):
TTCCTTACTCACGGTTACCTGCCTTTTGCAAGCA
Found at i:33515760 original size:15 final size:15
Alignment explanation
Indices: 33515740--33515794 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
33515730 ACTCTCCTCA
*
33515740 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
33515755 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
33515770 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
33515784 TTCTTTT-TCTC
1 TTCTTTTCTCTC
33515795 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:33520612 original size:22 final size:22
Alignment explanation
Indices: 33520587--33520628 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
33520577 GTTTTTGAAG
33520587 TTTTAATTTTATTTTTCAATAC
1 TTTTAATTTTATTTTTCAATAC
*
33520609 TTTTATTTTTATTTTTCAAT
1 TTTTAATTTTATTTTTCAAT
33520629 GATTACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTAATTTTATTTTTCAATAC
Found at i:33523539 original size:107 final size:107
Alignment explanation
Indices: 33523353--33523566 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
33523343 TCTGTCCAAG
33523353 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
1 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
33523418 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
66 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
33523460 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
1 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
33523525 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
66 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
33523567 TCAACCTCAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (107 bp):
AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
Found at i:33525409 original size:20 final size:20
Alignment explanation
Indices: 33525384--33525431 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
33525374 GCTAGGGTAG
33525384 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
33525404 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
33525424 GAAAAATA
1 GAAAAATA
33525432 AAATAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27
Consensus pattern (20 bp):
GAAAAATATACTTAAAGGTT
Found at i:33525438 original size:19 final size:20
Alignment explanation
Indices: 33525384--33525438 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
33525374 GCTAGGGTAG
**
33525384 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
**
33525404 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
33525424 GAAAAATA-AAATAAA
1 GAAAAATATAAATAAA
33525439 AAGTTGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.58, C:0.04, G:0.13, T:0.25
Consensus pattern (20 bp):
GAAAAATATAAATAAAGGTT
Found at i:33525444 original size:20 final size:20
Alignment explanation
Indices: 33525401--33525444 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
33525391 ATACTTAAAG
* * * *
33525401 GTTGAAAAATATACTTAAAG
1 GTTGAAAAATAAAATAAAAA
33525421 GTTGAAAAATAAAATAAAAA
1 GTTGAAAAATAAAATAAAAA
33525441 GTTG
1 GTTG
33525445 TATTTATACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (20 bp):
GTTGAAAAATAAAATAAAAA
Found at i:33530883 original size:79 final size:81
Alignment explanation
Indices: 33530780--33530964 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
33530770 GCTACTCGTT
* * * *
33530780 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTTGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
33530843 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
33530860 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
33530924 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
33530940 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTTGGGACTTAGCCCGGA
33530965 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:33530964 original size:40 final size:40
Alignment explanation
Indices: 33530761--33530964 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
33530751 CGGAATTTAA
** * *
33530761 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTTGGGACTTAGC
* * * *
33530801 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
*
33530841 CCGGATTTAGTAACTCGCACAAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
* * *
33530880 CCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTTGGGA-CTTAGC
* * *
33530920 CCGGATATGGTCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTTGGGACTTAGC
33530960 CCGGA
1 CCGGA
33530965 CATCATTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 88 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
Found at i:33537143 original size:23 final size:23
Alignment explanation
Indices: 33537117--33537189 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
33537107 AGTGCCACAT
* *
33537117 TGATCTGTAGCCGAAGTTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
33537140 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
33537163 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
33537186 TGAT
1 TGAT
33537190 CAATAACACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:33537289 original size:8 final size:8
Alignment explanation
Indices: 33537276--33537304 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
33537266 ACCCGGGACT
33537276 CACTGTAA
1 CACTGTAA
33537284 CACTGTAA
1 CACTGTAA
33537292 CACTGTAA
1 CACTGTAA
33537300 CACTG
1 CACTG
33537305 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:33537449 original size:18 final size:17
Alignment explanation
Indices: 33537423--33537461 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
33537413 ATTTTCCTTC
33537423 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
33537440 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
33537458 CACA
1 CACA
33537462 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:33549002 original size:81 final size:81
Alignment explanation
Indices: 33548890--33549156 Score: 356
Period size: 81 Copynumber: 3.3 Consensus size: 81
33548880 TAAAATAAAA
* * * *
33548890 AAATACCC-CTATAGGGTAAAATGACCAAAATACCCCCATAAGGTAAAATGATCGAAATACCCCA
1 AAATACCCTC-ATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCC
* *
33548954 ATAAGGTAAAATGACTG
65 ATAGGGTAAAATGATTG
* * * * * *
33548971 AAATACACTCATAGGGTAACATGACTGAAATACCCCCATAGGGTAGAATGAGCGGAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
* *
33549036 TAGGGTAGACTGATTG
66 TAGGGTAAAATGATTG
* * *
33549052 AAATACCCTCATAGGGTAGAATGACCGAAATACCCCCATACGGTAGACTGACCGAAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
33549117 TAGGGTAAAATGATTG
66 TAGGGTAAAATGATTG
*
33549133 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCTCATAGGGTAAAATGA
33549157 TTGTTATACC
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 159 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (81 bp):
AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
TAGGGTAAAATGATTG
Found at i:33549166 original size:27 final size:27
Alignment explanation
Indices: 33548890--33549156 Score: 309
Period size: 27 Copynumber: 9.9 Consensus size: 27
33548880 TAAAATAAAA
* *
33548890 AAATACCCCTATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
33548917 AAATACCCCCATAAGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
33548944 AAATACCCCAATAAGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
33548971 AAATACACTCATAGGGTAACATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
33548998 AAATACCCCCATAGGGTAGAATGAGCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * **
33549025 GAATACCCCCATAGGGTAGACTGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
33549052 AAATACCCTCATAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
33549079 AAATACCCCCATACGGTAGACTGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
**
33549106 AAATACCCCCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
33549133 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
33549157 TTGTTATACC
Statistics
Matches: 205, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 205 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:33555425 original size:146 final size:146
Alignment explanation
Indices: 33555161--33555452 Score: 489
Period size: 146 Copynumber: 2.0 Consensus size: 146
33555151 CCACATGAGC
33555161 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
1 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
* *
33555226 TATCTGAGTCACTAGAGCTGACTACGGACCTTTCGAGAGGTCCATATCTACACCTAGACCCCAAA
66 TACCTGAGTCACTAGAGCTGACTACGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCAAA
33555291 ATAGGTAAAATGACAA
131 ATAGGTAAAATGACAA
*
33555307 GTGTGGGCCCACTTGGGCCGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
1 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
* * * *
33555372 TACCTGAGTCGCTCGAGGC-GAC-ACCGGACCTTTCAAGAGGTCGATATTTACACCTAGACCCCA
66 TACCTGAGTCACTAGA-GCTGACTA-CGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCA
33555435 AAATAGGTAAAATGACAA
129 AAATAGGTAAAATGACAA
33555453 AAATACCCCC
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
145 1 0.01
146 134 0.98
147 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (146 bp):
GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
TACCTGAGTCACTAGAGCTGACTACGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCAAA
ATAGGTAAAATGACAA
Found at i:33555471 original size:27 final size:27
Alignment explanation
Indices: 33555440--33555929 Score: 473
Period size: 27 Copynumber: 18.3 Consensus size: 27
33555430 CCCCAAAATA
**
33555440 GGTAAAATGACAAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555467 GGTAAAATGACCAAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
33555494 GGTAAAATGACTGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* **
33555521 GGTAAAATGACTGAAATACGTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
***
33555548 GGT-AAATGATTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555574 GGTAGAATAACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * **
33555601 GGCAGAATGGTCGAAATA-CCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555627 GATAGAATAACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
33555654 GGTAGAATGACCGAAATACCCCCATTG
1 GGTAAAATGACCGAAATACCCCCATAG
* ***
33555681 GGTAGAATGACCGAAATATTACCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555708 GGTAAAATGATCGAAATACGCCCAAAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555735 GGTAAAATGATCAAAATACTCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
33555762 GGTAGAATAATCGAAATA-CCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
33555788 GGTAGAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
33555815 GGTAGAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** * *
33555842 GGTAAAATAACTAAAATAGCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** * *
33555869 GGTAAAATGACTAAAATACACCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
33555896 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
33555923 GGTAAAA
1 GGTAAAA
33555930 GGACTGTTAT
Statistics
Matches: 392, Mismatches: 68, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 64 0.16
27 328 0.84
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:33555663 original size:107 final size:107
Alignment explanation
Indices: 33555440--33555929 Score: 502
Period size: 107 Copynumber: 4.6 Consensus size: 107
33555430 CCCCAAAATA
* * * * *
33555440 GGTAAAATGACAAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGA-
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * ** **
33555504 CTGAAATACCCCCATAAGGTAAAATGACTGAAATACGTCCATAG
66 C-GAAATA-CCCCATAGGGTAAAATAACCAAAATACCCCCATAG
** * * * *
33555548 GGTA-AATGATTAAAATACCCCCATAGGGTAGAATAACCGAAATACCCTCATAGGGCAGAATGGT
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * *
33555612 CGAAATACCCCATAGGATAGAATAACCGAAATACCCCCATAG
66 CGAAATACCCCATAGGGTAAAATAACCAAAATACCCCCATAG
* * **
33555654 GGTAGAATGACCGAAATACCCCCATTGGGTAGAATGACCGAAATATTAC-CATAGGGTAAAATGA
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATA-CCCTCATAGGGTAAAATGA
* * * *
33555718 TCGAAATACGCCCAAAGGGTAAAATGATCAAAATACTCCCATAG
65 TCGAAATAC-CCCATAGGGTAAAATAACCAAAATACCCCCATAG
* * * * * *
33555762 GGTAGAATAATCGAAATA-CCCTATAGGGTAGAATGACCGAAATACCCTCATAGGGTAGAATGAC
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * * *
33555826 CAAAATACCCCTATAGGGTAAAATAACTAAAATAGCCCTATAG
66 CGAAATACCCC-ATAGGGTAAAATAACCAAAATACCCCCATAG
* * * * * * *
33555869 GGTAAAATGACTAAAATACACCAATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAA
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAA
33555930 GGACTGTTAT
Statistics
Matches: 315, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
106 36 0.11
107 194 0.62
108 85 0.27
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (107 bp):
GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
CGAAATACCCCATAGGGTAAAATAACCAAAATACCCCCATAG
Found at i:33557915 original size:25 final size:26
Alignment explanation
Indices: 33557882--33557934 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
33557872 AAAAGGAATG
33557882 CATTAAAAAAATCAATTTTTATGTGA
1 CATTAAAAAAATCAATTTTTATGTGA
***
33557908 CATT-AAAAAATTGTTTTTTATGTGA
1 CATTAAAAAAATCAATTTTTATGTGA
33557933 CA
1 CA
33557935 ATTTTTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (26 bp):
CATTAAAAAAATCAATTTTTATGTGA
Found at i:33558071 original size:7 final size:6
Alignment explanation
Indices: 33558033--33558063 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
33558023 ATATTCTAAA
33558033 TATTTT TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT TATTTT T
33558064 TTAATTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:33565044 original size:33 final size:33
Alignment explanation
Indices: 33565007--33565073 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
33564997 TACATTTGAG
*
33565007 GCCAATTTGACTAAGTGACGAACGGAACTACAA
1 GCCAATTTGACTAAGTGACGAACAGAACTACAA
*
33565040 GCCAATTTGACTAAGTGTCGAACAGAACTACAA
1 GCCAATTTGACTAAGTGACGAACAGAACTACAA
33565073 G
1 G
33565074 AGAACATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (33 bp):
GCCAATTTGACTAAGTGACGAACAGAACTACAA
Found at i:33566416 original size:14 final size:14
Alignment explanation
Indices: 33566397--33566425 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
33566387 ACCTTGTGGA
33566397 CTCTCTTGATTTGC
1 CTCTCTTGATTTGC
33566411 CTCTCTTGATTTGC
1 CTCTCTTGATTTGC
33566425 C
1 C
33566426 ATGTAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.31, G:0.14, T:0.48
Consensus pattern (14 bp):
CTCTCTTGATTTGC
Found at i:33572951 original size:28 final size:28
Alignment explanation
Indices: 33572889--33572952 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
33572879 AAAATTCAAT
33572889 GGCCATATTGCAACGATCAGATTCCAAC
1 GGCCATATTGCAACGATCAGATTCCAAC
* * * *
33572917 AGTCATATTGTAACGATCAGATTCTAAC
1 GGCCATATTGCAACGATCAGATTCCAAC
33572945 GGCCATAT
1 GGCCATAT
33572953 CATTGGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (28 bp):
GGCCATATTGCAACGATCAGATTCCAAC
Found at i:33593449 original size:12 final size:13
Alignment explanation
Indices: 33593432--33593460 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
33593422 CTCATGCATG
33593432 AATAAATAAA-GC
1 AATAAATAAATGC
33593444 AATAAATAAATGC
1 AATAAATAAATGC
33593457 AATA
1 AATA
33593461 GTTATTCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:33595114 original size:24 final size:23
Alignment explanation
Indices: 33595087--33595143 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
33595077 GTACGATGAG
33595087 AAATAAAAAAAATCTAAAAAAACT
1 AAATAAAAAAAATCT-AAAAAACT
** *
33595111 AAATAACTAAAATCTAAATAACT
1 AAATAAAAAAAATCTAAAAAACT
33595134 AAATAAAAAA
1 AAATAAAAAA
33595144 CTAAAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (23 bp):
AAATAAAAAAAATCTAAAAAACT
Found at i:33595118 original size:8 final size:8
Alignment explanation
Indices: 33595107--33595139 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
33595097 AATCTAAAAA
33595107 AACTAAAT
1 AACTAAAT
33595115 AACTAAA-
1 AACTAAAT
*
33595122 ATCTAAAT
1 AACTAAAT
33595130 AACTAAAT
1 AACTAAAT
33595138 AA
1 AA
33595140 AAAACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AACTAAAT
Found at i:33595137 original size:23 final size:24
Alignment explanation
Indices: 33595095--33595169 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 24
33595085 AGAAATAAAA
33595095 AAAATCTAAAAAAACTAAATAACT
1 AAAATCTAAAAAAACTAAATAACT
* *
33595119 AAAATCTAAATAACTAAATAAAAAACT
1 AAAATCTAAA-AA--AACTAAATAACT
*
33595146 AAAAT-T-AAAACACT-AATAACT
1 AAAATCTAAAAAAACTAAATAACT
33595167 AAA
1 AAA
33595170 TAAAATCGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 9 0.21
22 2 0.05
24 12 0.28
25 4 0.09
26 1 0.02
27 15 0.35
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (24 bp):
AAAATCTAAAAAAACTAAATAACT
Found at i:33603158 original size:3 final size:3
Alignment explanation
Indices: 33603145--33603174 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
33603135 TAGCTATGAA
*
33603145 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
33603175 TTTTCATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:33603779 original size:16 final size:16
Alignment explanation
Indices: 33603738--33603776 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
33603728 TTATTTGTTT
33603738 ATTAAAT-TAAT--TA
1 ATTAAATATAATAATA
33603751 ATTAAATATAATAATA
1 ATTAAATATAATAATA
33603767 ATTAAA-ATAA
1 ATTAAATATAA
33603777 ATATCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 4 0.17
16 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTAAATATAATAATA
Found at i:33603900 original size:14 final size:17
Alignment explanation
Indices: 33603881--33603918 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
33603871 ATTTATTTCT
33603881 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
33603895 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
33603912 TAATATA
1 TAATATA
33603919 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:33603936 original size:11 final size:11
Alignment explanation
Indices: 33603898--33603936 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
33603888 ATATTTATAA
33603898 TATAATTAATT
1 TATAATTAATT
*
33603909 TAATAATATACTT
1 T-ATAAT-TAATT
33603922 TATAATTAATT
1 TATAATTAATT
33603933 TATA
1 TATA
33603937 TATTTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 10 0.42
13 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATTAATT
Found at i:33605362 original size:6 final size:6
Alignment explanation
Indices: 33605351--33605392 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
33605341 GGTTAGTTTA
**
33605351 ATTTTT ATTTTT ATTTTT -CCTTT ATTTTT ATTTTAT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTTT
33605393 CTCTTTCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 3 0.10
6 21 0.70
7 6 0.20
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:33605379 original size:24 final size:25
Alignment explanation
Indices: 33605351--33605398 Score: 82
Period size: 23 Copynumber: 2.0 Consensus size: 25
33605341 GGTTAGTTTA
33605351 ATTTTTATTTT-TATTTTTC-CTTT
1 ATTTTTATTTTATATTTTTCTCTTT
33605374 ATTTTTATTTTATATTTTTCTCTTT
1 ATTTTTATTTTATATTTTTCTCTTT
33605399 CCCAAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 11 0.48
24 8 0.35
25 4 0.17
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (25 bp):
ATTTTTATTTTATATTTTTCTCTTT
Found at i:33606786 original size:18 final size:20
Alignment explanation
Indices: 33606747--33606786 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
33606737 ATAGACTATC
33606747 TTTTAATTATCGGTTATATA
1 TTTTAATTATCGGTTATATA
*
33606767 TTTTAATTCT-GGTT-TATA
1 TTTTAATTATCGGTTATATA
33606785 TT
1 TT
33606787 GAGAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTAATTATCGGTTATATA
Found at i:33610090 original size:87 final size:87
Alignment explanation
Indices: 33609944--33610545 Score: 866
Period size: 87 Copynumber: 6.9 Consensus size: 87
33609934 ACTTCAATCT
* *
33609944 GCTCCACTGCAACCGATGGAGGCAAGGCCTT-GTTTTCGATCTACTTTGCTGTTAATGCAGGAAG
1 GCTCCACTGCAACCGATGGAGGCAAGG-CTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
* *
33610008 ACAAGATCTGCTATCTTTAATCA
65 GCAAGATCTGCTATCTTTAACCA
* * * *
33610031 GCTCCACTACATCCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCACTATTAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* *
33610096 CAAGATCTGCTATCTTCAACCG
66 CAAGATCTGCTATCTTTAACCA
* * * *
33610118 GCTCTATTGAAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAATG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
33610183 AAAGATCTGCTATCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
** * ** *
33610205 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTTTATTTGCTTCATTGTTAATGTAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
33610270 CAAGATCTGCTATCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
* *
33610292 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCACTGTTAATGCAAGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* *
33610357 CAAGATCTACTATCTTTGACCA
66 CAAGATCTGCTATCTTTAACCA
* * *
33610379 GCTCCACTGCAACTGATGGAGGCAAGGCTTCGTTTTCGATCTACTTTGCTGTTAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
33610444 CAAGATCTACT-TCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
* * * * *
33610465 GCTCCACTACAACCGATGGAGGCAAGACTTTGTTTTTGATCTGCTTCGCTGTCAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
33610530 CAAGATCTGTTATCTT
66 CAAGATCTGCTATCTT
33610546 CACTGATTTG
Statistics
Matches: 457, Mismatches: 56, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
86 78 0.17
87 379 0.83
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (87 bp):
GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
CAAGATCTGCTATCTTTAACCA
Found at i:33610404 original size:44 final size:44
Alignment explanation
Indices: 33610267--33610404 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 44
33610257 TAATGTAGGA
* * *
33610267 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
* * * * * * * * *
33610311 AGGCAAG-GCTTCGT-T-TTCGATCTGCTTCACTGTTAA-TGCAAGA
1 AGGCAAGATCTAC-TATCTTTGACCAGCTCCACTG-CAACTG-ATGG
33610354 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
1 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
33610398 AGGCAAG
1 AGGCAAG
33610405 GCTTCGTTTT
Statistics
Matches: 67, Mismatches: 20, Indels: 14
0.66 0.20 0.14
Matches are distributed among these distances:
42 13 0.19
43 16 0.24
44 23 0.34
45 15 0.22
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
Found at i:33611787 original size:7 final size:7
Alignment explanation
Indices: 33611777--33611830 Score: 85
Period size: 7 Copynumber: 8.0 Consensus size: 7
33611767 TTTTACTTTT
33611777 TCATTTC
1 TCATTTC
33611784 TCATTTC
1 TCATTTC
33611791 TCATTTC
1 TCATTTC
33611798 TCATTTC
1 TCATTTC
*
33611805 CCATTTC
1 TCATTTC
33611812 TCATTT-
1 TCATTTC
33611818 TCATTT-
1 TCATTTC
33611824 TCATTTC
1 TCATTTC
33611831 ATTTTTTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
6 12 0.27
7 32 0.73
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (7 bp):
TCATTTC
Found at i:33612817 original size:41 final size:41
Alignment explanation
Indices: 33612737--33612814 Score: 131
Period size: 40 Copynumber: 1.9 Consensus size: 41
33612727 TCATTTTCAT
33612737 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
1 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
* *
33612778 TTTGATTTTGA-TTTTGATTTTTGTTTTTCTTCTTTTT
1 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTT
33612815 TGAATTGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 25 0.71
41 10 0.29
ACGTcount: A:0.09, C:0.09, G:0.10, T:0.72
Consensus pattern (41 bp):
TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
Found at i:33622139 original size:6 final size:6
Alignment explanation
Indices: 33622130--33622299 Score: 187
Period size: 6 Copynumber: 27.8 Consensus size: 6
33622120 TTTAATTTGA
* * *
33622130 ATTTTT ATTTTT ATTTTT ACTTTT ATTTTT ATTTTT ATTTTC ATTTTC
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
* * * * * * * *
33622178 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
* * *
33622226 ATTTTC ATTTTC ATTTTC ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
33622274 ATTTTTTT ATTTTT ATTTTAT ATTTT
1 A--TTTTT ATTTTT ATTTT-T ATTTT
33622300 AAAATTTTCT
Statistics
Matches: 157, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
6 145 0.92
7 6 0.04
8 6 0.04
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (6 bp):
ATTTTT
Found at i:33623481 original size:29 final size:29
Alignment explanation
Indices: 33623223--33623480 Score: 196
Period size: 29 Copynumber: 8.9 Consensus size: 29
33623213 TCATCGATCA
* **
33623223 ATGAAAAGGGATAGTTTTGACCATCAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* *
33623252 ATGAAAAGGGATGGTGATGACCATCATAC-
1 ATGAAAAGGGATGGTTACGACCATCA-ACT
* * * *
33623281 ATTGAAAA-GGATAGTTTCGACTATCGACT
1 A-TGAAAAGGGATGGTTACGACCATCAACT
* ** * *
33623310 ATGAAAAGGGATAGTTTTGACTATTAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * * * * *
33623339 ATGAAAATGGATAGTTTCGACTATCGATT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * *
33623368 ATAAAAAGGAATGGTCACGACCATCAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * *
33623397 ATGGAAAGGGATGGTGACGACCATCAATT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * * **
33623426 AATGGAAAGGGATGGTGACAACCATCGGCT
1 -ATGAAAAGGGATGGTTACGACCATCAACT
33623456 ATGAAAAGGGATGGTTACGACCATC
1 ATGAAAAGGGATGGTTACGACCATC
33623481 GTTAGTACAC
Statistics
Matches: 186, Mismatches: 38, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
28 8 0.04
29 145 0.78
30 33 0.18
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTACGACCATCAACT
Found at i:33636887 original size:120 final size:120
Alignment explanation
Indices: 33636733--33637220 Score: 842
Period size: 120 Copynumber: 4.1 Consensus size: 120
33636723 TTCAAATTTT
33636733 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
* *
33636798 TAATATTAAGAATTTTATTAAATTATATATTTTTATTGAATTATATTTAAAAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
33636853 ATTAATTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC---TAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
*
33636915 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATA
*
33636972 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
33637037 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
* *
33637092 ATTATTTTAAATTATATTTTTTAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
*
33637157 TAATATTAACAATTTTATTAAATTATATA-TTTT-TTAAATTATATTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
33637210 ATTATGTTAAA
1 ATTATTTTAAA
33637221 ATATGATTAA
Statistics
Matches: 352, Mismatches: 11, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
117 53 0.15
118 30 0.09
119 64 0.18
120 151 0.43
122 54 0.15
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (120 bp):
ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
Found at i:33636948 original size:18 final size:17
Alignment explanation
Indices: 33636927--33636964 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
33636917 ATATTAAGAA
*
33636927 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
33636945 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
33636962 TTT
1 TTT
33636965 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:33637195 original size:16 final size:17
Alignment explanation
Indices: 33637048--33637200 Score: 65
Period size: 16 Copynumber: 9.0 Consensus size: 17
33637038 AATATTAAGA
33637048 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
33637065 ATTTTTATTAAA-T-TAT
1 A-TTTTATTAAATTATAT
*
33637081 A-TTTAAT-AA-TA-AT
1 ATTTTATTAAATTATAT
*
33637094 -TATT-TTAAATTATAT
1 ATTTTATTAAATTATAT
* * *
33637109 TTTTTAGTATTATATATTAT
1 ATTTTATTA-AAT-TA-TAT
33637129 GATTTTATTAAATTCATAT
1 -ATTTTATTAAATT-ATAT
*** *
33637148 AAGAATATTTAATATTA-ACA
1 -ATTTTA-TTAA-ATTATA-T
33637168 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
33637185 ATTTT-TTAAATTATAT
1 ATTTTATTAAATTATAT
33637201 TTAATAATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 35
0.66 0.12 0.23
Matches are distributed among these distances:
12 1 0.01
13 9 0.09
14 7 0.07
15 2 0.02
16 18 0.18
17 13 0.13
18 17 0.17
19 13 0.13
20 11 0.11
21 10 0.10
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:33637441 original size:45 final size:44
Alignment explanation
Indices: 33637358--33637453 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 44
33637348 ATTACAACAT
*
33637358 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
*
33637402 CATTACATTCAACCAAACA-ATTGAATTACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACGCCTCTATTC
33637447 CATTACA
1 CATTACA
33637454 GCTCTATTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.44
45 26 0.54
ACGTcount: A:0.36, C:0.29, G:0.04, T:0.30
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
Found at i:33637458 original size:16 final size:16
Alignment explanation
Indices: 33637439--33637503 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
33637429 ACTATTACGC
33637439 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
*
33637455 CTCTATTCCATTACAC
1 CTCTATTCCATTACAG
33637471 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
33637487 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
33637503 C
1 C
33637504 GAACCAAACG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.25, C:0.34, G:0.05, T:0.37
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:33642251 original size:101 final size:100
Alignment explanation
Indices: 33641995--33642386 Score: 500
Period size: 101 Copynumber: 3.9 Consensus size: 100
33641985 ATTTGGCTAA
33641995 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCACGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGAT---GAGAGGTCCC
* * * ** *
33642060 ATGTAAGACCATATTTGGGACATGGTGTTGGCACCGAGATG
60 ACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* *
33642101 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATGAGAGGTCCCCCGTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATGAGAGGTCCCACGTA
*
33642165 AGACCATGTCTGGGACATGGCATGGGCACCGATATG
65 AGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * *
33642201 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTA
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTA
33642266 AGACCATGTCTGGGACATGGCATGGGCACC-AGATG
65 AGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* ** * * ** * *
33642301 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCTCATGTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGGTCCCACGTA
33642366 AGACCATGTCTGGGACATGGC
65 AGACCATGTCTGGGACATGGC
33642387 TTTGGCATGT
Statistics
Matches: 257, Mismatches: 25, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
99 43 0.17
100 79 0.31
101 88 0.34
103 5 0.02
105 3 0.01
106 39 0.15
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.20
Consensus pattern (100 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCACGTAA
GACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:33642373 original size:150 final size:151
Alignment explanation
Indices: 33642006--33642393 Score: 591
Period size: 150 Copynumber: 2.5 Consensus size: 151
33641996 GAGATCCCAT
* * * **
33642006 GTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCACGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GATATGA-GA-ACATCCCATGTAAGACCA
* * * *
33642071 TATTTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGA
61 TGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGA
*
33642136 GTTGGCACCGAGATGAGAGGTCCCCC
126 GTGGGCACCGAGATGAGAGGTCCCCC
33642162 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCCCATGTAAGACCATGTCT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCCCATGTAAGACCATGTCT
*
33642227 GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGG
66 GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGG-AGTGG
33642291 GCACC-AGATGAGAGGTCCCCC
130 GCACCGAGATGAGAGGTCCCCC
*
33642312 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCTCATGTAAGACCATGTCT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCCCATGTAAGACCATGTCT
*
33642377 GGGACATGGCTTTGGCA
66 GGGACATGGCGTTGGCA
33642394 TGTTATGATC
Statistics
Matches: 218, Mismatches: 13, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
150 96 0.44
151 82 0.38
152 3 0.01
153 5 0.02
155 2 0.01
156 30 0.14
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (151 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCCCATGTAAGACCATGTCT
GGGACATGGCGTTGGCACCGAGATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGAGTGGG
CACCGAGATGAGAGGTCCCCC
Found at i:33642401 original size:50 final size:50
Alignment explanation
Indices: 33641995--33642393 Score: 496
Period size: 50 Copynumber: 7.8 Consensus size: 50
33641985 ATTTGGCTAA
*
33641995 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGAT---G
* * **
33642051 AGAGGTCCCATGTAAGACCATATTTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
33642101 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATG
** * *
33642151 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
33642201 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
33642252 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC-AGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
33642301 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
33642351 AGAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
33642394 TGTTATGATC
Statistics
Matches: 305, Mismatches: 33, Indels: 15
0.86 0.09 0.04
Matches are distributed among these distances:
49 49 0.16
50 135 0.44
51 77 0.25
53 5 0.02
55 2 0.01
56 37 0.12
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:33643742 original size:12 final size:12
Alignment explanation
Indices: 33643725--33643754 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
33643715 CCTCACACGC
33643725 CCGTGTGCTAGG
1 CCGTGTGCTAGG
33643737 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
33643749 CTGTGT
1 CCGTGT
33643755 AACTGTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:33644644 original size:21 final size:21
Alignment explanation
Indices: 33644615--33644674 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
33644605 CAAACACGCC
*
33644615 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
*
33644636 AACAAAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
33644657 AACAGAAGCTCAAAAGAG
1 AACAGAAGCTCATAAGAG
33644675 TCGATCCACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:33647503 original size:2 final size:2
Alignment explanation
Indices: 33647496--33647522 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
33647486 TTGTTTTCAT
33647496 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
33647523 GTTTAGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33648720 original size:14 final size:14
Alignment explanation
Indices: 33648697--33648731 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33648687 TGGACATGGT
*
33648697 TAATGTCATGCCAG
1 TAATGCCATGCCAG
*
33648711 TAATGCCATGCTAG
1 TAATGCCATGCCAG
33648725 TAATGCC
1 TAATGCC
33648732 TTGTACATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (14 bp):
TAATGCCATGCCAG
Found at i:33648924 original size:8 final size:8
Alignment explanation
Indices: 33648911--33648938 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
33648901 TCTATACTCT
33648911 AAATCGAC
1 AAATCGAC
33648919 AAATCGAC
1 AAATCGAC
33648927 AAATCGAC
1 AAATCGAC
33648935 AAAT
1 AAAT
33648939 AGGGGTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.11, T:0.14
Consensus pattern (8 bp):
AAATCGAC
Found at i:33652720 original size:13 final size:13
Alignment explanation
Indices: 33652680--33652744 Score: 70
Period size: 13 Copynumber: 5.5 Consensus size: 13
33652670 CGATTTTTCT
33652680 TAAATATTATCAC
1 TAAATATTATCAC
*
33652693 TACATA--ATC-C
1 TAAATATTATCAC
33652703 TAAATATTATCAC
1 TAAATATTATCAC
*
33652716 TAAATA--AT-TC
1 TAAATATTATCAC
33652726 TAAATATTATCAC
1 TAAATATTATCAC
33652739 TAAATA
1 TAAATA
33652745 ATTCAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 13 0.31
11 5 0.12
12 5 0.12
13 19 0.45
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:33652747 original size:23 final size:23
Alignment explanation
Indices: 33652680--33652753 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
33652670 CGATTTTTCT
* *
33652680 TAAATATTATCACTACATAATCC
1 TAAATATTATCACTAAATAATTC
33652703 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
33652726 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
33652749 AAAAT
1 TAAAT
33652754 TTAAAAATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:33653605 original size:30 final size:30
Alignment explanation
Indices: 33653544--33653605 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
33653534 TTTAACGGTC
* *
33653544 ATATTACAACGGTTAGATTCCAATGTTCAT
1 ATATTACAACAGTTAGATTCCAATGTCCAT
*
33653574 ATATTGCAACAGTTAGATTCCAATAG-CCAT
1 ATATTACAACAGTTAGATTCCAAT-GTCCAT
33653604 AT
1 AT
33653606 TGCAATGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (30 bp):
ATATTACAACAGTTAGATTCCAATGTCCAT
Found at i:33654060 original size:10 final size:10
Alignment explanation
Indices: 33654047--33654073 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
33654037 TAAAAAATAA
33654047 AAATAAACAC
1 AAATAAACAC
33654057 AAATAAACAC
1 AAATAAACAC
33654067 AAATAAA
1 AAATAAA
33654074 TAATAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (10 bp):
AAATAAACAC
Found at i:33654738 original size:19 final size:18
Alignment explanation
Indices: 33654714--33654749 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33654704 TAATAAATTA
*
33654714 TTTAATATTAAAATTTTAT
1 TTTAATAAT-AAATTTTAT
33654733 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
33654750 ACATTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:33654990 original size:17 final size:18
Alignment explanation
Indices: 33654968--33655011 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
33654958 ATTAAGTCTA
*
33654968 TATAAAATATTAT-TTAT
1 TATAAAATATCATCTTAT
33654985 TATAAAATATCATCTTAT
1 TATAAAATATCATCTTAT
33655003 TATAAAATA
1 TATAAAATA
33655012 AATTTAGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
TATAAAATATCATCTTAT
Found at i:33655266 original size:23 final size:24
Alignment explanation
Indices: 33655240--33655293 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
33655230 TATATGAATA
** * *
33655240 AATTATTTATTTTACAATAATTT-
1 AATTATTTACCTTAAAAAAATTTC
33655263 AATT-TTTACCTTAAAAAAATTTC
1 AATTATTTACCTTAAAAAAATTTC
33655286 AATTATTT
1 AATTATTT
33655294 TTATTTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 14 0.56
23 8 0.32
24 3 0.12
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (24 bp):
AATTATTTACCTTAAAAAAATTTC
Found at i:33656095 original size:2 final size:2
Alignment explanation
Indices: 33656090--33656125 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
33656080 CTATTTCCAA
33656090 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
33656126 TTTAATTCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:33669297 original size:22 final size:22
Alignment explanation
Indices: 33669271--33669314 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
33669261 GAAAATAATC
*
33669271 AAAATTAATCAAAATTTGACAT
1 AAAATTAATCAAAATTTAACAT
*
33669293 AAAATTAATTAAAATTTAACAT
1 AAAATTAATCAAAATTTAACAT
33669315 GTTCATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATTAATCAAAATTTAACAT
Found at i:33671761 original size:43 final size:43
Alignment explanation
Indices: 33671707--33671794 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
33671697 GTTAATTATG
33671707 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
1 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
* *
33671750 AACTCGTATATAATCACATATTTATAACGAGCATTTTTATGCT
1 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
33671793 AA
1 AA
33671795 GTTCACTACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (43 bp):
AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
Found at i:33673724 original size:76 final size:76
Alignment explanation
Indices: 33673633--33673879 Score: 234
Period size: 76 Copynumber: 3.3 Consensus size: 76
33673623 AACACATTAG
* * * * * **
33673633 TTTCTCTAAATTGAATTACTACGACAAATTATGCAAAATATGTTAAGAATTGAGACATCACGTAA
1 TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
33673698 ATACAATATTT
66 ATACAATATTT
* * * *
33673709 TTTCTTTAAACTGAATCACTATAACAAACTATGTAAAATATGTTATGAATTGAGACATGACACAA
1 TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
*
33673774 ATTCAATATTT
66 ATACAATATTT
** * * * * *
33673785 TCTTCTTTTAAGTTGAATCACTATAACAAACTATGC--AA-ATGTTATGAACTGAGACATGAGAC
1 T-TTC-TTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACAC
* *
33673847 AAATATACTA-TT
64 AAATACAATATTT
*
33673859 TTTCTTCAAA-TCGAATCACTA
1 TTTCTTTAAACT-GAATCACTA
33673880 TATGAAACTC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
71 1 0.01
72 13 0.09
73 3 0.02
74 3 0.02
75 29 0.20
76 67 0.46
77 3 0.02
78 27 0.18
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (76 bp):
TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
ATACAATATTT
Found at i:33674419 original size:2 final size:2
Alignment explanation
Indices: 33674412--33674436 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33674402 GTTTGGGTAT
33674412 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
33674437 TAATTCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33678587 original size:53 final size:48
Alignment explanation
Indices: 33678471--33678587 Score: 135
Period size: 48 Copynumber: 2.3 Consensus size: 48
33678461 GATTTCTTGC
* *
33678471 AATTTGTTTAGTATAGGGTTACTTACCATTCTAAGATTTTTATTTTTT
1 AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTTTTATTTTGT
* * *
33678519 AATTTGTGTAGTATAGGCTTACTTACCATTTTAAGGTTTCCTTATAGTGTTGT
1 AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTT--TTAT--T-TTGT
*
33678572 AATTTGTTTAATATAG
1 AATTTGTTTAGTATAG
33678588 ATTATGGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
48 35 0.61
50 4 0.07
52 1 0.02
53 17 0.30
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (48 bp):
AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTTTTATTTTGT
Found at i:33678928 original size:31 final size:31
Alignment explanation
Indices: 33678889--33678959 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
33678879 AAAATTTACA
* **
33678889 ATTT-AGTCATTAAATTATTTGAAAGTTTTC
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTC
* *
33678919 ATTTAAGTCATTGAACTATTCAAAAGTTTTT
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTC
33678950 ATTTAAGTCA
1 ATTTAAGTCA
33678960 CTGGATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.46
Consensus pattern (31 bp):
ATTTAAGTCATTAAACTATTCAAAAGTTTTC
Found at i:33680944 original size:31 final size:31
Alignment explanation
Indices: 33680909--33680973 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
33680899 TACAAATTTA
* *
33680909 TCATTGAATTGTTTGAAAGTTTTCATTTAAG
1 TCATTGAATTATTTAAAAGTTTTCATTTAAG
*
33680940 TCATTGAATTATTTAAAAGTTTTTATTTAAG
1 TCATTGAATTATTTAAAAGTTTTCATTTAAG
33680971 TCA
1 TCA
33680974 CTAGGTTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (31 bp):
TCATTGAATTATTTAAAAGTTTTCATTTAAG
Found at i:33681636 original size:43 final size:42
Alignment explanation
Indices: 33681571--33681768 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 42
33681561 CGCTGTTGTC
* *
33681571 AACGCCGCTATAGATCATGACCTTTAGCGGCGTTTTTCCCACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-CCACA
* * *
33681614 AACGCCGCTATAGATCAGGACCTTTAGTGGCGCTTTTACACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCACA
* * *
33681656 AACGCCGCTATAGCTCAGGACCTTTAGCGGCGCTTTTCCCAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-CCACA
* *
33681699 AATGTCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGC-TTTTCCACA
33681742 AACGCCGCTATAGATCAAGACCTTTAG
1 AACGCCGCTATAGATCAAGACCTTTAG
33681769 TATTAAGTAT
Statistics
Matches: 138, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
42 39 0.28
43 95 0.69
44 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (42 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCACA
Found at i:33681714 original size:85 final size:86
Alignment explanation
Indices: 33681571--33681768 Score: 299
Period size: 85 Copynumber: 2.3 Consensus size: 86
33681561 CGCTGTTGTC
* * * *
33681571 AACGCCGCTATAGATCATGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTATAGATCAGGACC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
*
33681636 TTTAGTGGCGC-TTTTACACA
66 TTTAGCGGCGCTTTTTACACA
* * * *
33681656 AACGCCGCTATAGCTCAGGACCTTTAGCGGCGCTTTTCCCAAAAATGTCGCTATAGATCAAGACC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
*
33681721 TTTAGCGGCGCTTTTTCCACA
66 TTTAGCGGCGCTTTTTACACA
33681742 AACGCCGCTATAGATCAAGACCTTTAG
1 AACGCCGCTATAGATCAAGACCTTTAG
33681769 TATTAAGTAT
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 68 0.67
86 33 0.33
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (86 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
TTTAGCGGCGCTTTTTACACA
Found at i:33682295 original size:29 final size:29
Alignment explanation
Indices: 33682253--33682309 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
33682243 ACTTTTAGCG
33682253 GCGCTTTGAAAAGCGCCGCAACAGAAGCT
1 GCGCTTTGAAAAGCGCCGCAACAGAAGCT
*
33682282 GCGCTTTGAAAAGCGCTGCAACAGAAGC
1 GCGCTTTGAAAAGCGCCGCAACAGAAGC
33682310 CGCTAATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.28, T:0.14
Consensus pattern (29 bp):
GCGCTTTGAAAAGCGCCGCAACAGAAGCT
Found at i:33682412 original size:43 final size:42
Alignment explanation
Indices: 33682365--33682507 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 42
33682355 CTAGCACAAA
*
33682365 CGCCGCTGAAGACTAAGACTTTTAGTGGCGTTTGTGGTCGAAG
1 CGCCGCTAAAGA-TAAGACTTTTAGTGGCGTTTGTGGTCGAAG
* * * * * *
33682408 CGCCGTTATAGATCAGGGTCTTTT-GCGGCGTTTTGTGG-GGAAAG
1 CGCCGCTAAAGAT-A-AGACTTTTAGTGGCG-TTTGTGGTCG-AAG
* **
33682452 CGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCGAAG
1 CGCCGCTAAAGATAAGACT-TTTAGTGGCGTTTGTGGTCGAAG
*
33682495 CGCCGCTATAGAT
1 CGCCGCTAAAGAT
33682508 CAGGGTCTTT
Statistics
Matches: 77, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
42 3 0.04
43 41 0.53
44 33 0.43
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (42 bp):
CGCCGCTAAAGATAAGACTTTTAGTGGCGTTTGTGGTCGAAG
Found at i:33682484 original size:87 final size:86
Alignment explanation
Indices: 33682385--33682567 Score: 294
Period size: 87 Copynumber: 2.1 Consensus size: 86
33682375 GACTAAGACT
* * *
33682385 TTTAGTGGCGTTTGTGGTCGAAGCGCCGTTATAGATCAGGGTCTTTTGCGGCGTTTTGTGGGGAA
1 TTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTT-TGCGGAA
*
33682450 AGCGCCGCTAAAGATTAGGTTC
65 AGCGCCGCTAAAGATTAGGGTC
33682472 TTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTTGCGGAAA
1 TTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTTGCGGAAA
* *
33682537 GTGCTGCTAAAGATTAGGGTC
66 GCGCCGCTAAAGATTAGGGTC
*
33682558 TTTAGCGGCG
1 TTTAGTGGCG
33682568 CTTCTCCCTA
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 34 0.38
87 55 0.62
ACGTcount: A:0.17, C:0.16, G:0.34, T:0.32
Consensus pattern (86 bp):
TTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTTGCGGAAA
GCGCCGCTAAAGATTAGGGTC
Found at i:33682517 original size:43 final size:43
Alignment explanation
Indices: 33682385--33682567 Score: 192
Period size: 43 Copynumber: 4.2 Consensus size: 43
33682375 GACTAAGACT
* *
33682385 TTTAGTGGCGTTTGTGGTCGAAGCGCCGTTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTC
* * * * *
33682428 TTTTGCGGCGTTTTGTGG-GGAAAGCGCCGCTAAAGATTAGGTTC
1 TTTAGCGGCG-TTTGTGGTCG-AAGCGCCGCTATAGATCAGGGTC
*
33682472 TTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTC
* * * * *
33682515 TTTAGCGGCGTTT-TTG-CGGAAAGTGCTGCTAAAGATTAGGGTC
1 TTTAGCGGCGTTTGTGGTC-G-AAGCGCCGCTATAGATCAGGGTC
33682558 TTTAGCGGCG
1 TTTAGCGGCG
33682568 CTTCTCCCTA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 77 0.66
44 35 0.30
ACGTcount: A:0.17, C:0.16, G:0.34, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTC
Found at i:33682586 original size:86 final size:87
Alignment explanation
Indices: 33682408--33682586 Score: 218
Period size: 86 Copynumber: 2.1 Consensus size: 87
33682398 GTGGTCGAAG
* * * *
33682408 CGCCGTTATAGATCAGGGTCTTTTGCGGCGTTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTTCT
1 CGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTGTGCGGAAAGCGCCGCTAAAGATTAGGGTCT
* * * ** * *
33682473 TTAGTGGCGTTTGTGGTCGAAG
66 TTAGCGGCGCTTCTCCTCAAAA
* *
33682495 CGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTT-TGCGGAAAGTGCTGCTAAAGATTAGGGTCT
1 CGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTGTGCGGAAAGCGCCGCTAAAGATTAGGGTCT
33682559 TTAGCGGCGCTTCTCC-CTAAAA
66 TTAGCGGCGCTTCTCCTC-AAAA
33682581 CGCCGC
1 CGCCGC
33682587 AAAAGACCCT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 1 0.01
86 45 0.58
87 32 0.41
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (87 bp):
CGCCGCTATAGATCAGGGTCTTTAGCGGCGTTTTGTGCGGAAAGCGCCGCTAAAGATTAGGGTCT
TTAGCGGCGCTTCTCCTCAAAA
Found at i:33682607 original size:43 final size:43
Alignment explanation
Indices: 33682556--33682761 Score: 213
Period size: 43 Copynumber: 4.8 Consensus size: 43
33682546 AAGATTAGGG
* * *
33682556 TCTTTAGCGGCGCTTCTCCCTA-AAACGCCGCAAAAGACCCTGA
1 TCTTTAGCGGCGCTTCTACC-ACAAACGCCGCTAAAGAACCTGA
* * * *
33682599 TCTATAGCGGCGCTTCGACCACAAACGCCACTAAAGAACCTAA
1 TCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACCTGA
*
33682642 TCTTTAGCGGCGCTTC--CCTACAAACGCCGCGAAAG-ACCATGA
1 TCTTTAGCGGCGCTTCTACC-ACAAACGCCGCTAAAGAACC-TGA
* * * * *
33682684 TCTTTAGGGGCACTTTTTCCACAAACGCCGCTAAAGAACCTTA
1 TCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACCTGA
* * *
33682727 TCTTTAGCGGCGCTTTTACCAAAAACGCCACTAAA
1 TCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAA
33682762 AGCCAACACC
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
41 5 0.04
42 30 0.22
43 96 0.71
44 5 0.04
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACCTGA
Found at i:33682706 original size:85 final size:84
Alignment explanation
Indices: 33682556--33682741 Score: 255
Period size: 85 Copynumber: 2.2 Consensus size: 84
33682546 AAGATTAGGG
* *
33682556 TCTTTAGCGGCGCTTCTCCCTAAAACGCCGCAAAAGACCCTGATCTATAGCGGCGCTTCGACCAC
1 TCTTTAGCGGCGC-T-TCCCTAAAACGCCGCAAAAGACCATGATCTATAGCGGCACTTCGACCAC
33682621 AAACGCCACTAAAGAACCTAA
64 AAACGCCACTAAAGAACCTAA
* * * ***
33682642 TCTTTAGCGGCGCTTCCCTACAAACGCCGCGAAAGACCATGATCTTTAGGGGCACTTTTTCCACA
1 TCTTTAGCGGCGCTTCCCTA-AAACGCCGCAAAAGACCATGATCTATAGCGGCACTTCGACCACA
* *
33682707 AACGCCGCTAAAGAACCTTA
65 AACGCCACTAAAGAACCTAA
33682727 TCTTTAGCGGCGCTT
1 TCTTTAGCGGCGCTT
33682742 TTACCAAAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
84 6 0.07
85 70 0.79
86 13 0.15
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (84 bp):
TCTTTAGCGGCGCTTCCCTAAAACGCCGCAAAAGACCATGATCTATAGCGGCACTTCGACCACAA
ACGCCACTAAAGAACCTAA
Found at i:33682786 original size:85 final size:85
Alignment explanation
Indices: 33682617--33682776 Score: 189
Period size: 85 Copynumber: 1.9 Consensus size: 85
33682607 GGCGCTTCGA
* * * * *
33682617 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTCCCTACAAACGCCGCGAAAGACCAT
1 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTACCTAAAAACGCCACAAAAGACCAA
* * *
33682682 GATCTTTAGGGGCACTTTTT
66 CACCTTCAGGGGCACTTTTT
* *
33682702 CCACAAACGCCGCTAAAGAACCTTATCTTTAGCGGCGCTTTTACC-AAAAACGCCACTAAAAG-C
1 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGC--TTACCTAAAAACGCCAC-AAAAGAC
33682765 CAACACCTTCAG
63 CAACACCTTCAG
33682777 TGGCGTTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
85 36 0.58
86 18 0.29
87 8 0.13
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.21
Consensus pattern (85 bp):
CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTACCTAAAAACGCCACAAAAGACCAA
CACCTTCAGGGGCACTTTTT
Found at i:33683140 original size:21 final size:21
Alignment explanation
Indices: 33683114--33683226 Score: 118
Period size: 21 Copynumber: 5.4 Consensus size: 21
33683104 TTTGACGCTT
33683114 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
33683135 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
33683156 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
33683177 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
33683198 CTCTACTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
33683219 ATCTGCTT
1 CTCTGCTT
33683227 TAAGCTGCTG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 80 1.00
ACGTcount: A:0.05, C:0.42, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:33683287 original size:66 final size:66
Alignment explanation
Indices: 33683203--33683362 Score: 207
Period size: 66 Copynumber: 2.4 Consensus size: 66
33683193 GCCGCCTCTA
* *
33683203 CTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTTGTTGAACCT
1 CTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTTT-TTGAACCT
33683266 CAG
64 CAG
* *
33683269 CTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
1 CTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
33683334 G
66 G
* * * * *
33683335 CTCCTCTCGATGTTGCCTCCGCTTTAAG
1 CTTCTCTCGCTGCTGCATCTGCTTTAAG
33683363 TTGTGTAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 76 0.93
67 5 0.06
ACGTcount: A:0.13, C:0.28, G:0.19, T:0.40
Consensus pattern (66 bp):
CTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
G
Found at i:33688791 original size:16 final size:16
Alignment explanation
Indices: 33688770--33688992 Score: 99
Period size: 16 Copynumber: 13.9 Consensus size: 16
33688760 ATAATTAAGC
33688770 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
33688786 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
* *
33688802 TATGAAAATTA---AT
1 TATGTAAGTTATGTAT
*
33688815 TAAT-TAAGTTGTGTAT
1 T-ATGTAAGTTATGTAT
* * *
33688831 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
33688845 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
33688863 CATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
33688879 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
33688897 TAT-TTA-TTATGCAAAT
1 TATGTAAGTTATG--TAT
*
33688913 TAAGTAAGTTATGTAATT
1 TATGTAAGTTATGT-A-T
* ** *
33688931 TACGAATAA-TTA-AAAA
1 TATG--TAAGTTATGTAT
* *
33688947 AATGTAAGTTATGTAAG
1 TATGTAAGTTATGT-AT
33688964 T-TGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
33688979 TATGTAAGTTATGT
1 TATGTAAGTTATGT
33688993 GAGTTATTTA
Statistics
Matches: 151, Mismatches: 33, Indels: 46
0.66 0.14 0.20
Matches are distributed among these distances:
13 7 0.05
14 16 0.11
15 7 0.05
16 80 0.53
17 10 0.07
18 25 0.17
19 3 0.02
20 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:33688812 original size:25 final size:25
Alignment explanation
Indices: 33688784--33688927 Score: 96
Period size: 25 Copynumber: 5.7 Consensus size: 25
33688774 TAAGTTATGT
*
33688784 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
33688809 ATTAATTAATTAAGTTGTGTATTATGAAA
1 ATT-A-T--GTAAGTTATGTATTATGAAA
* * *
33688838 ATTATGCTATG-TAAG--TTATGTAA
1 ATTATG-TAAGTTATGTATTATGAAA
* * * *
33688861 GTCATATAAGTTATGTATTATGTAA
1 ATTATGTAAGTTATGTATTATGAAA
* * *
33688886 GTTATGTAAGTTATTTATTATGCAA
1 ATTATGTAAGTTATGTATTATGAAA
*
33688911 ATTAAGTAAGTTATGTA
1 ATTATGTAAGTTATGTA
33688928 ATTTACGAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 16
0.72 0.16 0.13
Matches are distributed among these distances:
22 3 0.03
23 13 0.14
25 48 0.53
26 4 0.04
27 2 0.02
28 1 0.01
29 20 0.22
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:33688857 original size:9 final size:9
Alignment explanation
Indices: 33688845--33689472 Score: 174
Period size: 9 Copynumber: 70.7 Consensus size: 9
33688835 AAAATTATGC
33688845 TATGTAAGT
1 TATGTAAGT
33688854 TATGTAAGT
1 TATGTAAGT
* *
33688863 CATATAAGT
1 TATGTAAGT
33688872 TATGT-A-T
1 TATGTAAGT
33688879 TATGTAAGT
1 TATGTAAGT
33688888 TATGTAAGT
1 TATGTAAGT
*
33688897 TAT-TTA-T
1 TATGTAAGT
* *
33688904 TATGCAAAT
1 TATGTAAGT
*
33688913 TAAGTAAGT
1 TATGTAAGT
*
33688922 TATGTAATT
1 TATGTAAGT
*
33688931 TACG-AA-T
1 TATGTAAGT
* **
33688938 AAT-TAAAAA
1 TATGT-AAGT
*
33688947 AATGTAAGT
1 TATGTAAGT
33688956 TATGTAAG-
1 TATGTAAGT
33688964 T-TGTAAGT
1 TATGTAAGT
33688972 TATGT-A-T
1 TATGTAAGT
33688979 TATGTAAGT
1 TATGTAAGT
*
33688988 TATGTGAGT
1 TATGTAAGT
*
33688997 TAT-TTA-T
1 TATGTAAGT
* *
33689004 TATGCAAAT
1 TATGTAAGT
*
33689013 TAAGTAAGT
1 TATGTAAGT
*
33689022 TATGTAATT
1 TATGTAAGT
*
33689031 TACG-AA-T
1 TATGTAAGT
* * **
33689038 AATTTAAAA
1 TATGTAAGT
*
33689047 AATGTAAGT
1 TATGTAAGT
33689056 TATGTAAG-
1 TATGTAAGT
33689064 T-TGTAAGT
1 TATGTAAGT
33689072 TATGTAAGT
1 TATGTAAGT
*
33689081 TATGTATA-A
1 TATGTA-AGT
33689090 TAT-TAA-T
1 TATGTAAGT
** *
33689097 TAACTAATT
1 TATGTAAGT
*
33689106 TATGTAATT
1 TATGTAAGT
*
33689115 TATGTATA-A
1 TATGTA-AGT
33689124 TAT-TAA-T
1 TATGTAAGT
33689131 TAAT-TAAGT
1 T-ATGTAAGT
*
33689140 TATGTAATT
1 TATGTAAGT
*
33689149 TATGTATAATAT
1 TATG--TAA-GT
33689161 TAATGTAAGT
1 T-ATGTAAGT
*
33689171 TATGTATA-A
1 TATGTA-AGT
*
33689180 TATGTATAATAT
1 TATG--TAA-GT
33689192 TAATGTAAGT
1 T-ATGTAAGT
33689202 TATGTAAG-
1 TATGTAAGT
33689210 T-TGTAAGT
1 TATGTAAGT
33689218 TATGTAAGT
1 TATGTAAGT
*
33689227 TATGTATA-A
1 TATGTA-AGT
33689236 TAT-TAA-T
1 TATGTAAGT
**
33689243 TAACTAAGT
1 TATGTAAGT
*
33689252 TATGTAATT
1 TATGTAAGT
*
33689261 TATGTATAATAT
1 TATG--TAA-GT
33689273 TAATGTAAGT
1 T-ATGTAAGT
*
33689283 TATGTATA-A
1 TATGTA-AGT
33689292 TAT-TAA-T
1 TATGTAAGT
33689299 TCAT-TAAGT
1 T-ATGTAAGT
*
33689308 TATGTAATT
1 TATGTAAGT
*
33689317 TATGTATAATAT
1 TATG--TAA-GT
33689329 TAATGTAAGT
1 T-ATGTAAGT
*
33689339 TATGTATA-A
1 TATGTA-AGT
33689348 TAT-TAA-T
1 TATGTAAGT
33689355 TAAT-TAAGT
1 T-ATGTAAGT
*
33689364 TATGTAATT
1 TATGTAAGT
*
33689373 TATGTATAATAT
1 TATG--TAA-GT
33689385 TAAT-TAA-T
1 T-ATGTAAGT
33689393 TAAT-TAAGT
1 T-ATGTAAGT
*
33689402 TATGTAATT
1 TATGTAAGT
*
33689411 TATGTATAATAT
1 TATG--TAA-GT
33689423 TAATGTAAGT
1 T-ATGTAAGT
*
33689433 TATGTATA-A
1 TATGTA-AGT
33689442 TAT-TAA-T
1 TATGTAAGT
*
33689449 TATTTAAGT
1 TATGTAAGT
*
33689458 TATGTAATT
1 TATGTAAGT
33689467 TATGTA
1 TATGTA
33689473 TAATACTAAT
Statistics
Matches: 476, Mismatches: 74, Indels: 138
0.69 0.11 0.20
Matches are distributed among these distances:
7 58 0.12
8 76 0.16
9 260 0.55
10 22 0.05
11 32 0.07
12 11 0.02
13 17 0.04
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.46
Consensus pattern (9 bp):
TATGTAAGT
Found at i:33688884 original size:34 final size:33
Alignment explanation
Indices: 33688845--33689028 Score: 119
Period size: 34 Copynumber: 5.5 Consensus size: 33
33688835 AAAATTATGC
*
33688845 TATGTAAGTTATGTAAGTCATATAAGTTATGTAT
1 TATGTAAGTTATGTAAGTCATATAA-TTATGAAT
* *
33688879 TATGTAAGTTATGTAAGTTAT-TTATTATGCAAAT
1 TATGTAAGTTATGTAAGTCATATAATTATG--AAT
* * * *
33688913 TAAGTAAGTTATGTAATTTACGA-ATAATTA-AAAA
1 TATGTAAGTTATGTAA-GT-C-ATATAATTATGAAT
* * *
33688947 AATGTAAGTTATGTAAGT--TGTAAGTTATGTAT
1 TATGTAAGTTATGTAAGTCATATAA-TTATGAAT
* * *
33688979 TATGTAAGTTATGTGAGTTAT-TTATTATGCAAAT
1 TATGTAAGTTATGTAAGTCATATAATTATG--AAT
*
33689013 TAAGTAAGTTATGTAA
1 TATGTAAGTTATGTAA
33689029 TTTACGAATA
Statistics
Matches: 115, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
30 3 0.03
31 3 0.03
32 27 0.23
33 5 0.04
34 70 0.61
35 1 0.01
37 6 0.05
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (33 bp):
TATGTAAGTTATGTAAGTCATATAATTATGAAT
Found at i:33688976 original size:25 final size:24
Alignment explanation
Indices: 33688845--33689086 Score: 95
Period size: 25 Copynumber: 9.6 Consensus size: 24
33688835 AAAATTATGC
*
33688845 TATGTAAGTTATGTAAGTCATATAAGT
1 TATGTAA-TTATGTAAGT--TGTAAGT
33688872 TATGT-ATTATGTAAGTTATGTAAGT
1 TATGTAATTATGTAAG-T-TGTAAGT
* * *
33688897 TAT-TTATTATGCAAATTAAGTAAGT
1 TATGTAATTATGTAAGTT--GTAAGT
* * **
33688922 TATGTAATTTACGAATAA-TT-AAAAA
1 TATGTAA-TTATG--TAAGTTGTAAGT
*
33688947 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAA-TTATGTAAGTTGTAAGT
*
33688972 TATGT-ATTATGTAAGTTATGTGAGT
1 TATGTAATTATGTAAG-T-TGTAAGT
* * *
33688997 TAT-TTATTATGCAAATTAAGTAAGT
1 TATGTAATTATGTAAGTT--GTAAGT
* **
33689022 TATGTAATTTACGAATAA-TT-TAAAA
1 TATGTAA-TTATG--TAAGTTGTAAGT
*
33689047 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAA-TTATGTAAGTTGTAAGT
33689072 TATGTAAGTTATGTA
1 TATGTAA-TTATGTA
33689087 TAATATTAAT
Statistics
Matches: 163, Mismatches: 31, Indels: 44
0.68 0.13 0.18
Matches are distributed among these distances:
23 17 0.10
24 10 0.06
25 109 0.67
26 6 0.04
27 13 0.08
28 4 0.02
29 4 0.02
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (24 bp):
TATGTAATTATGTAAGTTGTAAGT
Found at i:33689009 original size:100 final size:100
Alignment explanation
Indices: 33688846--33689086 Score: 419
Period size: 100 Copynumber: 2.4 Consensus size: 100
33688836 AAATTATGCT
*
33688846 ATGTAAGTTATGTAAGTCATATAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAA
1 ATGTAAGTTATGTAAGT--TGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAA
33688911 ATTAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
64 ATTAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
*
33688948 ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTGAGTTATTTATTATGCAAAT
1 ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAAAT
*
33689013 TAAGTAAGTTATGTAATTTACGAATAATTTAAAAA
66 TAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
33689048 ATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTA
1 ATGTAAGTTATGTAAGTTGTAAGTTATGT-A-TTATGTA
33689087 TAATATTAAT
Statistics
Matches: 134, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
100 109 0.81
101 1 0.01
102 24 0.18
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (100 bp):
ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAAAT
TAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
Done.