Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 119 of 199
Found at i:33922533 original size:18 final size:20
Alignment explanation
Indices: 33922510--33922549 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
33922500 ATAAAATTGC
33922510 ATTTAAA-TC-AAATAAAAA
1 ATTTAAACTCAAAATAAAAA
33922528 ATTTAAACTTCAAAATAAAAA
1 ATTTAAAC-TCAAAATAAAAA
33922549 A
1 A
33922550 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
20 2 0.11
21 10 0.53
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
ATTTAAACTCAAAATAAAAA
Found at i:33922591 original size:21 final size:22
Alignment explanation
Indices: 33922550--33922601 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
33922540 AAATAAAAAA
33922550 ATTATTTAAAATAAATATTAA-T
1 ATTA-TTAAAATAAATATTAAGT
*
33922572 ATTATTAAAA-AAGTATTTAAGT
1 ATTATTAAAATAAATA-TTAAGT
*
33922594 ATTCTTAA
1 ATTATTAA
33922602 TTTCTTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 10 0.38
22 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTATTAAAATAAATATTAAGT
Found at i:33925778 original size:28 final size:28
Alignment explanation
Indices: 33925734--33925814 Score: 65
Period size: 28 Copynumber: 2.9 Consensus size: 28
33925724 AAATTGAAGG
*
33925734 TTTAAAAATCTCTTTTACTGTTTAACAA
1 TTTAAAAATCTCTTTTACTATTTAACAA
* * * *
33925762 TTTAAAAATGT-TATTTATTATTTAATAG
1 TTTAAAAATCTCT-TTTACTATTTAACAA
* ** *
33925790 TTTAAAATTAGCATTTACTATTTAA
1 TTTAAAAATCTCTTTTACTATTTAA
33925815 ACAAACATCT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.49
Consensus pattern (28 bp):
TTTAAAAATCTCTTTTACTATTTAACAA
Found at i:33936380 original size:11 final size:11
Alignment explanation
Indices: 33936364--33936389 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33936354 ATTTAAGCTC
33936364 TTTTTGTTCAA
1 TTTTTGTTCAA
33936375 TTTTTGTTCAA
1 TTTTTGTTCAA
33936386 TTTT
1 TTTT
33936390 ACTTGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTGTTCAA
Found at i:33940194 original size:15 final size:15
Alignment explanation
Indices: 33940174--33940203 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33940164 TGCAATCCCT
*
33940174 CACACGCCCGTGTGA
1 CACACGCCCATGTGA
33940189 CACACGCCCATGTGA
1 CACACGCCCATGTGA
33940204 AAACCATTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.13
Consensus pattern (15 bp):
CACACGCCCATGTGA
Found at i:33945803 original size:6 final size:6
Alignment explanation
Indices: 33945785--33945823 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
33945775 TAAGTATAAG
* * *
33945785 AAAATA ACAATA AATATA AACATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
33945824 CAAATAAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:33947492 original size:18 final size:17
Alignment explanation
Indices: 33947446--33947495 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
33947436 TAATATAACT
*
33947446 AAGAATAGAAAATAATA
1 AAGAATAAAAAATAATA
*
33947463 GAGAATAAAAAATGAATA
1 AAGAATAAAAAAT-AATA
33947481 AAGAA-AATAAAATAA
1 AAGAATAA-AAAATAA
33947496 GTAATAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (17 bp):
AAGAATAAAAAATAATA
Found at i:33947510 original size:21 final size:19
Alignment explanation
Indices: 33947458--33947511 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 19
33947448 GAATAGAAAA
33947458 TAATAGAGAATAA-AAAATG
1 TAATA-AGAATAATAAAATG
33947477 -AATAAAGAA-AATAAAATAAG
1 TAAT-AAGAATAATAAAAT--G
33947497 TAATAAGAATAATAA
1 TAATAAGAATAATAA
33947512 TAGACAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
17 2 0.07
18 12 0.41
19 1 0.03
20 6 0.21
21 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (19 bp):
TAATAAGAATAATAAAATG
Found at i:33947534 original size:52 final size:48
Alignment explanation
Indices: 33947428--33947534 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 48
33947418 CAGACCAGAA
* * * *
33947428 AAATAAAATAATATAACTAAGAATAGAAAATAATAGAGAATAAAAAAT
1 AAATAAAAAAATATAAATAAGAATAGAAAATAATAGACAAGAAAAAAT
*
33947476 GAATAAAGAAAATA-AAATAAGTAATAAGAATAATAATAGACAAGAAACAAAT
1 AAATAAA-AAAATATAAATAAG-AAT-AGAA-AATAATAGACAAGAAA-AAAT
33947528 AAATAAA
1 AAATAAA
33947535 TAATAAAGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
48 12 0.25
49 8 0.17
50 4 0.08
51 14 0.29
52 10 0.21
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.19
Consensus pattern (48 bp):
AAATAAAAAAATATAAATAAGAATAGAAAATAATAGACAAGAAAAAAT
Found at i:33951397 original size:11 final size:11
Alignment explanation
Indices: 33951383--33951449 Score: 53
Period size: 12 Copynumber: 5.6 Consensus size: 11
33951373 TGCCAGAAGC
*
33951383 AAATAAAAGAA
1 AAATAAAATAA
*
33951394 AAATTAGAAAACAA
1 AAA-TA--AAATAA
*
33951408 AAATTAAACTAA
1 AAA-TAAAATAA
33951420 AAATGAAAATAA
1 AAAT-AAAATAA
*
33951432 AAATATAATAA
1 AAATAAAATAA
33951443 AAATAAA
1 AAATAAA
33951450 TTTCTAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
11 16 0.35
12 19 0.41
14 11 0.24
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:33955996 original size:25 final size:25
Alignment explanation
Indices: 33955974--33956049 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 25
33955964 ATATAAATTT
33955974 ATTATCATAAATTATATTAAAAT-TC
1 ATTAT-ATAAATTATATTAAAATATC
* *
33955999 ATTA-ATACATTTTATTAAAATAT-
1 ATTATATAAATTATATTAAAATATC
*
33956022 -TTTTAT-AATTATATTAAAATATC
1 ATTATATAAATTATATTAAAATATC
33956045 ATTAT
1 ATTAT
33956050 CAAAATAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
22 16 0.39
23 17 0.41
24 4 0.10
25 4 0.10
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTATATAAATTATATTAAAATATC
Found at i:33956039 original size:22 final size:23
Alignment explanation
Indices: 33955983--33956048 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
33955973 TATTATCATA
33955983 AATTATATTAAAAT-TCATTAAT
1 AATTATATTAAAATATCATTAAT
* * *
33956005 ACATTTTATTAAAATAT-TTTTAT
1 A-ATTATATTAAAATATCATTAAT
33956028 AATTATATTAAAATATCATTA
1 AATTATATTAAAATATCATTA
33956049 TCAAAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 15 0.43
23 19 0.54
24 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTATATTAAAATATCATTAAT
Found at i:33956049 original size:22 final size:22
Alignment explanation
Indices: 33955976--33956049 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
33955966 ATAAATTTAT
33955976 TATCA-TA-AATTATATTAAAA
1 TATCATTATAATTATATTAAAA
*
33955996 T-TCATTAATACATTTTATTAAAA
1 TATCATT-ATA-ATTATATTAAAA
**
33956019 TATTTTTATAATTATATTAAAA
1 TATCATTATAATTATATTAAAA
33956041 TATCATTAT
1 TATCATTAT
33956050 CAAAATAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 1 0.02
22 19 0.44
23 15 0.35
24 3 0.07
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
TATCATTATAATTATATTAAAA
Found at i:33959566 original size:21 final size:21
Alignment explanation
Indices: 33959540--33959589 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
33959530 TTAATAACCT
*
33959540 TGGTCAAAATAGTTATGGTGA
1 TGGTCAAAATAGTTATGATGA
*
33959561 TGGTCAAAATTGTTATGATGA
1 TGGTCAAAATAGTTATGATGA
33959582 TGGTCAAA
1 TGGTCAAA
33959590 GGTGGGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (21 bp):
TGGTCAAAATAGTTATGATGA
Found at i:33962490 original size:3 final size:3
Alignment explanation
Indices: 33962482--33962532 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
33962472 ATAACCAAAT
* * *
33962482 ATA ATA AT- ATCA ATA CTA ATA AGA GTA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
33962528 ATA AT
1 ATA AT
33962533 TAATTAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.82
4 5 0.13
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:33964177 original size:44 final size:44
Alignment explanation
Indices: 33964123--33964812 Score: 403
Period size: 44 Copynumber: 15.7 Consensus size: 44
33964113 ATTTTCAGTT
* * *
33964123 TGCTCCACTGCAACTTCAGGGAGATCAGATTATTGGCTGTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* *
33964167 TGCTCCACTGCAACTTCAGGGAGATAAGA-T-TT-G-TCATGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCT-TTAATC
* * * *
33964208 TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT-TAT--TAGCTTTAATC
* * * * * * *
33964255 TGTTCCACCGCAGCTTCAGGGAAATAAGA-T-TCA-CTATCAT-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * *
33964295 TAG-T-CACTGCAACTTCAGGGAGATAACACT-TCA-CTTCAATC
1 T-GCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * * * *
33964336 CGCTCCACTGTAACTTCAGAGAGATAGGATTATTGGCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
** * * * * * * *
33964380 TATTCCACTGCAACTTTAGGGGGATAAGACTTGCTT-TCTTCAGTT
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TT-ATTAGCTTTAATC
* * *
33964425 TGCTCCACTGCAACTTCAGGGATATAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* * * * * *
33964469 CGCTCCACTGAAACTTCAGGGAGATAGGATTACTT-TCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTA-TTAGCTTTAATC
* *
33964513 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* ** *
33964557 CGCTCCACTATAACTTCAGGGAGATAGGATTATTAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * *
33964601 TGCTCTACTGCAACTTCAGGGAGATAAGATTCGCCATCT-TCTTCAAT-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT----AT-TAGCTTTAATC
* * * * ** * *
33964648 T-CATTCCACTGTAACTTTAGGGGGATAAGACTTGTTTTCTTCAGTC
1 TGC--TCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* * * * *
33964694 TGCTCCACTACAACTTCAAGGAGTTAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* * * *
33964738 TGATCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * *
33964782 TACTCTACTGTACCTTCAGGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
33964813 CGCCATCTTC
Statistics
Matches: 496, Mismatches: 115, Indels: 70
0.73 0.17 0.10
Matches are distributed among these distances:
39 20 0.04
40 12 0.02
41 39 0.08
42 24 0.05
43 11 0.02
44 252 0.51
45 70 0.14
46 5 0.01
47 29 0.06
48 31 0.06
49 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
Found at i:33964701 original size:181 final size:181
Alignment explanation
Indices: 33964502--33964837 Score: 582
Period size: 181 Copynumber: 1.9 Consensus size: 181
33964492 ATAGGATTAC
* * *
33964502 TTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTA
1 TTTCTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
*
33964567 TAACTTCAGGGAGATAGGATTATTAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
66 TAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
33964632 CGCCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
131 CGCCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
* * *
33964683 TTTCTTCAGTCTGCTCCACTACAACTTCAAGGAGTTAAGACTTGTAACTTTAATCTGATCCACTG
1 TTTCTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
* * *
33964748 TAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTGTACCTTCAGGGAGATAAGATT
66 TAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
33964813 CGCCATCTTCTTCAATTCATTCCAC
131 CGCCATCTTCTTCAATTCATTCCAC
33964838 AGCAACTTCA
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
181 145 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (181 bp):
TTTCTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
TAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
CGCCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
Found at i:33965172 original size:24 final size:24
Alignment explanation
Indices: 33965140--33965187 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
33965130 CAGATTGCCC
*
33965140 CCACTGTAATCTTCAAGGTTCAAT
1 CCACCGTAATCTTCAAGGTTCAAT
33965164 CCACCGTAATCTTCAAGGTTCAAT
1 CCACCGTAATCTTCAAGGTTCAAT
33965188 GCACAGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (24 bp):
CCACCGTAATCTTCAAGGTTCAAT
Found at i:33968046 original size:49 final size:47
Alignment explanation
Indices: 33967962--33968467 Score: 796
Period size: 47 Copynumber: 10.6 Consensus size: 47
33967952 TATTTGAATA
* *
33967962 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33968009 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33968058 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33968105 AATGTGAAAGTGTATATATATGTGTATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTG-ATAAGGCCTAATGGCCGATGTGATG
33968155 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33968204 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33968251 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33968300 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33968347 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33968394 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33968441 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33968468 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 22, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 246 0.57
49 137 0.32
50 47 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33968070 original size:96 final size:94
Alignment explanation
Indices: 33967962--33968467 Score: 796
Period size: 96 Copynumber: 5.3 Consensus size: 94
33967952 TATTTGAATA
* *
33967962 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
33968027 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33968058 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
33968123 TATGTGTATAAGGCCTAATGGCCGATGTGATG
64 TATGTG-ATAAGGCCTAATGGCCGATGTGATG
33968155 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
33968220 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
33968251 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
33968316 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
33968347 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
33968412 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
33968441 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33968468 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 100 0.26
96 199 0.51
97 47 0.12
99 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33970992 original size:45 final size:45
Alignment explanation
Indices: 33970927--33971013 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
33970917 CCTATCCTTT
* *
33970927 TTTTTAGGACTCAAATCGCCCTTTGCGAGTTTTCACATTGGTTTC
1 TTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACATTGGTTTC
* *
33970972 TTTTTAGGACTCAAAGCGCCCTTTACGGGTTTTCACCTTGGT
1 TTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACATTGGT
33971014 CCCTTCTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (45 bp):
TTTTTAGGACTCAAAGCGCCCTTTACGAGTTTTCACATTGGTTTC
Found at i:33972015 original size:11 final size:11
Alignment explanation
Indices: 33971977--33972015 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
33971967 GGCCTCTCCT
33971977 TTTTCTTTTCC
1 TTTTCTTTTCC
33971988 TTTT-TTTTCC
1 TTTTCTTTTCC
* *
33971998 TTCTCTTTTTC
1 TTTTCTTTTCC
33972009 TTTTCTT
1 TTTTCTT
33972016 CTTCTATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTCTTTTCC
Found at i:33972725 original size:52 final size:52
Alignment explanation
Indices: 33972663--33972763 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
33972653 AGTCTGGAGA
33972663 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
1 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
* *
33972715 TAGGCTACAATCTATGTCATCTTCAAAGTCTTGAGATCCCTCTAAACAC
1 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACAC
33972764 ATGTCTTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (52 bp):
TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
Found at i:33972985 original size:24 final size:25
Alignment explanation
Indices: 33972943--33972994 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
33972933 CAAAAGAATG
*
33972943 AAAGAATAAAAAATAATTA-TTCAA
1 AAAGAATAAAAAATAATTAGCTCAA
*
33972967 AAAGAATGAAAGAAT-ATTAGCTCAA
1 AAAGAAT-AAAAAATAATTAGCTCAA
33972992 AAA
1 AAA
33972995 TGATTACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.63, C:0.06, G:0.10, T:0.21
Consensus pattern (25 bp):
AAAGAATAAAAAATAATTAGCTCAA
Found at i:33973933 original size:19 final size:20
Alignment explanation
Indices: 33973909--33973955 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
33973899 TGGTGGACTT
* *
33973909 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
33973928 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
33973948 -AATGCAAA
1 TAATGCAAA
33973956 AAGGTGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:33976178 original size:19 final size:20
Alignment explanation
Indices: 33976133--33976178 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
33976123 AATTTAAAAT
* * *
33976133 AAATAATATATACATATATG
1 AAATAATAAATACATACATA
33976153 AAA-AATAAATAC-TACATA
1 AAATAATAAATACATACATA
33976171 AAATAATA
1 AAATAATA
33976179 GTATCTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 7 0.32
19 12 0.55
20 3 0.14
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (20 bp):
AAATAATAAATACATACATA
Found at i:33976364 original size:15 final size:15
Alignment explanation
Indices: 33976357--33976392 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
33976347 TAATAATATC
33976357 AATAATAATAAGAGT
1 AATAATAATAAGAGT
*
33976372 AATAATAATAAATAGT
1 AATAATAAT-AAGAGT
33976388 AATAA
1 AATAA
33976393 ATTAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAATAATAAGAGT
Found at i:33978027 original size:27 final size:27
Alignment explanation
Indices: 33977997--33978049 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
33977987 TTCATCGTCT
* *
33977997 ACTACACCTTTTGCTGATGTTCAATCC
1 ACTACACCTATTGCTGAAGTTCAATCC
*
33978024 ACTACGCCTATTGCTGAAGTTCAATC
1 ACTACACCTATTGCTGAAGTTCAATC
33978050 TGCTCCTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (27 bp):
ACTACACCTATTGCTGAAGTTCAATCC
Found at i:33985172 original size:28 final size:28
Alignment explanation
Indices: 33985109--33985231 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
33985099 ATATTAAGTC
*
33985109 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
33985136 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33985164 CGCACACTTAATGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
33985192 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
33985221 CGCACACTTAG
1 CGCACACTTAG
33985232 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34006258 original size:5 final size:5
Alignment explanation
Indices: 34006248--34006277 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
34006238 AATAGAGTAT
34006248 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
34006278 GCAAAAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:34006676 original size:16 final size:16
Alignment explanation
Indices: 34006655--34006699 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
34006645 ATTTTTTGAT
34006655 TTATTTTTGTAAGGTA
1 TTATTTTTGTAAGGTA
34006671 TTATTTTTGTAAGGTA
1 TTATTTTTGTAAGGTA
*
34006687 TTAGTTTTGTAAG
1 TTATTTTTGTAAG
34006700 AAAGGAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (16 bp):
TTATTTTTGTAAGGTA
Found at i:34006778 original size:3 final size:3
Alignment explanation
Indices: 34006772--34006804 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
34006762 GTTGTTGTTG
34006772 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
34006805 GATACAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:34007070 original size:12 final size:13
Alignment explanation
Indices: 34007043--34007086 Score: 63
Period size: 14 Copynumber: 3.3 Consensus size: 13
34007033 TGTAATGATA
34007043 TTATTGTACTATAT
1 TTATTGTA-TATAT
34007057 TTATTGTA-ATAT
1 TTATTGTATATAT
34007069 TTATTGTATTATAT
1 TTATTGTA-TATAT
34007083 TTAT
1 TTAT
34007087 GTGTTTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.43
14 16 0.57
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (13 bp):
TTATTGTATATAT
Found at i:34007075 original size:26 final size:28
Alignment explanation
Indices: 34007032--34007086 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
34007022 TTTAGTTTTT
34007032 TTGTAATGATATTATTGTACTATATTTA
1 TTGTAATGATATTATTGTACTATATTTA
*
34007060 TTGTAAT-AT-TTATTGTATTATATTTA
1 TTGTAATGATATTATTGTACTATATTTA
34007086 T
1 T
34007087 GTGTTTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 17 0.65
27 2 0.08
28 7 0.27
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (28 bp):
TTGTAATGATATTATTGTACTATATTTA
Found at i:34012065 original size:14 final size:14
Alignment explanation
Indices: 34012046--34012072 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34012036 GAATTTTCTC
34012046 AATTTTTTTGCACT
1 AATTTTTTTGCACT
34012060 AATTTTTTTGCAC
1 AATTTTTTTGCAC
34012073 AAAACACTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (14 bp):
AATTTTTTTGCACT
Found at i:34012259 original size:21 final size:21
Alignment explanation
Indices: 34012220--34012259 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
34012210 ACCACCAAAT
* *
34012220 CGTATTTGACCGATCTAAACC
1 CGTATTTAACCGATATAAACC
*
34012241 CGTATTTAACCTATATAAA
1 CGTATTTAACCGATATAAA
34012260 TAACTCATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
CGTATTTAACCGATATAAACC
Found at i:34012712 original size:13 final size:14
Alignment explanation
Indices: 34012696--34012724 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34012686 AATTGATTTT
34012696 TTAAATTAA-TAAA
1 TTAAATTAATTAAA
34012709 TTAAATTAATTAAA
1 TTAAATTAATTAAA
34012723 TT
1 TT
34012725 TTCTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAATTAATTAAA
Found at i:34013164 original size:3 final size:3
Alignment explanation
Indices: 34013156--34013238 Score: 157
Period size: 3 Copynumber: 27.7 Consensus size: 3
34013146 GTGCGTCCAT
*
34013156 TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
34013204 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
34013239 TGTCGATCTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:34015433 original size:21 final size:21
Alignment explanation
Indices: 34015391--34015433 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
34015381 CCAAAATCAA
* *
34015391 ACATTTAAATAACTTCACAAC
1 ACATTCAAATAACTTCAAAAC
34015412 ACATTCAAATAAGCTT-AAAAC
1 ACATTCAAATAA-CTTCAAAAC
34015433 A
1 A
34015434 TACCAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.51, C:0.21, G:0.02, T:0.26
Consensus pattern (21 bp):
ACATTCAAATAACTTCAAAAC
Found at i:34021343 original size:18 final size:19
Alignment explanation
Indices: 34021314--34021354 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
34021304 TTTCATGCAC
*
34021314 ACACAGTTCCACTAATCAG
1 ACACAGTTCCACTAATCAA
34021333 ACACA-TTCCACTAATCAA
1 ACACAGTTCCACTAATCAA
34021351 ACAC
1 ACAC
34021355 CATTAACGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.20
Consensus pattern (19 bp):
ACACAGTTCCACTAATCAA
Found at i:34031584 original size:12 final size:12
Alignment explanation
Indices: 34031554--34031578 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34031544 TAACGATTAT
34031554 TTATTTGTTTGC
1 TTATTTGTTTGC
34031566 TTATTTGTTTGC
1 TTATTTGTTTGC
34031578 T
1 T
34031579 CTTTTGAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (12 bp):
TTATTTGTTTGC
Found at i:34037638 original size:44 final size:43
Alignment explanation
Indices: 34037607--34037894 Score: 324
Period size: 44 Copynumber: 6.5 Consensus size: 43
34037597 TCTAGTCTAT
**
34037607 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTG-TCCAC
* * * * *
34037651 TGCAACTTGAAGGAGATAAGATTTTCTATCTTCAATCTGGTCCAC
1 TACAACTTCAGGGAGATAAGA-TTTGTAGCTTCAATCT-GTCCAC
* *
34037696 TACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATCCAC
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTG-TCCAC
* * *
34037740 TGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCAC
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTG-TCCAC
* * * * * *
34037784 TACAACTTCAAGGAGATATGATTTGTGGCTTTAATATACTCCAC
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCT-GTCCAC
* *
34037828 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATCCAC
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCT-GTCCAC
*
34037872 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAGGGAGATAAGATT
34037895 CGTTATGATG
Statistics
Matches: 210, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
43 1 0.00
44 171 0.81
45 37 0.18
46 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (43 bp):
TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGTCCAC
Found at i:34037817 original size:88 final size:88
Alignment explanation
Indices: 34037607--34037894 Score: 380
Period size: 88 Copynumber: 3.3 Consensus size: 88
34037597 TCTAGTCTAT
* * * * *
34037607 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTGAAGGAGATAAGA
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
* * *
34037672 TTTTCTATCTTCAATCTGGTCCAC
66 -TTTGTAGCTTCAATCTGATCCAC
* *
34037696 TACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
* * *
34037761 TTTGTGGCTTTAATCTGCTCCAC
66 TTTGTAGCTTCAATCTGATCCAC
* * *
34037784 TACAACTTCAAGGAGATATGATTTGTGGCTTTAATAT-ACTCCACTGCAACTTCAGGGAGATAAG
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGA-TCCACTGCAACTTCAGGGAGATAAG
*
34037848 ATTTGTAGCTTCAATCTAATCCAC
65 ATTTGTAGCTTCAATCTGATCCAC
* *
34037872 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAAGGAGATAAGATT
34037895 CGTTATGATG
Statistics
Matches: 174, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
87 1 0.01
88 115 0.66
89 58 0.33
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (88 bp):
TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
TTTGTAGCTTCAATCTGATCCAC
Found at i:34037885 original size:132 final size:133
Alignment explanation
Indices: 34037607--34037894 Score: 389
Period size: 132 Copynumber: 2.2 Consensus size: 133
34037597 TCTAGTCTAT
** * *
34037607 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTGAAGGAGATAAGA
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
* * ** * * *
34037672 TTTTCTATCTTCAATCTGGTCCACTACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATC
66 TTTTCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
34037737 CAC
131 CAC
* * * *
34037740 TGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAAGGAGATATGA
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
* * * *
34037805 -TTTGTGGCTTTAATATACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
66 TTTTCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
34037869 CAC
131 CAC
*
34037872 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAGGGAGATAAGATT
34037895 CGTTATGATG
Statistics
Matches: 134, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
132 77 0.57
133 57 0.43
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (133 bp):
TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
TTTTCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
CAC
Found at i:34045822 original size:19 final size:20
Alignment explanation
Indices: 34045800--34045850 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
34045790 GGGTCTTTTT
*
34045800 ATGAAATTTAATGCAT-ATG-
1 ATGAAATGTAATGC-TGATGA
34045819 ATGAAATGTAATGCTGATGA
1 ATGAAATGTAATGCTGATGA
34045839 ATGAAATG-AATG
1 ATGAAATGTAATG
34045851 AAAAAAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.69
20 8 0.28
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCTGATGA
Found at i:34045939 original size:20 final size:19
Alignment explanation
Indices: 34045893--34045940 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
34045883 TTAGAACAAC
* *
34045893 TTTACTATAAAACAAATCTC
1 TTTAC-ATAAAACAAATATA
34045913 TTTACATAAAACAAATATA
1 TTTACATAAAACAAATATA
34045932 TATTACATA
1 T-TTACATA
34045941 TGCAATCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTACATAAAACAAATATA
Found at i:34052278 original size:40 final size:40
Alignment explanation
Indices: 34052223--34052300 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
34052213 GCGTTTGGAT
34052223 AAAAAACGCCACTAAAAATC-AATCACTAGCGGCGCTTTAA
1 AAAAAACGCCACTAAAAATCGAAT-ACTAGCGGCGCTTTAA
* * * *
34052263 AAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTT
1 AAAAAACGCCACTAAAAATCGAATACTAGCGGCGCTTT
34052301 TCGGAAAACG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (40 bp):
AAAAAACGCCACTAAAAATCGAATACTAGCGGCGCTTTAA
Found at i:34052309 original size:40 final size:38
Alignment explanation
Indices: 34052265--34052340 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 38
34052255 CGCTTTAAAA
* *
34052265 AAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTCGG
1 AAAACGCCGCTAAAAAT-GAGCATTAGCGGCG-TTTTCGG
*
34052305 AAAACGCCTCTAAAAATGAGCATTAGCGGCGTTTTC
1 AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTC
34052341 CAATAAGCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.15
39 13 0.39
40 15 0.45
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (38 bp):
AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTCGG
Found at i:34052930 original size:7 final size:7
Alignment explanation
Indices: 34052831--34052963 Score: 65
Period size: 7 Copynumber: 18.7 Consensus size: 7
34052821 GAGTTACTAT
*
34052831 TTTAAGG
1 TTTAGGG
*
34052838 TTTATGG
1 TTTAGGG
*
34052845 ATTATGGG
1 TTTA-GGG
34052853 TTTAGGG
1 TTTAGGG
* * *
34052860 GTTATGA
1 TTTAGGG
*
34052867 TTTATGG
1 TTTAGGG
*
34052874 TTTATGG
1 TTTAGGG
*
34052881 TTTAAAGG
1 TTT-AGGG
*
34052889 -TTGGGG
1 TTTAGGG
*
34052895 TTTAAGG
1 TTTAGGG
34052902 TTTAGAGG
1 TTTAG-GG
*
34052910 -TTATGTG
1 TTTA-GGG
*
34052917 TTAAGGG
1 TTTAGGG
34052924 TTTAGGG
1 TTTAGGG
34052931 TTTTAGGG
1 -TTTAGGG
34052939 TTTA-GG
1 TTTAGGG
* *
34052945 TTTATGA
1 TTTAGGG
34052952 TTTAGGG
1 TTTAGGG
34052959 TTTAG
1 TTTAG
34052964 ATAAACTAGT
Statistics
Matches: 96, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
6 8 0.08
7 68 0.71
8 20 0.21
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:34052940 original size:15 final size:15
Alignment explanation
Indices: 34052920--34052961 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
34052910 TTATGTGTTA
34052920 AGGGTTTAGGGTTTT
1 AGGGTTTAGGGTTTT
34052935 AGGGTTTA-GG-TTT
1 AGGGTTTAGGGTTTT
* *
34052948 ATGATTTAGGGTTT
1 AGGGTTTAGGGTTT
34052962 AGATAAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 9 0.39
14 4 0.17
15 10 0.43
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.48
Consensus pattern (15 bp):
AGGGTTTAGGGTTTT
Found at i:34054767 original size:41 final size:41
Alignment explanation
Indices: 34054421--34054764 Score: 499
Period size: 41 Copynumber: 8.4 Consensus size: 41
34054411 GATTCACTGT
* * * * *
34054421 CACTTAGCTTGTTAGGCTTAAAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * * *
34054462 CACTTAGCCTGCTAGGCTTATAGCCTAATCCAGTTCACCGA
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
34054503 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAAATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * *
34054544 CACTTAGCCTGCTAGGCTTATAGCCTAATTCAAATCATCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
34054585 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
34054626 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* *
34054667 CACTTAGCCTGCTAGGCTTATAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * *
34054708 CACTTAGCCTGCTAGGTTTATAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
34054749 TACTTAGCCTGCTAGG
1 CACTTAGCCTGCTAGG
34054765 TTTTAAAACC
Statistics
Matches: 278, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 278 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
Found at i:34057703 original size:43 final size:43
Alignment explanation
Indices: 34057650--34057735 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
34057640 TTAAGCAATA
34057650 GCAGCGTTTTTATAATAAACGCCGCAAAGAATAATTTTACTTT
1 GCAGCGTTTTTATAATAAACGCCGCAAAGAATAATTTTACTTT
*
34057693 GCAGCGTTTTTATAATAAACGCTGCAAAGAATAATTTTACTTT
1 GCAGCGTTTTTATAATAAACGCCGCAAAGAATAATTTTACTTT
34057736 AAAAAATTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (43 bp):
GCAGCGTTTTTATAATAAACGCCGCAAAGAATAATTTTACTTT
Found at i:34059817 original size:29 final size:29
Alignment explanation
Indices: 34059775--34059832 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
34059765 CGCCAGAGGG
*
34059775 TTTCTATTGAAGAATGCAAGAAAAACTTA
1 TTTCTATTGAAGAACGCAAGAAAAACTTA
34059804 TTTCTATTGAAGAACGCAAGAAAAACTTA
1 TTTCTATTGAAGAACGCAAGAAAAACTTA
34059833 AGGAAATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCTATTGAAGAACGCAAGAAAAACTTA
Found at i:34061264 original size:43 final size:42
Alignment explanation
Indices: 34061152--34061407 Score: 187
Period size: 43 Copynumber: 6.0 Consensus size: 42
34061142 TTTTTAAAGA
* *
34061152 TATG-TTTTTAGCGGTGTTTGTGTGAAAAGCACCGCTAAAGGT
1 TATGATTTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGT
* * *
34061194 T-TGATATTGAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGT
1 TATGATTTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
*
34061236 TATGATTTTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGT
1 TATGATTTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
* * * * ** *
34061279 TTTG-TTCTATAGCGGCGTTTGTGTAAAAAGTGCCATTAAAAGT
1 TATGATT-TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGT
* * * * * *
34061322 TGTGATCTTTAGCGGCGTTTGTGGGATAAGCGTCACTAAAGGC
1 TATGATTTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGT
** * * * *
34061365 CCT-ATTCTATAGCGGCGTTTGTGTGAAATGCACTGCTAAAGGT
1 TATGATT-TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGT
34061408 CTTGTTCTAT
Statistics
Matches: 166, Mismatches: 39, Indels: 17
0.75 0.18 0.08
Matches are distributed among these distances:
41 2 0.01
42 39 0.23
43 123 0.74
44 2 0.01
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (42 bp):
TATGATTTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGT
Found at i:34061342 original size:86 final size:84
Alignment explanation
Indices: 34061158--34061388 Score: 230
Period size: 86 Copynumber: 2.7 Consensus size: 84
34061148 AAGATATGTT
* * * **
34061158 TTTAGCGGTGTTTGTGTGAAAAGCACCGCTAAAGGTTTGATAT-TGAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGTGTTTGTG-GAAAAGCGCCGCTAAAGGTTTGTTCTAT-AGCGGCGTTTGTGTAAAAA
* * * *
34061222 GCGTCGCTAAAGGTTATGATT
64 GCGCCACTAAAAGTTATGATC
34061243 TTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGTTTTGTTCTATAGCGGCGTTTGTGTAAAAA
1 TTTAGCGGTGTTTGT-GGAAAAGCGCCGCTAAAGG-TTTGTTCTATAGCGGCGTTTGTGTAAAAA
* * *
34061308 GTGCCATTAAAAGTTGTGATC
64 GCGCCACTAAAAGTTATGATC
* * * * ** *
34061329 TTTAGCGGCGTTTGTGGGATAAGCGTCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGT
1 TTTAGCGGTGTTTGT-GGAAAAGCGCCGCTAAAGG-TTTGTTCTATAGCGGCGTTTGTGT
34061389 GAAATGCACT
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
85 32 0.26
86 89 0.73
87 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (84 bp):
TTTAGCGGTGTTTGTGGAAAAGCGCCGCTAAAGGTTTGTTCTATAGCGGCGTTTGTGTAAAAAGC
GCCACTAAAAGTTATGATC
Found at i:34061449 original size:129 final size:129
Alignment explanation
Indices: 34061160--34061451 Score: 308
Period size: 129 Copynumber: 2.3 Consensus size: 129
34061150 GATATGTTTT
* * ** * * *
34061160 TAGCGGTGTTTGTGTGAAAAGCACC-GCTAAAGGTT-TGATATTGAGCGGCGTTTGTGGGAAAAG
1 TAGCGGCGTTTGTGTAAAAAGTGCCAGC-AAAAGTTGTGATCTTTAGCGGCGTTTGTGGGAAAAG
* ** * * * *
34061223 CGTCGCTAAAGGTTATGATTTTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGTTTTGTTCTA
65 CGTCACTAAAGGCCATGATTTATAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCTTGTTCTA
** *
34061288 TAGCGGCGTTTGTGTAAAAAGTGCCATTAAAAGTTGTGATCTTTAGCGGCGTTTGTGGGATAAGC
1 TAGCGGCGTTTGTGTAAAAAGTGCCAGCAAAAGTTGTGATCTTTAGCGGCGTTTGTGGGAAAAGC
* * *
34061353 GTCACTAAAGGCCCT-ATTCTATAGCGGCGTTTGT-GTGAAATGCACTGCTAAAGGTCTTGTTCT
66 GTCACTAAAGGCCATGATT-TATAGCGGCGTTTGTAG-GAAAAGCACCGCTAAAGGTCTTGTTCT
34061416 A
129 A
*
34061417 TAGCGGCGTTTATTGCTAAAAA-TGCC-GCAAAAGTT
1 TAGCGGCGTTT-GTG-TAAAAAGTGCCAGCAAAAGTT
34061452 AGCGGCGGTG
Statistics
Matches: 135, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
128 31 0.23
129 92 0.68
130 6 0.04
131 6 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (129 bp):
TAGCGGCGTTTGTGTAAAAAGTGCCAGCAAAAGTTGTGATCTTTAGCGGCGTTTGTGGGAAAAGC
GTCACTAAAGGCCATGATTTATAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCTTGTTCTA
Found at i:34064245 original size:51 final size:51
Alignment explanation
Indices: 34064182--34064324 Score: 200
Period size: 51 Copynumber: 2.8 Consensus size: 51
34064172 TAAAAGTGAA
*
34064182 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTA-CTGGAT
1 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GGAT
* * *
34064233 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
* *
34064284 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
1 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATG
34064325 TGAACTGATA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
50 1 0.01
51 78 0.96
52 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.32
Consensus pattern (51 bp):
AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
Found at i:34064326 original size:26 final size:26
Alignment explanation
Indices: 34064246--34064326 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
34064236 TTTGATCACG
34064246 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
34064272 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
34064297 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
34064323 TGTG
1 TGTG
34064327 AACTGATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:34064571 original size:16 final size:16
Alignment explanation
Indices: 34064550--34064581 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34064540 TGATTGAAAG
*
34064550 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
34064566 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
34064582 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:34067172 original size:29 final size:30
Alignment explanation
Indices: 34067099--34067176 Score: 104
Period size: 31 Copynumber: 2.6 Consensus size: 30
34067089 TTAATTTTTG
* * *
34067099 AAAAGTAAAGGGACTAAAATTTATCAATTCA
1 AAAAGTACAGGGACTAAAATTGATCAAAT-A
*
34067130 AAAAGTACAAGGACTAAAATTGATCAAAT-
1 AAAAGTACAGGGACTAAAATTGATCAAATA
34067159 AAAAGTACAGGGACTAAA
1 AAAAGTACAGGGACTAAA
34067177 TTTGTAACTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 17 0.40
31 25 0.60
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.21
Consensus pattern (30 bp):
AAAAGTACAGGGACTAAAATTGATCAAATA
Found at i:34081550 original size:9 final size:9
Alignment explanation
Indices: 34081504--34081552 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
34081494 AACATCACCA
*
34081504 TCCTCATTG
1 TCCTCATCG
34081513 TCCTCATCG
1 TCCTCATCG
* *
34081522 TCGTCGTCG
1 TCCTCATCG
* *
34081531 GCCTCACCG
1 TCCTCATCG
34081540 TCCTCATCG
1 TCCTCATCG
34081549 TCCT
1 TCCT
34081553 TTTTGCAACC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.08, C:0.43, G:0.16, T:0.33
Consensus pattern (9 bp):
TCCTCATCG
Found at i:34083644 original size:13 final size:13
Alignment explanation
Indices: 34083626--34083719 Score: 116
Period size: 13 Copynumber: 7.1 Consensus size: 13
34083616 ATTAAAAGTC
*
34083626 AAAACATTATATT
1 AAAACAGTATATT
34083639 AAAACAGTATATTT
1 AAAACAGTATA-TT
*
34083653 ATAACAGTATATT
1 AAAACAGTATATT
*
34083666 AAAACAATATATT
1 AAAACAGTATATT
*
34083679 AAAAAAGTATATTT
1 AAAACAGTATA-TT
* *
34083693 ATAATAGTATATT
1 AAAACAGTATATT
34083706 AAAACAGTATATT
1 AAAACAGTATATT
34083719 A
1 A
34083720 CATTAAAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
13 46 0.67
14 23 0.33
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (13 bp):
AAAACAGTATATT
Found at i:34083663 original size:27 final size:26
Alignment explanation
Indices: 34083626--34083719 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
34083616 ATTAAAAGTC
*
34083626 AAAACATTATATTAAAACAGTATATTT
1 AAAACAGTATATTAAAACAGTATA-TT
* *
34083653 ATAACAGTATATTAAAACAATATATT
1 AAAACAGTATATTAAAACAGTATATT
* * *
34083679 AAAAAAGTATATTTATAATAGTATATT
1 AAAACAGTATA-TTAAAACAGTATATT
34083706 AAAACAGTATATTA
1 AAAACAGTATATTA
34083720 CATTAAAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 14 0.25
27 43 0.75
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (26 bp):
AAAACAGTATATTAAAACAGTATATT
Found at i:34083681 original size:40 final size:40
Alignment explanation
Indices: 34083626--34083719 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
34083616 ATTAAAAGTC
* *
34083626 AAAACATTATATTAAAACAGTATATTTATAACAGTATATT
1 AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
*
34083666 AAAACAATATATTAAAAAAGTATATTTATAATAGTATATT
1 AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
*
34083706 AAAACAGTATATTA
1 AAAACAATATATTA
34083720 CATTAAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (40 bp):
AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
Found at i:34089724 original size:13 final size:13
Alignment explanation
Indices: 34089706--34089730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34089696 TTGATTTGAT
34089706 TTGATTATGTAAA
1 TTGATTATGTAAA
34089719 TTGATTATGTAA
1 TTGATTATGTAA
34089731 TCTTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:34093224 original size:172 final size:172
Alignment explanation
Indices: 34092931--34093275 Score: 627
Period size: 172 Copynumber: 2.0 Consensus size: 172
34092921 CAACTTACGC
34092931 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
1 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
* * *
34092996 TTGAAGCTAAAAGATAGATATTCGAACTCTATGAAGACATCTCAACCCAGAAATGTCAAGATCCC
66 TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
*
34093061 ATCCAAAACGTCATCACAATTCTACTGATTTTCCAAGCTTAA
131 ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
34093103 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
1 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
* *
34093168 TTGAAGCTAAAAGATAGACCTTCGAACTCCATGAAGACATTTCAACCCAAAAATGTCAAGATCCC
66 TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
*
34093233 ATCCAAAACGTCATCACAATTCTACTAATTTTCTAAGCTTAA
131 ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
34093275 A
1 A
34093276 AATTGGTAGC
Statistics
Matches: 166, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 166 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (172 bp):
AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
Found at i:34096499 original size:43 final size:43
Alignment explanation
Indices: 34096430--34096553 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
34096420 GGCTCGTACA
* * * * * *
34096430 ATGCAAACGTCCCAGACGTGGTCTTACATGTAATCACAGATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAAACACAAATCG
*
34096473 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGAAAACACAAATTG
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACACGAAAACACAAATCG
* *
34096516 ATGCCAACGTCCCAGACGTGGTCTTACACAAAAACACA
1 ATGCCAACGTCCCAAACGTGGTCTTACACGAAAACACA
34096554 TATTGGAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 3 0.04
43 62 0.91
44 3 0.04
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGAAAACACAAATCG
Found at i:34102447 original size:18 final size:17
Alignment explanation
Indices: 34102407--34102448 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
34102397 AAATGTTATA
*
34102407 TATAAAAAAAATTAAGT
1 TATAAAAAAAATTAAAT
34102424 TATAAAACAAAA-TAAAT
1 TATAAAA-AAAATTAAAT
34102441 TATTAAAA
1 TA-TAAAA
34102449 TATGCACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TATAAAAAAAATTAAAT
Found at i:34103467 original size:19 final size:20
Alignment explanation
Indices: 34103438--34103475 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
34103428 ATGAACGAAC
34103438 AAAAAAGAAAAACCGAAAGT
1 AAAAAAGAAAAACCGAAAGT
*
34103458 AAAAAA-AAAAAGCGAAAG
1 AAAAAAGAAAAACCGAAAG
34103476 ATGCAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.74, C:0.08, G:0.16, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAACCGAAAGT
Found at i:34103633 original size:22 final size:25
Alignment explanation
Indices: 34103603--34103657 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
34103593 AAAAAATGTA
34103603 TTTCGTTTTT-CT-CTTATTT-TCTT
1 TTTCGTTTTTGCTGC-TATTTCTCTT
34103626 TTTC-TTTTTGCTGCTATTTCTCTTT
1 TTTCGTTTTTGCTGCTATTTCTC-TT
34103651 TTTCGTT
1 TTTCGTT
34103658 CGTTCGTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 5 0.19
23 11 0.41
24 3 0.11
25 6 0.22
26 2 0.07
ACGTcount: A:0.04, C:0.18, G:0.07, T:0.71
Consensus pattern (25 bp):
TTTCGTTTTTGCTGCTATTTCTCTT
Found at i:34107472 original size:23 final size:23
Alignment explanation
Indices: 34107426--34107472 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
34107416 TAAACTATAT
*
34107426 TAAATTTATTTTATAATTTTATA
1 TAAATTTATTTTATAATTTAATA
*
34107449 TAAATTTACTTTTATGA-TTAATA
1 TAAATTTA-TTTTATAATTTAATA
34107472 T
1 T
34107473 TATAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TAAATTTATTTTATAATTTAATA
Found at i:34107503 original size:7 final size:7
Alignment explanation
Indices: 34107491--34107522 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
34107481 AATTTAAATT
34107491 TTTTTTA
1 TTTTTTA
34107498 TTTTTTA
1 TTTTTTA
34107505 TTTTTTA
1 TTTTTTA
34107512 TTTTTTA
1 TTTTTTA
34107519 TTTT
1 TTTT
34107523 ATTTGATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:34112152 original size:14 final size:15
Alignment explanation
Indices: 34112133--34112165 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
34112123 TCTACTTAAT
34112133 AATATTTTAATA-AA
1 AATATTTTAATAGAA
34112147 AATATTTTAATAGAA
1 AATATTTTAATAGAA
34112162 AATA
1 AATA
34112166 GATTTTCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
AATATTTTAATAGAA
Found at i:34117943 original size:59 final size:59
Alignment explanation
Indices: 34117876--34118061 Score: 145
Period size: 59 Copynumber: 3.1 Consensus size: 59
34117866 CTCAAATCAT
34117876 AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
* * * * *
34117935 AATATATGAT-TTAATAAAAT-T--CTTAATAATCAA-TATTCTTATATGA-ATTTACTAAAATC
1 AATATATGATACT-ATAAAATATAATTTAAT-AT-AATTATTATTAAAT-ATATTT--T--AATT
*
34117994 AT
58 AA
* * *
34117996 AATATATGATAGTATAAAATATAATTTGAA-ATAATAATTATTAAATATAATTTAA-TAA
1 AATATATGATACTATAAAATATAATTT-AATATAATTATTATTAAATATATTTTAATTAA
34118054 TAATATAT
1 -AATATAT
34118062 AATTTCATAA
Statistics
Matches: 97, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
56 5 0.05
57 15 0.15
58 6 0.06
59 27 0.28
61 22 0.23
62 5 0.05
63 13 0.13
64 2 0.02
65 2 0.02
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (59 bp):
AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
Found at i:34117947 original size:18 final size:15
Alignment explanation
Indices: 34117889--34117954 Score: 50
Period size: 16 Copynumber: 4.5 Consensus size: 15
34117879 ATATGATACT
*
34117889 ATAAAATATAATTTA
1 ATAAAATATATTTTA
*
34117904 ATATAAT-TA--TT-
1 ATAAAATATATTTTA
*
34117915 ATTAAATATATTTTA
1 ATAAAATATATTTTA
34117930 ATTAAAATATATGATTTA
1 A-TAAAATATAT--TTTA
34117948 ATAAAAT
1 ATAAAAT
34117955 TCTTAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
11 5 0.12
12 4 0.10
14 4 0.10
15 7 0.17
16 9 0.22
17 6 0.15
18 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
ATAAAATATATTTTA
Found at i:34117993 original size:120 final size:119
Alignment explanation
Indices: 34117780--34118105 Score: 519
Period size: 120 Copynumber: 2.7 Consensus size: 119
34117770 TTAATCATAT
*
34117780 TTTAACATAATTATTATTAAATATATTTTAGTTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
34117845 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
34117900 TTTAATATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
34117965 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATAGTATAAAATATAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
* * * *
34118020 TTTGAAATAATAATTATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCTTGATAA
1 TTT-AAATAATTATTATTAAATATATTTTAATTAA-AATATATAATTTAATAAAATTCTTAATAA
* *
34118084 TAAATTTTCTTATATGAATTTA
64 TCAATATTCTTATATGAATTTA
34118106 TATAATTTAA
Statistics
Matches: 192, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 187 0.97
121 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (119 bp):
TTTAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:34118003 original size:61 final size:60
Alignment explanation
Indices: 34117815--34118005 Score: 198
Period size: 61 Copynumber: 3.2 Consensus size: 60
34117805 TTTTAGTTAA
*
34117815 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACT-AAATCAT
* * * * *
34117876 AATATATGATACT-ATAAAATATAATTTAAT-AT-AATTATTATTAAAT-ATATTT--T-AATTA
1 AATATATGAT-TTAATAAAAT-T--CTTAATAATCAA-TATTCTTATATGA-ATTTACTAAATCA
*
34117934 A
60 T
34117935 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACT-AAATCAT
34117996 AATATATGAT
1 AATATATGAT
34118006 AGTATAAAAT
Statistics
Matches: 103, Mismatches: 13, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
56 5 0.05
57 15 0.15
58 5 0.05
59 22 0.21
61 31 0.30
62 5 0.05
63 15 0.15
64 5 0.05
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (60 bp):
AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAATCAT
Found at i:34118063 original size:44 final size:43
Alignment explanation
Indices: 34118009--34118248 Score: 154
Period size: 44 Copynumber: 5.3 Consensus size: 43
34117999 ATATGATAGT
*
34118009 ATAAAATATAATTTGAAATAATAATTATTAAATATAATTTAATA
1 ATAATATATAATTT-AAATAATAATTATTAAATATAATTTAATA
* * **
34118053 ATAATATATAATTT-CATAA-AATTCTTGATAATA-AATTTTCTTA
1 ATAATATATAATTTAAATAATAATTATT-A-AATATAA-TTTAATA
34118096 TATGAATTTATATAATTTAAAATAATTAA-TATTAAATATAATTTAATA
1 -AT-AA--TATATAATTT-AAATAA-TAATTATTAAATATAATTTAATA
* * * **
34118144 ATGATATATAATTT-CATAA-AATTCTTGATAATA-AATTTTCTTA
1 ATAATATATAATTTAAATAATAATTATT-A-AATATAA-TTTAATA
34118187 TATGAATTTATATAATTTAAAATAATTAA-TATTAAATATAATTTAATA
1 -AT-AA--TATATAATTT-AAATAA-TAATTATTAAATATAATTTAATA
*
34118235 ATGATATATAATTT
1 ATAATATATAATTT
34118249 CATAAAATTC
Statistics
Matches: 151, Mismatches: 20, Indels: 50
0.68 0.09 0.23
Matches are distributed among these distances:
40 2 0.01
41 9 0.06
42 14 0.09
43 18 0.12
44 37 0.25
45 3 0.02
46 2 0.01
47 24 0.16
48 18 0.12
49 14 0.09
50 6 0.04
51 4 0.03
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (43 bp):
ATAATATATAATTTAAATAATAATTATTAAATATAATTTAATA
Found at i:34118108 original size:47 final size:47
Alignment explanation
Indices: 34118057--34118287 Score: 207
Period size: 47 Copynumber: 5.0 Consensus size: 47
34118047 TTAATAATAA
*
34118057 TATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATT
1 TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
** * * *
34118104 TATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGA
1 TATATAATTTCATAAAATTCTTAATAATAAAT-T-TTCTTATATGAAT-T
*
34118148 TATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATT
1 TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
** * * *
34118195 TATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGA
1 TATATAATTTCATAAAATTCTTAATAATAAAT-T-TTCTTATATGAAT-T
*
34118239 TATATAATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATT
1 TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
34118286 TA
1 TA
34118288 CTAAAATCAT
Statistics
Matches: 142, Mismatches: 24, Indels: 36
0.70 0.12 0.18
Matches are distributed among these distances:
43 6 0.04
44 50 0.35
45 14 0.10
46 13 0.09
47 53 0.37
48 6 0.04
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (47 bp):
TATATAATTTCATAAAATTCTTAATAATAAATTTTCTTATATGAATT
Found at i:34118119 original size:91 final size:91
Alignment explanation
Indices: 34118014--34118287 Score: 496
Period size: 91 Copynumber: 3.0 Consensus size: 91
34118004 ATAGTATAAA
* *
34118014 ATATAATTTGAAATAA-TAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCT
1 ATATAATTTAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCT
34118078 TGATAATAAATTTTCTTATATGAATTT
65 TGATAATAAATTTTCTTATATGAATTT
34118105 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
34118170 GATAATAAATTTTCTTATATGAATTT
66 GATAATAAATTTTCTTATATGAATTT
34118196 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
* *
34118261 AATAATAAATATTCTTATATGAATTT
66 GATAATAAATTTTCTTATATGAATTT
34118287 A
1 A
34118288 CTAAAATCAT
Statistics
Matches: 178, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
91 175 0.98
92 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
GATAATAAATTTTCTTATATGAATTT
Found at i:34122790 original size:53 final size:53
Alignment explanation
Indices: 34122727--34122828 Score: 186
Period size: 53 Copynumber: 1.9 Consensus size: 53
34122717 GCAGTGGATT
* *
34122727 TCAAAAACCACAACAAATGATAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
34122780 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGA
1 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGA
34122829 AAGAGAATCG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.60, C:0.14, G:0.20, T:0.07
Consensus pattern (53 bp):
TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
Found at i:34144016 original size:19 final size:21
Alignment explanation
Indices: 34143978--34144016 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
34143968 CCTTTTTTAA
*
34143978 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
34143999 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
34144017 ACAGTAAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:34144220 original size:23 final size:22
Alignment explanation
Indices: 34144192--34144236 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
34144182 AAATTAAATA
34144192 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
34144215 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
34144237 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:34144239 original size:19 final size:19
Alignment explanation
Indices: 34144189--34144268 Score: 97
Period size: 19 Copynumber: 4.0 Consensus size: 19
34144179 TACAAATTAA
*
34144189 ATATCTAAGATTACAAAATC
1 ATATCTAAGATTAC-ATATC
34144209 ATATCTTCTAAGATTACATATC
1 ATA---TCTAAGATTACATATC
*
34144231 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
*
34144250 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
34144269 CTCGAAGATT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
19 34 0.62
20 3 0.05
22 7 0.13
23 11 0.20
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.36
Consensus pattern (19 bp):
ATATCTAAGATTACATATC
Found at i:34144849 original size:174 final size:176
Alignment explanation
Indices: 34144578--34144910 Score: 451
Period size: 174 Copynumber: 1.9 Consensus size: 176
34144568 CTCTAATCTA
* * * * *
34144578 CTCCACTACAACTTAGGGAGACATGATTTGTTTATTTAGTATGCCCCACTGCAATTTGAGGGGGA
1 CTCCACTACAACTTAGGGAGACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGGGAGA
** * *
34144643 TAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTCGA-T-GTGA-TC
66 TAAGACTTGCCATCTTGAGTCTCCTCCACTGCAACTTCAGGAAGATAAGACTCGATTACTGAGTC
*
34144705 TACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
131 TACTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
*
34144751 CTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGGGAG
1 CTCCACTACAACTT-AGGGAGACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGGGAG
* * * * *
34144816 ATAAGA-TTCGCCATCTTTAGTCTTCCT-CACTGCAACTTTAGGAGGATAAGACTTGATTACTTA
65 ATAAGACTT-GCCATCTTGAGTC-TCCTCCACTGCAACTTCAGGAAGATAAGACTCGATTACTGA
*
34144879 GTCTACTCCACTGCAACTTCAGGGAGATAAGA
128 GTCTACTCCACTGCAACTTCAGAGAGATAAGA
34144911 CTAGATGCGA
Statistics
Matches: 137, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
173 15 0.11
174 87 0.64
175 4 0.03
176 2 0.01
177 29 0.21
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (176 bp):
CTCCACTACAACTTAGGGAGACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGGGAGA
TAAGACTTGCCATCTTGAGTCTCCTCCACTGCAACTTCAGGAAGATAAGACTCGATTACTGAGTC
TACTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
Found at i:34144962 original size:217 final size:219
Alignment explanation
Indices: 34144624--34145089 Score: 654
Period size: 217 Copynumber: 2.1 Consensus size: 219
34144614 TAGTATGCCC
* * * *
34144624 CACTGCAA-TTTGAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGAAGA
1 CACTGCAACTTT-AGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACTTCAGGAAGA
* * ** *
34144688 TAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCT
65 TAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
* * *
34144753 CCACTGCAACTTCAGGGAGACAGGATT-T-GTTTATTTAATATGCCCCACTGCAACTTCAGGGAG
130 CCACTGCAACTTCAGGAAGACAGGATTATCG--GATTTAACATGCCCCACTGCAACTTCAGGGAG
* *
34144816 ATAAGATTCGCCATCTTTAGTCTTCCT
193 ATAAGATTCGCCATCTTCAGTCTACCT
*
34144843 CACTGCAACTTTAGGAGGATAAGACTTGATTACTT-AGTCTACTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTTAGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACTTCAGGAAGAT
* *
34144907 AAGACTAGATGCGATCTGCTCT-CTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTC
66 AAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
* * * * *
34144971 CACTGTAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATA
131 CACTGCAACTTCAGGAAGACAGGATTATCGGATTTAACATGCCCCACTGCAACTTCAGGGAGATA
*
34145036 AGATTTGCCATCTTCAGTCTACCT
196 AGATTCGCCATCTTCAGTCTACCT
*
34145060 CACTGCAACTTCAGGAGGATAAGACTTGAT
1 CACTGCAACTTTAGGAGGATAAGACTTGAT
34145090 GCGATCTGCT
Statistics
Matches: 220, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
217 141 0.64
218 47 0.21
219 29 0.13
220 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (219 bp):
CACTGCAACTTTAGGAGGATAAGACTTGATTACTTGAGTCTACTCCACTGCAACTTCAGGAAGAT
AAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
CACTGCAACTTCAGGAAGACAGGATTATCGGATTTAACATGCCCCACTGCAACTTCAGGGAGATA
AGATTCGCCATCTTCAGTCTACCT
Found at i:34144972 original size:84 final size:84
Alignment explanation
Indices: 34144883--34145769 Score: 270
Period size: 84 Copynumber: 10.3 Consensus size: 84
34144873 TACTTAGTCT
* *
34144883 ACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATA
1 ACTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
34144948 AGATCTAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
* * * * *** * * *
34144967 ACTCCACTGTAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCAGGAAGATAAGACTA---GATGCGATCTGCT-CTCTGCAACTTCAGAGA
* **** * * *
34145032 GATAAGATTTGCCATCTTCAGTCT
62 GATAAGATCTAAGGT-TTTAATCC
* * * *
34145056 AC-CTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGAT
1 ACTC-CACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
* *
34145120 AAGATCCAGGGTTTTAATCC
65 AAGATCTAAGGTTTTAATCC
* * * *** * * *
34145140 ACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCAGGAAGATAAGACTA---GATGCGATCTGCT-CTCTGCAACTTCAGAGA
* * *
34145205 GATAAGAT-T-TGCTATCTTCAGTCTGC
62 GATAAGATCTAAGGT-T-TT-AATC--C
* * * * *
34145231 -CT-CACTGCAACTTCAGGAGGATAAGACTTGCTTGCTTAGTCTGCTC-CATTGCAACTTCAGGG
1 ACTCCACTGCAACTTCAGGAAGATAAGACTAG-ATGC-GA-TCTGCTCTC--TGCAACTTCAGAG
* * * *
34145293 AGATAAGA-CT-A-GATGTGATCT
61 AGATAAGATCTAAGGTTTTAATCC
* * * * * *** * * *
34145314 GCT-CTCTACAACTTCA-AAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGG
1 ACTCCACTGCAACTTCAGGA-AGATAAGA-CT-AGA-TGCGATCTGCT-CTCTGCAACTTCAGAG
* ** * *
34145377 AGATAGGAT-TGTCGGCTTTAATCT
61 AGATAAGATCT-AAGGTTTTAATCC
* * * * * * * *
34145401 GCTCCACTACAACCTCAGGGAGATAAGATTTACCAT-CTTCAGTCTGGCTCACTGCAACTTCAG-
1 ACTCCACTGCAACTTCAGGAAGATAAGA-CTA-GATGC--GA-TCT-GCTCTCTGCAACTTCAGA
* * * *
34145464 GAGGATAAGA-CT-TGCTTACTTAGTCT
60 GA-GATAAGATCTAAGGTT--TTAATCC
* * *
34145490 GCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATA
1 ACTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
*
34145555 AGATCCAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
* * * * * * * ** *
34145574 -GTTCACTGCAACTTCAGCG-AGATAGGATTACCA-GCTTTAATCTGCTCCACTGTGACTT-AGG
1 ACTCCACTGCAACTTCAG-GAAGATAAGACTA-GATGC---GATCTGCT-CTCTGCAACTTCAGA
* **** * *
34145635 GAGATAAGATTTGCCATCTTCAGTCTGC
60 GAGATAAGATCTAAGGT-TTTAATC--C
* * * * *
34145663 -CT-CACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCTCTGTAACTTAAGAGAGATA
1 ACTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
*
34145726 AGATCCAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
** * *
34145745 ACTTTACTACAAATTCAGGAAGATA
1 ACTCCACTGCAACTTCAGGAAGATA
34145770 GGATTGTCGG
Statistics
Matches: 587, Mismatches: 154, Indels: 124
0.68 0.18 0.14
Matches are distributed among these distances:
82 1 0.00
83 29 0.05
84 164 0.28
85 56 0.10
86 41 0.07
87 50 0.09
88 101 0.17
89 139 0.24
90 5 0.01
91 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (84 bp):
ACTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
AGATCTAAGGTTTTAATCC
Found at i:34145152 original size:217 final size:214
Alignment explanation
Indices: 34144706--34145692 Score: 837
Period size: 217 Copynumber: 4.6 Consensus size: 214
34144696 GATGTGATCT
* ** *
34144706 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCAGAGAGATAAGAT-TACGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* * ** * * * *
34144771 GACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGG-GAGATAAGA-TTCGCCAT-CTT
65 GATAAGATTT-CATCTTCAATCTGCTCCACTGCAACTTCAGGAG-GATAAGACTT-G-CATAC-T
* * * * * *
34144833 TAGTCTTCCT-CACTGCAACTTTA-GGAGGATAAGACTTGATTACTTAGTCTACTCCACTGCAAC
125 TAGTC-TCCTCCACTGCAACTTCAGGGA-GATAAGACTAGA-TGC-GA-TCTGCT-CTCTGCAAC
* * * * *** *
34144896 TTCAGGGAGATAAGA-CTA--GATGCGATCT
184 TCCAGAGAGATAAGATCCAGGGTTTTAATCC
* * * * * * * *
34144924 GCT-CTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGTAACTTCAGGAA
1 ACTCCACTGCAACTTCAGAGAGATAAGAT-TACGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* ** * * *
34144988 GATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGG-GAGATAAGATTTGCCAT-CTTC
65 GATAAGATT-TCATCTTCAATCTGCTCCACTGCAACTTCAGGAG-GATAAGACTTG-CATACTT-
* *
34145051 AGTCTACCT-CACTGCAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGG
126 AGTCT-CCTCCACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTCCAG
34145114 AGAGATAAGATCCAGGGTTTTAATCC
189 AGAGATAAGATCCAGGGTTTTAATCC
*
34145140 ACTCCACTGCAACTTCAG-GAAGATAGGATTATCGGCTTTAA-CCTGCTCCACTGCAACTTCAGG
1 ACTCCACTGCAACTTCAGAG-AGATAAGATTA-CGGCTTTAATCC-GCTCCACTGCAACTTCAGG
* * *
34145203 GAGATAAGATTTGCTATCTTCAGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTGCT
63 GAGATAAGATTT-C-ATCTTCAATCTGCTC-CACTGCAACTTCAGGAGGATAAGACTTGCATACT
* * * * * *
34145267 TAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTACAACTTCAAA
125 TAGTCTCCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTCCAGA
* *
34145332 GAGATAAGAT-CTGTGATTTTAATCC
190 GAGATAAGATCCAG-GGTTTTAATCC
* * * * * * *
34145357 GCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGA
1 ACTCCACTGCAACTTCAGAGAGATAAGATT-ACGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* *
34145422 GATAAGATTTACCATCTTCAGTCTGGCT-CACTGCAACTTCAGGAGGATAAGACTTGCTTACTTA
65 GATAAGATTT--CATCTTCAATCT-GCTCCACTGCAACTTCAGGAGGATAAGACTTGCATACTTA
* * *
34145486 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGA
127 GTCTCCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTCCAGAGA
*
34145551 GATAAGATCCAAGGTTTTAATCC
192 GATAAGATCCAGGGTTTTAATCC
* * * * * * **
34145574 -GTTCACTGCAACTTCAGCGAGATAGGATTACCAGCTTTAATCTGCTCCACTGTGACTT-AGGGA
1 ACTCCACTGCAACTTCAGAGAGATAAGATTA-CGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
*
34145637 GATAAGATTTGCCATCTTCAGTCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTG
65 GATAAGATTT--CATCTTCAATCTGCTC-CACTGCAACTTCAGGAGGATAAGACTTG
34145693 ATGCAATCTG
Statistics
Matches: 657, Mismatches: 83, Indels: 61
0.82 0.10 0.08
Matches are distributed among these distances:
213 20 0.03
214 9 0.01
215 57 0.09
216 70 0.11
217 450 0.68
218 50 0.08
219 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (214 bp):
ACTCCACTGCAACTTCAGAGAGATAAGATTACGGCTTTAATCCGCTCCACTGCAACTTCAGGGAG
ATAAGATTTCATCTTCAATCTGCTCCACTGCAACTTCAGGAGGATAAGACTTGCATACTTAGTCT
CCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTCCAGAGAGATA
AGATCCAGGGTTTTAATCC
Found at i:34145158 original size:390 final size:385
Alignment explanation
Indices: 34144623--34145865 Score: 1393
Period size: 390 Copynumber: 3.2 Consensus size: 385
34144613 TTAGTATGCC
* * * * ** * *
34144623 CCACTGCAATTTGAGGGGGATAAGACTTGCTTTCTTGAGTCTG-CTCCACTGCAACTTCAGGAAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT-CACTGCAACTTCAGGAGG
* * * * * *
34144687 ATAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGAT-CTGTGGTTTTAATCCG
65 ATAAGACTTGATGCGATCTGCTCT-CTGCAACTCCGGAGAGATAAGATCCAG-GGTTTTAATCCG
* * *
34144751 CTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAATATGCCCCACTGCAACTTCAGGGAG
128 CTCCACTGCAACTTCAGGGAGATAGGATTTG--T-TTTAATCTGCTCCACTGCAACTTCAGGGAG
34144816 ATAAGATTCGCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGATAAGACTTGATTACTTAGT
190 ATAAGATT-GCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGATAAGACTTGATT-CTTAGT
* *
34144881 CTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGA
253 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTAAGAGAGA
* * *
34144946 TAAGATCTAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATCGGCTTTAACCT
318 TAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCTTTAATCT
34145011 GCT
383 GCT
*
34145014 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
*
34145079 TAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAAGATCCAGGGTTTTAATCCACTC
66 TAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAAGATCCAGGGTTTTAATCCGCTC
* * *
34145144 CACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATA
131 CACTGCAACTTCAGGGAGATAGGATT-T--GTTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
34145209 AGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTGCTTAGTCTG
193 AGA-TTGCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGATAAGACTTGATT-CTTAGTCTG
* * *
34145274 CTCCATTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTACAACTTCAA-AGAGATA
256 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTT-AAGAGAGATA
** * * *
34145338 AGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGC
320 AGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCTTTAATCTGC
34145403 T
385 T
* * * *
34145404 CCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTGGCTCACTGCAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
* * * * * * * **
34145469 TAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG-GAGATAAGA-CTA--GATGCAATC
66 TAAGACTTG-ATGC-GA-TCTGCT-CTCTGCAAC-TCCGGAGAGATAAGATCCAGGGTTTTAATC
* * * * ** * * *
34145530 TGCT-CTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCG-TTCACTGCAACTTCAGCG
126 CGCTCCACTGCAACTTCAGGGAGATAGGAT---TTGTTTTAATCTGCTCCACTGCAACTTCAGGG
* * * * * ** *
34145593 AGATAGGATTACCAGCTTTAATC-TGCTCCACTGTGAC-TTAGG-GAGATAAGATTTGCCA-TCT
188 AGATAAGATTGCCATCTTTAGTCTTCCT-CACTGCAACTTTAGGAG-GATAAGACTTG--ATTCT
* * *
34145654 TCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGATGCAATCTGCTCTCTGTAACTTA
249 T-AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTA
* ** * *
34145717 AGAGAGATAAGATCCAAGGTTTTAATCCACTTTACTACAAATTCAGGAAGATAGGATTGTCGGCT
311 AGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCT
34145782 TTAATCTGCT
376 TTAATCTGCT
*
34145792 CCATTGCAACCTT-AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
1 CCACTGCAA-CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
34145856 ATAAGACTTG
65 ATAAGACTTG
34145866 CTTACTTAGT
Statistics
Matches: 726, Mismatches: 102, Indels: 51
0.83 0.12 0.06
Matches are distributed among these distances:
386 1 0.00
387 25 0.03
388 195 0.27
389 25 0.03
390 358 0.49
391 89 0.12
392 3 0.00
393 9 0.01
394 17 0.02
395 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (385 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAAGATCCAGGGTTTTAATCCGCTC
CACTGCAACTTCAGGGAGATAGGATTTGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTGCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGATAAGACTTGATTCTTAGTCTGCTCCA
CTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTAAGAGAGATAAGATCT
AAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCTTTAATCTGCT
Found at i:34145259 original size:173 final size:173
Alignment explanation
Indices: 34144878--34145260 Score: 653
Period size: 173 Copynumber: 2.2 Consensus size: 173
34144868 TTGATTACTT
* **
34144878 AGTCTA-CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAG
1 AGTCTACCT-CACTGCAACTTCAGGAG-GATAAGACTTGATGCGATCTGCTCTCTGCAACTCCAG
* *
34144941 AGAGATAAGATCTAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATCGGCTTT
64 AGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTT
34145006 AACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
129 AACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
*
34145051 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAG
1 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCAGAG
*
34145116 AGATAAGATCCAGGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
66 AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
*
34145181 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
131 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
*
34145224 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
1 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTG
34145261 CTTGCTTAGT
Statistics
Matches: 199, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
173 196 0.98
174 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (173 bp):
AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCAGAG
AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
Found at i:34145363 original size:173 final size:172
Alignment explanation
Indices: 34144878--34145386 Score: 554
Period size: 173 Copynumber: 2.9 Consensus size: 172
34144868 TTGATTACTT
* *
34144878 AGTCTA-CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTA-
1 AGTCTACCT-CACTGCAACTTCAGGAG-GATAAGACTTGATGCGATCTGCTCTCTGCAAC-TCAG
* * * ** * * *
34144940 GAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATCGGCTT
63 GAGAGATAAGATC-CAGGATGTAATCCACTCCACTACAACTTCAAGAAGATAAGATTATCGACTT
34145005 TAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
127 TAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
*
34145051 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAG
1 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCAGGAG
* * * * * *
34145116 AGATAAGATCCAGGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
66 AGATAAGATCCA-GGATGTAATCCACTCCACTACAACTTCAAGAAGATAAGATTATCGACTTTAA
*
34145181 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
130 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
* * *
34145224 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTGCTTAGTCTGCTC-CATTGCAACTT
1 AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTG-ATGC-GA-TCTGCTCTC--TGCAAC-T
* * ** * *
34145288 CAGG-GAGATAAGA-CTA-GATGTGATCTGCT-CTCTACAACTTCAA-AGAGATAAGATCTGT-G
60 CAGGAGAGATAAGATCCAGGATGTAATCCACTCCACTACAACTTCAAGA-AGATAAGAT-TATCG
* *
34145347 ATTTTAATCC-GCTCCACTGCAACTTCAGGGAGATAGGATT
123 ACTTTAA-CCTGCTCCACTGCAACTTCAGGGAGATAAGATT
34145387 GTCGGCTTTA
Statistics
Matches: 299, Mismatches: 24, Indels: 26
0.86 0.07 0.07
Matches are distributed among these distances:
172 3 0.01
173 248 0.83
174 18 0.06
175 2 0.01
176 9 0.03
177 15 0.05
178 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (172 bp):
AGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCAGGAG
AGATAAGATCCAGGATGTAATCCACTCCACTACAACTTCAAGAAGATAAGATTATCGACTTTAAC
CTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
Found at i:34145845 original size:45 final size:43
Alignment explanation
Indices: 34145786--34145903 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 43
34145776 TCGGCTTTAA
* *
34145786 TCTGCTCCATTGCAACCTT-AGGGAGATAAGATTTGCCAT-CTTCAG
1 TCTGCTCCACTGCAA-CTTCA-GGAGATAAGACTTG-CATACTT-AG
*
34145831 TCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGA-GATAAGACTTGCATACTTAG
34145875 TCTGCTCCACTGCAACTTCAAGGAGATAA
1 TCTGCTCCACTGCAACTTC-AGGAGATAA
34145904 TACTAGATGC
Statistics
Matches: 64, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
44 33 0.52
45 31 0.48
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGAGATAAGACTTGCATACTTAG
Found at i:34145856 original size:173 final size:171
Alignment explanation
Indices: 34145405--34145865 Score: 585
Period size: 171 Copynumber: 2.7 Consensus size: 171
34145395 TAATCTGCTC
** * * * * *
34145405 CACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTGGCT-CACTGCAACTTCA-GGAGG
1 CACTACAAATTCAGCGAGATAGGA-TTACCAGCTTTAATCT-GCTCCACTGCAACTT-AGGGA-G
* * *
34145468 ATAAGACTTG-CTTACTT-AGTCTG-CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCAAT
62 ATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCAGGAG-GATAAGACTTGATGCAAT
* *
34145529 CTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGTT
124 CTGCTCTCTGCAACTTAAGAGAGATAAGATCCAAGGTTTTAATCCCTT
* * **
34145577 CACTGCAACTTCAGCGAGATAGGATTACCAGCTTTAATCTGCTCCACTGTGACTTAGGGAGATAA
1 CACTACAAATTCAGCGAGATAGGATTACCAGCTTTAATCTGCTCCACTGCAACTTAGGGAGATAA
34145642 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCT
66 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCT
*
34145707 CTGTAACTTAAGAGAGATAAGATCCAAGGTTTTAATCCACTT
131 CTGCAACTTAAGAGAGATAAGATCCAAGGTTTTAATCC-CTT
* ** * *
34145749 TACTACAAATTCAG-GAAGATAGGATTGTCGGCTTTAATCTGCTCCATTGCAACCTTAGGGAGAT
1 CACTACAAATTCAGCG-AGATAGGATTACCAGCTTTAATCTGCTCCACTGCAA-CTTAGGGAGAT
34145813 AAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
64 AAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
34145866 CTTACTTAGT
Statistics
Matches: 256, Mismatches: 24, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
170 17 0.07
171 109 0.43
172 66 0.26
173 64 0.25
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (171 bp):
CACTACAAATTCAGCGAGATAGGATTACCAGCTTTAATCTGCTCCACTGCAACTTAGGGAGATAA
GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCT
CTGCAACTTAAGAGAGATAAGATCCAAGGTTTTAATCCCTT
Found at i:34145887 original size:44 final size:45
Alignment explanation
Indices: 34145786--34145903 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 45
34145776 TCGGCTTTAA
* *
34145786 TCTGCTCCATTGCAACCTT-AGG-GAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAA-CTTCAGGAG-GATAAGACTTGCCATCTTCAG
*
34145831 TCTGC-CTCACTGCAACTTCAGGAGGATAAGACTTG-CTTACTT-AG
1 TCTGCTC-CACTGCAACTTCAGGAGGATAAGACTTGCCAT-CTTCAG
34145875 TCTGCTCCACTGCAACTTCAAGGA-GATAA
1 TCTGCTCCACTGCAACTTC-AGGAGGATAA
34145904 TACTAGATGC
Statistics
Matches: 64, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
44 30 0.47
45 33 0.52
46 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGAGGATAAGACTTGCCATCTTCAG
Found at i:34146127 original size:132 final size:131
Alignment explanation
Indices: 34145976--34146388 Score: 659
Period size: 132 Copynumber: 3.1 Consensus size: 131
34145966 CACTGCAACT
* * *
34145976 TCAGGGAGACAAGGTTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATATGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
34146041 TCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCT
66 TCTTCGATCT-ATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCT
34146106 GC
130 GC
* *
34146108 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * *
34146173 TCTTCAATCTTCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
66 TCTTCGATC-TATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCT
34146238 GC
130 GC
*
34146240 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAGTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* *
34146305 TCCTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACGATTCTT-AACCTAC-TCTGCTG
66 TCTTCGATCTA-TCCACTACTGCTTAGGGAGATAAGATCTAC-AATCTTCAACCTACTTC-GCTG
*
34146368 TTGC
128 CTGC
34146372 TCAGGGAGACAAGGCTT
1 TCAGGGAGACAAGGCTT
34146389 AGTGTTTCAC
Statistics
Matches: 260, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
131 2 0.01
132 252 0.97
133 6 0.02
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (131 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
TCTTCGATCTATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCTG
C
Found at i:34146206 original size:44 final size:44
Alignment explanation
Indices: 34146026--34146342 Score: 134
Period size: 44 Copynumber: 7.2 Consensus size: 44
34146016 TATCTTGGAA
* * *
34146026 AGATATGATTTGCCGTCTTCGATCTGA-TCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCT-ACTCCACTACTGCTTAGGG
* * * * * * *
34146070 AGATAAGATCT-ACAATCTTCAACCTACTTCGCTGCTGCTTAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTACTCCACTACTGCTTAGGG
* * * * * * *
34146114 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTAC-T-CCACTACTGCTTAGG-G
*
34146158 AGATAAGATTTGTCGTCTTCAATCTTCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTACTCCACTACTGCTTAGGG
* * * * * * *
34146202 AGATAAGATCT-ACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTACTCCACTACTGCTTAGGG
* * * * * * * *
34146246 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCAGTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTAC-T-CCACTACTGCTTAGG-G
* * *
34146290 AGATAAGATTTGCCGTCCTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTACTCCACTACTGCTTAGGG
34146334 AGATAAGAT
1 AGATAAGAT
34146343 CTACGATTCT
Statistics
Matches: 188, Mismatches: 64, Indels: 42
0.64 0.22 0.14
Matches are distributed among these distances:
42 11 0.06
43 20 0.11
44 139 0.74
45 12 0.06
46 6 0.03
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTCAATCTACTCCACTACTGCTTAGGG
Found at i:34151821 original size:23 final size:23
Alignment explanation
Indices: 34151790--34151835 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
34151780 AAGATTTAAG
*
34151790 AAATTGTATCTTCTAAGATTACA
1 AAATCGTATCTTCTAAGATTACA
34151813 AAATCGTATCTTCTAAGATTACA
1 AAATCGTATCTTCTAAGATTACA
34151836 TATCATATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (23 bp):
AAATCGTATCTTCTAAGATTACA
Found at i:34151848 original size:19 final size:19
Alignment explanation
Indices: 34151824--34151879 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
34151814 AATCGTATCT
34151824 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
34151843 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
34151864 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
34151880 CTCGAAGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
21 18 0.56
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:34151861 original size:21 final size:21
Alignment explanation
Indices: 34151835--34151878 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
34151825 CTAAGATTAC
34151835 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
34151856 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
34151877 AT
1 AT
34151879 CCTCGAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:34154710 original size:3 final size:3
Alignment explanation
Indices: 34154702--34154727 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
34154692 TTAAACTACT
34154702 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
34154728 TTATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:34156104 original size:531 final size:527
Alignment explanation
Indices: 34154890--34156402 Score: 1868
Period size: 531 Copynumber: 2.8 Consensus size: 527
34154880 ATTATAAAAC
* * * *
34154890 ATTAGTAATGAAAATTAAAAAAGGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAG-
1 ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGC
* * *
34154954 TAGGCAAAAACAAAAACATTTCCAT-CTTTTCTTCGTGCAAACCGAACCAAGGGAGAAAGAAGAG
66 T-GGGAAAAACAAAAACATTTCCATCCTTTT-TTCGTGCAAACCGAACAAAGGGAGAAAGAAGAA
* * * * *
34155018 ACGAACATTCGACTTTAAGGGTGTAACGCCCCAAAAAATTTTCTTTTTGCAAA-TGTTAAAACAT
129 ACGAACATTCGACTTTAAAGGTGTAACGCCCCTAAAAATTTTATTCTTG-AAATTGTTAAAATAT
* * * ** * *
34155082 GTCAATG-GTGTAACGTTTGACTTTGTAAATATTTTTTATAGGAGAAACTGCCGCCTGATTCGAC
193 GTCAA-GAGTGTAACGTTCGGCTTTGAAAATATTTTTTATATAAGAAACTGCCACCTGATACGAC
* * * * * * *
34155146 GGTTTCATCCATTATGTTGTCTTATTATAAAAATATTATT-ATTTTATCATGATATTGTTTCGGA
257 GGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTCATTTTATCATGAAATTCTTGCAGA
* * * *
34155210 GGCAATTTTAACAAAAAAAAACTAATACAAC-AGTTTCACCCATTGTGTCATCTTGTTATAAAAT
322 GGCAATTTTAACAAAAAAAAATTGATACGACGA-TTTCACCCATTGTATCATCTTGTTATAAAAT
* * * * *
34155274 ATTATTATTTTTATCATGAAACTGTTGTAAACCCATTGTGCCATCTTATAATTTGCTTAAGGATT
386 ATTATTA-TTTTATCATGAAACTCTTGTAAACCTATTGTGCCATCTTGTAATTTGCTTAAGAATG
* * * * *
34155339 TATAATTAGATCTTAATTGAAAGGGGCTAAATAGTAATTATACCT--AATATATATA-TGGCTGG
450 TATAATTAGAACTTAATTTAAAGGGGTTAAATAGAAATTATACCTAGAATATATA-ACTGGCCGG
*
34155401 TTATTGAAGTAAGTAAGTATGTTATATTAT
514 ---TT-AA-T--G--A--A-G-T-TA--GT
*
34155431 AAAACGTTAGTAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGA
1 ---A--TTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGA
34155496 ATAGCTGGGAAAAACAAAAACATTTCCATCCTTTTTTCGTGCAAACCGAACAAAGGGAGAAAGAA
61 ATAGCTGGGAAAAACAAAAACATTTCCATCCTTTTTTCGTGCAAACCGAACAAAGGGAGAAAGAA
* *
34155561 GAAACGAACATTC-ATCTTTAAAGGTGTAACG-CCCTAAAAAATTTTGTTCTTGGAATTGTTAAA
126 GAAACGAACATTCGA-CTTTAAAGGTGTAACGCCCCT-AAAAATTTTATTCTTGAAATTGTTAAA
* * * ** *
34155624 ACT-TGTCAAGAGTGTAATGTTTGGCTTTGAAAATATTTTTTATGTAAGAAACTGCTGCCTGATT
189 A-TATGTCAAGAGTGTAACGTTCGGCTTTGAAAATATTTTTTATATAAGAAACTGCCACCTGATA
* * * * *
34155688 TGACGGTTTCACCCATTGTGTCGTTTTATTATAAAAATATTATTATTATTATTATTATGAAATTG
253 CGACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTA-T-TCATT-TTATCATGAAATTC
* * * * *
34155753 TTGCAGAGGCAATTTTAACAAAAAAAAATTGATACGACGCTTTCACCGATTTTGTCATTTTGTTA
315 TTGCAGAGGCAATTTTAACAAAAAAAAATTGATACGACGATTTCACCCATTGTATCATCTTGTTA
* * *
34155818 TAAAATATTATTATTTTTATCATGGAACTCTTGT-AATCTCATTGTGTCATCTTGTAATTTGCTT
380 TAAAATATTATTA-TTTTATCATGAAACTCTTGTAAACCT-ATTGTGCCATCTTGTAATTTGCTT
34155882 AAGAATGTATAATTAGAACTTAATTTAAAGGGGTTAAATAGAAATTATACCTAGAATATATAACT
443 AAGAATGTATAATTAGAACTTAATTTAAAGGGGTTAAATAGAAATTATACCTAGAATATATAACT
34155947 GGCCGGTTAATGAAGTTAGT
508 GGCCGGTTAATGAAGTTAGT
*
34155967 ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGG
1 ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGC
* * * *
34156032 TGGTAAAAACAAAAATATTTCCAT-CTTTTCTTCGTGCAAACCGAACCAAGGGAGAAAGAAGAGA
66 TGGGAAAAACAAAAACATTTCCATCCTTTT-TTCGTGCAAACCGAACAAAGGGAGAAAGAAGAAA
* * ** *
34156096 -GAAACATTCGACTTTTAGGGTGTAACGCCCCTAAAGTTTTTATTTTTGAAATTGTTAAAATATG
130 CG-AACATTCGACTTTAAAGGTGTAACGCCCCTAAAAATTTTATTCTTGAAATTGTTAAAATATG
* *
34156160 TCAAGGGTGTAACGTTCGGCTTTGAAAATATTTTTTATATGAGAAACTGCCACCTGATACGACGG
194 TCAAGAGTGTAACGTTCGGCTTTGAAAATATTTTTTATATAAGAAACTGCCACCTGATACGACGG
* **
34156225 TTTCACCCATTTTGTCGTCTTATTATAAAAATATTATTCATTTTATCATGAAATTCTTGTTGAGG
259 TTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTCATTTTATCATGAAATTCTTGCAGAGG
34156290 CAATTTTAACAAAAAAAAATTGATACGACGATTTCACCCATTGTATCATCTTGTTATAAAATATT
324 CAATTTTAACAAAAAAAAATTGATACGACGATTTCACCCATTGTATCATCTTGTTATAAAATATT
*
34156355 ATTATTTTATCATGAAACTGTTGTAAACCTATTGTGCCATCTTGTAAT
389 ATTATTTTATCATGAAACTCTTGTAAACCTATTGTGCCATCTTGTAAT
34156403 CACTACACCA
Statistics
Matches: 858, Mismatches: 87, Indels: 65
0.85 0.09 0.06
Matches are distributed among these distances:
527 35 0.04
528 87 0.10
529 4 0.00
530 8 0.01
531 252 0.29
532 5 0.01
533 1 0.00
536 1 0.00
538 2 0.00
539 1 0.00
540 1 0.00
541 1 0.00
543 1 0.00
544 1 0.00
545 8 0.01
546 249 0.29
547 8 0.01
548 3 0.00
549 8 0.01
550 167 0.19
551 1 0.00
552 14 0.02
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (527 bp):
ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGC
TGGGAAAAACAAAAACATTTCCATCCTTTTTTCGTGCAAACCGAACAAAGGGAGAAAGAAGAAAC
GAACATTCGACTTTAAAGGTGTAACGCCCCTAAAAATTTTATTCTTGAAATTGTTAAAATATGTC
AAGAGTGTAACGTTCGGCTTTGAAAATATTTTTTATATAAGAAACTGCCACCTGATACGACGGTT
TCACCCATTGTGTCGTCTTATTATAAAAATATTATTCATTTTATCATGAAATTCTTGCAGAGGCA
ATTTTAACAAAAAAAAATTGATACGACGATTTCACCCATTGTATCATCTTGTTATAAAATATTAT
TATTTTATCATGAAACTCTTGTAAACCTATTGTGCCATCTTGTAATTTGCTTAAGAATGTATAAT
TAGAACTTAATTTAAAGGGGTTAAATAGAAATTATACCTAGAATATATAACTGGCCGGTTAATGA
AGTTAGT
Found at i:34156633 original size:41 final size:41
Alignment explanation
Indices: 34156575--34156875 Score: 392
Period size: 41 Copynumber: 7.4 Consensus size: 41
34156565 CGTCCTTTTT
* *
34156575 GGGCTTTAGCGGGGTTTTTGGAAAAGCGCCACTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
* * *
34156616 GGGCTTTAGCGGCGTTTTT-TAGAAAGTGCCGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTGGA-AAAGCGCCGCTAATGCTCG
*
34156657 GGGCTTTAGCGGC-CTTTTGGAAATA-CGCCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGGAAA-AGCGCCGCTAATGCTCG
* *
34156697 GGGCTTTAGCGGCGTTTTTGGGAAAGCGTCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
* **
34156738 GGGCTTTAGCGGCGTTTTTAGAAAAGCATCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
* *
34156779 GGGCTTTAGCGGCGTTTTTGGGAAAGCGCCACTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
* * * *
34156820 GGGCTTTAGCGACGTTTTTGGGAAAGCGCTGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
* *
34156861 GGGATTTAGCAGCGT
1 GGGCTTTAGCGGCGT
34156876 GTTTATAAAA
Statistics
Matches: 228, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
40 34 0.15
41 194 0.85
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCG
Found at i:34157333 original size:14 final size:14
Alignment explanation
Indices: 34157316--34157350 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
34157306 ACGTTTAGGG
34157316 GTTAGGGGTT-AGA
1 GTTAGGGGTTAAGA
34157329 CGTTAGGGGTTAAGA
1 -GTTAGGGGTTAAGA
34157344 GTTAGGG
1 GTTAGGG
34157351 ATTGAGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.46, T:0.29
Consensus pattern (14 bp):
GTTAGGGGTTAAGA
Found at i:34157590 original size:15 final size:14
Alignment explanation
Indices: 34157538--34157586 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
34157528 ACTATTTTAA
**
34157538 GGTTTAGGGGGTAT
1 GGTTTAGGGATTAT
34157552 GGATTTAGGGATTAT
1 GG-TTTAGGGATTAT
*
34157567 GGATTAGGGATTAT
1 GGTTTAGGGATTAT
34157581 GGTTTA
1 GGTTTA
34157587 AGGGTTGGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:34157705 original size:20 final size:21
Alignment explanation
Indices: 34157658--34157705 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
34157648 TAAAGAATTA
*
34157658 GGGTTTAGGGATTTATGGGTT
1 GGGTTTAGGGATTAATGGGTT
**
34157679 GGG-TTAGGG-TTAATGTTTT
1 GGGTTTAGGGATTAATGGGTT
34157698 GGGTTTAG
1 GGGTTTAG
34157706 ATTAAATAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 10 0.43
20 10 0.43
21 3 0.13
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.44
Consensus pattern (21 bp):
GGGTTTAGGGATTAATGGGTT
Found at i:34161889 original size:43 final size:43
Alignment explanation
Indices: 34161836--34161998 Score: 188
Period size: 43 Copynumber: 3.8 Consensus size: 43
34161826 TTTTTGCGAG
* *
34161836 AAGCGTTGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTGATAAA
1 AAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTGAT-AA
*
34161879 AAGCGCTGCTAAAGGTCATT-TT-TTTAGCGGCGTTTGTGGTAA
1 AAGCGCTGCTAAAGGTC-TTGTTCTTTAGCGGCGTTTGTGATAA
* **
34161921 AAGCGCTGCTAAAGGTCATGACCTTTAGCGGCGTTTGTGATAA
1 AAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTGATAA
* * * * *
34161964 AAGCGCCGCTAAAGGCCATGATCTTTAACGGCGTT
1 AAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTT
34161999 GTCTATAGCG
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.01
42 19 0.18
43 81 0.77
44 2 0.02
45 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
AAGCGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTGTGATAA
Found at i:34161936 original size:42 final size:43
Alignment explanation
Indices: 34161860--34161998 Score: 190
Period size: 43 Copynumber: 3.2 Consensus size: 43
34161850 GTTTGTTCTA
***
34161860 TAGCGGCGTTTGTGATAAAAAGCGCTGCTAAAGGTCAT-TTTTT
1 TAGCGGCGTTTGTGAT-AAAAGCGCTGCTAAAGGTCATGACCTT
*
34161903 TAGCGGCGTTTGTGGTAAAAGCGCTGCTAAAGGTCATGACCTT
1 TAGCGGCGTTTGTGATAAAAGCGCTGCTAAAGGTCATGACCTT
* * *
34161946 TAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGCCATGATCTT
1 TAGCGGCGTTTGTGATAAAAGCGCTGCTAAAGGTCATGACCTT
*
34161989 TAACGGCGTT
1 TAGCGGCGTT
34161999 GTCTATAGCG
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 21 0.24
43 65 0.76
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTGTGATAAAAGCGCTGCTAAAGGTCATGACCTT
Found at i:34164899 original size:549 final size:545
Alignment explanation
Indices: 34162926--34165072 Score: 2636
Period size: 548 Copynumber: 3.9 Consensus size: 545
34162916 CGACAGTTAC
* * * * * *
34162926 ACCCATTGTGTCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTGAATTTTAAGGGGTTAA
1 ACCCATTGCGTCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAATTTAAAGGGGTTAA
* * *
34162991 ATAGTAATTATACCTAGAATAT-T-TATGGCCGGTTATT---G-AAGTATGTATGTTATATTGTA
66 ATAGTAATTATACCTAGAATATATATATGGCTGATTATTGAAGTAAGTATGTATGTTATATTATA
* * *
34163050 AAACACTAGTAATGAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAA
131 AAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAATAATGGGAA
** *
34163115 TAG-TAGTAAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAAGCGAGAAATAA
196 TAGAT-GGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACAAAACCAAG-GAGAAATAA
* * * * *
34163179 GAGAGGAACGTTTGGCTTTCAGGGTGTAA--CGCAATAATTTTTATTTTTTTGCAAATGTTAAAA
259 GAGAGGAACGTTTGGCTTTAAGGGTGTAACCCCCAA-AAATTTT-TGTTTTTGGAAATGTTAAAA
* * * **
34163242 CATGTCAAAGGTGTAACGTTTGGCTTTGAAAATATATTTTTATATGAGAAACTGCCACTTGATTT
322 CATGTCAAAGGTGTAACGTTCGGCTTTGAAAATATTTTTTTATATGAGAAACTGCCACCTGATAC
* * * * *
34163307 GACGGTTTCTCCCATTGTGTCGTCCTATTATAAAATTATTATTATTATTATTTTCATGAACTTGC
387 GACGGTTTCACCCATTGTGTCGTCTTATTATAAAA--A-TATTATTATTATTATCATGAAATTGT
* *
34163372 TACGGAGGCAATTTTAACAAAAAAAATTGATACAACGGTTTCACCCATTGTGTCATCTTGTTATA
449 TGCGGAGGAAATTTTAACAAAAAAAATTGATACAACGGTTTCACCCATTGTGTCATCTTGTTATA
* *
34163437 AAATA--TTATTTTTATCATAAAACTGCTGTAA
514 AAATATTTTATTTTTATCAT-GAACTACTGTAA
* *
34163468 ACCCATTGTC-TCATCTTGTGATTTGA-TTAAGGATTT-ATATCTAGAACTTAATTTAAAGGGGT
1 ACCCATTG-CGTCATCTTGTAATTT-ACTTAAGGATTTAAAAT-TAGAACTTAATTTAAAGGGGT
* *
34163530 TAAATAGTAATTATACC---AAGA-ATATATGGCCTG-TTATTGAAGAAAGTATGTATGTTATAT
63 TAAATAGTAATTATACCTAGAATATATATATGG-CTGATTATTGAAGTAAGTATGTATGTTATAT
* * * *
34163590 TAAAAAACATTATTAATTTAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAGTAATG
127 TATAAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAATAATG
* * *
34163655 GGAATACATCGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAAAGGAGAAA
192 GGAATAGATGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACAAAACC-AAGGAGAAA
*
34163720 TAAGAGAGGAACGTTTGGCTTTAAGGGTGTAACTCCCCCAAAATTTTTGTTTTTGGAAATGTTAA
256 TAAGAGAGGAACGTTTGGCTTTAAGGGTGTAAC-CCCCAAAAATTTTTGTTTTTGGAAATGTTAA
* * * * *
34163785 AACTTGTCAAGGGTGTAATGTTTGACTTTGAAAATATTTTTTTATATGAGAAACTGCCACCTGAT
320 AACATGTCAAAGGTGTAACGTTCGGCTTTGAAAATATTTTTTTATATGAGAAACTGCCACCTGAT
* * * * * * * *
34163850 ACGATGATGTCACCTATTCTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGATATTATT
385 ACGACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTATTATCATGAAATTGTT
** * * * ** *
34163915 TTGGA-GACAATTTTAACAAAAAAAAAACTAATACGATAGTTTCACCCGTTGTGTCATCTTGTTA
450 GCGGAGGA-AATTTTAAC--AAAAAAAATTGATACAACGGTTTCACCCATTGTGTCATCTTGTTA
* **
34163979 TAAAATATTATTATTTTTATCATGAAATTTTGTAA
512 TAAAATATT-TTATTTTTATCATGAACTACTGTAA
* * * * ** * *
34164014 ACCCATTGTGCCATCTTGTAATTTGCTTAAGGATTTATAATTAGATTTTAATTGAAAGGGGCTAA
1 ACCCATTGCGTCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAATTTAAAGGGGTTAA
*
34164079 ATAGTAATTATACCTAG-A-ATATATATGGCGGATTATTGAAGTAAGTATGTATGTTATATTATA
66 ATAGTAATTATACCTAGAATATATATATGGCTGATTATTGAAGTAAGTATGTATGTTATATTATA
** * *
34164142 AAATGTTAGTAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAA
131 AAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAATAATGGGAA
* * * * * *
34164207 TAGATGTCAAAAGCAAAAACATTTCCATCTTTTTTTTGTGTAAACCGAATAA--AAGGAGAAAGA
196 TAGATGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAA-C-AA-AACCAAGGAGAAATA
* * * * * * *
34164270 AGAGACGAACATTCGGCTTTAAGGGTGTAACACCCCAAAAGTTTTTGTTCTTGTAATTGTTAAAA
258 AGAGAGGAACGTTTGGCTTTAAGGGTGTAAC-CCCCAAAAATTTTTGTTTTTGGAAATGTTAAAA
* * * * * * * * *
34164335 CTTGTTAAGGGTGTAACATTCGGGTTTGAAAATATTTTTTTATATGAGAATCTACCACTTCATAC
322 CATGTCAAAGGTGTAACGTTCGGCTTTGAAAATATTTTTTTATATGAGAAACTGCCACCTGATAC
* * * *
34164400 GATGGTTACACCCACTGTGTCGTCTTATTATAAAAATATTATTCTT-TTATCATGAAATTGTTGC
387 GACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTATTATCATGAAATTGTTGC
* * * *
34164464 GGAGGAAATTTTAATAAAAAAAATTTGATACAACGATTTCACCCATTGTATCATCTTATTATAAA
452 GGAGGAAATTTTAACAAAAAAAA-TTGATACAACGGTTTCACCCATTGTGTCATCTTGTTATAAA
34164529 ATATTGTTATTTTTATCATGGAACTACTGTAA
516 ATATT-TTATTTTTATCAT-GAACTACTGTAA
* *
34164561 ACCCATTGCGTCATCTTATAATTTACTTAAGGATTTAAAATTAGAACTTAAGTTAAAAGGGGTTA
1 ACCCATTGCGTCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAA-TTTAAAGGGGTTA
* * ** *
34164626 AATAGTCATTCTACCTAGAATATATATATGGCTGATTGCTGAAGTAAGTATGTATGCTATATTAT
65 AATAGTAATTATACCTAGAATATATATATGGCTGATTATTGAAGTAAGTATGTATGTTATATTAT
*
34164691 AAAACATTAGTAA-TAAAATTATAATATGAAAATTTAATTAAATAGAACATAAGTAATAATGGGA
130 AAAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAATAATGGGA
* *
34164755 ATAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTGGTGCAAACAAAACCAAGTGAGAAATAA
195 ATAGATGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACAAAACCAAG-GAGAAATAA
* * * *
34164820 GAGAGGAACGTTGGGCTTTAAGGGTGTAACGCCGCAAAAATTCTTGTTTTAGGAAATGTTAAAAC
259 GAGAGGAACGTTTGGCTTTAAGGGTGTAAC-CCCCAAAAATTTTTGTTTTTGGAAATGTTAAAAC
* * * * *
34164885 ATGTCAAAGGTGTAATGTTCAGCTTTGAAAATATTTTTTTTATAAGAGAAACTGCCACCTAATTC
323 ATGTCAAAGGTGTAACGTTCGGCTTTGAAAATA-TTTTTTTATATGAGAAACTGCCACCTGATAC
* *
34164950 GACGGTTTCACCCATTGCGTCGTCTTATTATAAAAATATTATTATTATTATCATGAAATTGTTGT
387 GACGGTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTATTATCATGAAATTGTTGC
*
34165015 GGAGGAAATTTTAACAAAAAAAATTGATACGACGGTTTCACCCATTGTGTCATCTTGT
452 GGAGGAAATTTTAACAAAAAAAATTGATACAACGGTTTCACCCATTGTGTCATCTTGT
34165073 AATTTACTTA
Statistics
Matches: 1365, Mismatches: 197, Indels: 78
0.83 0.12 0.05
Matches are distributed among these distances:
539 4 0.00
540 10 0.01
541 5 0.00
542 99 0.07
543 2 0.00
544 206 0.15
545 115 0.08
546 130 0.10
547 101 0.07
548 326 0.24
549 177 0.13
550 149 0.11
551 41 0.03
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (545 bp):
ACCCATTGCGTCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAATTTAAAGGGGTTAA
ATAGTAATTATACCTAGAATATATATATGGCTGATTATTGAAGTAAGTATGTATGTTATATTATA
AAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTAATAATGGGAA
TAGATGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACAAAACCAAGGAGAAATAAGA
GAGGAACGTTTGGCTTTAAGGGTGTAACCCCCAAAAATTTTTGTTTTTGGAAATGTTAAAACATG
TCAAAGGTGTAACGTTCGGCTTTGAAAATATTTTTTTATATGAGAAACTGCCACCTGATACGACG
GTTTCACCCATTGTGTCGTCTTATTATAAAAATATTATTATTATTATCATGAAATTGTTGCGGAG
GAAATTTTAACAAAAAAAATTGATACAACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATT
TTATTTTTATCATGAACTACTGTAA
Found at i:34168887 original size:50 final size:51
Alignment explanation
Indices: 34168820--34168959 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 51
34168810 TGAAAGTGAA
*
34168820 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGG--
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGGAT
* **
34168870 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATTGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGGAT
* *
34168921 AGTGATGGTCACATGTGTAGTACAATGTGAAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
34168960 TGTGAACCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
49 6 0.08
50 38 0.48
51 31 0.39
52 4 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGGAT
Found at i:34169038 original size:46 final size:43
Alignment explanation
Indices: 34168965--34169057 Score: 107
Period size: 46 Copynumber: 2.1 Consensus size: 43
34168955 TACTATGTGA
*
34168965 ACCGATATCATTAATTATAAGGTGGTTGATATGTGCTG-ATCCC
1 ACCGATATCATTAATTAAAAGGTGGTTGATATGTGCTGAAT-CC
* * *
34169008 ACCGAATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCC
1 ACCG-ATATCATTAATTA-AAA-GGTGGTTGATATGTGCTGAATCC
34169054 ACCG
1 ACCG
34169058 TGTATCTGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.10
44 12 0.29
45 2 0.05
46 22 0.52
47 2 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGATATCATTAATTAAAAGGTGGTTGATATGTGCTGAATCC
Found at i:34172064 original size:10 final size:9
Alignment explanation
Indices: 34172044--34172073 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
34172034 CGACTGATCC
34172044 TTTTATTTT
1 TTTTATTTT
34172053 TTTTATTTT
1 TTTTATTTT
*
34172062 TTTTCTTTT
1 TTTTATTTT
34172071 TTT
1 TTT
34172074 GGGCTTCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.07, C:0.03, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTATTTT
Found at i:34172853 original size:30 final size:30
Alignment explanation
Indices: 34172779--34172917 Score: 163
Period size: 30 Copynumber: 4.6 Consensus size: 30
34172769 AAAACTTTTG
* *
34172779 GGGTCAAAGTATAATTTTAGGAAAATT-TA
1 GGGTCAAAATATAATTTTAGGAAAATTAGA
* * *
34172808 GGGTCGATATATAATTTTAGGAAAGTTAGA
1 GGGTCAAAATATAATTTTAGGAAAATTAGA
* * * *
34172838 GGGTCAAAATGTAATTTTAAGAAAGTTTGGA
1 GGGTCAAAATATAATTTTAGGAAA-ATTAGA
*
34172869 GGGTCAAAATATAATTTTAGGAAAAATAGA
1 GGGTCAAAATATAATTTTAGGAAAATTAGA
*
34172899 GGGTCAAAATGTAATTTTA
1 GGGTCAAAATATAATTTTA
34172918 AATTTTGTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
29 23 0.25
30 42 0.46
31 26 0.29
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (30 bp):
GGGTCAAAATATAATTTTAGGAAAATTAGA
Found at i:34172886 original size:61 final size:59
Alignment explanation
Indices: 34172779--34172918 Score: 190
Period size: 61 Copynumber: 2.3 Consensus size: 59
34172769 AAAACTTTTG
* * * * * **
34172779 GGGTCAAAGTATAATTTTAGGAAAATTTAGGGTCGATATATAATTTTAGGAAAGTTAGA
1 GGGTCAAAATGTAATTTTAAGAAAATTTAGGGTCAAAATATAATTTTAGGAAAAATAGA
*
34172838 GGGTCAAAATGTAATTTTAAGAAAGTTTGGAGGGTCAAAATATAATTTTAGGAAAAATAGA
1 GGGTCAAAATGTAATTTTAAGAAAATTT--AGGGTCAAAATATAATTTTAGGAAAAATAGA
34172899 GGGTCAAAATGTAATTTTAA
1 GGGTCAAAATGTAATTTTAA
34172919 ATTTTGTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 24 0.34
61 47 0.66
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGTCAAAATGTAATTTTAAGAAAATTTAGGGTCAAAATATAATTTTAGGAAAAATAGA
Found at i:34173381 original size:74 final size:75
Alignment explanation
Indices: 34173206--34173519 Score: 388
Period size: 74 Copynumber: 4.2 Consensus size: 75
34173196 ATCCAATTTT
* * * * * *
34173206 TTTTTGAAAAACAAAAATAAAAAATAGCTC-GCCGTGTGACCCGAAGCTCAACTCACCTATTGAA
1 TTTTTGAAAAACAGAAATTAAAAATACCTCAG-CGTGCGACCCGAGGCTCAACTCACCTATCGAA
*
34173270 TTATGAGTTGA
65 ATATGAGTTGA
* * * * * * * *
34173281 TCTTTGAAAAACATAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACTTCTCGGAT
1 TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTATCGAAA
34173346 TATGAG-TGA
66 TATGAGTTGA
34173355 TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCG-CCTC-AGGCTCAACTCACCTATCGAA
1 TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCGACC-CGAGGCTCAACTCACCTATCGAA
34173418 ATATGAGTTGA
65 ATATGAGTTGA
* * * **
34173429 TTTTTG-AAAACAGAAATTGAAAGTACCTCAGCGTACGACCCGAGGCTCAACTCACCTCCCGAAA
1 TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTATCGAAA
34173493 TATGAGTTGA
66 TATGAGTTGA
34173503 TTTTTGAAAAACA-AAAT
1 TTTTTGAAAAACAGAAAT
34173520 AGGAAATGGT
Statistics
Matches: 208, Mismatches: 25, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
73 55 0.26
74 89 0.43
75 63 0.30
76 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (75 bp):
TTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTATCGAAA
TATGAGTTGA
Found at i:34173475 original size:147 final size:149
Alignment explanation
Indices: 34173206--34173520 Score: 424
Period size: 147 Copynumber: 2.1 Consensus size: 149
34173196 ATCCAATTTT
* * * *
34173206 TTTTTGAAAAACAAAAATAAAAAATAGCTCGCCGTGTGACCCGAAGCTCAACTCACCTATTGAAT
1 TTTTTGAAAAAC-AAAATAAAAAATACCTCGCCGTGCGACCCGAAGCTCAACTCACCTATCGAAA
* * *
34173271 TATGAGTTGATCTTTGAAAAACATAAATTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCA
65 TATGAGTTGATCTTTGAAAAACAGAAATTGAAAATACCTCAGCGTACGACCCGAGGCTCAACTCA
* * * *
34173336 CTTCTCGGATTATGAG-TGA
130 CCTCCCGAAATATGAGTTGA
* *
34173355 TTTTTGAAAAACAGAAATTAAAAATACCTCAG-CGTGCG-CCTC-AGGCTCAACTCACCTATCGA
1 TTTTTGAAAAACA-AAATAAAAAATACCTC-GCCGTGCGACC-CGAAGCTCAACTCACCTATCGA
* *
34173417 AATATGAGTTGATTTTTG-AAAACAGAAATTGAAAGTACCTCAGCGTACGACCCGAGGCTCAACT
63 AATATGAGTTGATCTTTGAAAAACAGAAATTGAAAATACCTCAGCGTACGACCCGAGGCTCAACT
34173481 CACCTCCCGAAATATGAGTTGA
128 CACCTCCCGAAATATGAGTTGA
34173503 TTTTTGAAAAACAAAATA
1 TTTTTGAAAAACAAAATA
34173521 GGAAATGGTT
Statistics
Matches: 146, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
147 60 0.41
148 53 0.36
149 32 0.22
150 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (149 bp):
TTTTTGAAAAACAAAATAAAAAATACCTCGCCGTGCGACCCGAAGCTCAACTCACCTATCGAAAT
ATGAGTTGATCTTTGAAAAACAGAAATTGAAAATACCTCAGCGTACGACCCGAGGCTCAACTCAC
CTCCCGAAATATGAGTTGA
Found at i:34173843 original size:20 final size:21
Alignment explanation
Indices: 34173792--34173843 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
34173782 GCATTCATTG
*
34173792 TCTC-AGTCCTTG-ACTTTTC
1 TCTCAAGTTCTTGTACTTTTC
*
34173811 TCTCAGGTT-TTGTACTTTTC
1 TCTCAAGTTCTTGTACTTTTC
34173831 -CTCAAGTTCTTGT
1 TCTCAAGTTCTTGT
34173844 GATTAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.12, C:0.25, G:0.13, T:0.50
Consensus pattern (21 bp):
TCTCAAGTTCTTGTACTTTTC
Found at i:34195286 original size:12 final size:12
Alignment explanation
Indices: 34195266--34195302 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
34195256 TTTTTCCATC
*
34195266 TATCATCTTTAT
1 TATCTTCTTTAT
34195278 TATCTTCTTTAT
1 TATCTTCTTTAT
*
34195290 TTTCTTCTTTAT
1 TATCTTCTTTAT
34195302 T
1 T
34195303 GTTCTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (12 bp):
TATCTTCTTTAT
Found at i:34200872 original size:20 final size:20
Alignment explanation
Indices: 34200847--34200890 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
34200837 CCATGCCATT
*
34200847 ATATAATTTGTGATAGTGTG
1 ATATAATTTGTGATACTGTG
34200867 ATATAATTTGTGATACTGTG
1 ATATAATTTGTGATACTGTG
34200887 ATAT
1 ATAT
34200891 CTCCTGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (20 bp):
ATATAATTTGTGATACTGTG
Found at i:34205843 original size:29 final size:29
Alignment explanation
Indices: 34205768--34205850 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 29
34205758 TGAATAAACA
*
34205768 AGAATAAATAAAGAAATAA-ATAA-AATT
1 AGAATAAATAAAGAAATAATAAAATAATT
*
34205795 AGTAA-AACTAATA-AAA-AATAAAATAATT
1 AG-AATAAATAA-AGAAATAATAAAATAATT
*
34205823 AGAATAAATAAAGAAATAATAATATAAT
1 AGAATAAATAAAGAAATAATAAAATAAT
34205851 AATATAATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
26 2 0.04
27 16 0.36
28 17 0.38
29 10 0.22
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (29 bp):
AGAATAAATAAAGAAATAATAAAATAATT
Found at i:34205849 original size:8 final size:8
Alignment explanation
Indices: 34205838--34205862 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
34205828 AAATAAAGAA
34205838 ATAATAAT
1 ATAATAAT
34205846 ATAATAAT
1 ATAATAAT
34205854 ATAATAAT
1 ATAATAAT
34205862 A
1 A
34205863 AGAAGAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Done.