Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 12 of 199
Found at i:3924542 original size:37 final size:37
Alignment explanation
Indices: 3924488--3924600 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
3924478 TTATGTTTTA
*
3924488 ATTC-AAGACTTGTGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
3924524 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
* *
3924561 ATTCAAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
3924598 ATT
1 ATT
3924601 TAATTCGGGT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 4 0.05
37 69 0.95
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (37 bp):
ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
Found at i:3924556 original size:17 final size:17
Alignment explanation
Indices: 3924500--3924594 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
3924490 TCAAGACTTG
3924500 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
3924517 TGTAGTGATTCAAAGACTTA
1 TGTAAT-ATTTTTA-A-TTA
3924537 TGTAATATTTTTAATTA
1 TGTAATATTTTTAATTA
* ***
3924554 TGTAGTGATTCAAAGATTTA
1 TGTAAT-ATTTTTA-A-TTA
*
3924574 TGTAATGTTTTTAATTA
1 TGTAATATTTTTAATTA
3924591 TGTA
1 TGTA
3924595 GTGATTTAAT
Statistics
Matches: 55, Mismatches: 17, Indels: 12
0.65 0.20 0.14
Matches are distributed among these distances:
17 20 0.36
18 10 0.18
19 9 0.16
20 16 0.29
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (17 bp):
TGTAATATTTTTAATTA
Found at i:3924615 original size:9 final size:9
Alignment explanation
Indices: 3924601--3924708 Score: 153
Period size: 9 Copynumber: 11.6 Consensus size: 9
3924591 TGTAGTGATT
3924601 TAATTCGGG
1 TAATTCGGG
3924610 TAATTCGGG
1 TAATTCGGG
3924619 TAATTTTCGGG
1 TAA--TTCGGG
*
3924630 TAATTTGGG
1 TAATTCGGG
3924639 TAATTTTCGGG
1 TAA--TTCGGG
3924650 TAATTCGGG
1 TAATTCGGG
3924659 TAATTCGGG
1 TAATTCGGG
*
3924668 TAAGTCGGG
1 TAATTCGGG
3924677 TAATTCGGG
1 TAATTCGGG
*
3924686 TAAGTCGGG
1 TAATTCGGG
3924695 TAATTCGGG
1 TAATTCGGG
3924704 TAATT
1 TAATT
3924709 TTTAACCAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
9 72 0.81
11 17 0.19
ACGTcount: A:0.22, C:0.09, G:0.32, T:0.36
Consensus pattern (9 bp):
TAATTCGGG
Found at i:3924846 original size:28 final size:27
Alignment explanation
Indices: 3924814--3924879 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
3924804 AAAATTCGGT
3924814 TCGGTTAACGGTTA-AAAAATTTGAGAGG
1 TCGGTTAACGGTTACAAAAATTT-AG-GG
* *
3924842 TCGGTTAATTCGGTTACAAGAATTTCGGG
1 TCGGTTAA--CGGTTACAAAAATTTAGGG
3924871 TCGGTTAAC
1 TCGGTTAAC
3924880 CGACTGAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
27 1 0.03
28 8 0.24
29 10 0.30
30 7 0.21
31 7 0.21
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (27 bp):
TCGGTTAACGGTTACAAAAATTTAGGG
Found at i:3925215 original size:48 final size:49
Alignment explanation
Indices: 3925098--3925216 Score: 204
Period size: 49 Copynumber: 2.4 Consensus size: 49
3925088 TTATTTATTT
* **
3925098 AATTAGATTAATTGCAACATTAAAACTTGGAATAAACTTTGTGGTCATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATCATA
3925147 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAAT-ATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATCATA
3925195 AATTAGATTAATTGCAACATTA
1 AATTAGATTAATTGCAACATTA
3925217 CAATATTACA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
48 25 0.37
49 42 0.63
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (49 bp):
AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATCATA
Found at i:3925234 original size:64 final size:63
Alignment explanation
Indices: 3925144--3925326 Score: 205
Period size: 64 Copynumber: 2.9 Consensus size: 63
3925134 CTTTGTGGTC
* *
3925144 ATAAATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAGAT-TAAT
1 ATAAATTA-AATAATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAGATGTAAT
* *
3925207 -TGCAACATTACAAT-ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAGTT--TTGTA
1 AT--AA-ATTA-AATAATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAGATGTA
3925268 AT
62 AT
* * **
3925270 ATAAATTAAATACATTACAATATTAAAAATCAGAACAAACTTTGTAATATAAATTAG
1 ATAAATTAAATA-ATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAG
3925327 GTACATTGGA
Statistics
Matches: 101, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
60 3 0.03
61 4 0.04
62 41 0.41
63 4 0.04
64 43 0.43
65 6 0.06
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (63 bp):
ATAAATTAAATAATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTAGATGTAAT
Found at i:3933312 original size:29 final size:30
Alignment explanation
Indices: 3933253--3933310 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
3933243 TCCGAGCCTT
*
3933253 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
3933283 GGGGTAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
3933311 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:3933540 original size:13 final size:13
Alignment explanation
Indices: 3933522--3933553 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
3933512 TTTCCAGCAA
3933522 TTATGAATTTATT
1 TTATGAATTTATT
3933535 TTATGAATTTATT
1 TTATGAATTTATT
*
3933548 TGATGA
1 TTATGA
3933554 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:3933761 original size:50 final size:50
Alignment explanation
Indices: 3933648--3933889 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
3933638 ATTTGGGTAA
* * *
3933648 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
3933704 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3933754 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
3933804 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
3933854 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
3933890 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:3933837 original size:100 final size:103
Alignment explanation
Indices: 3933648--3933897 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
3933638 ATTTGGGTAA
3933648 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
3933713 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
3933754 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
3933816 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
3933854 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
3933898 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:3935738 original size:18 final size:18
Alignment explanation
Indices: 3935703--3935737 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
3935693 GGAAAAACCA
*
3935703 ATTTATCTTTTTATTTTT
1 ATTTATCTTTTGATTTTT
3935721 ATTTAT-TTTTGATTTTT
1 ATTTATCTTTTGATTTTT
3935738 TTAAGAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (18 bp):
ATTTATCTTTTGATTTTT
Found at i:3936998 original size:21 final size:20
Alignment explanation
Indices: 3936965--3937012 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
3936955 CAAAATAAAG
3936965 AGGGCCACCCTC-TCTTGCCA
1 AGGGCCACCCTCTTC-TGCCA
*
3936985 AGGGACCACTCTCTTCTGCCA
1 AGGG-CCACCCTCTTCTGCCA
*
3937006 AAGGCCA
1 AGGGCCA
3937013 TTTTCACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 15 0.62
22 2 0.08
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.19
Consensus pattern (20 bp):
AGGGCCACCCTCTTCTGCCA
Found at i:3937032 original size:21 final size:21
Alignment explanation
Indices: 3937008--3937047 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
3936998 TTCTGCCAAA
*
3937008 GGCCATTTTCACCCACCAATG
1 GGCCATTCTCACCCACCAATG
* *
3937029 GGCCGTTCTCACTCACCAA
1 GGCCATTCTCACCCACCAA
3937048 AGGGGTGTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.40, G:0.15, T:0.23
Consensus pattern (21 bp):
GGCCATTCTCACCCACCAATG
Found at i:3937401 original size:42 final size:42
Alignment explanation
Indices: 3937348--3937439 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
3937338 GAAGACACAT
* **
3937348 GCCCATGTGGCCGGGTATGTGACTCACACGGCCAGGAGACAC
1 GCCCGTGTGGCCGGCCATGTGACTCACACGGCCAGGAGACAC
* * * * *
3937390 GCCCGTGTGGCCTGCCGTGTGGCTCACACGGCTAGGAGACAT
1 GCCCGTGTGGCCGGCCATGTGACTCACACGGCCAGGAGACAC
*
3937432 ACCCGTGT
1 GCCCGTGT
3937440 CTTAGGCCGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (42 bp):
GCCCGTGTGGCCGGCCATGTGACTCACACGGCCAGGAGACAC
Found at i:3938421 original size:33 final size:32
Alignment explanation
Indices: 3938384--3938460 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 32
3938374 TGGCCCTGCC
** * *
3938384 ATGGTCTTACATTTGTAGTGCCATAGCCCAGTT
1 ATGGTCTTACATCAG-AATGCCATAGCCCAGCT
3938417 ATGGTCTTATCATCAGAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATCAGAATGCCATAGCCCAGCT
3938450 ATGGTCTTACA
1 ATGGTCTTACA
3938461 CATGTATCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 2 0.05
33 33 0.85
34 4 0.10
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (32 bp):
ATGGTCTTACATCAGAATGCCATAGCCCAGCT
Found at i:3938545 original size:105 final size:105
Alignment explanation
Indices: 3938405--3938670 Score: 383
Period size: 105 Copynumber: 2.5 Consensus size: 105
3938395 TTTGTAGTGC
* * * * *
3938405 CATAGCCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACACATGTATCT
1 CATAACCCAGTTATGGTCTTTTTATTAAAATGCCATAGCCCAGCTATGGTCTTACACATGTATCT
** * * *
3938470 ATACTGTTATGGTCCAACCAT-AGTCTTACGTTCAATG-TGT
66 ATACTGCCATGGTCCAACCATGA-TATTAAGTTCAA-GATAT
* *
3938510 CATAACCCAGTTATGATCTTTTTATTAAAATGCCATAGCTCAGCTATGGTCTTACACATGTATCT
1 CATAACCCAGTTATGGTCTTTTTATTAAAATGCCATAGCCCAGCTATGGTCTTACACATGTATCT
*
3938575 ATACTGCCATGGTCTAACCATGATATTAAGTTCAAGATAT
66 ATACTGCCATGGTCCAACCATGATATTAAGTTCAAGATAT
3938615 CATAACCCAGTTATGGTCTTTTTATTAAAATGCCATAGCCCAGCTATGGTCTTACA
1 CATAACCCAGTTATGGTCTTTTTATTAAAATGCCATAGCCCAGCTATGGTCTTACA
3938671 TTTAAACATT
Statistics
Matches: 144, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
104 1 0.01
105 142 0.99
106 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (105 bp):
CATAACCCAGTTATGGTCTTTTTATTAAAATGCCATAGCCCAGCTATGGTCTTACACATGTATCT
ATACTGCCATGGTCCAACCATGATATTAAGTTCAAGATAT
Found at i:3945579 original size:15 final size:16
Alignment explanation
Indices: 3945547--3945579 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3945537 GACTTGCTTG
3945547 AACTTGAAATCGAAAT
1 AACTTGAAATCGAAAT
*
3945563 AACTTGAATTC-AAAT
1 AACTTGAAATCGAAAT
3945578 AA
1 AA
3945580 GATTGAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (16 bp):
AACTTGAAATCGAAAT
Found at i:3945641 original size:15 final size:15
Alignment explanation
Indices: 3945616--3945660 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
3945606 GAAAATATTT
3945616 AAACTCAAAAAAATCC
1 AAACTC-AAAAAATCC
* *
3945632 TAACTCAAAAAACCC
1 AAACTCAAAAAATCC
*
3945647 AAATTCAAAAAATC
1 AAACTCAAAAAATC
3945661 TTAAACTTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACTCAAAAAATCC
Found at i:3946015 original size:19 final size:19
Alignment explanation
Indices: 3945991--3946059 Score: 58
Period size: 18 Copynumber: 3.8 Consensus size: 19
3945981 AAAAAGGAAC
3945991 TAAATAAAATATATTATAT
1 TAAATAAAATATATTATAT
* *
3946010 TAAAT--AATATA-AATTT
1 TAAATAAAATATATTATAT
*
3946026 TAAATAAAAT-TAATTATAA
1 TAAATAAAATAT-ATTATAT
*
3946045 T-AATTAAATATATTA
1 TAAATAAAATATATTA
3946060 CACATGACTG
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
16 8 0.21
17 7 0.18
18 15 0.38
19 9 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATAAAATATATTATAT
Found at i:3948677 original size:22 final size:21
Alignment explanation
Indices: 3948619--3948688 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
3948609 AAATAATAGT
* * *
3948619 AAAATAGCGAGAAAACAATAAG
1 AAAATAG-TAGAAAACAGTAAA
*
3948641 AAAATAATAGCAAAACAGTAAA
1 AAAATAGTAG-AAAACAGTAAA
* *
3948663 AAAATAGTAAGAAAATAGCAAA
1 AAAATAGT-AGAAAACAGTAAA
3948685 AAAA
1 AAAA
3948689 AATAGCAGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 2 0.05
22 35 0.90
23 2 0.05
ACGTcount: A:0.69, C:0.07, G:0.13, T:0.11
Consensus pattern (21 bp):
AAAATAGTAGAAAACAGTAAA
Found at i:3949616 original size:22 final size:23
Alignment explanation
Indices: 3949591--3949636 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
3949581 ATATTTGTTC
* *
3949591 AAATGTATTATAATT-TAAATTT
1 AAATATATTACAATTATAAATTT
*
3949613 AAATATATTACAATTATCAATTT
1 AAATATATTACAATTATAAATTT
3949636 A
1 A
3949637 TTTATCATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (23 bp):
AAATATATTACAATTATAAATTT
Found at i:3967622 original size:31 final size:31
Alignment explanation
Indices: 3967587--3967649 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
3967577 CCTTTTAGAC
3967587 TAAATAAAATAAATGAAACCCCGATTTTGTT
1 TAAATAAAATAAATGAAACCCCGATTTTGTT
3967618 TAAATAAAATAAATGAAACCCCGATTTTGTT
1 TAAATAAAATAAATGAAACCCCGATTTTGTT
3967649 T
1 T
3967650 TGGTGTTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (31 bp):
TAAATAAAATAAATGAAACCCCGATTTTGTT
Found at i:3969616 original size:21 final size:19
Alignment explanation
Indices: 3969573--3969618 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
3969563 AAATAAAAAT
*
3969573 AAAAATATAAAAAATTTAG
1 AAAAATATAAAAAATCTAG
* *
3969592 AAATATATATAAAATCTAG
1 AAAAATATAAAAAATCTAG
3969611 AAAAATAT
1 AAAAATAT
3969619 TTTTTTTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (19 bp):
AAAAATATAAAAAATCTAG
Found at i:3969860 original size:15 final size:14
Alignment explanation
Indices: 3969824--3969893 Score: 58
Period size: 15 Copynumber: 5.0 Consensus size: 14
3969814 AGTAATGTTT
3969824 TTTATATTTAAATA
1 TTTATATTTAAATA
3969838 TTTAATATTATAAAT-
1 TTT-ATATT-TAAATA
*
3969853 TCTTATATTTTAAT-
1 T-TTATATTTAAATA
3969867 TTTA-ATTT-AATA
1 TTTATATTTAAATA
*
3969879 TTTTTATTTTAAATA
1 TTTATA-TTTAAATA
3969894 AATTTCTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
11 3 0.06
12 7 0.15
13 4 0.09
14 11 0.23
15 15 0.32
16 7 0.15
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTATATTTAAATA
Found at i:3977037 original size:24 final size:24
Alignment explanation
Indices: 3977009--3977056 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
3976999 AAAGTTACTC
3977009 TTTATACTTTTATTAAACTAATAA
1 TTTATACTTTTATTAAACTAATAA
*
3977033 TTTATACTTTTATTAAATTAATAA
1 TTTATACTTTTATTAAACTAATAA
3977057 GCTAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTATACTTTTATTAAACTAATAA
Found at i:3977305 original size:21 final size:20
Alignment explanation
Indices: 3977266--3977305 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
3977256 ATTTTATTTT
*
3977266 TTTATTTTTAACTATTTAAA
1 TTTATTTTTAACTAATTAAA
*
3977286 TTTATATTTTAATTAATTAA
1 TTTAT-TTTTAACTAATTAA
3977306 TTAATTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTATTTTTAACTAATTAAA
Found at i:3979840 original size:14 final size:15
Alignment explanation
Indices: 3979802--3979841 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
3979792 ACAATTTTAT
3979802 AACTTAAA--TTCAG
1 AACTTAAATTTTCAG
3979815 AACTTAAATTTTCAG
1 AACTTAAATTTTCAG
3979830 AACTT-AATTTTC
1 AACTTAAATTTTC
3979842 TGCATGGGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.32
14 7 0.28
15 10 0.40
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (15 bp):
AACTTAAATTTTCAG
Found at i:3979962 original size:16 final size:16
Alignment explanation
Indices: 3979941--3979992 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
3979931 GAGCTTTGTT
*
3979941 TAATGGATTAGAGGTG
1 TAATGGAATAGAGGTG
3979957 TAATGGAATAGAGGTG
1 TAATGGAATAGAGGTG
3979973 TAATGGAATAGAGGTG
1 TAATGGAATAGAGGTG
3979989 TAAT
1 TAAT
3979993 ATCAAATCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.37, C:0.00, G:0.35, T:0.29
Consensus pattern (16 bp):
TAATGGAATAGAGGTG
Found at i:3980096 original size:19 final size:19
Alignment explanation
Indices: 3980072--3980110 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
3980062 GAATAGAGGT
3980072 ATAATAGCATAATGGAAAA
1 ATAATAGCATAATGGAAAA
3980091 ATAATAGCATAATGGAAAA
1 ATAATAGCATAATGGAAAA
3980110 A
1 A
3980111 ACTAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.15, T:0.21
Consensus pattern (19 bp):
ATAATAGCATAATGGAAAA
Found at i:3980272 original size:14 final size:15
Alignment explanation
Indices: 3980233--3980274 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
3980223 TTTTAACATA
*
3980233 ATTATTATTAAATAT
1 ATTATAATTAAATAT
3980248 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
3980262 A-TATAATTTAATA
1 ATTATAATTAAATA
3980275 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:3984220 original size:20 final size:21
Alignment explanation
Indices: 3984195--3984245 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
3984185 TAGGAAAATT
*
3984195 TTATAAAAATATATT-ATATA
1 TTATAAAAATATATTAATAGA
*
3984215 TTATAAAAATTTATTAATAGA
1 TTATAAAAATATATTAATAGA
3984236 TTATAAAAAT
1 TTATAAAAAT
3984246 GTGGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
TTATAAAAATATATTAATAGA
Found at i:3984450 original size:21 final size:21
Alignment explanation
Indices: 3984424--3984464 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3984414 TGGTGTGATA
*
3984424 GTTGACATGGCATTTCACATT
1 GTTGACATGACATTTCACATT
*
3984445 GTTGACATGACATTTGACAT
1 GTTGACATGACATTTCACAT
3984465 CAAAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (21 bp):
GTTGACATGACATTTCACATT
Found at i:3984643 original size:20 final size:21
Alignment explanation
Indices: 3984618--3984668 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
3984608 TAGGAAAATT
*
3984618 TTATAAAAATATATT-ATATA
1 TTATAAAAATATATTAATAGA
*
3984638 TTATAAAAATTTATTAATAGA
1 TTATAAAAATATATTAATAGA
3984659 TTATAAAAAT
1 TTATAAAAAT
3984669 GTGGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
TTATAAAAATATATTAATAGA
Found at i:3984780 original size:27 final size:26
Alignment explanation
Indices: 3984750--3984809 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
3984740 GTAAATTATG
3984750 AAAAATATGAAATAATTA-TAAAAATCT
1 AAAAATAT-AAAT-ATTATTAAAAATCT
* *
3984777 AAAATAAATAAATATTATTAAAAATTT
1 AAAA-ATATAAATATTATTAAAAATCT
3984804 AAAAAT
1 AAAAAT
3984810 TGATGCGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 5 0.18
27 20 0.71
28 3 0.11
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (26 bp):
AAAAATATAAATATTATTAAAAATCT
Found at i:3984781 original size:19 final size:20
Alignment explanation
Indices: 3984743--3984783 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
3984733 ATTATTAGTA
*
3984743 AATTATGAAAAATATGAAAT
1 AATTATGAAAAATATAAAAT
*
3984763 AATTAT-AAAAATCTAAAAT
1 AATTATGAAAAATATAAAAT
3984782 AA
1 AA
3984784 ATAAATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (20 bp):
AATTATGAAAAATATAAAAT
Found at i:3985805 original size:10 final size:10
Alignment explanation
Indices: 3985755--3985802 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
3985745 TAAATTCCTA
3985755 AAAGATAAAT
1 AAAGATAAAT
* ** *
3985765 ACATTTAATT
1 AAAGATAAAT
3985775 AAAGATAAAT
1 AAAGATAAAT
3985785 AAAGATAAAT
1 AAAGATAAAT
3985795 AAA-ATAAA
1 AAAGATAAA
3985803 ATACTAAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:3991861 original size:45 final size:44
Alignment explanation
Indices: 3991777--3991867 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
3991767 TATAAAGTAT
* ** * *
3991777 TATCTAAATATTAATTTAGTAAAAATAAAGTTTAATAATTGTAA
1 TATCTAAATATTAATTAAGTAAAAATAAACATAAATAATTATAA
3991821 TATCTAAATATTAATTAAGTAAAAAATAAACATAAATAATTATAA
1 TATCTAAATATTAATTAAGT-AAAAATAAACATAAATAATTATAA
3991866 TA
1 TA
3991868 CTTAAAACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 19 0.46
45 22 0.54
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.37
Consensus pattern (44 bp):
TATCTAAATATTAATTAAGTAAAAATAAACATAAATAATTATAA
Found at i:3994920 original size:16 final size:16
Alignment explanation
Indices: 3994883--3994921 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
3994873 TTTACTTTAT
3994883 GTAATTAATACAAAATA
1 GTAATT-ATACAAAATA
*
3994900 G-AATTATTCAAAATA
1 GTAATTATACAAAATA
3994915 GTAATTA
1 GTAATTA
3994922 AGAAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 10 0.50
16 9 0.45
17 1 0.05
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (16 bp):
GTAATTATACAAAATA
Found at i:4004160 original size:21 final size:21
Alignment explanation
Indices: 4004136--4004175 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
4004126 TAAAACGATG
4004136 TGGTTTT-ACTTTTTAACTTAA
1 TGGTTTTAAC-TTTTAACTTAA
4004157 TGGTTTTAACTTTTAACTT
1 TGGTTTTAACTTTTAACTT
4004176 TAGAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (21 bp):
TGGTTTTAACTTTTAACTTAA
Found at i:4010188 original size:39 final size:39
Alignment explanation
Indices: 4010134--4010219 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
4010124 CAAAGAGAAT
* * *
4010134 CATTGCTCGGTTATAAAGGTGTCAACAATAGACTTTAAC
1 CATTGCTCGATTATAAAGATGTCAACAAGAGACTTTAAC
*
4010173 CATTGCTCGATTATAAAGATGTCCACAAGAGACTTTAAC
1 CATTGCTCGATTATAAAGATGTCAACAAGAGACTTTAAC
*
4010212 TATTGCTC
1 CATTGCTC
4010220 CCTAATACTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (39 bp):
CATTGCTCGATTATAAAGATGTCAACAAGAGACTTTAAC
Found at i:4016394 original size:5 final size:5
Alignment explanation
Indices: 4016384--4016434 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
4016374 GTTATAAATT
* * * *
4016384 ATATA ATATA ATAT- ATATAA AAATA ACATA ATATA ATATA AAATA TTATA
1 ATATA ATATA ATATA ATAT-A ATATA ATATA ATATA ATATA ATATA ATATA
4016434 A
1 A
4016435 ATTTAAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
4 4 0.11
5 30 0.81
6 3 0.08
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:4016414 original size:20 final size:21
Alignment explanation
Indices: 4016386--4016426 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
4016376 TATAAATTAT
*
4016386 ATAATATAATAT-ATATAAAA
1 ATAACATAATATAATATAAAA
4016406 ATAACATAATATAATATAAAA
1 ATAACATAATATAATATAAAA
4016427 TATTATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAACATAATATAATATAAAA
Found at i:4016434 original size:25 final size:23
Alignment explanation
Indices: 4016376--4016434 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 23
4016366 TTTTATGTGT
* *
4016376 TATAAATTATATAATATAATATA
1 TATAAAATATATAACATAATATA
4016399 TAT-AAA-A-ATAACATAATATAA
1 TATAAAATATATAACATAATAT-A
4016420 TATAAAATATTATAA
1 TATAAAATA-TATAA
4016435 ATTTAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
20 11 0.38
21 5 0.17
22 5 0.17
23 4 0.14
25 4 0.14
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
TATAAAATATATAACATAATATA
Found at i:4020907 original size:16 final size:17
Alignment explanation
Indices: 4020886--4020931 Score: 67
Period size: 16 Copynumber: 2.7 Consensus size: 17
4020876 TAATAGTTTT
4020886 AATTAAAAATTTTA-AA
1 AATTAAAAATTTTATAA
4020902 AATTAAAAATTTTATAA
1 AATTAAAAATTTTATAA
*
4020919 AATAAACAAATTT
1 AATTAA-AAATTT
4020932 GTTTTCTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 14 0.52
17 7 0.26
18 6 0.22
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AATTAAAAATTTTATAA
Found at i:4021383 original size:23 final size:23
Alignment explanation
Indices: 4021340--4021385 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4021330 TTATTGATTC
* *
4021340 CTATTTTTTTCATTTTCTATTTT
1 CTATTTTTTCCAATTTCTATTTT
4021363 CTATTTTTATCCAATTT-TATTTT
1 CTATTTTT-TCCAATTTCTATTTT
4021386 TAATTATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (23 bp):
CTATTTTTTCCAATTTCTATTTT
Found at i:4029132 original size:24 final size:24
Alignment explanation
Indices: 4029097--4029142 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
4029087 CTCAATGCCA
*
4029097 CAAAAAAGAAGAAGCAA-AACTACC
1 CAAAAAAAAAGAAG-AAGAACTACC
4029121 CAAAAAAAAAGAAGAAGAACTA
1 CAAAAAAAAAGAAGAAGAACTA
4029143 AATTACACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.67, C:0.15, G:0.13, T:0.04
Consensus pattern (24 bp):
CAAAAAAAAAGAAGAAGAACTACC
Found at i:4035003 original size:44 final size:44
Alignment explanation
Indices: 4034955--4035104 Score: 228
Period size: 44 Copynumber: 3.4 Consensus size: 44
4034945 TATCACTTGC
* * * *
4034955 CACTTGTCATTGATCAGATAAGTGTAGCTAAAGTTACCACTTGT
1 CACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
* *
4034999 CACTTGTCACTGATCAGATAAGTGTAGTTGAAGCTATCACTTAT
1 CACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
* *
4035043 AACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTTAT
1 CACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
4035087 CACTTGTCACTGATCAGA
1 CACTTGTCACTGATCAGA
4035105 AGTACTCAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTAT
Found at i:4037767 original size:25 final size:25
Alignment explanation
Indices: 4037720--4037768 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
4037710 TGTATATATT
*
4037720 ATATAAAAATAATTATATTTATTTA
1 ATATAAAAATAATTATATGTATTTA
4037745 ATATAAAAATAAATTA-ATGTATTT
1 ATATAAAAAT-AATTATATGTATTT
4037769 CTTTCTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
ATATAAAAATAATTATATGTATTTA
Found at i:4037976 original size:29 final size:30
Alignment explanation
Indices: 4037942--4038013 Score: 101
Period size: 33 Copynumber: 2.3 Consensus size: 30
4037932 AATAAATATT
4037942 AATTC-TTATTTATTATATATGTCACGTCA
1 AATTCTTTATTTATTATATATGTCACGTCA
4037971 AATTCTTATTTATTTATTATATATGTCACGTCA
1 AATTC---TTTATTTATTATATATGTCACGTCA
*
4038004 AATTTTTTAT
1 AATTCTTTAT
4038014 GGATAAAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
29 5 0.13
30 5 0.13
33 28 0.74
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.53
Consensus pattern (30 bp):
AATTCTTTATTTATTATATATGTCACGTCA
Found at i:4041459 original size:41 final size:39
Alignment explanation
Indices: 4041396--4041599 Score: 196
Period size: 41 Copynumber: 5.0 Consensus size: 39
4041386 GTGATTGAAT
* * *
4041396 ATAATACAGACGTTACGTCTAGCAGGCTTAATGCCGGTG
1 ATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
*
4041435 AAGTAATTCAGACTTTAAGTCTAGCAGGCTAAATGCCGGTG
1 -A-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
4041476 ATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTG
1 ATA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
4041517 ATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 ATA-A-TTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
* * **
4041558 TACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTG
1 -A-T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
4041599 A
1 A
4041600 ATCTGTTTAA
Statistics
Matches: 144, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 7 0.05
41 129 0.90
42 3 0.02
43 2 0.01
44 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (39 bp):
ATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
Found at i:4041582 original size:82 final size:81
Alignment explanation
Indices: 4041414--4041599 Score: 216
Period size: 82 Copynumber: 2.3 Consensus size: 81
4041404 GACGTTACGT
*
4041414 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATA
1 CTAGCAGGCTTAATGCCGGTG-AGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGATA
* * *
4041479 CATTTCAGACTATATGT
65 CATATCAGACTATAAGC
* *
4041496 CTAGCAGGCTTAATGCCGGTGA-TACATTTCAGACTATATGTCTAGCAGGCTAAGTGCCGGTG-T
1 CTAGCAGGCTTAATGCCGGTGAGTA-A-TTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGAT
* *
4041559 AC-TGAATCAGGCTTTAAGC
64 ACAT--ATCAGACTATAAGC
**
4041578 CTAGCAGGCAAAATGCCGGTGA
1 CTAGCAGGCTTAATGCCGGTGA
4041600 ATCTGTTTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
80 3 0.03
81 5 0.06
82 82 0.91
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (81 bp):
CTAGCAGGCTTAATGCCGGTGAGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGATAC
ATATCAGACTATAAGC
Found at i:4048699 original size:17 final size:17
Alignment explanation
Indices: 4048660--4048707 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
4048650 ATATTATAAA
* *
4048660 ATATTTTCAATTAT-AT
1 ATATTTTAAATTTTAAT
*
4048676 ATTTTTTAAATTTTAAT
1 ATATTTTAAATTTTAAT
*
4048693 ATATTTTATATTTTA
1 ATATTTTAAATTTTA
4048708 TTTCAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATTTTAAATTTTAAT
Found at i:4049323 original size:10 final size:10
Alignment explanation
Indices: 4049308--4049339 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
4049298 CGCCATTTTC
*
4049308 AGAAAAGAAA
1 AGAAAATAAA
4049318 AGAAAATAAA
1 AGAAAATAAA
4049328 AGAAAATAAA
1 AGAAAATAAA
4049338 AG
1 AG
4049340 CCACAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (10 bp):
AGAAAATAAA
Found at i:4052063 original size:20 final size:20
Alignment explanation
Indices: 4052024--4052063 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
4052014 CCGTAAAATA
**
4052024 ATTTCTGGAAAATGTTTTAC
1 ATTTCTGGAAAATGACTTAC
*
4052044 ATTTCTGTAAAATGACTTAC
1 ATTTCTGGAAAATGACTTAC
4052064 TGGAAAATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
ATTTCTGGAAAATGACTTAC
Found at i:4052069 original size:35 final size:34
Alignment explanation
Indices: 4052011--4052076 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
4052001 AGTAAAATGT
*
4052011 TTTCCGTAAAATAATTTCTGGAAAATGTTTTACA
1 TTTCCGTAAAATAATTACTGGAAAATGTTTTACA
* *
4052045 TTTCTGTAAAATGACTTACTGGAAAATGTTTT
1 TTTCCGTAAAAT-AATTACTGGAAAATGTTTT
4052077 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 11 0.39
35 17 0.61
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (34 bp):
TTTCCGTAAAATAATTACTGGAAAATGTTTTACA
Found at i:4053238 original size:18 final size:18
Alignment explanation
Indices: 4053215--4053261 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
4053205 GCTTCGAAAC
4053215 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGGAAGGAGAAG
*
4053233 GGGAAAGGGGAGGAGAAG
1 GGGAAAGGGAAGGAGAAG
4053251 GGGAAATGGGA
1 GGGAAA-GGGA
4053262 GAAGAATGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 23 0.88
19 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.57, T:0.02
Consensus pattern (18 bp):
GGGAAAGGGAAGGAGAAG
Found at i:4053262 original size:18 final size:17
Alignment explanation
Indices: 4053215--4053267 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 17
4053205 GCTTCGAAAC
4053215 GGGAAAGGGAAGGAGAAG
1 GGGAAAGGG-AGGAGAAG
4053233 GGGAAAGGGGAGGAGAAG
1 GGGAAA-GGGAGGAGAAG
*
4053251 GGGAAATGGGAGAAGAA
1 GGGAAA-GGGAGGAGAA
4053268 TGGGTCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 29 0.91
19 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.55, T:0.02
Consensus pattern (17 bp):
GGGAAAGGGAGGAGAAG
Found at i:4063043 original size:21 final size:22
Alignment explanation
Indices: 4063017--4063065 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
4063007 TTATCACTTC
4063017 TTTCTCTTTCTT-CAA-TTTTGA
1 TTTCTC-TTCTTCCAATTTTTGA
*
4063038 TTTCTCTTCTTCCAATTTTTTA
1 TTTCTCTTCTTCCAATTTTTGA
4063060 TTTCTC
1 TTTCTC
4063066 CTTAATTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 5 0.20
21 9 0.36
22 11 0.44
ACGTcount: A:0.12, C:0.22, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTCTCTTCTTCCAATTTTTGA
Found at i:4066429 original size:40 final size:39
Alignment explanation
Indices: 4066345--4066479 Score: 134
Period size: 40 Copynumber: 3.4 Consensus size: 39
4066335 CGTTTGAATA
* * * *
4066345 AAAAACACCGCTAAAAATC-AATCATTAGCGGCGCTATATA
1 AAAAACGCCGCTAAAAATCGAGT-ATTAGCGGCGCT-TTTC
*
4066385 AAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTC
1 AAAAACGCCGCTAAAAATCGAGTATTAGCGGCGCTTTTC
* *
4066424 TAAAAACGCCACTAAAAAT-GAGCATTAGCGGCG-TTTTAC
1 -AAAAACGCCGCTAAAAATCGAGTATTAGCGGCGCTTTT-C
4066463 AAAAAGCGCCGC-AAAAA
1 AAAAA-CGCCGCTAAAAA
4066480 CCTAAACCTA
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
38 14 0.17
39 21 0.26
40 45 0.55
41 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATCGAGTATTAGCGGCGCTTTTC
Found at i:4066714 original size:41 final size:41
Alignment explanation
Indices: 4066519--4066714 Score: 311
Period size: 41 Copynumber: 4.8 Consensus size: 41
4066509 TTTTTAGCGA
* *
4066519 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCTAGTC
1 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
* * * *
4066560 TTTAGCGGCGTTTTTGATGAAGCGCCACTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
* *
4066601 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAAATCTCTGGTC
1 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
4066642 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
1 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
*
4066683 TTTAGGGGCGTTTTTTAAGAAGCGCCGCTAAA
1 TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAA
4066715 AGCATTTTAT
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 144 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAAGAAGCGCCGCTAAAGCTCTGGTC
Found at i:4067305 original size:15 final size:15
Alignment explanation
Indices: 4067285--4067316 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4067275 TATTTTAATG
4067285 TTTAGGGAGTATGGA
1 TTTAGGGAGTATGGA
*
4067300 TTTAGGGATTATGGA
1 TTTAGGGAGTATGGA
4067315 TT
1 TT
4067317 AGCGTTTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (15 bp):
TTTAGGGAGTATGGA
Found at i:4067990 original size:14 final size:15
Alignment explanation
Indices: 4067960--4067992 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4067950 TTTTTTTATT
*
4067960 TTTATAAAAAATTAA
1 TTTATAAAAAATAAA
4067975 TTTATAAAAAA-AAA
1 TTTATAAAAAATAAA
4067989 TTTA
1 TTTA
4067993 GCATAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TTTATAAAAAATAAA
Found at i:4068059 original size:21 final size:21
Alignment explanation
Indices: 4068035--4068097 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
4068025 TAAATAAGGT
4068035 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGTAGTTAGGGG
*
4068056 TTAGGGGTTAG-ATGTTAGAGG
1 TTAGGGGTTAGTA-GTTAGGGG
* * *
4068077 TTAAGAGTTAGTGATTTAGGG
1 TTAGGGGTTAGT-AGTTAGGG
4068098 TTTAAATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.79
22 5 0.15
23 1 0.03
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (21 bp):
TTAGGGGTTAGTAGTTAGGGG
Found at i:4068264 original size:50 final size:50
Alignment explanation
Indices: 4068183--4068281 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
4068173 TAATTGTAAA
* * * *
4068183 ATAGGGGTTAAGGGTTTAGAGTTTTTGTTTTATGATTTAGGGTTTAGGAG
1 ATAGGAGTTAAGGGTTTAGAGTTTCTATTTTACGATTTAGGGTTTAGGAG
*
4068233 ATAGGAGTTAGGGGTTTAGAGTTTCTATTTTACGATTTAGGGTTTAGGA
1 ATAGGAGTTAAGGGTTTAGAGTTTCTATTTTACGATTTAGGGTTTAGGA
4068282 TTAATTGGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.23, C:0.02, G:0.32, T:0.42
Consensus pattern (50 bp):
ATAGGAGTTAAGGGTTTAGAGTTTCTATTTTACGATTTAGGGTTTAGGAG
Found at i:4078608 original size:40 final size:41
Alignment explanation
Indices: 4078562--4078687 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 41
4078552 TTTATTTTTT
*
4078562 TATTTTTAAAATACTTTTTTTTAATTTTTTTAA-TTTAAAT
1 TATTTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAA
*
4078602 TTTTTTTAAAATAC-TTTTTTTAATTTTTTTAATTTTAAAA
1 TATTTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAA
4078642 TATTTTTAAAATA-TTTTTTTTAATTTTTATTTTAATTTTTAAAA
1 TATTTTTAAAATACTTTTTTTTAA--TTT-TTTTAA-TTTTAAAA
4078686 TA
1 TA
4078688 AATTTTTAGT
Statistics
Matches: 77, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
39 18 0.23
40 40 0.52
42 3 0.04
43 6 0.08
44 10 0.13
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (41 bp):
TATTTTTAAAATACTTTTTTTTAATTTTTTTAATTTTAAAA
Found at i:4078648 original size:11 final size:11
Alignment explanation
Indices: 4078634--4078659 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4078624 ATTTTTTTAA
4078634 TTTTAAAATAT
1 TTTTAAAATAT
4078645 TTTTAAAATAT
1 TTTTAAAATAT
4078656 TTTT
1 TTTT
4078660 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:4078658 original size:29 final size:29
Alignment explanation
Indices: 4078605--4078660 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
4078595 TTTAAATTTT
**
4078605 TTTTAAAATACTTTTTTTAATTTTTTTAA
1 TTTTAAAATACTTTTTAAAATTTTTTTAA
4078634 TTTTAAAATA-TTTTTAAAATATTTTTT
1 TTTTAAAATACTTTTTAAAAT-TTTTTT
4078661 TTAATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (29 bp):
TTTTAAAATACTTTTTAAAATTTTTTTAA
Found at i:4079282 original size:90 final size:90
Alignment explanation
Indices: 4079175--4079386 Score: 388
Period size: 90 Copynumber: 2.4 Consensus size: 90
4079165 ATTAATGAAA
*
4079175 ATAAAGGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAAGTGATTGTTATGTG
1 ATAAAGGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAAGTGATTGCTATGTG
4079240 CTGAATTCACCCGGTACCATTGAGT
66 CTGAATTCACCCGGTACCATTGAGT
*
4079265 ATAAGGGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAAGTGATTGCTATGTG
1 ATAAAGGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAAGTGATTGCTATGTG
*
4079330 CTGAATTCACCTGGTACCATTGAGT
66 CTGAATTCACCCGGTACCATTGAGT
*
4079355 ATAAAGGTGGTTGCTATGTGCTGATTTCACCG
1 ATAAAGGTGATTGCTATGTGCTGATTTCACCG
4079387 AGTACTATTG
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 117 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (90 bp):
ATAAAGGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAAGTGATTGCTATGTG
CTGAATTCACCCGGTACCATTGAGT
Found at i:4079384 original size:135 final size:134
Alignment explanation
Indices: 4079135--4079423 Score: 345
Period size: 135 Copynumber: 2.1 Consensus size: 134
4079125 TGGAAATATA
** *
4079135 GGTGGATGCTATGTGCTGATTGCACCGGATATTAATGAAAATAAAGGTGATTGCTATGTGCTGAT
1 GGTGG-TGCTATGTGCTGATTGCACCGGATACCAATGAAAATAAAGGTGATTGCTATGTGCTGAA
* *
4079200 TTCACCGGATACCAATGGTTATATAAGTGATTGTTATGTGCTGAATTCACCCG-GTACCATTGAG
65 TTCACCGGATACCAATGGTTATATAAGTGATTGCTATGTGCTGAATTCA-CCGAGTACCATTGAC
4079264 TATAAG
129 TATAAG
* * ***
4079270 GGTGATTGCTATGTGCTGATTTCACCGGATACCAATGGTTATATAA-GTGATTGCTATGTGCTGA
1 GGTG-GTGCTATGTGCTGATTGCACCGGATACCAATGAAAATA-AAGGTGATTGCTATGTGCTGA
* * * *
4079334 ATTCACCTGG-TACCATTGAG-TATA-AAGGTGGTTGCTATGTGCTGATTTCACCGAGTACTATT
64 ATTCACC-GGATACCAATG-GTTATATAA-GTGATTGCTATGTGCTGAATTCACCGAGTACCATT
4079396 GACTATAAG
126 GACTATAAG
*
4079405 GGTGGTGCTATGTGTTGAT
1 GGTGGTGCTATGTGCTGAT
4079424 CCACCGTGTA
Statistics
Matches: 132, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
134 18 0.14
135 109 0.83
136 5 0.04
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (134 bp):
GGTGGTGCTATGTGCTGATTGCACCGGATACCAATGAAAATAAAGGTGATTGCTATGTGCTGAAT
TCACCGGATACCAATGGTTATATAAGTGATTGCTATGTGCTGAATTCACCGAGTACCATTGACTA
TAAG
Found at i:4079403 original size:45 final size:45
Alignment explanation
Indices: 4079141--4079386 Score: 288
Period size: 45 Copynumber: 5.5 Consensus size: 45
4079131 TATAGGTGGA
* ** **
4079141 TGCTATGTGCTGATTGCACCGGATATTAATGAAAATAAAGGTGAT
1 TGCTATGTGCTGATTTCACCGGATACCAATGAGTATAAAGGTGAT
4079186 TGCTATGTGCTGATTTCACCGGATACCAATG-GTTATATAA-GTGAT
1 TGCTATGTGCTGATTTCACCGGATACCAATGAG-TATA-AAGGTGAT
* * * *
4079231 TGTTATGTGCTGAATTCACCCGG-TACCATTGAGTATAAGGGTGAT
1 TGCTATGTGCTGATTTCA-CCGGATACCAATGAGTATAAAGGTGAT
4079276 TGCTATGTGCTGATTTCACCGGATACCAATG-GTTATATAA-GTGAT
1 TGCTATGTGCTGATTTCACCGGATACCAATGAG-TATA-AAGGTGAT
* * *
4079321 TGCTATGTGCTGAATTCACCTGG-TACCATTGAGTATAAAGGTGGT
1 TGCTATGTGCTGATTTCACC-GGATACCAATGAGTATAAAGGTGAT
4079366 TGCTATGTGCTGATTTCACCG
1 TGCTATGTGCTGATTTCACCG
4079387 AGTACTATTG
Statistics
Matches: 173, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
44 9 0.05
45 153 0.88
46 11 0.06
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (45 bp):
TGCTATGTGCTGATTTCACCGGATACCAATGAGTATAAAGGTGAT
Found at i:4083471 original size:29 final size:29
Alignment explanation
Indices: 4083429--4083490 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
4083419 ACTAACTTTT
4083429 AAATTCTATAACAATGGTTACAAAACAAA
1 AAATTCTATAACAATGGTTACAAAACAAA
*
4083458 AAATTCTATAACAATGGTTACAGAACAAA
1 AAATTCTATAACAATGGTTACAAAACAAA
4083487 AAAT
1 AAAT
4083491 GTATAGGAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.24
Consensus pattern (29 bp):
AAATTCTATAACAATGGTTACAAAACAAA
Found at i:4085718 original size:3 final size:3
Alignment explanation
Indices: 4085710--4085749 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
4085700 AACGCATTCT
4085710 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
4085750 CCTCTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:4092075 original size:27 final size:28
Alignment explanation
Indices: 4092036--4092093 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
4092026 TTTTAATACT
4092036 TTTTTTTATTTTTTTTTATTTTAAAATA
1 TTTTTTTATTTTTTTTTATTTTAAAATA
4092064 TTTTTTTA-TTTTTTTTATTTTAAAATA
1 TTTTTTTATTTTTTTTTATTTTAAAATA
4092091 TTT
1 TTT
4092094 GAAAATACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTTTTATTTTTTTTTATTTTAAAATA
Found at i:4092093 original size:37 final size:38
Alignment explanation
Indices: 4092052--4092128 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 38
4092042 TATTTTTTTT
* *
4092052 TATTTTAAAATA-TTTTTTTATTTTTTT-TATTTTAAAA
1 TATTTGAAAATACATTTTTTATTTTTTTAT-TTTTAAAA
4092089 TATTTGAAAATACATTTTTTATTTTTTTATTTTTAAAA
1 TATTTGAAAATACATTTTTTATTTTTTTATTTTTAAAA
4092127 TA
1 TA
4092129 AATTTTTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 11 0.31
38 24 0.67
39 1 0.03
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (38 bp):
TATTTGAAAATACATTTTTTATTTTTTTATTTTTAAAA
Found at i:4094157 original size:15 final size:15
Alignment explanation
Indices: 4094137--4094165 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4094127 AGTAAAAGAC
4094137 TGTTAAAACATAAAA
1 TGTTAAAACATAAAA
4094152 TGTTAAAACATAAA
1 TGTTAAAACATAAA
4094166 TAAAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (15 bp):
TGTTAAAACATAAAA
Found at i:4094287 original size:16 final size:16
Alignment explanation
Indices: 4094266--4094298 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4094256 TTCGCTGTAT
4094266 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
4094282 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
4094298 T
1 T
4094299 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:4094383 original size:39 final size:43
Alignment explanation
Indices: 4094278--4094386 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 43
4094268 GAATAGAGGC
4094278 GTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 GTAA-GGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
* * * ***
4094322 TGTAATGGAATAAAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 -GTAA-GGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
4094366 -T-A-GAATAGAGGTGTAATAGCA
1 GTAAGGAATAGAGGTGTAATAGCA
4094387 TAATGGAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 15 0.28
41 1 0.02
42 1 0.02
44 16 0.30
45 21 0.39
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.31
Consensus pattern (43 bp):
GTAAGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
Found at i:4094561 original size:18 final size:16
Alignment explanation
Indices: 4094510--4094553 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
4094500 ATTTAATCAT
* *
4094510 ATTTAAACATAATTATT
1 ATTTAAATAT-ATTATA
4094527 A-TTAAATATATTATA
1 ATTTAAATATATTATA
4094542 ATTTAAATATAT
1 ATTTAAATATAT
4094554 AATTTAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 17 0.71
17 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTAAATATATTATA
Found at i:4094658 original size:120 final size:120
Alignment explanation
Indices: 4094515--4094927 Score: 718
Period size: 120 Copynumber: 3.4 Consensus size: 120
4094505 ATCATATTTA
* *
4094515 AACATAATTATTATTAAATATATTATAATTTAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
4094580 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
4094635 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
4094700 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
4094755 AACATAATTATTACTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
4094820 TATTCTTATATGAATTTACTGAAATCATAATATATGATACTATAAAATATAATTT
66 TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * * * * *
4094875 AAAATAATTAATATTAAATATATTTTATTTAAAATATATGAGTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
4094928 TAAAATAATT
Statistics
Matches: 280, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 280 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:4094680 original size:14 final size:15
Alignment explanation
Indices: 4094631--4094682 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
4094621 ATAAAATATA
4094631 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
4094646 TATTAAATATATTAT
1 AATTAAATATATTAT
4094661 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
4094674 AATTTAATA
1 AATTAAATA
4094683 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:4095029 original size:43 final size:42
Alignment explanation
Indices: 4094968--4095109 Score: 117
Period size: 43 Copynumber: 3.2 Consensus size: 42
4094958 TATGAATTTG
4094968 TATAATTTAAAATAATTATTATACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATA-ATATAATTTAATAATAATA
* **
4095011 TATAATTTCATAA-AATTATTGATAATA-AATTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATAATATAA-TTTAATA-AT-AA--TA
* * * *
4095058 TACAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATA
1 TATAATTTAAAATAATTATTA-T-AATATAATTTAATAATAATA
4095102 TATAATTT
1 TATAATTT
4095110 CATAAATTTC
Statistics
Matches: 77, Mismatches: 11, Indels: 21
0.71 0.10 0.19
Matches are distributed among these distances:
42 2 0.03
43 23 0.30
44 17 0.22
45 2 0.03
46 5 0.06
47 18 0.23
48 8 0.10
49 2 0.03
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATAATATAATTTAATAATAATA
Found at i:4095037 original size:90 final size:90
Alignment explanation
Indices: 4094934--4095149 Score: 292
Period size: 91 Copynumber: 2.4 Consensus size: 90
4094924 AATTTAAAAT
* * * *
4094934 AATTA-TAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTA-TACATATA
1 AATTATTAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATA
4094997 ATTTAATAATAATATATAATTTCATAA
64 ATTTAATAATAATATATAATTTCATAA
* *
4095024 AATTATTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATTTAA
1 AATTATTAATAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
4095089 TTTAATAATGATATATAATTTCATAA
65 TTTAATAATAATATATAATTTCATAA
* *
4095115 ATTTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATTATTAATAAT-AAAT-TTCTTATATGAATTTA
4095150 CTAAAATCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
90 45 0.41
91 47 0.42
92 19 0.17
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
AATTATTAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAAT
TTAATAATAATATATAATTTCATAA
Found at i:4101106 original size:24 final size:24
Alignment explanation
Indices: 4101054--4101107 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
4101044 ACAAAAATAT
*
4101054 TTAAAAT-ATTATTTAAAAACAAA
1 TTAAAATAATTATTTAAAAAAAAA
*
4101077 -TCAAATAATGTA-TTAAAAAAAAA
1 TTAAAATAAT-TATTTAAAAAAAAA
4101100 TTAAAATA
1 TTAAAATA
4101108 TTTTGACTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 5 0.20
23 12 0.48
24 8 0.32
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
TTAAAATAATTATTTAAAAAAAAA
Found at i:4101393 original size:16 final size:16
Alignment explanation
Indices: 4101345--4101393 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
4101335 AAATATTAAT
4101345 ATTATCAATTTAAAAA
1 ATTATCAATTTAAAAA
** *
4101361 A-T-T-AATTTTTAAT
1 ATTATCAATTTAAAAA
4101374 ATTATCAATTTAAAAA
1 ATTATCAATTTAAAAA
4101390 ATTA
1 ATTA
4101394 AATTTCGTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 8 0.33
14 2 0.08
15 2 0.08
16 12 0.50
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTATCAATTTAAAAA
Found at i:4101607 original size:6 final size:6
Alignment explanation
Indices: 4101596--4101621 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
4101586 TTTAACACAT
4101596 ATTAAA ATTAAA ATTAAA ATTAAA AT
1 ATTAAA ATTAAA ATTAAA ATTAAA AT
4101622 ATTCATTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
ATTAAA
Found at i:4102479 original size:44 final size:44
Alignment explanation
Indices: 4102429--4102515 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
4102419 AGGTCAAATA
* * *
4102429 ATATTAAAATAACTTACATTAATCAGAGTTTAAGTAAGAAACTG
1 ATATTAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTG
4102473 ATATTAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACT
1 ATATTAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACT
4102516 AAAAGTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (44 bp):
ATATTAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTG
Found at i:4102525 original size:44 final size:44
Alignment explanation
Indices: 4102433--4102526 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
4102423 CAAATAATAT
* * * * * *
4102433 TAAAATAACTTACATTAATCAGAGTTTAAGTAAGAAACTGATAT
1 TAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTAAAAG
4102477 TAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTAAAAG
1 TAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTAAAAG
4102521 TAAAAT
1 TAAAAT
4102527 TTAATTGGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.28
Consensus pattern (44 bp):
TAAAATAACATACACTAATCAGAGTTTAAGTAAAAAACTAAAAG
Found at i:4118035 original size:36 final size:36
Alignment explanation
Indices: 4117986--4118105 Score: 103
Period size: 35 Copynumber: 3.5 Consensus size: 36
4117976 TTCACTATTT
*
4117986 TATAATTAAATTTTTATTATTTTTAGAAGGTTAAAG
1 TATAATTTAATTTTTATTATTTTTAGAAGGTTAAAG
* * * **
4118022 TATAATTTTATTTTTATTA-ATTTAAAATTTTAAA-
1 TATAATTTAATTTTTATTATTTTTAGAAGGTTAAAG
*
4118056 T-TAA---AATTTTTATTATTTTT-GTAGGGTTAAAG
1 TATAATTTAATTTTTATTATTTTTAG-AAGGTTAAAG
*
4118088 TA-AATTTTATTTTTATTA
1 TATAATTTAATTTTTATTA
4118106 ATTTAAAATT
Statistics
Matches: 64, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
30 10 0.16
31 9 0.14
32 3 0.05
33 3 0.05
34 1 0.02
35 21 0.33
36 17 0.27
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (36 bp):
TATAATTTAATTTTTATTATTTTTAGAAGGTTAAAG
Found at i:4118104 original size:65 final size:65
Alignment explanation
Indices: 4117982--4118120 Score: 228
Period size: 65 Copynumber: 2.1 Consensus size: 65
4117972 AAATTTCACT
4117982 ATTTTATAATTAAATTTTTATTATTTTTAGAAGGTTAAAGTATAATTTTATTTTTATTAATTTAA
1 ATTTTA-AATTAAATTTTTATTATTTTTAGAAGGTTAAAGTATAATTTTATTTTTATTAATTTAA
4118047 A
65 A
*
4118048 ATTTTAAATTAAAATTTTTATTATTTTT-GTAGGGTTAAAGTA-AATTTTATTTTTATTAATTTA
1 ATTTTAAATT-AAATTTTTATTATTTTTAG-AAGGTTAAAGTATAATTTTATTTTTATTAATTTA
4118111 AA
64 AA
4118113 ATTTTAAA
1 ATTTTAAA
4118121 AAATTAAATA
Statistics
Matches: 70, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
65 36 0.51
66 34 0.49
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (65 bp):
ATTTTAAATTAAATTTTTATTATTTTTAGAAGGTTAAAGTATAATTTTATTTTTATTAATTTAAA
Found at i:4118227 original size:22 final size:23
Alignment explanation
Indices: 4118185--4118228 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
4118175 TGTATAATTA
*
4118185 CTTTTTTTTTAAATAGCTTTTTC
1 CTTTTTTTTTAAATAACTTTTTC
*
4118208 CTTTTTTTTT-AATAATTTTTT
1 CTTTTTTTTTAAATAACTTTTT
4118229 AAAGATAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.70
Consensus pattern (23 bp):
CTTTTTTTTTAAATAACTTTTTC
Found at i:4121820 original size:17 final size:19
Alignment explanation
Indices: 4121790--4121825 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
4121780 ATGCATAATA
4121790 ATATTAAAATGTAAATATT
1 ATATTAAAATGTAAATATT
4121809 ATATT-AAA-GTAAATATT
1 ATATTAAAATGTAAATATT
4121826 TAATTTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 3 0.18
19 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (19 bp):
ATATTAAAATGTAAATATT
Found at i:4123720 original size:512 final size:512
Alignment explanation
Indices: 4122569--4124057 Score: 2955
Period size: 512 Copynumber: 2.9 Consensus size: 512
4122559 TGGGAGGCTG
4122569 TCGTTGCATCTCC-AATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
1 TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
4122633 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
66 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
4122698 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
131 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
4122763 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
196 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
4122828 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
261 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
4122893 -TTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
326 TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
4122957 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
391 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
4123022 CATTAATTAACCCTTTGCCTTTTTTGTGTAATTTTTTAGTCTTAAAATTCGAAATTT
456 CATTAATTAACCCTTTGCCTTTTTTGTGTAATTTTTTAGTCTTAAAATTCGAAATTT
4123079 TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
1 TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
4123144 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
66 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
4123209 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
131 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
4123274 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
196 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
4123339 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
261 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
4123404 TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
326 TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
4123469 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
391 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
4123534 CATTAATTAACCCTTTGCCTTTTTTGTGTAATTTTTTAGTCTTAAAATTCGAAATTT
456 CATTAATTAACCCTTTGCCTTTTTTGTGTAATTTTTTAGTCTTAAAATTCGAAATTT
4123591 TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
1 TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
4123656 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
66 TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
4123721 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
131 CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
4123786 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
196 ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
4123851 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
261 CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
4123916 TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
326 TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
*
4123981 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGTAACAACAATTCA
391 ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
4124046 CATTAATTAACC
456 CATTAATTAACC
4124058 TATTGGATAC
Statistics
Matches: 976, Mismatches: 1, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
510 13 0.01
511 311 0.32
512 652 0.67
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.33
Consensus pattern (512 bp):
TCGTTGCATCTCCAAATATGAAATTGATTGTTTCAGAGATGGTGCAATCCAAGAAGAATTGGCGT
TTGCTGAAAACGTAAAGCATGTTTTGGTAACTATCTATCGAACAGTTGTAGAATACTCAACCCAA
CCCAATTTGCTGCCTCTGTCGCAGCTGGCGGTTGGCCTCCCTCAACCCAAATCACAATACTAACT
ATAGTAAATGAAAAGCTTTGAATTTGAAGAACCAAAGAAGAAGAGGGCTCACTTGGATTCTCCTA
CCATGGCTCGTAATTCCTCCACTTTTCCCATCCACACAAAATTTGTAATCTCTCTTTCACACTTC
TTTTTTAAAATAAATACTTTATATTCTCGTCTCTCTCCCTATAATTTTCAAGTCATTGAACTCGC
ACAATAAATTCACAAATTACAATACCTTCTGTATTCCATTCATATATAAAAGCAACAACAATTCA
CATTAATTAACCCTTTGCCTTTTTTGTGTAATTTTTTAGTCTTAAAATTCGAAATTT
Found at i:4133770 original size:26 final size:26
Alignment explanation
Indices: 4133716--4133770 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
4133706 TTACTATGAG
* * * * *
4133716 ATTTTTTTTAATTTAATAAATACATT
1 ATTTTTATTAAATTAAAAAATAAAGT
4133742 ATTTTTATTAAATTAAAAAATAAAGT
1 ATTTTTATTAAATTAAAAAATAAAGT
4133768 ATT
1 ATT
4133771 AATTATATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
ATTTTTATTAAATTAAAAAATAAAGT
Found at i:4135795 original size:30 final size:31
Alignment explanation
Indices: 4135744--4135805 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 31
4135734 CAATAATGGT
4135744 AAAATTATATTTTAACTTTTAAAAATAATAA
1 AAAATTATATTTTAACTTTTAAAAATAATAA
*
4135775 AAAATTA-A-TTTAATCTTTTAAAAATTATAA
1 AAAATTATATTTTAA-CTTTTAAAAATAATAA
4135805 A
1 A
4135806 GATATAGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 5 0.17
30 17 0.59
31 7 0.24
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (31 bp):
AAAATTATATTTTAACTTTTAAAAATAATAA
Found at i:4138178 original size:21 final size:22
Alignment explanation
Indices: 4138152--4138198 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
4138142 CTCTGCTCAA
*
4138152 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
4138173 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
4138195 ACTC
1 ACTC
4138199 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:4152143 original size:10 final size:10
Alignment explanation
Indices: 4152128--4152152 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4152118 TTATAAGGAT
4152128 TTTTTTTATA
1 TTTTTTTATA
4152138 TTTTTTTATA
1 TTTTTTTATA
4152148 TTTTT
1 TTTTT
4152153 AAATGAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:4152861 original size:52 final size:53
Alignment explanation
Indices: 4152772--4152876 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 53
4152762 TTACAAATTC
*
4152772 TTATAATTCCTAATATTTTTTTATAATTTTGTTTAACTTTTAATAACTATTTA
1 TTATAATTCCTAATATTTTTTTATAATTTCGTTTAACTTTTAATAACTATTTA
4152825 TTATAATTCCTAATA-TTTTTTATAATTTCGTTTAACTTTTAATAACTATTTA
1 TTATAATTCCTAATATTTTTTTATAATTTCGTTTAACTTTTAATAACTATTTA
4152877 AGAAACAGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 36 0.71
53 15 0.29
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (53 bp):
TTATAATTCCTAATATTTTTTTATAATTTCGTTTAACTTTTAATAACTATTTA
Found at i:4152994 original size:10 final size:10
Alignment explanation
Indices: 4152979--4153026 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
4152969 TATTTATTAA
4152979 TTTTAATAAT
1 TTTTAATAAT
4152989 TTTTAATAAT
1 TTTTAATAAT
4152999 TTTTATTATAAT
1 TTTTA--ATAAT
* *
4153011 TCTTAATAGT
1 TTTTAATAAT
4153021 TTTTAA
1 TTTTAA
4153027 ATAAATTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 24 0.73
12 9 0.27
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:4153009 original size:22 final size:22
Alignment explanation
Indices: 4152984--4153025 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
4152974 ATTAATTTTA
*
4152984 ATAATTTTTAATAATTTTTATT
1 ATAATTCTTAATAATTTTTATT
*
4153006 ATAATTCTTAATAGTTTTTA
1 ATAATTCTTAATAATTTTTA
4153026 AATAAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATAATTCTTAATAATTTTTATT
Found at i:4153030 original size:33 final size:33
Alignment explanation
Indices: 4152960--4153026 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 33
4152950 AAATTCGTTC
*
4152960 AATACTTTTTATTTATTAATTTTAATAATTTTT
1 AATAATTTTTATTTATTAATTTTAATAATTTTT
*
4152993 AATAATTTTTA-TTA-TAATTCTTAATAGTTTTT
1 AATAATTTTTATTTATTAATT-TTAATAATTTTT
4153025 AA
1 AA
4153027 ATAAATTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 5 0.16
32 16 0.52
33 10 0.32
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (33 bp):
AATAATTTTTATTTATTAATTTTAATAATTTTT
Found at i:4153033 original size:22 final size:21
Alignment explanation
Indices: 4152979--4153033 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
4152969 TATTTATTAA
*
4152979 TTTTAAT-AATTTTTAATAAT
1 TTTTAATAAATTCTTAATAAT
* *
4152999 TTTTATTATAATTCTTAATAGT
1 TTTTAATA-AATTCTTAATAAT
4153021 TTTTAAATAAATT
1 TTTT-AATAAATT
4153034 TGTATGTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.21
22 19 0.68
23 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAATAAATTCTTAATAAT
Found at i:4162941 original size:53 final size:53
Alignment explanation
Indices: 4162872--4162976 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
4162862 TCTATGCTTA
*
4162872 ATCCAACCGAGTTTCCTATTGAAACTAAGTATTCTCATATCTACCACCCCAAC
1 ATCCAACCGAGCTTCCTATTGAAACTAAGTATTCTCATATCTACCACCCCAAC
*
4162925 ATCCAACCGAGCTTCCTATTGAAATTAAGTATTCTCATATCTACCACCCCAA
1 ATCCAACCGAGCTTCCTATTGAAACTAAGTATTCTCATATCTACCACCCCAA
4162977 AGTGTTCTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.32, C:0.31, G:0.08, T:0.29
Consensus pattern (53 bp):
ATCCAACCGAGCTTCCTATTGAAACTAAGTATTCTCATATCTACCACCCCAAC
Found at i:4174098 original size:21 final size:21
Alignment explanation
Indices: 4174047--4174099 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
4174037 AAATTATTAA
**
4174047 AAAAATAATTTTAATTTTTTTT
1 AAAAAT-ATTTTAAAGTTTTTT
**
4174069 TCAAA-ATTTTAAAGTTTTTT
1 AAAAATATTTTAAAGTTTTTT
4174089 AAAAATATTTT
1 AAAAATATTTT
4174100 TTAAGAATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
20 16 0.67
21 5 0.21
22 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
AAAAATATTTTAAAGTTTTTT
Found at i:4175478 original size:17 final size:17
Alignment explanation
Indices: 4175453--4175490 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
4175443 AAAAAAAATT
*
4175453 AATTAAGCCTTTAAAAA
1 AATTAAGCCGTTAAAAA
*
4175470 AATTTAGCCGTTAAAAA
1 AATTAAGCCGTTAAAAA
4175487 AATT
1 AATT
4175491 CAACCTATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.32
Consensus pattern (17 bp):
AATTAAGCCGTTAAAAA
Found at i:4176225 original size:13 final size:13
Alignment explanation
Indices: 4176207--4176233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4176197 AATTTTTTTA
4176207 TAATTATTAATAT
1 TAATTATTAATAT
4176220 TAATTATTAATAT
1 TAATTATTAATAT
4176233 T
1 T
4176234 TATTCACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATTATTAATAT
Found at i:4184873 original size:3 final size:3
Alignment explanation
Indices: 4184867--4184894 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
4184857 AAATTAAGCC
4184867 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
4184895 GTGAAAGGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4200352 original size:31 final size:30
Alignment explanation
Indices: 4200294--4200352 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
4200284 AAAGTGCGCC
*
4200294 TAGTTAAATGATTAATATTATTAATTTTTT
1 TAGTTAAATGATTAATATTAGTAATTTTTT
*
4200324 TAGTTAAATGATTAAATATTAGTGATTTT
1 TAGTTAAATGATT-AATATTAGTAATTTT
4200353 ATTCTTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (30 bp):
TAGTTAAATGATTAATATTAGTAATTTTTT
Found at i:4200622 original size:15 final size:16
Alignment explanation
Indices: 4200602--4200639 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4200592 ATTAAATCAA
4200602 ATAATTATTAA-AAAT
1 ATAATTATTAATAAAT
*
4200617 ATAATTTTTTAATAAAT
1 ATAA-TTATTAATAAAT
4200634 ATAATT
1 ATAATT
4200640 TTTATATGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 4 0.20
16 8 0.40
17 8 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATTATTAATAAAT
Found at i:4200628 original size:16 final size:17
Alignment explanation
Indices: 4200609--4200642 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
4200599 CAAATAATTA
4200609 TTAA-AAATATAATTTT
1 TTAATAAATATAATTTT
4200625 TTAATAAATATAATTTT
1 TTAATAAATATAATTTT
4200642 T
1 T
4200643 ATATGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATAAATATAATTTT
Found at i:4200942 original size:31 final size:31
Alignment explanation
Indices: 4200881--4200942 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
4200871 TATATAAAAA
* *
4200881 ATATATAAAAAAGTTAGTTGATATCTATATT
1 ATATATAAAAAAGTTAGTTAATATCAATATT
* *
4200912 ATATATAAATAAGTTA-TTAATTTCAAATATT
1 ATATATAAAAAAGTTAGTTAATATC-AATATT
4200943 TTTAACATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (31 bp):
ATATATAAAAAAGTTAGTTAATATCAATATT
Found at i:4202106 original size:30 final size:30
Alignment explanation
Indices: 4202072--4202134 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
4202062 ACTTATTTTA
4202072 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
4202102 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
4202132 TTG
1 TTG
4202135 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:4207413 original size:17 final size:17
Alignment explanation
Indices: 4207369--4207413 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
4207359 TTGAGCATCC
4207369 TTTGGTAGAATCATTCA
1 TTTGGTAGAATCATTCA
*
4207386 TGATGG-AGAATCATTCA
1 T-TTGGTAGAATCATTCA
*
4207403 TTTGGTTGAAT
1 TTTGGTAGAAT
4207414 TTATCCAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (17 bp):
TTTGGTAGAATCATTCA
Found at i:4208090 original size:15 final size:15
Alignment explanation
Indices: 4208070--4208109 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
4208060 CTTTGGGCAC
4208070 GTGCAAAGCACCTGG
1 GTGCAAAGCACCTGG
4208085 GTGCAAAGCACCTGG
1 GTGCAAAGCACCTGG
4208100 GTGCAAAGCA
1 GTGCAAAGCA
4208110 TTTGTGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.33, T:0.12
Consensus pattern (15 bp):
GTGCAAAGCACCTGG
Found at i:4211004 original size:17 final size:19
Alignment explanation
Indices: 4210957--4211006 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
4210947 ATAAAAATTA
*
4210957 TTTCTTTTGTATTTGAGTTCT
1 TTTCTTTT-T-TTTGAGCTCT
4210978 TTTCTTTTTTTTGAGCTCT
1 TTTCTTTTTTTTGAGCTCT
4210997 TTT-TTTTTTT
1 TTTCTTTTTTT
4211007 CATTTATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 7 0.25
19 12 0.43
20 1 0.04
21 8 0.29
ACGTcount: A:0.06, C:0.10, G:0.10, T:0.74
Consensus pattern (19 bp):
TTTCTTTTTTTTGAGCTCT
Found at i:4225557 original size:30 final size:24
Alignment explanation
Indices: 4225484--4225533 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
4225474 AAACTACCAT
4225484 AATAAATGTTTTATTATATTAAAA
1 AATAAATGTTTTATTATATTAAAA
4225508 AATAAATGTTTTATTATATTAAAA
1 AATAAATGTTTTATTATATTAAAA
4225532 AA
1 AA
4225534 CATAAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (24 bp):
AATAAATGTTTTATTATATTAAAA
Found at i:4226397 original size:16 final size:18
Alignment explanation
Indices: 4226357--4226398 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
4226347 CCTAAAAAAT
4226357 TCAAGAAAATATCTAAGC
1 TCAAGAAAATATCTAAGC
* *
4226375 TCGAGAAAAT-T-TGAGC
1 TCAAGAAAATATCTAAGC
4226391 TCAAGAAA
1 TCAAGAAA
4226399 GTTTAACATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
17 1 0.05
18 9 0.43
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (18 bp):
TCAAGAAAATATCTAAGC
Found at i:4226704 original size:18 final size:17
Alignment explanation
Indices: 4226683--4226717 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4226673 TTATTATTAA
*
4226683 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
4226701 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
4226718 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:4226779 original size:157 final size:160
Alignment explanation
Indices: 4226564--4226886 Score: 553
Period size: 157 Copynumber: 2.0 Consensus size: 160
4226554 TAGAATACCC
* *
4226564 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTGTTATTTAAATTTTAATAAGA
1 TTAGCAGAAATTTGTTTTGGTAAA-GATTA-T-TTATTGTTATTATTATTTAAATTTTAATAAGA
* * *
4226629 TTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAA
63 TTATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAA
4226694 TTAAAATATATAATTTAATAAAATTCTTAATAA
128 TTAAAATATATAATTTAATAAAATTCTTAATAA
4226727 TTAGCAGAAATTTGTTTTGGT-AA-ATTA-TTATTGTTATTATTATTTAAATTTTAATAAGATTA
1 TTAGCAGAAATTTGTTTTGGTAAAGATTATTTATTGTTATTATTATTTAAATTTTAATAAGATTA
4226789 TTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTA
66 TTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTA
4226854 AAATATATAATTTAATAAAATTCTTAATAA
131 AAATATATAATTTAATAAAATTCTTAATAA
4226884 TTA
1 TTA
4226887 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
157 129 0.83
160 4 0.03
162 2 0.01
163 20 0.13
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (160 bp):
TTAGCAGAAATTTGTTTTGGTAAAGATTATTTATTGTTATTATTATTTAAATTTTAATAAGATTA
TTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTA
AAATATATAATTTAATAAAATTCTTAATAA
Found at i:4226857 original size:16 final size:16
Alignment explanation
Indices: 4226820--4226861 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
4226810 TTAATCATAT
*
4226820 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
4226836 TT-AAATATATTATAA
1 TTAAAATATATTATAA
4226851 TTAAAATATAT
1 TTAAAATATAT
4226862 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:4226868 original size:14 final size:15
Alignment explanation
Indices: 4226829--4226870 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4226819 TTTAAACATA
*
4226829 ATTATTATTAAATAT
1 ATTATAATTAAATAT
4226844 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
4226858 A-TATAATTTAATA
1 ATTATAATTAAATA
4226871 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Done.