Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 121 of 199
Found at i:34598662 original size:30 final size:30
Alignment explanation
Indices: 34598628--34598708 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
34598618 TATTACCATA
*
34598628 TTCTATTTTGGTCACTGAACTTTTCATTGT
1 TTCTATTTTGGTCACTGAACTTTTCATTAT
34598658 TTCTATTTTGGTCACTGAACTTTTCATTAT
1 TTCTATTTTGGTCACTGAACTTTTCATTAT
34598688 TTCTATTTTGGTCACTGAACT
1 TTCTATTTTGGTCACTGAACT
34598709 CTTTAAAATC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (30 bp):
TTCTATTTTGGTCACTGAACTTTTCATTAT
Found at i:34599515 original size:39 final size:41
Alignment explanation
Indices: 34599451--34599528 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 41
34599441 GGTCCCAAAA
*
34599451 ATATTATTTTAGAACATTTTTAAAA-TTTTAACTTTTTTAT
1 ATATTATTTTAGAACATTTTTAAAATTTTTAAATTTTTTAT
*
34599491 ATATT-TTTTAGAA-TTTTTTGAAAATTTTTAAATTTTTT
1 ATATTATTTTAGAACATTTTT-AAAATTTTTAAATTTTTT
34599529 TAAAAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 5 0.15
39 12 0.35
40 17 0.50
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (41 bp):
ATATTATTTTAGAACATTTTTAAAATTTTTAAATTTTTTAT
Found at i:34599518 original size:19 final size:19
Alignment explanation
Indices: 34599495--34599533 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
34599485 TTTTATATAT
34599495 TTTTTAGAATTTTTTGAAAA
1 TTTTTA-AATTTTTTGAAAA
*
34599515 TTTTTAAATTTTTTTAAAA
1 TTTTTAAATTTTTTGAAAA
34599534 AATATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTAAATTTTTTGAAAA
Found at i:34599528 original size:9 final size:9
Alignment explanation
Indices: 34599467--34599528 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 9
34599457 TTTTAGAACA
34599467 TTTTTAAA-
1 TTTTTAAAT
* *
34599475 ATTTTAACT
1 TTTTTAAAT
34599484 TTTTTATATAT
1 TTTTTA-A-AT
34599495 TTTTTAGAAT
1 TTTTTA-AAT
*
34599505 TTTTTGAAAA
1 TTTTT-AAAT
34599515 TTTTTAAAT
1 TTTTTAAAT
34599524 TTTTT
1 TTTTT
34599529 TAAAAAATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
8 6 0.14
9 13 0.30
10 15 0.35
11 9 0.21
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:34599534 original size:20 final size:20
Alignment explanation
Indices: 34599457--34599534 Score: 56
Period size: 20 Copynumber: 4.0 Consensus size: 20
34599447 AAAAATATTA
*
34599457 TTTTAGAACATTTTT-AAAA-
1 TTTTAGAA-TTTTTTAAAAAT
* * *
34599476 TTTTA-ACTTTTTTATATATT
1 TTTTAGAATTTTTTA-AAAAT
*
34599496 TTTTAGAATTTTTTGAAAAT
1 TTTTAGAATTTTTTAAAAAT
34599516 TTTTA-AATTTTTTTAAAAA
1 TTTTAGAA-TTTTTTAAAAA
34599535 ATATATAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
17 5 0.11
18 1 0.02
19 9 0.20
20 23 0.51
21 7 0.16
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTAGAATTTTTTAAAAAT
Found at i:34599574 original size:19 final size:20
Alignment explanation
Indices: 34599545--34599594 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
34599535 ATATATAAAT
*
34599545 TTTGAAATTTTTATAAA-TAA
1 TTTG-AATTTTTAAAAATTAA
*
34599565 TTTGAA-TTTTAAAAATTAT
1 TTTGAATTTTTAAAAATTAA
34599584 TTTGAATTTTT
1 TTTGAATTTTT
34599595 TGTAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 10 0.38
20 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTGAATTTTTAAAAATTAA
Found at i:34599758 original size:24 final size:24
Alignment explanation
Indices: 34599731--34599786 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
34599721 CAAACTCAAA
34599731 ACTCGAATCGAATTATTCGAGTTG
1 ACTCGAATCGAATTATTCGAGTTG
34599755 ACTCGAATCGAATTATTCGAGTTG
1 ACTCGAATCGAATTATTCGAGTTG
34599779 ACTCGAAT
1 ACTCGAAT
34599787 AATTTAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (24 bp):
ACTCGAATCGAATTATTCGAGTTG
Found at i:34603291 original size:27 final size:26
Alignment explanation
Indices: 34603261--34603386 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
34603251 AAATTGTACA
34603261 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
34603288 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
34603315 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
34603342 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
34603370 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
34603387 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 59 0.70
28 23 0.27
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:34603325 original size:54 final size:54
Alignment explanation
Indices: 34603260--34603386 Score: 152
Period size: 54 Copynumber: 2.3 Consensus size: 54
34603250 TAAATTGTAC
* **
34603260 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAA-TATG-
1 AGCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCG-AATCGAACTATGT
* *
34603313 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
34603369 AGCACTAAGTGTGCGATT
1 AGCACTAAGTGTGCGATT
34603387 TGATTGTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
53 3 0.05
54 39 0.61
55 21 0.33
56 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
Found at i:34606926 original size:27 final size:27
Alignment explanation
Indices: 34606834--34606983 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
34606824 ATATTGAGCC
* *
34606834 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
34606861 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
34606889 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
34606916 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
34606943 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
34606970 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34606984 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:34610484 original size:24 final size:24
Alignment explanation
Indices: 34610457--34610512 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
34610447 TATTTAAATT
34610457 ATTCGAGTCAACTCGAATAATTCG
1 ATTCGAGTCAACTCGAATAATTCG
34610481 ATTCGAGTCAACTCGAATAATTCG
1 ATTCGAGTCAACTCGAATAATTCG
34610505 ATTCGAGT
1 ATTCGAGT
34610513 TTTGAGTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (24 bp):
ATTCGAGTCAACTCGAATAATTCG
Found at i:34610674 original size:19 final size:19
Alignment explanation
Indices: 34610650--34610699 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
34610640 AAAATTACAA
*
34610650 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
*
34610669 AAAATTC-AAATTATTTAT
1 AAAATTCAAAATAATTTAT
34610687 AAAATTTCAAAAT
1 AAAA-TTCAAAAT
34610700 TTATATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 10 0.37
20 4 0.15
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:34610703 original size:17 final size:16
Alignment explanation
Indices: 34610662--34610704 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
34610652 AATTCAAAAT
*
34610662 AATTTTTAAAATTCAA
1 AATTTATAAAATTCAA
34610678 ATTATTTATAAAATTTCAA
1 A--ATTTATAAAA-TTCAA
34610697 AATTTATA
1 AATTTATA
34610705 TATTTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 1 0.04
17 7 0.30
18 9 0.39
19 6 0.26
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (16 bp):
AATTTATAAAATTCAA
Found at i:34610730 original size:21 final size:19
Alignment explanation
Indices: 34610709--34610774 Score: 71
Period size: 20 Copynumber: 3.5 Consensus size: 19
34610699 TTTATATATT
34610709 TTTTAAAAAAATTTAAAAA
1 TTTTAAAAAAATTTAAAAA
*
34610728 TTTTCAAAAAATTCTAAAAA
1 TTTTAAAAAAATT-TAAAAA
* * * *
34610748 ATATATAAAAAGTT-AAAA
1 TTTTAAAAAAATTTAAAAA
34610766 TTTTAAAAA
1 TTTTAAAAA
34610775 TGTTCTAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 10 0.27
19 13 0.35
20 14 0.38
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (19 bp):
TTTTAAAAAAATTTAAAAA
Found at i:34610731 original size:20 final size:20
Alignment explanation
Indices: 34610709--34610784 Score: 68
Period size: 20 Copynumber: 4.0 Consensus size: 20
34610699 TTTATATATT
34610709 TTTTAAAAAAATT-TAAAAA
1 TTTTAAAAAAATTCTAAAAA
*
34610728 TTTTCAAAAAATTCTAAAAA
1 TTTTAAAAAAATTCTAAAAA
* * * *
34610748 ATATATAAAAAGT-T-AAAA
1 TTTTAAAAAAATTCTAAAAA
**
34610766 TTTTAAAAATGTTCTAAAA
1 TTTTAAAAAAATTCTAAAA
34610785 TAATATTTTG
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
18 11 0.26
19 14 0.33
20 17 0.40
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (20 bp):
TTTTAAAAAAATTCTAAAAA
Found at i:34611562 original size:30 final size:30
Alignment explanation
Indices: 34611528--34611608 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
34611518 TGATTTAAAG
*
34611528 AGTTCAGTGACCAAAATAGAAATAATGAAA
1 AGTTCAGTGACCAAAATAGAAACAATGAAA
34611558 AGTTCAGTGACCAAAATAGAAACAATGAAA
1 AGTTCAGTGACCAAAATAGAAACAATGAAA
34611588 AGTTCAGTGACCAAAATAGAA
1 AGTTCAGTGACCAAAATAGAA
34611609 TATGGTAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (30 bp):
AGTTCAGTGACCAAAATAGAAACAATGAAA
Found at i:34613459 original size:18 final size:18
Alignment explanation
Indices: 34613432--34613469 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
34613422 CATATCATGA
*
34613432 TGATTTTGGTGGATTTGG
1 TGATTATGGTGGATTTGG
*
34613450 TGATTATGGTGGCTTTGG
1 TGATTATGGTGGATTTGG
34613468 TG
1 TG
34613470 GTGGTGCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.39, T:0.47
Consensus pattern (18 bp):
TGATTATGGTGGATTTGG
Found at i:34615521 original size:25 final size:25
Alignment explanation
Indices: 34615487--34615536 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
34615477 TTGAGTATAC
34615487 TTGGTAGGGTTGGTAGGGAAGGAAA
1 TTGGTAGGGTTGGTAGGGAAGGAAA
34615512 TTGGTAGGGTTGGTAGGGAAGGAAA
1 TTGGTAGGGTTGGTAGGGAAGGAAA
34615537 GTGAAAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.48, T:0.24
Consensus pattern (25 bp):
TTGGTAGGGTTGGTAGGGAAGGAAA
Found at i:34617146 original size:5 final size:5
Alignment explanation
Indices: 34617136--34617168 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
34617126 TTAAAAGCCA
*
34617136 AAAAG AAAAG AAAAG AAAAG AGAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
34617169 CAAAATCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:34619657 original size:13 final size:13
Alignment explanation
Indices: 34619639--34619663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34619629 ACATTTTAAA
34619639 GAATAAAACAATT
1 GAATAAAACAATT
34619652 GAATAAAACAAT
1 GAATAAAACAAT
34619664 AAAGATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (13 bp):
GAATAAAACAATT
Found at i:34635962 original size:15 final size:15
Alignment explanation
Indices: 34635918--34635985 Score: 73
Period size: 15 Copynumber: 4.5 Consensus size: 15
34635908 ATTTCAATAT
* *
34635918 AGTTTCATAATCTAT
1 AGTTTCACAATCTAA
* *
34635933 AGACTTCATAATCTAA
1 AG-TTTCACAATCTAA
* *
34635949 AGTTTCACAGTCTAT
1 AGTTTCACAATCTAA
34635964 AGTTTCACAATCTAA
1 AGTTTCACAATCTAA
34635979 AGTTTCA
1 AGTTTCA
34635986 GTATATAAGG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
15 31 0.70
16 13 0.30
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (15 bp):
AGTTTCACAATCTAA
Found at i:34635978 original size:30 final size:31
Alignment explanation
Indices: 34635918--34635985 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
34635908 ATTTCAATAT
* *
34635918 AGTTTCATAATCTATAGACTTCATAATCTAA
1 AGTTTCACAATCTATAGACTTCACAATCTAA
* *
34635949 AGTTTCACAGTCTATAG-TTTCACAATCTAA
1 AGTTTCACAATCTATAGACTTCACAATCTAA
34635979 AGTTTCA
1 AGTTTCA
34635986 GTATATAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 18 0.55
31 15 0.45
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (31 bp):
AGTTTCACAATCTATAGACTTCACAATCTAA
Found at i:34640391 original size:26 final size:26
Alignment explanation
Indices: 34640362--34640425 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
34640352 TACCCCATAG
*
34640362 CTCGTGTGAGCAGGCCCATTTCACAA
1 CTCGTGTGAGCAGACCCATTTCACAA
* * **
34640388 CTCGTGTGAGCATACTCATTTCATGA
1 CTCGTGTGAGCAGACCCATTTCACAA
34640414 CTCGTGTGAGCA
1 CTCGTGTGAGCA
34640426 ACCATGTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAA
Found at i:34644248 original size:79 final size:81
Alignment explanation
Indices: 34644112--34644296 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
34644102 TTGAATGATG
34644112 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
34644176 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34644191 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTA-AGTCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATA-TCCGGACTAAGAT-CCGAAGGC
*
34644252 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGATACTATA
* *
34644271 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34644297 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 57 0.62
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:34644310 original size:40 final size:40
Alignment explanation
Indices: 34644112--34644315 Score: 231
Period size: 40 Copynumber: 5.1 Consensus size: 40
34644102 TTGAATGATG
* * *
34644112 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
34644152 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
34644191 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
34644230 GTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
34644271 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
34644311 TCCGG
1 TCCGG
34644316 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
39 38 0.27
40 95 0.67
41 9 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:34644318 original size:79 final size:79
Alignment explanation
Indices: 34644165--34644329 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
34644155 GGACTAAGAT
* **
34644165 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34644230 GTCCGGGTTAAGTC
66 GTCCGGGTTAAATC
* *
34644244 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
34644307 TATA-TCC-GGTTAAATT
63 TA-AGTCCGGGTTAAATC
34644323 CCGAAGG
1 CCGAAGG
34644330 TACGTGATTT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 24 0.32
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
GTCCGGGTTAAATC
Found at i:34653543 original size:27 final size:27
Alignment explanation
Indices: 34653513--34653853 Score: 259
Period size: 27 Copynumber: 12.8 Consensus size: 27
34653503 GACTAAAATA
34653513 CCCCTGTAGGGTAAAATGACTGTAATG
1 CCCCTGTAGGGTAAAATGACTGTAATG
* * * *
34653540 CCCCTATATGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACTGTAATG
* * *
34653567 CCCCTGCAGGATAAAAT-AATCGTAATG
1 CCCCTGTAGGGTAAAATGACT-GTAATG
* * ** *
34653594 CCCCTTTAGGGTAAAATAACCATAATA
1 CCCCTGTAGGGTAAAATGACTGTAATG
* * * *
34653621 CCCTTGTAGGGTAAAATTA-TCATAATA
1 CCCCTGTAGGGTAAAATGACT-GTAATG
* * *
34653648 CCCCTATAGGGAAAAATAACTGTAATG
1 CCCCTGTAGGGTAAAATGACTGTAATG
* * **
34653675 CTCGTGTAGGGTAAAATGACCATAAT-
1 CCCCTGTAGGGTAAAATGACTGTAATG
*
34653701 ACCCTGTAGGGTAAAATGAAC-GTAATG
1 CCCCTGTAGGGTAAAATG-ACTGTAATG
* * *
34653728 CCCTTGTAGGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACTGTAATG
* * *
34653755 CCCTTATAGGGTAAAAT-AATCGTAATG
1 CCCCTGTAGGGTAAAATGACT-GTAATG
* * * *
34653782 -CCCTATAGTGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACTGTAATG
*
34653808 CCCCTCTAGGGTAAAATGACTGTAATG
1 CCCCTGTAGGGTAAAATGACTGTAATG
34653835 -CCCTGGT-GGGT-AAATGACT
1 CCCCT-GTAGGGTAAAATGACT
34653854 ATTTTTTCCC
Statistics
Matches: 247, Mismatches: 56, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
25 8 0.03
26 50 0.20
27 187 0.76
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACTGTAATG
Found at i:34653582 original size:54 final size:54
Alignment explanation
Indices: 34653509--34653833 Score: 332
Period size: 54 Copynumber: 6.1 Consensus size: 54
34653499 TCTGGACTAA
* * * *
34653509 AATACCCCTGTAGGGTAAAATGACTGTAATGCCCCTATATGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
* * * * * * *
34653563 AATACCCCTGCAGGATAAAATAATCGTAATGCCCCTTTAGGGTAAAATAACCAT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
* * * * * *
34653617 AATACCCTTGTAGGGTAAAATTATCATAATACCCCTATAGGGAAAAATAACTGT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
* * * * *
34653671 AATGCTCGTGTAGGGTAAAATGACCATAATA-CCCTGTAGGGTAAAATGAA-CGT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAAT-AACCGT
* * * *
34653724 AATGCCCTTGTAGGGTAAAATGACCGTAATACCCTTATAGGGTAAAATAATCGT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
* * * * * *
34653778 AAT-GCCCTATAGTGTAAAATGACCGTAATACCCCTCTAGGGTAAAATGACTGT
1 AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
34653831 AAT
1 AAT
34653834 GCCCTGGTGG
Statistics
Matches: 227, Mismatches: 41, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
53 90 0.40
54 137 0.60
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAACCGT
Found at i:34654286 original size:63 final size:62
Alignment explanation
Indices: 34654100--34654316 Score: 229
Period size: 64 Copynumber: 3.4 Consensus size: 62
34654090 TTTACTGTGA
* * * * * *
34654100 TGCTACTGATGGCTTTGTGTCGATCATAATACCATTACTGATGGTTTTGTACCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCAT-TTA-CGTTACTGATGGTTGTGTGCCGATCATATCAC
* * * * * * *
34654164 CGTTATTGATGG-TTGTGTGTCGATCATTTCACTGTTACTAATAGTTGTGTGCCAATCATATCAC
1 TGCTACTGATGGCTT-TGTGCCGATCATTT-AC-GTTACTGATGGTTGTGTGCCGATCATATCAC
*
34654228 TGCTACTGATGGCTTTGTGCCGATCATGTTACGTTACTGATGGCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCAT-TTACGTTACTGATGGTTGTGTGCCGATCATATCAC
* *
34654291 TGCTACTGATGGCTTTATGCCAATCA
1 TGCTACTGATGGCTTTGTGCCGATCA
34654317 CATTACTGTA
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
63 55 0.43
64 68 0.54
65 4 0.03
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (62 bp):
TGCTACTGATGGCTTTGTGCCGATCATTTACGTTACTGATGGTTGTGTGCCGATCATATCAC
Found at i:34654291 original size:95 final size:95
Alignment explanation
Indices: 34654135--34654336 Score: 246
Period size: 95 Copynumber: 2.1 Consensus size: 95
34654125 ATAATACCAT
* * * * * *
34654135 TACTGATGGTTTTGTACCGATCATATTACCGTTATTGATGGTTGTGTGTCGATCATTTCACTGTT
1 TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGCT
* *
34654200 ACTAATAG-TTGTGTGCCAATCATATCACTG
66 ACTAATAGCTT-TATGCCAATCACATCACTG
* *
34654230 CTACTGATGGCTTTGTGCCGATCATGTTA-CGTTACTGATGGCTGTGTGCCGATCATATCACTGC
1 -TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGC
* * *
34654294 TACTGATGGCTTTATGCCAATCACATTACTG
65 TACTAATAGCTTTATGCCAATCACATCACTG
*
34654325 TACTTATGGCTT
1 TACTGATGGCTT
34654337 GTAGCCATTC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 11 0.12
95 53 0.58
96 27 0.30
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (95 bp):
TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGCT
ACTAATAGCTTTATGCCAATCACATCACTG
Found at i:34654303 original size:32 final size:32
Alignment explanation
Indices: 34654103--34654336 Score: 199
Period size: 32 Copynumber: 7.4 Consensus size: 32
34654093 ACTGTGATGC
* **
34654103 TACTGATGGCTTTGTGTCGATCATAAT-ACCAT
1 TACTGATGGCTTTGTGCCGATCAT-ATCACTGT
* * * *
34654135 TACTGATGGTTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * *
34654167 TATTGATGG-TTGTGTGTCGATCATTTCACTGT
1 TACTGATGGCTT-TGTGCCGATCATATCACTGT
* * * *
34654199 TACTAATAG-TTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATCACTGT
* *
34654231 TACTGATGGCTTTGTGCCGATCATGTTAC-GT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* *
34654262 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * * *
34654294 TACTGATGGCTTTATGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
*
34654325 TACTTATGGCTT
1 TACTGATGGCTT
34654337 GTAGCCATTC
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
31 42 0.25
32 121 0.73
33 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATCACTGT
Found at i:34654334 original size:63 final size:63
Alignment explanation
Indices: 34654209--34654343 Score: 184
Period size: 63 Copynumber: 2.1 Consensus size: 63
34654199 TACTAATAGT
* * **
34654209 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTGTGCCGATCATGTTACGTTACTGATGGC
1 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGTTACTGATGGC
* *
34654272 TGTGTGCCGATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTAC-TGTACTTATGGC
1 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGT-TACTGATGGC
34654335 T-TGTAGCCA
1 TGTGT-GCCA
34654344 TTCTATTTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
62 4 0.06
63 59 0.94
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (63 bp):
TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGTTACTGATGGC
Found at i:34654415 original size:26 final size:26
Alignment explanation
Indices: 34654386--34654438 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
34654376 GACTCTTAGT
* *
34654386 CATTCTAACTACTAGCAGCTCTGCTG
1 CATTATAACTACTAGCAGCTATGCTG
* * *
34654412 CATTATTACTATTGGCAGCTATGCTG
1 CATTATAACTACTAGCAGCTATGCTG
34654438 C
1 C
34654439 GATATTGGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (26 bp):
CATTATAACTACTAGCAGCTATGCTG
Found at i:34671688 original size:9 final size:9
Alignment explanation
Indices: 34671653--34672166 Score: 445
Period size: 9 Copynumber: 57.0 Consensus size: 9
34671643 TTAAACAATA
34671653 ATGTAAGTT
1 ATGTAAGTT
*
34671662 A-GGAAGGTT
1 ATGTAA-GTT
34671671 ATGT-A-TT
1 ATGTAAGTT
34671678 ATGTAAGTT
1 ATGTAAGTT
*
34671687 ATGTAAATT
1 ATGTAAGTT
34671696 ATGTAAGTT
1 ATGTAAGTT
*
34671705 ATGTAATTT
1 ATGTAAGTT
34671714 ATGTAAGTT
1 ATGTAAGTT
34671723 ATGTAAGTT
1 ATGTAAGTT
34671732 ATGTAAGTT
1 ATGTAAGTT
* *
34671741 ATTTAATTT
1 ATGTAAGTT
34671750 ATGTAAGTT
1 ATGTAAGTT
*
34671759 ATGTAAGAT
1 ATGTAAGTT
34671768 ATGTAAGTT
1 ATGTAAGTT
34671777 ATGTAAGTT
1 ATGTAAGTT
*
34671786 ATTTAAGTT
1 ATGTAAGTT
34671795 ATGTAAGTT
1 ATGTAAGTT
34671804 ATGTAAGTT
1 ATGTAAGTT
34671813 ATGTAAGTT
1 ATGTAAGTT
*
34671822 ATTTAA-TT
1 ATGTAAGTT
34671830 AGTGTAAGTT
1 A-TGTAAGTT
34671840 ATGTAAGTT
1 ATGTAAGTT
34671849 ATGTAAGTT
1 ATGTAAGTT
*
34671858 ATTTAA-TT
1 ATGTAAGTT
34671866 AGTGTAAGTT
1 A-TGTAAGTT
34671876 ATGTAAGTT
1 ATGTAAGTT
* *
34671885 ATATAATTT
1 ATGTAAGTT
34671894 ATGTAAGCAATT
1 ATGTAAG---TT
* *
34671906 -TAGAAAAAATT
1 AT-G--TAAGTT
34671917 ATGTAAGTT
1 ATGTAAGTT
34671926 ATGTACTAAGTT
1 ATG---TAAGTT
34671938 ATGT-A-TT
1 ATGTAAGTT
*
34671945 ATGTAAATT
1 ATGTAAGTT
34671954 ATGTACTAAGTT
1 ATG---TAAGTT
34671966 ATGT-A-TT
1 ATGTAAGTT
* *
34671973 ATGTAAATA
1 ATGTAAGTT
* *
34671982 ATTTAAGTA
1 ATGTAAGTT
*
34671991 ATGTATGTT
1 ATGTAAGTT
34672000 ATGTAAGTT
1 ATGTAAGTT
* *
34672009 TTG-CA-TT
1 ATGTAAGTT
34672016 ATGTAAGTT
1 ATGTAAGTT
34672025 ATGTAAGTT
1 ATGTAAGTT
** *
34672034 ATCAAAGTA
1 ATGTAAGTT
*
34672043 ATGTATGTT
1 ATGTAAGTT
34672052 ATGTAAGTT
1 ATGTAAGTT
* *
34672061 TTG-CA-TT
1 ATGTAAGTT
34672068 ATGTAAGTT
1 ATGTAAGTT
34672077 ATGTAAGTT
1 ATGTAAGTT
34672086 ATGTAAGTT
1 ATGTAAGTT
34672095 AAATGT-A-TT
1 --ATGTAAGTT
34672104 ATG-AAGGTT
1 ATGTAA-GTT
34672113 ATGTAAGTT
1 ATGTAAGTT
*
34672122 GTGTAAGTT
1 ATGTAAGTT
*
34672131 GTGTAAGTT
1 ATGTAAGTT
*
34672140 ATGTAACTT
1 ATGTAAGTT
34672149 AAATGT-A-TT
1 --ATGTAAGTT
34672158 ATGTAAGTT
1 ATGTAAGTT
34672167 TATATAAAAA
Statistics
Matches: 413, Mismatches: 53, Indels: 78
0.76 0.10 0.14
Matches are distributed among these distances:
7 34 0.08
8 19 0.05
9 314 0.76
10 11 0.03
11 12 0.03
12 21 0.05
14 2 0.00
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:34671955 original size:28 final size:28
Alignment explanation
Indices: 34671914--34671980 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
34671904 TTTAGAAAAA
*
34671914 ATTATGTAAGTTATGTACTAAGTTATGT
1 ATTATGTAAATTATGTACTAAGTTATGT
34671942 ATTATGTAAATTATGTACTAAGTTATGT
1 ATTATGTAAATTATGTACTAAGTTATGT
34671970 ATTATGTAAAT
1 ATTATGTAAAT
34671981 AATTTAAGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (28 bp):
ATTATGTAAATTATGTACTAAGTTATGT
Found at i:34672019 original size:25 final size:25
Alignment explanation
Indices: 34671991--34672085 Score: 120
Period size: 25 Copynumber: 3.7 Consensus size: 25
34671981 AATTTAAGTA
*
34671991 ATGTATGTTATGTAAGTTTTGCATT
1 ATGTAAGTTATGTAAGTTTTGCATT
* *
34672016 ATGTAAGTTATGTAAGTTAT-CAAAGTA
1 ATGTAAGTTATGTAAGTTTTGC--A-TT
*
34672043 ATGTATGTTATGTAAGTTTTGCATT
1 ATGTAAGTTATGTAAGTTTTGCATT
34672068 ATGTAAGTTATGTAAGTT
1 ATGTAAGTTATGTAAGTT
34672086 ATGTAAGTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.02
25 36 0.61
26 2 0.03
27 19 0.32
28 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (25 bp):
ATGTAAGTTATGTAAGTTTTGCATT
Found at i:34672211 original size:23 final size:23
Alignment explanation
Indices: 34672185--34672228 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
34672175 AAAATTTTAT
*
34672185 AAGTTATGTATTATGTAAGTTAA
1 AAGTAATGTATTATGTAAGTTAA
34672208 AAGTAATGTATTATGTAAGTT
1 AAGTAATGTATTATGTAAGTT
34672229 TACATATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (23 bp):
AAGTAATGTATTATGTAAGTTAA
Found at i:34672285 original size:36 final size:36
Alignment explanation
Indices: 34672245--34672413 Score: 135
Period size: 36 Copynumber: 5.2 Consensus size: 36
34672235 TATGTAAACT
34672245 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
1 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
* *
34672281 TACTTAAA-TTT--T-A--CA--TA--TAAGTAAACT
1 TACTTAAATTTTAGTAAGTAATGTATTTAAGT-AACA
34672308 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
1 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
* *
34672344 TACTTAAA-TTT--T-A--CA--TA--TAAGTAAACT
1 TACTTAAATTTTAGTAAGTAATGTATTTAAGT-AACA
34672371 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
1 TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
*
34672407 TATTTAA
1 TACTTAA
34672414 GTAATAAATT
Statistics
Matches: 102, Mismatches: 9, Indels: 44
0.66 0.06 0.28
Matches are distributed among these distances:
26 10 0.10
27 22 0.22
28 10 0.10
30 4 0.04
31 2 0.02
32 2 0.02
33 4 0.04
35 10 0.10
36 28 0.27
37 10 0.10
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.42
Consensus pattern (36 bp):
TACTTAAATTTTAGTAAGTAATGTATTTAAGTAACA
Found at i:34672295 original size:63 final size:63
Alignment explanation
Indices: 34672227--34672413 Score: 356
Period size: 63 Copynumber: 3.0 Consensus size: 63
34672217 ATTATGTAAG
*
34672227 TTTACATATATGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
1 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
34672290 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
1 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
*
34672353 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAA
1 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAA
34672414 GTAATAAATT
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 122 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (63 bp):
TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
Found at i:34672403 original size:13 final size:13
Alignment explanation
Indices: 34672385--34672436 Score: 61
Period size: 13 Copynumber: 4.0 Consensus size: 13
34672375 TAAATTTTAG
*
34672385 TAAGTAATGTATT
1 TAAGTAATATATT
*
34672398 TAAGTAACATATT
1 TAAGTAATATATT
*
34672411 TAAGTAATAAATT
1 TAAGTAATATATT
34672424 TAA-TATATATATT
1 TAAGTA-ATATATT
34672437 AGTAATAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 2 0.06
13 31 0.94
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:34675196 original size:147 final size:147
Alignment explanation
Indices: 34674979--34675315 Score: 374
Period size: 147 Copynumber: 2.3 Consensus size: 147
34674969 CGGCCTCGTA
* * * *
34674979 TCGATAAATGTTAAAACATTTTTACGGCGTTTTAATTAAAGCGCCACTAACTATAAATCAAAACA
1 TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAATCAAAACA
* * * * *
34675044 CAGTCGCTTCATCAACACTTACCTCAAACCCGTGGTGTTTTAAAAAAATCGCCACTAATAACATT
66 CAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACATT
* * *
34675109 TAAAAAACGGCAACGTT
131 GAAAAAACGACAACATT
* * *
34675126 TCTATAAATGTTAGAACAATGTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAGATC-AAAC
1 TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAA-ATCAAAAC
* * * * ** * *
34675190 GA-AGTCGTTTCCCCAACATTTAACTCAAGCTTGTGGCGTTTCCAAAAAAGCGCCACTAATACCA
65 -ACAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACA
* *
34675254 TTGACAAAATGACAACATT
129 TTGAAAAAACGACAACATT
** *
34675273 TCGATAAA-CATAAATACAATTTTGCGGCGTTTTATGTAAAGCG
1 TCGATAAATGTTAAA-ACAATTTTGCGGCGTTTTAAGTAAAGCG
34675316 ACAGTAATAG
Statistics
Matches: 156, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
146 3 0.02
147 149 0.96
148 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (147 bp):
TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAATCAAAACA
CAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACATT
GAAAAAACGACAACATT
Found at i:34679662 original size:15 final size:15
Alignment explanation
Indices: 34679638--34679668 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34679628 GAATTTTTTG
*
34679638 ATATTTTAATTTCAT
1 ATATTATAATTTCAT
34679653 ATATTATAATTTCAT
1 ATATTATAATTTCAT
34679668 A
1 A
34679669 CATAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATAATTTCAT
Found at i:34689169 original size:31 final size:31
Alignment explanation
Indices: 34689131--34689204 Score: 148
Period size: 31 Copynumber: 2.4 Consensus size: 31
34689121 AAAGTGACTT
34689131 AGAGTGACTAAAATTGACAACTTATCTAATA
1 AGAGTGACTAAAATTGACAACTTATCTAATA
34689162 AGAGTGACTAAAATTGACAACTTATCTAATA
1 AGAGTGACTAAAATTGACAACTTATCTAATA
34689193 AGAGTGACTAAA
1 AGAGTGACTAAA
34689205 TAACAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (31 bp):
AGAGTGACTAAAATTGACAACTTATCTAATA
Found at i:34693478 original size:27 final size:27
Alignment explanation
Indices: 34693448--34693565 Score: 91
Period size: 25 Copynumber: 4.5 Consensus size: 27
34693438 TCTGACCCAT
*
34693448 AGCTCGTCTGAGCAGACCCATTTTCAC
1 AGCTCGTGTGAGCAGACCCATTTTCAC
** * * *
34693475 AGCTTATGTGAGC--ACGCATATTCAT
1 AGCTCGTGTGAGCAGACCCATTTTCAC
* *
34693500 ATCTCGTGTGAGTAGACCCATTTTCAC
1 AGCTCGTGTGAGCAGACCCATTTTCAC
* * * * *
34693527 AGCTCATGTAAGC--ACGCATATTCAT
1 AGCTCGTGTGAGCAGACCCATTTTCAC
34693552 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
34693566 TATATGTACA
Statistics
Matches: 66, Mismatches: 22, Indels: 7
0.69 0.23 0.07
Matches are distributed among these distances:
25 38 0.58
27 28 0.42
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
AGCTCGTGTGAGCAGACCCATTTTCAC
Found at i:34693528 original size:52 final size:52
Alignment explanation
Indices: 34693445--34693565 Score: 197
Period size: 52 Copynumber: 2.3 Consensus size: 52
34693435 CATTCTGACC
* * *
34693445 CATAGCTCGTCTGAGCAGACCCATTTTCACAGCTTATGTGAGCACGCATATT
1 CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
* *
34693497 CATATCTCGTGTGAGTAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
1 CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
34693549 CATAGCTCGTGTGAGCA
1 CATAGCTCGTGTGAGCA
34693566 TATATGTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (52 bp):
CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
Found at i:34694258 original size:20 final size:20
Alignment explanation
Indices: 34694211--34694258 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
34694201 AAGCTAAAGA
*
34694211 AAGAAAATGCAATGGAAAGT
1 AAGAAAATGCAATGGAAAAT
34694231 AATG-AAATGCAAAT-GAAAAT
1 AA-GAAAATGC-AATGGAAAAT
34694251 AAGAAAAT
1 AAGAAAAT
34694259 TTGAAAGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 19 0.79
21 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.19, T:0.17
Consensus pattern (20 bp):
AAGAAAATGCAATGGAAAAT
Found at i:34700183 original size:50 final size:50
Alignment explanation
Indices: 34700117--34700407 Score: 282
Period size: 50 Copynumber: 5.8 Consensus size: 50
34700107 ATTTGGGTAA
* * * *
34700117 AGAGATCCCATGTAAGACCATGTCTGGGACATGACGTTGGCTCCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* ** *
34700167 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* * * *
34700217 ACAGGTCCCATGTAAGACCATGTTTGGGACATCGCATTGGCGCCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
34700267 AGAGGTCCCCGGTAAGACCGTGTCTGGGACATGGCATAGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
34700317 AGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGA--
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCAAGATG
** * * *
34700367 A-ACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
34700408 TGTTATATTC
Statistics
Matches: 195, Mismatches: 44, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
49 32 0.16
50 160 0.82
52 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:34705833 original size:13 final size:13
Alignment explanation
Indices: 34705817--34705852 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
34705807 ATGATTTCAT
34705817 GAAAATTTCGTTC
1 GAAAATTTCGTTC
34705830 GAAAATTTCGTTC
1 GAAAATTTCGTTC
34705843 GAAAATTTCG
1 GAAAATTTCG
34705853 ACGTTTGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (13 bp):
GAAAATTTCGTTC
Found at i:34718330 original size:19 final size:19
Alignment explanation
Indices: 34718308--34718345 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34718298 TCAATCATCC
34718308 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
34718327 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
34718346 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:34721380 original size:40 final size:40
Alignment explanation
Indices: 34721317--34721527 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
34721307 TCTTCGGAAT
* * *
34721317 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
* *
34721356 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
* * * *
34721396 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGTC
* * * *
34721436 TTAGCCCAGATAAAATCACTAGCACAATTGCCCTCGGGTC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
* * *
34721476 TTAACCCGGGT-ATAGCAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAAGC-ACT-AGCACAAATGCCTTCGGGTC
34721516 TTAGCCCGGATA
1 TTAGCCCGGATA
34721528 TCATTCAAAT
Statistics
Matches: 139, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 10 0.07
40 125 0.90
41 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
Found at i:34721473 original size:80 final size:80
Alignment explanation
Indices: 34721337--34721527 Score: 355
Period size: 80 Copynumber: 2.4 Consensus size: 80
34721327 ATAACCACAA
*
34721337 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCCTCGGGTCTTAACC
34721402 CGGGTATAGCAACTC
66 CGGGTATAGCAACTC
*
34721417 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATCACTAGCACAATTGCCCTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCCTCGGGTCTTAACC
34721482 CGGGTATAGCAACTC
66 CGGGTATAGCAACTC
*
34721497 ACACAAATGCCTTCGGGTCTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
34721528 TCATTCAAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 107 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCCTCGGGTCTTAACC
CGGGTATAGCAACTC
Found at i:34724300 original size:27 final size:26
Alignment explanation
Indices: 34724268--34724475 Score: 281
Period size: 27 Copynumber: 7.8 Consensus size: 26
34724258 TCAATTCCTA
*
34724268 GGGGTATTTCAGTCATTTTACCCTTC
1 GGGGTATTTCGGTCATTTTACCCTTC
* *
34724294 GGAGGTATTTCGATCATTTTATCCTTC
1 GG-GGTATTTCGGTCATTTTACCCTTC
*
34724321 GGGGGTATTTTGGTCATTTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
* *
34724348 AGGGGTGTTTCGGTCAATTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
* *
34724375 AGGGGTATTTCGGCCATTTTACCCCTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
*
34724402 GGGGTATTTCGGTCATTTTACCATTC
1 GGGGTATTTCGGTCATTTTACCCTTC
34724428 GGGGGTATTTCGGTCATTTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
34724455 GAGGGTATTTCGGTCATTTTA
1 G-GGGTATTTCGGTCATTTTA
34724476 GGCCCATTAC
Statistics
Matches: 160, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.16
27 132 0.82
28 2 0.01
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTACCCTTC
Found at i:34724440 original size:80 final size:80
Alignment explanation
Indices: 34724267--34724475 Score: 294
Period size: 80 Copynumber: 2.6 Consensus size: 80
34724257 TTCAATTCCT
* * * * *
34724267 AGGGGTATTTCAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTATCCTTCGGGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGG-GGTATTTCGGTCATTTTACCCCTCGGGGGTATTTC
*
34724332 GGTCATTTTACCCTTC
65 GGTCATTTTACCATTC
* * *
34724348 AGGGGTGTTTCGGTCAATTTACCCTTCAGGGGTATTTCGGCCATTTTACCCCTC-GGGGTATTTC
1 AGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCCTCGGGGGTATTTC
34724412 GGTCATTTTACCATTC
65 GGTCATTTTACCATTC
*
34724428 GGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTA
1 AGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTCGGTCATTTTA
34724476 GGCCCATTAC
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 66 0.58
81 44 0.39
82 2 0.02
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTCGGTCATTTTACCCCTCGGGGGTATTTCG
GTCATTTTACCATTC
Found at i:34745404 original size:27 final size:26
Alignment explanation
Indices: 34745372--34745578 Score: 288
Period size: 27 Copynumber: 7.8 Consensus size: 26
34745362 TCAATTCCTA
*
34745372 GGGGTATTTCAGTCATTTTACCCTTC
1 GGGGTATTTCGGTCATTTTACCCTTC
* *
34745398 GGAGGTATTTCGATCATTTTATCCTTC
1 GG-GGTATTTCGGTCATTTTACCCTTC
*
34745425 GGGGTATTTTGGTCATTTTACCCTTC
1 GGGGTATTTCGGTCATTTTACCCTTC
* *
34745451 AGGGGTGTTTCGGTCAATTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
* *
34745478 AGGGGTATTTCGGCCATTTTACCCCTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
*
34745505 GGGGTATTTCGGTCATTTTACCATTC
1 GGGGTATTTCGGTCATTTTACCCTTC
34745531 GGGGGTATTTCGGTCATTTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
34745558 GAGGGTATTTCGGTCATTTTA
1 G-GGGTATTTCGGTCATTTTA
34745579 GGCCCATTAC
Statistics
Matches: 160, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
26 47 0.29
27 113 0.71
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTACCCTTC
Found at i:34745462 original size:53 final size:52
Alignment explanation
Indices: 34745371--34745578 Score: 283
Period size: 53 Copynumber: 3.9 Consensus size: 52
34745361 TTCAATTCCT
* *
34745371 AGGGGTATTTCAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTATCCTTC
1 AGGGGTATTTCGGTCATTTTACCCTTCGG-GGTATTTCGGTCATTTTA-CCTTC
* * *
34745425 -GGGGTATTTTGGTCATTTTACCCTTCAGGGGTGTTTCGGTCAATTTACCCTTC
1 AGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTCGGTCATTTTA-CCTTC
* *
34745478 AGGGGTATTTCGGCCATTTTACCCCTCGGGGTATTTCGGTCATTTTACCATTC
1 AGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTCGGTCATTTTACC-TTC
*
34745531 GGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTA
1 AGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTCGGTCATTTTA
34745579 GGCCCATTAC
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
52 2 0.01
53 90 0.66
54 44 0.32
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (52 bp):
AGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTCGGTCATTTTACCTTC
Found at i:34745507 original size:80 final size:79
Alignment explanation
Indices: 34745371--34745578 Score: 299
Period size: 80 Copynumber: 2.6 Consensus size: 79
34745361 TTCAATTCCT
* * * * *
34745371 AGGGGTATTTCAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTATCCTTCGGGGTATTTTG
1 AGGGGTATTTCGGTCATTTTACCCTTCGG-GGTATTTCGGTCATTTTACCCCTCGGGGTATTTCG
*
34745436 GTCATTTTACCCTTC
65 GTCATTTTACCATTC
* * *
34745451 AGGGGTGTTTCGGTCAATTTACCCTTCAGGGGTATTTCGGCCATTTTACCCCTCGGGGTATTTCG
1 AGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCCTCGGGGTATTTCG
34745516 GTCATTTTACCATTC
65 GTCATTTTACCATTC
*
34745531 GGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTA
1 AGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTCGGTCATTTTA
34745579 GGCCCATTAC
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 110 0.97
81 2 0.02
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (79 bp):
AGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTCGGTCATTTTACCCCTCGGGGTATTTCGG
TCATTTTACCATTC
Found at i:34760606 original size:17 final size:17
Alignment explanation
Indices: 34760584--34760633 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
34760574 TTATTTCTTG
34760584 TTTTCAGTTTTAGTTTA
1 TTTTCAGTTTTAGTTTA
* *
34760601 TTTTCAGGTTTTTATTTTG
1 TTTTCA-G-TTTTAGTTTA
34760620 TTTTC-G-TTTAGTTT
1 TTTTCAGTTTTAGTTT
34760634 GCTTAAGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 7 0.25
17 7 0.25
18 1 0.04
19 13 0.46
ACGTcount: A:0.12, C:0.06, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTTCAGTTTTAGTTTA
Found at i:34761899 original size:19 final size:19
Alignment explanation
Indices: 34761875--34761913 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34761865 ATTTTAATTT
34761875 GATTTT-AAAGATGTTTAAA
1 GATTTTCAAAGA-GTTTAAA
*
34761894 GATTTTCTAAGAGTTTAAA
1 GATTTTCAAAGAGTTTAAA
34761913 G
1 G
34761914 TGGATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (19 bp):
GATTTTCAAAGAGTTTAAA
Found at i:34764624 original size:13 final size:11
Alignment explanation
Indices: 34764588--34764628 Score: 64
Period size: 11 Copynumber: 3.5 Consensus size: 11
34764578 TCACAAAATT
34764588 ATTTCGTAAAA
1 ATTTCGTAAAA
34764599 ATTTCGTAAAA
1 ATTTCGTAAAA
34764610 ATTTCGTTCAAAA
1 ATTTCG-T-AAAA
34764623 ATTTCG
1 ATTTCG
34764629 ACATTTGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 17 0.61
12 1 0.04
13 10 0.36
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (11 bp):
ATTTCGTAAAA
Found at i:34765730 original size:26 final size:26
Alignment explanation
Indices: 34765694--34765744 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
34765684 TTGAATAAAA
34765694 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
34765720 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
34765745 CAATTATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.33, T:0.27
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:34768191 original size:47 final size:47
Alignment explanation
Indices: 34768128--34768493 Score: 606
Period size: 47 Copynumber: 7.7 Consensus size: 47
34768118 ATGATAGTAT
34768128 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
34768175 GGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTTATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34768222 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
34768269 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGGTAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34768316 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAC
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34768363 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
* *
34768412 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAAATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATAA
34768461 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
34768494 CCCGAAGGGC
Statistics
Matches: 300, Mismatches: 14, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
47 211 0.70
49 85 0.28
50 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:34768667 original size:37 final size:37
Alignment explanation
Indices: 34768611--34768689 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34768601 CCGAGCTCTA
* * *
34768611 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
34768648 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34768685 AAGAC
1 AAGAC
34768690 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34770591 original size:43 final size:43
Alignment explanation
Indices: 34770543--34770645 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
34770533 TTGGTTTTCA
34770543 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34770586 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34770629 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
34770646 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:34770662 original size:29 final size:30
Alignment explanation
Indices: 34770627--34770700 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
34770617 GTTGTGAGAT
*
34770627 TGGCACTAAGTGTGCGG-GCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGGAG-TTGAAAGTACA
*
34770656 TGGCACTAAGTGTG-GGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGGAGTTGAAAGTACA
34770685 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34770701 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 7 0.17
29 32 0.80
30 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGGAGTTGAAAGTACA
Found at i:34771101 original size:40 final size:39
Alignment explanation
Indices: 34771057--34771193 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 39
34771047 CATATCCTGA
* *
34771057 CTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGG
* * **
34771097 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CTAAGT-CCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
** * *
34771137 CTAAGTTCCGAAGAGCATTCGTGCTTGTGATATATCCGTG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
*
34771177 CTAAATCCCGAAGAGCA
1 CTAAGT-CCGAAGAGCA
34771194 ATCATGCTGG
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.02
40 67 0.82
41 13 0.16
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
CTAAGTCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
Found at i:34771147 original size:80 final size:81
Alignment explanation
Indices: 34771011--34771207 Score: 204
Period size: 80 Copynumber: 2.5 Consensus size: 81
34771001 TCGAATGATG
** *
34771011 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCTGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
34771073 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
34771091 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
** *
34771155 TCGTGCTTGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
34771171 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
34771208 GTGTATTCGG
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
80 72 0.74
81 19 0.20
82 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:34774673 original size:47 final size:47
Alignment explanation
Indices: 34774610--34775068 Score: 803
Period size: 47 Copynumber: 9.7 Consensus size: 47
34774600 ATGATAGTAT
34774610 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34774657 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34774704 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
34774751 TGCCTAATGGCCGAAGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
34774798 TGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34774845 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-TAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34774891 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAC
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34774938 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
34774987 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATAA
34775036 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
34775069 CCCTAAGGGC
Statistics
Matches: 398, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
46 46 0.12
47 261 0.66
49 87 0.22
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:34775242 original size:37 final size:37
Alignment explanation
Indices: 34775186--34775264 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34775176 CCGAGCTCTA
* * *
34775186 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
34775223 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34775260 AAGAC
1 AAGAC
34775265 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34785590 original size:21 final size:21
Alignment explanation
Indices: 34785565--34785642 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
34785555 ATCTTCAAGG
34785565 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
34785586 ATATGCAATCTTGGATATG--
1 ATATGCAATCTTAGATATGAT
34785605 ATATGCAATCTTGAAAGATATGAT
1 ATATGCAATCTT---AGATATGAT
* *
34785629 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
34785643 GATTTAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 3 0.06
21 18 0.38
22 6 0.12
23 9 0.19
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:34792679 original size:44 final size:43
Alignment explanation
Indices: 34792631--34792862 Score: 107
Period size: 44 Copynumber: 5.3 Consensus size: 43
34792621 AGACACCAGC
34792631 CTTGCCTCCATGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
1 CTTGCCTCC-TGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* * * * * * * *
34792675 CTTGCCTTCCTGCATCGACAGCGAAGCAAAT-C-GAAGACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGC--ATGCTAAAAATAGCAGAT
* * *
34792719 CTTGTCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCTGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
34792763 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
34792807 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
34792851 CTTGCCTTCCTG
1 CTTGCC-TCCTG
34792863 CACTGACAAC
Statistics
Matches: 129, Mismatches: 43, Indels: 33
0.63 0.21 0.16
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 33 0.26
44 55 0.43
45 36 0.28
46 1 0.01
47 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (43 bp):
CTTGCCTCCTGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
Found at i:34792895 original size:88 final size:87
Alignment explanation
Indices: 34792573--34792878 Score: 495
Period size: 88 Copynumber: 3.5 Consensus size: 87
34792563 AGCAGATCGG
*
34792573 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCTAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
34792638 CCATGGATTGCAGCGGAGCATGC
66 CCCTGG-TTGCAGCGGAGCAGGC
* * *
34792661 TAAAAATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAAATCGAAGACACCAGCCTTGTCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
34792726 CCCTGGGTTGCAGCGGAGCAGGC
66 CCCT-GGTTGCAGCGGAGCAGGC
* *
34792749 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
34792814 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCT-GGTTGCAGCGGAGCAGGC
* *
34792837 TAAAAATAGCAGATCTTGCCTTCCTGCACTGACAACGAAGCA
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCA
34792879 TATTGATGAA
Statistics
Matches: 202, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
88 200 0.99
89 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (87 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGTTGCAGCGGAGCAGGC
Found at i:34793022 original size:44 final size:44
Alignment explanation
Indices: 34792897--34793785 Score: 1159
Period size: 44 Copynumber: 20.8 Consensus size: 44
34792887 AACCCAGCCA
* *
34792897 TATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
34792941 TATCTCCCTGGACA-AAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
34792984 TATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
34793028 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
34793072 TATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
34793110 TATCTCCCTGGTCAGCAGTGGAATAAGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
34793154 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
34793198 TATCTCCCTGGTCAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
34793236 TATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
34793280 TATCTCCCTGGACAGCAGTGGAATAGGTTAAATATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * **
34793324 TATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
34793368 TATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
34793406 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
34793450 TATCTCCCTGGACAGAAGTGGAATAGGTTAAAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
34793494 TATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
34793538 TATCTCCCTAAG-CAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
34793576 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
34793620 TATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
34793664 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
34793708 TATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
34793752 TATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGA
34793786 GTCCTATCTC
Statistics
Matches: 737, Mismatches: 78, Indels: 60
0.84 0.09 0.07
Matches are distributed among these distances:
37 3 0.00
38 126 0.17
40 4 0.01
42 4 0.01
43 41 0.06
44 554 0.75
45 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:34793161 original size:126 final size:128
Alignment explanation
Indices: 34792897--34793785 Score: 1053
Period size: 126 Copynumber: 6.9 Consensus size: 128
34792887 AACCCAGCCA
* * *
34792897 TATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCCTATCTCCCTGGACA-AAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
* * *
34792961 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTGTGAAT
66 AATAGGTTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
34793026 CC
127 CC
* * * * *
34793028 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
* * *
34793093 AATAGATTAAAGA-G-CCCTATCTCCCTGGTCAGCAGTGGAATAAGTTAAAGATTGTGAATCC
66 AATAGGTTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
34793154 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
* * * *
34793219 AATAGATTAAAGA-G-CCCTATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCC
66 AATAGGTTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
34793280 TATCTCCCTGGACAGCAGTGGAATAGGTTAAATATTGTGAATCCTATCTCCCAGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
* ** *
34793345 AATAGGTTGAAGATTGAGAATTTTATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--
66 AATAGGTTAAAGA-T--G-ATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAA
*
34793403 CCC
126 TCC
*
34793406 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGAAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
* * *
34793471 AATAGGTTAAAGATTGTAAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
66 AATAGGTTAAAGA-TG---ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
*
34793536 TC
127 CC
* * * *
34793538 TATCTCCCTAAG-CAGCAGTGGAATAGATTAAAGA----G--CCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
*
34793596 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAA
65 GAATAGGTTAAAGA---TG-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAA
34793661 TCC
126 TCC
34793664 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
*
34793729 AATAGGTTAAAGATTGTGAATCCTATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA
66 AATAGGTTAAAGA---TG-ATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGA
34793786 GTCCTATCTC
Statistics
Matches: 664, Mismatches: 66, Indels: 55
0.85 0.08 0.07
Matches are distributed among these distances:
124 1 0.00
125 3 0.00
126 446 0.67
128 5 0.01
130 3 0.00
131 51 0.08
132 150 0.23
133 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (128 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTGG
AATAGGTTAAAGATGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:34793284 original size:170 final size:169
Alignment explanation
Indices: 34792892--34793785 Score: 1255
Period size: 170 Copynumber: 5.2 Consensus size: 169
34792882 TGATGAACCC
* * * *
34792892 AGCCATATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCCTATCTCCCTGGACA-A
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* * * *
34792956 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* * *
34793021 TGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTG
131 AGAATCCTATCTCCCTGG-CAGCAGTGGAATAGATT-AA-A--G
** * * * *
34793065 AGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA----G--CCCTATCTCCCTGGTCA
1 AG--CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACA
* *
34793124 GCAGTGGAATAAGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGAT
64 GCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAT
34793189 TGAGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTAAAG
129 TGAGAATCCTATCTCCCTGG-CAGCAGTGGAATAGATTAAAG
* *
34793231 AGCCCTATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* *
34793296 AGTGGAATAGGTTAAATATTGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
**
34793361 AGAATTTTATCTCCCTAGGCAGCAGTGGAATAGATTAAAG
131 AGAATCCTATCTCCCT-GGCAGCAGTGGAATAGATTAAAG
*
34793401 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGA
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* *
34793466 AGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* *
34793531 AGAATTCTATCTCCCTAAGCAGCAGTGGAATAGATTAAAG
131 AGAATCCTATCTCCCT-GGCAGCAGTGGAATAGATTAAAG
34793571 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
*
34793636 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* *
34793701 TGAATCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAG
131 AGAATCCTATCTCCCTGG-CAGCAGTGGAATAGATTAAAG
* *
34793741 ATTGTGAATCCTATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA
1 A----G--CCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGA
34793786 GTCCTATCTC
Statistics
Matches: 651, Mismatches: 52, Indels: 33
0.88 0.07 0.04
Matches are distributed among these distances:
164 31 0.05
166 3 0.00
168 2 0.00
169 18 0.03
170 527 0.81
171 3 0.00
173 2 0.00
174 1 0.00
175 30 0.05
176 31 0.05
177 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (169 bp):
AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
AGAATCCTATCTCCCTGGCAGCAGTGGAATAGATTAAAG
Found at i:34794631 original size:47 final size:47
Alignment explanation
Indices: 34794516--34794631 Score: 223
Period size: 47 Copynumber: 2.5 Consensus size: 47
34794506 TAGCCAAAAA
*
34794516 TCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
34794563 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
34794610 TCATCACATCGGCCATTAGGCC
1 TCATCACATCGGCCATTAGGCC
34794632 ATACTATCAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.30
Consensus pattern (47 bp):
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
Found at i:34797087 original size:44 final size:44
Alignment explanation
Indices: 34797024--34797567 Score: 600
Period size: 44 Copynumber: 12.6 Consensus size: 44
34797014 GGGTGTCACA
*
34797024 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * **
34797068 ATCTCCTTGGTCAGCAGTGGAATAGGTTTAAGATTGAGAATTTT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
34797112 ATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA----G--CCCT
1 ATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
*
34797150 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAATATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * *
34797194 ATCTCCCTGGACAGTAGTGGAATATGTTAAAGATTGTAAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * *
34797238 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
34797282 ATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--CCCT
1 ATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
*
34797320 ATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
34797364 ATCTCCCTGGACAGCAGTGGGATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * *
34797408 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * * *
34797452 ATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGTCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGA-ATCCT
* * **
34797496 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATCATGAA-CGCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATC-CT
* *
34797540 ATCTCCCTGAG-CAGTAGTGGAGTAGGTT
1 ATCTCCCTG-GTCAGCAGTGGAATAGGTT
34797568 GAAAATAACA
Statistics
Matches: 421, Mismatches: 59, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
37 4 0.01
38 59 0.14
40 2 0.00
42 2 0.00
43 2 0.00
44 345 0.82
45 7 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
Found at i:34797306 original size:170 final size:170
Alignment explanation
Indices: 34797024--34797567 Score: 822
Period size: 170 Copynumber: 3.2 Consensus size: 170
34797014 GGGTGTCACA
*
34797024 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCTTGGTCAGCAGTGGA
1 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGA
* * *
34797089 ATAGGTTTAAGATTGAGAATTTTATCTCCCTAGGTAGCAGTGGAATAGATTAAAGAGCCCTATCT
66 ATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAGAGCCCTATCT
*
34797154 CCCTGGTCAGCAGTGGAATAGGTTAAATATTGTGAATCCT
131 CCCTGGTCAGCAGTGGAATAGGTTAAACATTGTGAATCCT
* * *
34797194 ATCTCCCTGGACAGTAGTGGAATATGTTAAAGATTGTAAATCCTATCTCCCTGGTCAGCAGTGGA
1 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGA
34797259 ATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAGAGCCCTATCT
66 ATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAGAGCCCTATCT
* *
34797324 CCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
131 CCCTGGTCAGCAGTGGAATAGGTTAAACATTGTGAATCCT
* *
34797364 ATCTCCCTGGACAGCAGTGGGATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGA
1 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGA
* * *
34797429 ATAGGTTGAAGATTGAGAATTCTATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTGTAGGTC
66 ATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATT-AA-A--G-A-GCC
* **
34797494 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATCATGAA-CGCT
125 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAACATTGTGAATC-CT
* *
34797540 ATCTCCCT-GAGCAGTAGTGGAGTAGGTT
1 ATCTCCCTGGA-CAGCAGTGGAATAGGTT
34797568 GAAAATAACA
Statistics
Matches: 341, Mismatches: 25, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
170 270 0.79
171 2 0.01
172 1 0.00
174 1 0.00
175 4 0.01
176 63 0.18
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (170 bp):
ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGA
ATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAGAGCCCTATCT
CCCTGGTCAGCAGTGGAATAGGTTAAACATTGTGAATCCT
Found at i:34797393 original size:214 final size:211
Alignment explanation
Indices: 34797024--34797520 Score: 630
Period size: 214 Copynumber: 2.3 Consensus size: 211
34797014 GGGTGTCACA
* * *
34797024 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCTTGGTCAGCAGTGGA
1 ATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGGA
* ***
34797089 ATAGGTTTAAGATTGAGAATTTTATCTCCCTAGGTAGCAGTGGAATAGATTAAAGAGCCCTATCT
66 ATA-GATTAAGA-TGAG-ACCCTATCTCCCTAGGTAGCAGTGGAATAGATTAAAGAGCCCTATCT
* * *
34797154 CCCTGGTCAGCAGTGGAATAGGTTAAATATTGTGAATCCTATCTCCCTGGACAGTAGTGGAATAT
128 CCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGTAGTGGAATAG
34797219 GTTAAAGATTGTA-AATCCT
193 GTTAAAGATTG-AGAATCCT
* *
34797238 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGG-CAGCAGTGG
1 ATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCT-GGTCAGCAGTGG
* *
34797302 AATAGATTAA-A-GAG-CCCTATCTCCCTA-GTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
65 AATAGATTAAGATGAGACCCTATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA----G--CCC
* *
34797363 TATCTCCCTGGACAGCAGTGGGATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGG
123 TATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGTAGTGG
* *
34797428 AATAGGTTGAAGATTGAGAATTCT
188 AATAGGTTAAAGATTGAGAATCCT
* * * *
34797452 ATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG-GTCCTATCTCCCTGGTCAGCAGTGG
1 ATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTG-AGAATCCTATCTCCCTGGTCAGCAGTGG
34797516 AATAG
65 AATAG
34797521 GTTGAACATC
Statistics
Matches: 249, Mismatches: 23, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
207 2 0.01
208 30 0.12
210 3 0.01
212 2 0.01
213 8 0.03
214 200 0.80
215 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (211 bp):
ATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGGA
ATAGATTAAGATGAGACCCTATCTCCCTAGGTAGCAGTGGAATAGATTAAAGAGCCCTATCTCCC
TGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGTAGTGGAATAGGTT
AAAGATTGAGAATCCT
Found at i:34797706 original size:50 final size:50
Alignment explanation
Indices: 34797643--34797784 Score: 131
Period size: 50 Copynumber: 2.8 Consensus size: 50
34797633 CTTGATGTTG
* * * *
34797643 CAATGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTG
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
* * * * * ****
34797693 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCTTGGCAGTA
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
* * * *
34797743 TAGTGGAATAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
34797785 TGATATTCCA
Statistics
Matches: 69, Mismatches: 23, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
Found at i:34797914 original size:44 final size:44
Alignment explanation
Indices: 34797821--34798017 Score: 120
Period size: 44 Copynumber: 4.6 Consensus size: 44
34797811 ATGGCAAATA
* * *
34797821 TTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGTCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCATAATC
* * * *
34797865 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ACCTTGGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCAT-AATC
* * * * * * *
34797909 TTATCTCTCTGAAGTTACAG-AGAGTAGA-T--CGCATC-TAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-ACCATAATC
* * * *
34797949 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAATA-AATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCAT-AATC
* * * *
34797993 CTACCTCCCTAAAGTTGTAGTGGAG
1 TTATCTCCCTGAAGTTGCAGTGGAG
34798018 TGGATCAGAA
Statistics
Matches: 113, Mismatches: 31, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
40 19 0.17
41 7 0.06
42 4 0.04
43 9 0.08
44 74 0.65
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCATAATC
Found at i:34798055 original size:128 final size:129
Alignment explanation
Indices: 34797821--34798072 Score: 319
Period size: 128 Copynumber: 2.0 Consensus size: 129
34797811 ATGGCAAATA
* * * ** * *
34797821 TTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAATAATCCTACCTCCCTAAAGTTGCAGT
* * * * *
34797886 GGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTACAG-AGAGTAGATCGCATCTAGTC
66 GGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATCTAGTC
*
34797949 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAA-TAAATAAATCCTACCTCCCTAAAGTTGTAG
1 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAAT-AATCCTACCTCCCTAAAGTTGCAG
* * ** *
34798013 TGGAGTGGATCAGAATGATGGATCTTATCTCTCTAAAATTACAGTATAGTAGACCGCATC
65 TGGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATC
34798073 AAATTTATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
127 3 0.03
128 88 0.85
129 13 0.12
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAATAATCCTACCTCCCTAAAGTTGCAGT
GGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATCTAGTC
Found at i:34799371 original size:20 final size:20
Alignment explanation
Indices: 34799332--34799371 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
34799322 AGTTTTTTTT
**
34799332 ATTTTTTTAATTTCCCTTTA
1 ATTTTTTTAATTTCAATTTA
34799352 ATTTTTTTAATTTCAATTTA
1 ATTTTTTTAATTTCAATTTA
34799372 GCCCTATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTTTTAATTTCAATTTA
Found at i:34799631 original size:27 final size:26
Alignment explanation
Indices: 34799576--34799640 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 26
34799566 AATTATTTTT
*
34799576 TATGTAATTTTTATTATTTATATATA
1 TATGTAATTTTTATTATTTATATACA
* *
34799602 TATGTACATTTGTTGTT-TTTATGTACA
1 TATGTA-ATTT-TTATTATTTATATACA
* *
34799629 TATTTATTTTTT
1 TATGTAATTTTT
34799641 TTAATGAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.06
26 9 0.28
27 17 0.53
28 4 0.12
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (26 bp):
TATGTAATTTTTATTATTTATATACA
Found at i:34800825 original size:14 final size:14
Alignment explanation
Indices: 34800806--34800848 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
34800796 TTGTCGGTTG
34800806 TTTATTT-TTTCTTA
1 TTTATTTATTT-TTA
34800820 TTTATTTATTTATT-
1 TTTATTTATTT-TTA
34800834 TTTATTTATTTTTA
1 TTTATTTATTTTTA
34800848 T
1 T
34800849 CTCATTAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 2 0.08
14 19 0.73
15 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTATTTTTA
Found at i:34800827 original size:18 final size:18
Alignment explanation
Indices: 34800806--34800844 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
34800796 TTGTCGGTTG
34800806 TTTATTT-TTTCTTATTTA
1 TTTATTTATTT-TTATTTA
34800824 TTTATTTATTTTTATTTA
1 TTTATTTATTTTTATTTA
34800842 TTT
1 TTT
34800845 TTATCTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTATTTATTTTTATTTA
Found at i:34801624 original size:41 final size:41
Alignment explanation
Indices: 34801579--34801657 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
34801569 TGGCGCTAAC
* * * *
34801579 AGAAAAACGCCGCAATAGGTAAAGAAGTAGCGGCGTTTATA
1 AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTTATA
*
34801620 AGAAAAACACCACAAAAGGTAAAGTAGTAACGGCGTTT
1 AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTT
34801658 TTCTCATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.16
Consensus pattern (41 bp):
AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTTATA
Found at i:34801876 original size:25 final size:25
Alignment explanation
Indices: 34801842--34801920 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
34801832 GATTGTCCCT
* *
34801842 TCTACTGCATCACTATCGACACTCC
1 TCTACCGCATCACTGTCGACACTCC
* *
34801867 TCTACCGCATTACCGTC-AGCACTCC
1 TCTACCGCATCACTGTCGA-CACTCC
* *
34801892 TTTGCCGCATCA-TCGTCGACACTCC
1 TCTACCGCATCACT-GTCGACACTCC
34801917 TCTA
1 TCTA
34801921 TTGCATCGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.20, C:0.41, G:0.11, T:0.28
Consensus pattern (25 bp):
TCTACCGCATCACTGTCGACACTCC
Found at i:34802201 original size:22 final size:23
Alignment explanation
Indices: 34802176--34802220 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
34802166 TTTTTTTGGG
*
34802176 TTATTTTTTAGGTT-TATTATTA
1 TTATTTTTTAGGTTATATCATTA
*
34802198 TTATTTTTTGGGTTATATCATTA
1 TTATTTTTTAGGTTATATCATTA
34802221 ACTTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.22, C:0.02, G:0.11, T:0.64
Consensus pattern (23 bp):
TTATTTTTTAGGTTATATCATTA
Found at i:34802927 original size:28 final size:28
Alignment explanation
Indices: 34802896--34802988 Score: 84
Period size: 28 Copynumber: 3.2 Consensus size: 28
34802886 TAATTAAATA
34802896 AATAATCATATTTCATAATAATTTTATG
1 AATAATCATATTTCATAATAATTTTATG
** *
34802924 AATAA-CTATTTAATTTTCGAT--TAATTAAATA
1 AATAATC-A--T-A-TTTC-ATAATAATTTTATG
34802955 AATAATCATATTTCATAATAATTTTATG
1 AATAATCATATTTCATAATAATTTTATG
34802983 AATAAT
1 AATAAT
34802989 TATTTAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
26 2 0.04
27 5 0.10
28 20 0.40
29 1 0.02
30 1 0.02
31 14 0.28
32 5 0.10
33 2 0.04
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (28 bp):
AATAATCATATTTCATAATAATTTTATG
Found at i:34802949 original size:31 final size:31
Alignment explanation
Indices: 34802914--34803008 Score: 76
Period size: 27 Copynumber: 3.2 Consensus size: 31
34802904 TATTTCATAA
*
34802914 TAATTTTATGAATAACTATTTAATTTTCGAT
1 TAATTTTATGAATAAATATTTAATTTTCGAT
* *
34802945 TAA--TTA--AATAAATA-ATCATATTTC-AT
1 TAATTTTATGAATAAATATTTAAT-TTTCGAT
* *
34802971 AATAATTTTATGAATAATTATTTAATTTTTGAT
1 --TAATTTTATGAATAAATATTTAATTTTCGAT
34803004 TAATT
1 TAATT
34803009 AAATAAATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 18
0.66 0.10 0.25
Matches are distributed among these distances:
26 5 0.10
27 11 0.23
28 3 0.06
29 3 0.06
30 3 0.06
31 8 0.17
32 10 0.21
33 5 0.10
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (31 bp):
TAATTTTATGAATAAATATTTAATTTTCGAT
Found at i:34802966 original size:59 final size:59
Alignment explanation
Indices: 34802878--34803026 Score: 280
Period size: 59 Copynumber: 2.5 Consensus size: 59
34802868 AGTTAATTAG
34802878 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
1 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
*
34802937 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAATTATTTAA
1 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
*
34802996 TTTTTGATTAATTAAATAAATAATCATATTT
1 TTTTCGATTAATTAAATAAATAATCATATTT
34803027 AAAGTTAATG
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 88 1.00
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (59 bp):
TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
Found at i:34803018 original size:31 final size:31
Alignment explanation
Indices: 34802924--34803028 Score: 83
Period size: 31 Copynumber: 3.4 Consensus size: 31
34802914 TAATTTTATG
* *
34802924 AATAACTATTTAATTTTCGATTAATTAAATA
1 AATAATTATTTAATTTTTGATTAATTAAATA
* * * ** *
34802955 AATAATCA--T-ATTTCAT-AATAATTTTATG
1 AATAATTATTTAATTT-TTGATTAATTAAATA
34802983 AATAATTATTTAATTTTTGATTAATTAAATA
1 AATAATTATTTAATTTTTGATTAATTAAATA
34803014 AATAATCATATTTAA
1 AATAAT--TATTTAA
34803029 AGTTAATGAT
Statistics
Matches: 53, Mismatches: 14, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
28 19 0.36
29 1 0.02
30 2 0.04
31 24 0.45
33 7 0.13
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (31 bp):
AATAATTATTTAATTTTTGATTAATTAAATA
Found at i:34803070 original size:43 final size:43
Alignment explanation
Indices: 34803023--34803105 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
34803013 AAATAATCAT
34803023 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
1 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
* *
34803066 ATTTAAAGTTAATGATTATCATAACTTATATAAACATTTA
1 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTA
34803106 GAGAATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.39
Consensus pattern (43 bp):
ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
Found at i:34811531 original size:247 final size:247
Alignment explanation
Indices: 34811088--34811576 Score: 771
Period size: 247 Copynumber: 2.0 Consensus size: 247
34811078 GAAGTGCAGT
* *
34811088 GAAAGGCCTCGAGCCTAATTTACAGGCAGCTCAGCTGCAAACCACTATCTAGTGCCACATTCAGT
1 GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
* * * * *
34811153 CCTTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCTCACATGGAGTGTAGGGTTGGACGGA
66 ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
* *
34811218 GTTGGAGTGTAGAGGCTGGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAGTATTG
131 GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
* *
34811283 ATACTGTAATGGGCCAAGGCCCAAATGCATGACTGCTTATGTATTGTTCGGA
196 ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGTTCGGA
* * ** **
34811335 GAAAGGCCTCGAGCCTAATTTACTGACAGTTCAACTGCAAACCACTATCTAGTGCCGGATTTGGT
1 GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
* *
34811400 ACGTTTTGGAGTGTAGGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
66 ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
* *
34811465 GTTGGAGTGTTGAGGCTAGTTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
131 GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
* *
34811530 ATACTGTAATGAGCCAAGGCCCAAATGTATGACTACTTCTGTATTGT
196 ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGT
34811577 AATGGGCTAA
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
247 219 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (247 bp):
GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGTTCGGA
Found at i:34811536 original size:18 final size:19
Alignment explanation
Indices: 34811499--34811537 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34811489 TAGGATTTGA
* *
34811499 TACTGCATATCTGTTACTG
1 TACTGAATATCTGATACTG
34811518 TACTGAATAT-TGATACTG
1 TACTGAATATCTGATACTG
34811536 TA
1 TA
34811538 ATGAGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (19 bp):
TACTGAATATCTGATACTG
Found at i:34811817 original size:6 final size:6
Alignment explanation
Indices: 34811806--34811832 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
34811796 TTTAATTAGG
34811806 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
34811833 TTGAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:34814571 original size:25 final size:25
Alignment explanation
Indices: 34814509--34814589 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
34814499 AGTAAGTTTT
* * * *
34814509 CTGAAACTATTTTTGATAGTATATC
1 CTGAAACTACTATAGATAGTATATA
* * *
34814534 CTGAAATTGCTATAGGTAGTATATA
1 CTGAAACTACTATAGATAGTATATA
*
34814559 CTGAGACTACTATAGATAG-ACTATA
1 CTGAAACTACTATAGATAGTA-TATA
34814584 CTGAAA
1 CTGAAA
34814590 ACACTCAAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
24 1 0.02
25 42 0.98
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
CTGAAACTACTATAGATAGTATATA
Found at i:34816689 original size:12 final size:12
Alignment explanation
Indices: 34816672--34816696 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34816662 GATCCATGCG
34816672 TATGTGTATTGA
1 TATGTGTATTGA
34816684 TATGTGTATTGA
1 TATGTGTATTGA
34816696 T
1 T
34816697 TACCGACAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (12 bp):
TATGTGTATTGA
Found at i:34822539 original size:43 final size:43
Alignment explanation
Indices: 34822450--34822532 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
34822440 GTTAGTGGCG
* * * *
34822450 TTTTCCCACAAACACCACTAAAGAACATGA-CATTTATCGGCAC
1 TTTTCCCACAAACGCCGCTAAAGAACATGATC-TTTAGCGACAC
34822493 TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGA
1 TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGA
34822533 TGCTTTTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (43 bp):
TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGACAC
Found at i:34822583 original size:43 final size:43
Alignment explanation
Indices: 34822502--34822583 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
34822492 CTTTTCCCAC
*
34822502 AAACGCCGCTAAAGAACATGATCTTTAGCGATGCTTTTACTGA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTACTGA
* * * * * *
34822545 AAACGCCGTTAAAGATCATGTTTTTTAGCGGCGTTTTTA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTA
34822584 TGAGAAGTGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTACTGA
Found at i:34825748 original size:54 final size:51
Alignment explanation
Indices: 34825689--34825847 Score: 153
Period size: 54 Copynumber: 3.0 Consensus size: 51
34825679 GGTCATAACA
*
34825689 GTCATTTCATCTCCTAGGGGTATAATAGTCATTTTACCCTATGGGGCTAATTCG
1 GTCATTTCATC-CCTAGGGGTA-ATTAGTCATTTTACCCTATGGGG-TAATTCG
* * *
34825743 GTCATTTTA-CCTTATGGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCG
1 GTCATTTCATCCCTA-GGGGTAATT-AGTCATTTTACCCTATG-GGGTAATTCG
*
34825796 GTCA-TTC-TACCCTATAGGGGTAATTCGATCATTTTACCCTATGGGGGTAATT
1 GTCATTTCAT-CCC--TAGGGGTAATTAG-TCATTTTACCCTAT-GGGGTAATT
34825848 TAATCATTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
52 7 0.08
53 37 0.42
54 42 0.47
55 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (51 bp):
GTCATTTCATCCCTAGGGGTAATTAGTCATTTTACCCTATGGGGTAATTCG
Found at i:34825855 original size:54 final size:53
Alignment explanation
Indices: 34825717--34825847 Score: 208
Period size: 53 Copynumber: 2.5 Consensus size: 53
34825707 GGTATAATAG
* * * *
34825717 TCATTTTACCCTATGGGGCTAATTCGGTCATTTTACCTTATGGGGTAATTCGG
1 TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTATGGGGTAATTCGA
*
34825770 TCATTTTACCCTATGAGGGTAATTCGGTCATTCTACCCTATAGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTAT-GGGGTAATTCGA
34825824 TCATTTTACCCTATGGGGGTAATT
1 TCATTTTACCCTATGGGGGTAATT
34825848 TAATCATTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 37 0.52
54 34 0.48
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTATGGGGTAATTCGA
Found at i:34825858 original size:27 final size:27
Alignment explanation
Indices: 34825716--34825847 Score: 203
Period size: 27 Copynumber: 4.9 Consensus size: 27
34825706 GGGTATAATA
*
34825716 GTCATTTTACCCTATGGGGCTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
34825743 GTCATTTTACCTTAT-GGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
34825769 GTCATTTTACCCTATGAGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
34825796 GTCATTCTACCCTATAGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
34825823 ATCATTTTACCCTATGGGGGTAATT
1 GTCATTTTACCCTATGGGGGTAATT
34825848 TAATCATTTT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 24 0.26
27 70 0.74
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTAATTCG
Found at i:34835506 original size:2 final size:2
Alignment explanation
Indices: 34835499--34835541 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
34835489 AGATAAAATT
*
34835499 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
34835541 T
1 T
34835542 CACTACATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.02, G:0.47, T:0.51
Consensus pattern (2 bp):
TG
Found at i:34837366 original size:23 final size:22
Alignment explanation
Indices: 34837314--34837371 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
34837304 AATCTTCAAA
*
34837314 GATATGAAATCTTAG---ATAT
1 GATATGTAATCTTAGAACATAT
34837333 GATATGTAATCTTAGAACATAT
1 GATATGTAATCTTAGAACATAT
*
34837355 GATTCTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
34837372 GTTTTGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.42
22 6 0.18
23 13 0.39
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGTAATCTTAGAACATAT
Found at i:34838287 original size:28 final size:28
Alignment explanation
Indices: 34838255--34838310 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
34838245 AAGCAGTTTG
34838255 ATATAGTGATTATAGGTAAAGCTTAAAA
1 ATATAGTGATTATAGGTAAAGCTTAAAA
34838283 ATATAGTGATTATAGGTAAAGCTTAAAA
1 ATATAGTGATTATAGGTAAAGCTTAAAA
34838311 GGTGCGAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (28 bp):
ATATAGTGATTATAGGTAAAGCTTAAAA
Found at i:34853269 original size:27 final size:27
Alignment explanation
Indices: 34853239--34853415 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
34853229 AAATTGTACA
* * *
34853239 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
34853266 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
34853293 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
34853320 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * * *
34853348 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
34853375 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
34853402 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
34853416 GGCTCAATAA
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.80
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:34853358 original size:82 final size:81
Alignment explanation
Indices: 34853239--34853394 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
34853229 AAATTGTACA
* * * * *
34853239 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34853303 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
34853320 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34853385 TGCGAGTTGA
65 TGCGAATTGA
34853395 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 14 0.22
82 48 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34853379 original size:55 final size:54
Alignment explanation
Indices: 34853239--34853415 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 54
34853229 AAATTGTACA
* * * *
34853239 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
* * ** *
34853293 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAT-GAATATGAT
* * * *
34853347 GGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 -GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
*
34853401 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
34853416 GGCTCAATAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
Found at i:34853406 original size:82 final size:81
Alignment explanation
Indices: 34853235--34853415 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
34853225 GATTAAATTG
* * * * * *
34853235 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34853300 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34853316 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34853380 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34853398 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34853416 GGCTCAATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34855914 original size:32 final size:32
Alignment explanation
Indices: 34855871--34855950 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
34855861 TGATTGGAAT
*
34855871 AAAGCCATCAGTAGCAGTGACATGACCAGCAC
1 AAAGCCATCAGTAGCAGTAACATGACCAGCAC
* * * * *
34855903 ACAGCCATCAGTAACGGTAATATGACCGGCAC
1 AAAGCCATCAGTAGCAGTAACATGACCAGCAC
*
34855935 AAAGCCGTCAGTAGCA
1 AAAGCCATCAGTAGCA
34855951 TCGCAGCAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.14
Consensus pattern (32 bp):
AAAGCCATCAGTAGCAGTAACATGACCAGCAC
Found at i:34856053 original size:80 final size:80
Alignment explanation
Indices: 34855905--34856057 Score: 245
Period size: 80 Copynumber: 1.9 Consensus size: 80
34855895 ACCAGCACAC
* * * *
34855905 AGCCATCAGTAACGGTAATATGACCGGCACAAAGCCGTCAGTAGCATCGCAGCAAAGTTGTCAGC
1 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAGTTGCCAAC
34855970 AACAGTATCGCAGCA
66 AACAGTATCGCAGCA
*
34855985 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGTATCGCAGCAAAGCTT-CCAA
1 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAG-TTGCCAA
34856049 CAACAGTAT
65 CAACAGTAT
34856058 TGCAACAAAG
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
80 65 0.97
81 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (80 bp):
AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAGTTGCCAAC
AACAGTATCGCAGCA
Found at i:34856296 original size:24 final size:24
Alignment explanation
Indices: 34856199--34856288 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
34856189 CCATGCTCAG
**
34856199 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
* * *
34856223 AATTAGTCATTTAAATCACAAAAA
1 AATCAGTCATTTAAATCACAGACA
*
34856247 AATCAATCATTTAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
*
34856271 AATCAGTCATTTACATCA
1 AATCAGTCATTTAAATCA
34856289 GGGACAAAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (24 bp):
AATCAGTCATTTAAATCACAGACA
Found at i:34856332 original size:26 final size:25
Alignment explanation
Indices: 34856270--34856346 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
34856260 AATCACAGAC
*
34856270 AAATCAGTCATTTACA-TCAGGGACAA
1 AAAT-AGTCATTTACACTCAGGGGC-A
34856296 AAATA-TCATTTACACTCGAGGGGCA
1 AAATAGTCATTTACACTC-AGGGGCA
* *
34856321 AAATAGTTATTTACCCTCCAGGGGCA
1 AAATAGTCATTTACACT-CAGGGGCA
34856347 TTATGATCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
24 9 0.20
25 9 0.20
26 25 0.57
27 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (25 bp):
AAATAGTCATTTACACTCAGGGGCA
Found at i:34856370 original size:27 final size:27
Alignment explanation
Indices: 34856330--34856820 Score: 444
Period size: 27 Copynumber: 18.1 Consensus size: 27
34856320 AAAATAGTTA
* * *
34856330 TTTACCCTCCAGGGGCATTATGATCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * * * *
34856357 TTTACCTTATAGGGGTATTTCAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* ** *
34856384 TTAACCCTATGGGGGTATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
34856411 TTTACCCTACATGGGCATTATGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
34856438 TTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
34856465 TTTACCTTACAGGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
** *
34856492 TTTACCCTATGGGGGCATTACGGTTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * ** **
34856519 TTTACCTTATAGGGGTTTTTTGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * *
34856546 TTTACCTTACAAGGGCATTACAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
34856573 TTTACCCTACGGGGGCATTACGGTTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* ** **
34856600 TTTACCCTATAAGGGGTTTTTTGGTCAT
1 TTTACCCTA-CAGGGGCATTACGGTCAT
* * *
34856628 TTTACCCTACAGGGGTATTACGATTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * *
34856655 TTTAACTTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
34856682 TTTACCCTAC-GGGGACGTTACGATCAT
1 TTTACCCTACAGGGG-CATTACGGTCAT
** ** * *
34856709 TTTACCCTATGGGGGTTTTTCGATCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
34856736 TTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * ** * *
34856763 TTTACCCTATAAGGGTTTTTCAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
34856790 TTTACCCTACAGGGGTATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
34856817 TTTA
1 TTTA
34856821 AAAATATTGG
Statistics
Matches: 370, Mismatches: 91, Indels: 6
0.79 0.19 0.01
Matches are distributed among these distances:
26 3 0.01
27 343 0.93
28 24 0.06
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TTTACCCTACAGGGGCATTACGGTCAT
Found at i:34856427 original size:81 final size:81
Alignment explanation
Indices: 34856330--34856820 Score: 502
Period size: 81 Copynumber: 6.0 Consensus size: 81
34856320 AAAATAGTTA
* * * * * **
34856330 TTTACCCTCCAGGGGCATTATGATCATTTTACCTTATAGGGGTATTTCAGTCATTTAACCCTATG
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
34856395 GGGGTATTACGGTCAT
66 GGGGTATTACGGTCAT
* * * * * * * *
34856411 TTTACCCTACATGGGCATTATGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCTTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
*
34856476 GGGGCATTACGGTCAT
66 GGGGTATTACGGTCAT
** * * * ** *
34856492 TTTACCCTATGGGGGCATTACGGTTATTTTACCTTATAGGGGTTTTTTGGTCATTTTACCTTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
* * *
34856557 AGGGCATTACAGTCAT
66 GGGGTATTACGGTCAT
* * * **
34856573 TTTACCCTACGGGGGCATTACGGTTATTTTACCCTATAAGGGGTTTTTTGGTCATTTTACCCTAC
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTAT-AGGGGTATTTCAGTCATTTTACCCTAC
* *
34856638 AGGGGTATTACGATTAT
65 AGGGGTATTACGGTCAT
* * * * *
34856655 TTTAACTTACAAGGGCATTACGGTCATTTTACCCTA-CGGGG-ACGTT-ACGATCATTTTACCCT
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTA-TTTCA-G-TCATTTTACCCT
** * * *
34856717 ATGGGGGTTTTTCGATCAT
63 ACAGGGGTATTACGGTCAT
* * *
34856736 TTTACCCTACAAGGGCATTACGGTCATTTTACCCTATAAGGGTTTTTCAGTCATTTTACCCTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
34856801 GGGGTATTACGGTCAT
66 GGGGTATTACGGTCAT
34856817 TTTA
1 TTTA
34856821 AAAATATTGG
Statistics
Matches: 342, Mismatches: 61, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
80 7 0.02
81 259 0.76
82 75 0.22
83 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
GGGGTATTACGGTCAT
Found at i:34864744 original size:22 final size:22
Alignment explanation
Indices: 34864719--34864760 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
34864709 CGGCACCACC
34864719 ATTTTTTTAATAAT-TTATTTTT
1 ATTTTTTTAA-AATATTATTTTT
34864741 ATTTTTTTAAAATATTATTT
1 ATTTTTTTAAAATATTATTT
34864761 ATTTAGTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTTTTTTAAAATATTATTTTT
Found at i:34865336 original size:108 final size:105
Alignment explanation
Indices: 34865148--34865409 Score: 318
Period size: 108 Copynumber: 2.5 Consensus size: 105
34865138 TTTTATGTTG
* * *
34865148 TTTTTAATTTATTTTAAAGTT-TTTTGTTAGTTACTATTATAAATTATTTGTTTAGTTTAATGTT
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAACTATTATAAATTAATTGTTTAGTTTAAGGTT
**
34865212 TATTGTGATTTGTTAGGTTATGGATAT-TAAT-TTTTATTAA
66 TATTGTGATTTGTTAGGTTAT-GA-ATGTAATCTTTTAACAA
* * ** *
34865252 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAGTTTTGTGATTAGGTTAATTGTTT-GTTTAG
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAA-CTAT-T-A-TAAATTAATTGTTTAGTTTAA
*
34865316 GGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAT
62 GGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAA
*
34865360 TTTTTAATTTATTTGT-ACGTTATTTTGTTAGTAACTATTATAAATTAATT
1 TTTTTAATTTATTT-TAAAGTTATTTTGTTAGTAACTATTATAAATTAATT
34865410 ATTAGTTAGT
Statistics
Matches: 134, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
104 29 0.22
105 12 0.09
106 5 0.04
107 9 0.07
108 67 0.50
109 12 0.09
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (105 bp):
TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAACTATTATAAATTAATTGTTTAGTTTAAGGTT
TATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAA
Found at i:34869291 original size:112 final size:108
Alignment explanation
Indices: 34869078--34869291 Score: 277
Period size: 112 Copynumber: 1.9 Consensus size: 108
34869068 ATCAAATAAA
* * * *
34869078 TAAAAAACAAATAAAATTACATTATAACAAATCACAATACACATTAAACTAAACAAATAATTTAT
1 TAAAAAACAAAAAAAATTACATTATAACAAATCACAATAAACACTAAACTAAACAAACAATTTAT
**
34869143 AACCTAATCATAAATTACTAACAAAATAACTTAAAAATAATTT
66 AACCTAATCATAAATTACTAACAAAATAACCAAAAAATAATTT
* *
34869186 TAAAACACAAAAAAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAAT
1 TAAAAAACAAAAAAAA-TTACA-TTATAACAAATCACAATAAACACTAAACT-AA-ACAAACAAT
* **
34869251 TTATAACCTAATTATAAATTACTGGGCAAAAT-ACCAAAAAA
62 TTATAACCTAATCATAAATTACT-AACAAAATAACCAAAAAA
34869292 AGCCCTATTT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
108 14 0.16
109 5 0.06
110 26 0.29
111 2 0.02
112 37 0.41
113 6 0.07
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.25
Consensus pattern (108 bp):
TAAAAAACAAAAAAAATTACATTATAACAAATCACAATAAACACTAAACTAAACAAACAATTTAT
AACCTAATCATAAATTACTAACAAAATAACCAAAAAATAATTT
Found at i:34870596 original size:105 final size:102
Alignment explanation
Indices: 34870416--34871017 Score: 668
Period size: 105 Copynumber: 5.8 Consensus size: 102
34870406 TAATTTGCCC
* * * *
34870416 TAAATTGCTAACAAAATAACTTTAAAATAAAT-AACAAAATTTGCATTCATAAAAAAATCACAAT
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCAT-AAAAAATCACAA-
34870480 AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
64 AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
34870519 AAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAATTTTACATTCATAAAAAAATCACAA
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAA-TTTACATTCAT-AAAAAATCACAA
* * *
34870584 TAAACATTAAACTAAATACAAACAATTTATAACCTAACCA
64 -AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* * * *
34870624 TAAATTACTAACAAAATGACTTTCAAATAATTTAAAAAATACAAAAAGAAATTTACGTTCATGAA
1 TAAATTACTAACAAAATAACTTT--AA-AA--T----AAT-TAAAAA-AAATTTACATTCATAAA
*
34870689 AAATCACAAAAA-ACTAAACTAAACACAAACAATTTATAACCAAATCA
55 AAATCACAAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
34870736 TAAATTACTAACAAAATAACTATAAAATAATTAAAAAAACAAAAAAAATTACATTCAT-AAAAAT
1 TAAATTACTAACAAAATAACTTTAAAATAATT------A-AAAAAAATTTACATTCATAAAAAAT
*
34870800 CAC-AAAATACTAAACTAAACACAAACAATTTATAACCTAATCA
59 CACAAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* * * * * *
34870843 TAAATTATTAA-AAAGTAACTATAAAATAATTTTAAAAAAATTTACATTAATAAAAATTCAC-AA
1 TAAATTACTAACAAAATAACTTTAAAATAA-TTAAAAAAAATTTACATTCATAAAAAATCACAAA
*
34870906 AACACTAAACTAAATACAAACAATTTATAACCTAATCA
65 AACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
34870944 TAAATTACTAACAAAATAACTTTCAAATAA-T-AAAAAAA-TAACATTCATAAAAAATCAC-AAA
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCATAAAAAATCACAAAA
34871005 ACA-TAAAACTAAA
66 ACACT-AAACTAAA
34871018 AATAAACACA
Statistics
Matches: 434, Mismatches: 40, Indels: 55
0.82 0.08 0.10
Matches are distributed among these distances:
97 1 0.00
98 31 0.07
99 7 0.02
100 17 0.04
101 56 0.13
102 15 0.03
103 31 0.07
104 6 0.01
105 81 0.19
106 21 0.05
107 57 0.13
108 15 0.03
109 6 0.01
110 3 0.01
112 52 0.12
113 3 0.01
114 14 0.03
115 15 0.03
116 3 0.01
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.25
Consensus pattern (102 bp):
TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCATAAAAAATCACAAAA
ACACTAAACTAAACACAAACAATTTATAACCTAATCA
Done.