Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 123 of 199
Found at i:35256559 original size:88 final size:89
Alignment explanation
Indices: 35256400--35256658 Score: 251
Period size: 90 Copynumber: 2.9 Consensus size: 89
35256390 GGTGACGACC
*
35256400 ATCAAACTATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAGGGATGGCTTCAGCTATCGA
1 ATCAAACTATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAGGGATGGCTTCAGCTATCAA
35256465 TCTATG-AAAGGGATGCTTTGGGT
66 TCTATGAAAAGGGATGCTTTGGGT
* * * * * *
35256488 ATCAATCTATGAAAAGGGATGGCT-TCGACTATCGATCTATGAAAAGGGATGGCTTCGGCCT-TC
1 ATCAAACTATGAAAAGGGATGG-TGACGACCATCAAACTATGAAAAGGGATGGCTTCAG-CTATC
* * ***
35256551 AAAT-TATGAAAAGGGATGGTGATGACC
64 -AATCTATGAAAAGGGATGCT-TTGGGT
* * * * * **
35256578 ATCGAA-TCATGAAAAGGGATGGTGATGACCATCAAATTATGAAAAAGGATAGCTTTGGCTATCA
1 ATCAAACT-ATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAGGGATGGCTTCAGCTATC-
35256642 AAT-TATGAAAAGGGATG
64 AATCTATGAAAAGGGATG
35256659 TGCCAATCAT
Statistics
Matches: 140, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
88 56 0.40
89 19 0.14
90 65 0.46
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.25
Consensus pattern (89 bp):
ATCAAACTATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAGGGATGGCTTCAGCTATCAA
TCTATGAAAAGGGATGCTTTGGGT
Found at i:35267696 original size:26 final size:27
Alignment explanation
Indices: 35267629--35267887 Score: 303
Period size: 27 Copynumber: 9.7 Consensus size: 27
35267619 CCTTTAGGTT
*
35267629 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
35267656 GTAAAATTATCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
35267683 GT-AAATTACTGAAATACCCTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
35267709 GTAAAA-TATCGAAGTATCCC-CGATGG
1 GTAAAATTACCGAAATA-CCCTCGATGG
* * * * *
35267735 GTAAAATTATCGAAATATCCTCCAAGA
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
35267762 GTAAAATTACAGAAATAACCACGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
35267789 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
35267816 GTAAAATTACCGAAATACCCCCTATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
35267843 GT-AAATTACCAAAATACACCT-GATGG
1 GTAAAATTACCGAAATAC-CCTCGATGG
35267869 GTAAAATTACCGAAATACC
1 GTAAAATTACCGAAATACC
35267888 TCCCAAAGGG
Statistics
Matches: 194, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
26 64 0.33
27 130 0.67
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGATGG
Found at i:35267699 original size:53 final size:53
Alignment explanation
Indices: 35267629--35267887 Score: 310
Period size: 53 Copynumber: 4.9 Consensus size: 53
35267619 CCTTTAGGTT
*
35267629 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCC-CGATGG
** * * *
35267683 GT-AAATTACTGAAATACCCTCGAAGGGTAAAA-TATCGAAGTATCCCCGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATA-CCCCGATGG
* * * * * * * *
35267735 GTAAAATTATCGAAATATCCTCCAAGAGTAAAATTACAGAAATAACCACGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAAT-ACCCCGATGG
*
35267789 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCTATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATA-CCCCGATGG
35267843 GT-AAATTACCAAAATACACCT-GATGGGTAAAATTACCGAAATACC
1 GTAAAATTACCAAAATAC-CCTCGATGGGTAAAATTACCGAAATACC
35267888 TCCCAAAGGG
Statistics
Matches: 177, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
52 19 0.11
53 93 0.53
54 64 0.36
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (53 bp):
GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCCGATGG
Found at i:35268790 original size:17 final size:17
Alignment explanation
Indices: 35268765--35268825 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
35268755 TTTTGTACAT
*
35268765 GTTTTAAATGGAAAAAA
1 GTTTGAAATGGAAAAAA
** *
35268782 GTTTGAAATTTCAAGAAAG
1 GTTTGAAA-TGGAA-AAAA
*
35268801 GTTTTAAATGGAAAAAA
1 GTTTGAAATGGAAAAAA
35268818 GTTTGAAA
1 GTTTGAAA
35268826 GTTTTGTACA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
17 17 0.52
18 6 0.18
19 10 0.30
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.31
Consensus pattern (17 bp):
GTTTGAAATGGAAAAAA
Found at i:35268818 original size:18 final size:18
Alignment explanation
Indices: 35268765--35268818 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
35268755 TTTTGTACAT
35268765 GTTTTAAATGGAAAAAA-
1 GTTTTAAATGGAAAAAAG
* ** *
35268782 GTTTGAAATTTCAAGAAAG
1 GTTTTAAA-TGGAAAAAAG
35268801 GTTTTAAATGGAAAAAAG
1 GTTTTAAATGGAAAAAAG
35268819 TTTGAAAGTT
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
17 7 0.26
18 13 0.48
19 7 0.26
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.30
Consensus pattern (18 bp):
GTTTTAAATGGAAAAAAG
Found at i:35273189 original size:46 final size:46
Alignment explanation
Indices: 35273079--35273657 Score: 435
Period size: 47 Copynumber: 12.8 Consensus size: 46
35273069 GAAATGATAG
*
35273079 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATG-GTGA
35273126 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGGTGA
* *
35273172 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
*
35273219 TAAGGCCTAAA--GCCGATGTGATGAATGTGAAAGTGTATATAGTGA
1 TAAGGCC-AAATGGCCGATGTGATGAATGTGAAAGTGTATATGGTGA
35273264 TAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATG-GTGA
* * * * *
35273310 TAAGG-C-AAT----GATATGAATGAAAT-T-ATATTG-ATAAGGCCTAA
1 TAAGGCCAAATGGCCGATGTG-ATG-AATGTGAAAGTGTATATGG--TGA
* * * * *
35273351 T-A-GCC-GAT-G-TGATGAATG-TGAAAGTGTATATAG-GTGATAAGGCCTAA
1 TAAGGCCAAATGGCCGATG--TGATGAATGTG-A-A-AGTGT-ATATGG--TGA
* * * * *
35273398 T-A-GCC-GAT-G-TGATG-AATG--TGA--AAGTGTATATATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
* *
35273435 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
* * * *
35273482 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
* *
35273529 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
* *
35273576 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GGTGA
* * * * * * *
35273622 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG
35273658 CATAAATGTG
Statistics
Matches: 459, Mismatches: 38, Indels: 70
0.81 0.07 0.12
Matches are distributed among these distances:
37 3 0.01
38 6 0.01
39 9 0.02
40 10 0.02
41 15 0.03
42 14 0.03
43 9 0.02
44 3 0.01
45 49 0.11
46 122 0.27
47 217 0.47
48 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (46 bp):
TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGGTGA
Found at i:35273667 original size:47 final size:47
Alignment explanation
Indices: 35273333--35273672 Score: 522
Period size: 47 Copynumber: 7.3 Consensus size: 47
35273323 TGAATGAAAT
*
35273333 TATAT-TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
35273379 TATAGGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
35273426 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
35273473 TATAGGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
35273520 TATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
35273567 TATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * *
35273613 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
35273660 TAAATGTGATAAG
1 TATATGTGATAAG
35273673 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
46 44 0.16
47 230 0.84
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:35273847 original size:37 final size:37
Alignment explanation
Indices: 35273791--35273869 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35273781 CCGAGCTCTA
* * *
35273791 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35273828 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35273865 AAGAC
1 AAGAC
35273870 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35275771 original size:43 final size:43
Alignment explanation
Indices: 35275724--35275826 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
35275714 TTGGTTTTCA
35275724 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
35275767 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
35275810 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
35275827 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:35275843 original size:29 final size:29
Alignment explanation
Indices: 35275808--35275881 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35275798 GTTGTGAGAT
* *
35275808 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
35275837 TGGCACTAAGTGTGCTAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35275866 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
35275882 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35276249 original size:40 final size:40
Alignment explanation
Indices: 35276192--35276308 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 40
35276182 TCGAATGATG
* *
35276192 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-CATA
* *
35276232 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGACATA
* * * *
35276272 TCCGTG-CTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCG-GACTAAGTCCCGAAGAGCATTCGTGCTAGTGAC
35276309 GTGTATTCGG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 49 0.77
41 8 0.12
42 7 0.11
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGACATA
Found at i:35279622 original size:47 final size:47
Alignment explanation
Indices: 35279563--35280129 Score: 845
Period size: 47 Copynumber: 12.1 Consensus size: 47
35279553 GAAATGACAG
* *
35279563 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35279610 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35279657 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAG-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GTGTGA
*
35279704 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35279751 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
35279798 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATAG-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GTGTGA
* *
35279845 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35279892 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAG-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GTGTGA
* * *
35279939 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35279986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
35280033 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * * **
35280079 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
35280126 TAAG
1 TAAG
35280130 TCCGAAGGGC
Statistics
Matches: 486, Mismatches: 27, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
46 41 0.08
47 443 0.91
48 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:35279747 original size:23 final size:23
Alignment explanation
Indices: 35279720--35279794 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
35279710 CTAATAGCCG
35279720 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* ***
35279743 ATGTG-TGATAAG-GCCAAA-TGGCCG
1 ATGTGATGA-ATGTG--AAAGT-GTAT
35279767 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
35279790 ATGTG
1 ATGTG
35279795 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 17 0.46
24 12 0.32
25 4 0.11
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:35280303 original size:37 final size:37
Alignment explanation
Indices: 35280247--35280325 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
35280237 CCGAGCTCTA
* * * * * *
35280247 AAGACCTGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
*
35280284 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
35280321 AAGAC
1 AAGAC
35280326 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:35305387 original size:64 final size:64
Alignment explanation
Indices: 35305286--35305413 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
35305276 CGACAATTGG
* *
35305286 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTTAATTCCCAAAACTATTGACAA
1 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
* * *
35305350 AAACTCAATCTTAGTCACTTAATCTGAGTTACTTACAATAGTCAATTCCCAAAACTATCGACAA
1 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
35305414 CCTTACCTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (64 bp):
AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
Found at i:35312754 original size:64 final size:64
Alignment explanation
Indices: 35312677--35312801 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
35312667 TGACAATTGG
35312677 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACGA
1 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACGA
* *
35312741 AAACTCAATCTCAGTCACTTAATTTGAATTACTTACAACAGTCAATTCCCAAAACTATTGA
1 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGA
35312802 AACCTTACCT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (64 bp):
AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACGA
Found at i:35316433 original size:52 final size:52
Alignment explanation
Indices: 35316371--35316471 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
35316361 CATGCACATA
* *
35316371 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGTTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
35316423 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
35316472 CTATTCCGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
Found at i:35322926 original size:52 final size:52
Alignment explanation
Indices: 35322865--35322965 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
35322855 CATGCACATA
35322865 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
35322917 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTA
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTA
35322966 CTTTTCCTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
Found at i:35343653 original size:39 final size:40
Alignment explanation
Indices: 35343610--35343775 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
35343600 CTCGTTCAAG
* * * *
35343610 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
35343649 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
35343689 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
35343729 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
35343769 TGCCTTC
1 TGCCTTC
35343776 AGATCTTAGT
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.24
40 79 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:35343761 original size:80 final size:80
Alignment explanation
Indices: 35343645--35343830 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
35343635 AGTAACTCAT
* * * *
35343645 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-AGATCTTAACCCG
*
35343709 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
35343724 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCAGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCAGATCTTAACCC
35343788 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
35343805 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
35343831 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 10 0.11
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCAGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:35343790 original size:40 final size:40
Alignment explanation
Indices: 35343647--35343775 Score: 197
Period size: 40 Copynumber: 3.2 Consensus size: 40
35343637 TAACTCATAC
* *
35343647 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
35343687 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
35343727 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
35343767 AATGCCTTC
1 AATGCCTTC
35343776 AGATCTTAGT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:35343824 original size:40 final size:40
Alignment explanation
Indices: 35343650--35343830 Score: 154
Period size: 40 Copynumber: 4.5 Consensus size: 40
35343640 CTCATACAAT
* * * * *
35343650 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGA-ATTAATAACTAGCACAAAG
* * * *
35343690 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * *
35343730 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * * *
35343770 GCCTTC-AGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGAAT-TAATAAC-TAGCACAAAG
35343810 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
35343831 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
39 7 0.06
40 102 0.86
41 10 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
Found at i:35361681 original size:39 final size:40
Alignment explanation
Indices: 35361638--35361805 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
35361628 CTCGTTCAAG
* * * *
35361638 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
35361677 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
35361717 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
35361757 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
35361797 TGCCTTCGG
1 TGCCTTCGG
35361806 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:35361789 original size:80 final size:80
Alignment explanation
Indices: 35361673--35361858 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
35361663 AGTAACTCAT
* * *
35361673 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
35361737 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
35361752 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
35361816 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
35361833 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
35361859 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:35361818 original size:40 final size:40
Alignment explanation
Indices: 35361675--35361858 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
35361665 TAACTCATAC
* *
35361675 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
35361715 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
35361755 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
35361795 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
35361836 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
35361859 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:35365017 original size:44 final size:43
Alignment explanation
Indices: 35364960--35365081 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 43
35364950 TCCTTTGTGT
*
35364960 ATTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGA
1 ATTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGT-A
* *
35365005 TTTACGTGTAAGACC-CTGACTGGGACAG-TGGCATCGATATGTA
1 ATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTA
* * *
35365048 ATTACATGTAAGACCACGTCTCGGACGTTAGCAT
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
35365082 TGTATGAGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 33 0.51
45 4 0.06
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTA
Found at i:35372834 original size:132 final size:132
Alignment explanation
Indices: 35372597--35373551 Score: 1694
Period size: 132 Copynumber: 7.2 Consensus size: 132
35372587 TCGTAAATAA
35372597 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
35372662 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCGCTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35372727 AG
131 AG
* *
35372729 GTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
35372794 CTATTCCATTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35372859 AG
131 AG
* *
35372861 GTAAAATCCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
35372926 CTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35372991 AG
131 AG
*
35372993 GTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
35373058 CTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35373123 AG
131 AG
35373125 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
35373190 CTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTGCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35373255 AG
131 AG
* *
35373257 GTAAAATCTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
35373322 CTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35373387 AG
131 AG
*
35373389 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTTAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* * * * *
35373454 CTATTCCACTGTTGTTCAAGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAGCCACAAGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
35373519 AG
131 AG
* *
35373521 GTAAAATCCGTCATCTTCGATCTGCTTCACT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACT
35373552 GTCAATGCAG
Statistics
Matches: 790, Mismatches: 33, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 790 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
AG
Found at i:35373330 original size:44 final size:44
Alignment explanation
Indices: 35372873--35373463 Score: 138
Period size: 44 Copynumber: 13.4 Consensus size: 44
35372863 AAAATCCGCC
* * * *
35372873 ATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGACCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* **
35372917 ATCTTCAATCTATTCCACTGTTG-TTCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTT-AGGGAGA-TAAG-A-T-CTGAA
* * * ** * * **
35372961 -GCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
35373005 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* **
35373049 ATCTTCAATCTATTCCACTGTTG-TTCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTT-AGGGAGA-TAAG-A-T-CTGAA
* * ** * * * **
35373093 -GCTTCAATGTACTCCACTGTAAC--CACAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCAC--T-ACTGCTTAGGGAGATAAGATCTGAA
* *
35373137 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** **
35373181 ATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAG-A-T-CTGAA
* * * * ** * * **
35373225 -GCTGCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGTC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
35373269 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* ** **
35373313 ATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAG-A-T-CTGAA
* * * ** * * * **
35373357 -GCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGATAAGATCTGAA
* *
35373401 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
* *
35373445 ATCTTTAATCTATTCCACT
1 ATCTTCAATCTACTCCACT
35373464 GTTGTTCAAG
Statistics
Matches: 382, Mismatches: 111, Indels: 108
0.64 0.18 0.18
Matches are distributed among these distances:
42 15 0.04
43 79 0.21
44 208 0.54
45 65 0.17
46 15 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAA
Found at i:35384745 original size:21 final size:22
Alignment explanation
Indices: 35384714--35384755 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
35384704 TGAACCGATT
35384714 TTTTCTATTTTTA-AAATATTTA
1 TTTTCTATTTTTATAAA-ATTTA
35384736 TTTT-TATTTTTATAAAATTT
1 TTTTCTATTTTTATAAAATTT
35384756 TATTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTCTATTTTTATAAAATTTA
Found at i:35384757 original size:22 final size:23
Alignment explanation
Indices: 35384721--35384768 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
35384711 ATTTTTTCTA
35384721 TTTTTAAAATATTTATT-TTTAT
1 TTTTTAAAATATTTATTATTTAT
35384743 TTTTATAAAAT-TTTATTAATTTAT
1 TTTT-TAAAATATTTATT-ATTTAT
35384767 TT
1 TT
35384769 GACTGAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 10 0.43
23 6 0.26
24 7 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTTAAAATATTTATTATTTAT
Found at i:35385992 original size:6 final size:6
Alignment explanation
Indices: 35385983--35386047 Score: 121
Period size: 6 Copynumber: 10.8 Consensus size: 6
35385973 TCTTCTGAAG
35385983 ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA
1 ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA ATGGCA
*
35386031 ATGGCA ATGGCC ATGGC
1 ATGGCA ATGGCA ATGGC
35386048 GCTAGACGTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.31, C:0.18, G:0.34, T:0.17
Consensus pattern (6 bp):
ATGGCA
Found at i:35390831 original size:7 final size:7
Alignment explanation
Indices: 35390819--35390849 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
35390809 ATTTTGATAG
35390819 TTTAATT
1 TTTAATT
35390826 TTTAATT
1 TTTAATT
35390833 TTTAATT
1 TTTAATT
35390840 TTTAATT
1 TTTAATT
35390847 TTT
1 TTT
35390850 GTTTGGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:35397322 original size:264 final size:264
Alignment explanation
Indices: 35396831--35397327 Score: 796
Period size: 264 Copynumber: 1.9 Consensus size: 264
35396821 AGTACATACC
* *
35396831 AATTCATATTATACTCAAATTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
1 AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
* *
35396896 TCACAAGTTATCAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTCATACCTTAAACAA
66 TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
* *
35396961 GCTAATTGCAAAAATCTATATATAACATTTTAAATTTAAATCGTGAAAGCACAAACCAAAATAGC
131 GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
** *
35397026 TACTCATCTATGACCCTCGCCTTTCTTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
196 TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
35397091 TGGT
261 TGGT
* *
35397095 AATTCTTATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCATATCATCACATTTT
1 AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
* * ** * *
35397160 TCACAAGTTATAAACTATTTCTTACTTACCTATTTTTGAAACAAATAAGTTAATGCTTTAAACAA
66 TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
* * *
35397225 GCTAATTGCAACAATCCATATATAATATTTTAAATTTAAATCATGAAAGCACAGACCAAAATAGC
131 GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
* *
35397290 TACTCATCTACAACTCTCTCCTTTCCTTTATCTCGAGA
196 TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGA
35397328 CGGCCCGACA
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
264 211 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (264 bp):
AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
TGGT
Found at i:35404174 original size:265 final size:265
Alignment explanation
Indices: 35403701--35404229 Score: 918
Period size: 265 Copynumber: 2.0 Consensus size: 265
35403691 AACTCTATTG
*
35403701 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTATCAAT
1 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCATAAACTATCAAT
*
35403766 TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTATTACATAGAC
66 TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTACTACATAGAC
*
35403831 AAAACCCAACATAAACTTACCTGTATAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAATGTG
131 AAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAATGTG
* *
35403896 TAATCCACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGT
196 TAATCCACTATCAGTTAAACAGTAGACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGA
35403961 AACAA
261 AACAA
* *
35403966 TTTAAATTTTGTGTCTTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCATAAACTAGT-AG
1 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCATAAACTA-TCAA
* *
35404030 TTTAAAATAAGTAAGCAAAAACCCAATTAACAAATTAAACAAACTTAAAAG-CCTTACTACATAG
65 TTTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTT-AAAGTCCTTACTACATAG
*
35404094 ACAAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTG
129 ACAAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAATG
* *
35404159 TGTAATCCACTATCAGTTAAACAGTAGACAACATGCAGTAACAGTCTGGGCTTGAGCCTTATTCA
194 TGTAATCCACTATCAGTTAAACAGTAGACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCA
35404224 GAAACA
259 GAAACA
35404230 GTACAGTGTG
Statistics
Matches: 250, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
265 245 0.98
266 5 0.02
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (265 bp):
TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCATAAACTATCAAT
TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTACTACATAGAC
AAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAATGTG
TAATCCACTATCAGTTAAACAGTAGACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGA
AACAA
Found at i:35404257 original size:27 final size:28
Alignment explanation
Indices: 35404227--35404284 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
35404217 TTATTCAGAA
35404227 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* *
35404254 ACAGTAATAGTGTGGGCCTTAGCCCGAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
35404282 ACA
1 ACA
35404285 ATAATAGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:35404273 original size:28 final size:28
Alignment explanation
Indices: 35404234--35404292 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
35404224 GAAACAGTAC
*
35404234 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAATAAT
*
35404262 AGTGTGGGCCTTAGCCCGATACAATAAT
1 AGTGTGGGCCTTAGCCCAATACAATAAT
35404290 AGT
1 AGT
35404293 ATAGCACAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAATAAT
Found at i:35404430 original size:26 final size:26
Alignment explanation
Indices: 35404395--35404501 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
35404385 AACACACCAA
*
35404395 TATCGCAGCAAAGCTACCAGTAATAG
1 TATCGCAGCAAAGCTACCAGTAACAG
* *
35404421 TATCGTAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
* *
35404447 TATCGCAGCAAAGCTGCCAATAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
35404473 TATCGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
35404499 TAT
1 TAT
35404502 ACTTCCTTCT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAACAG
Found at i:35404696 original size:27 final size:27
Alignment explanation
Indices: 35404666--35404779 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
35404656 GGTATAACAA
*
35404666 TCATTTAACCCTAT-GAGGGTATTTCGG
1 TCATTTTACCCTATAG-GGGTATTTCGG
*
35404693 TCATTTTACCCTATAGAGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* * *
35404720 TCATTTTATCCTATATGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGG
*
35404747 TCATTTTACCTTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
35404774 TCATTT
1 TCATTT
35404780 ATTGACCTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 75 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGG
Found at i:35405009 original size:19 final size:20
Alignment explanation
Indices: 35404990--35405027 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
35404980 CATTGAGCCC
*
35404990 ACATGGCCCATTTTGTCCCA
1 ACATGGCCCATTATGTCCCA
*
35405010 ACGTGGCCCATTATGTCC
1 ACATGGCCCATTATGTCC
35405028 TAAGCCCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.29
Consensus pattern (20 bp):
ACATGGCCCATTATGTCCCA
Found at i:35412161 original size:28 final size:28
Alignment explanation
Indices: 35412103--35412164 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
35412093 CTATTTAGTA
*
35412103 ACAGT-ACAGTGTGAGCCTTAGCCCGAC
1 ACAGTAACAGTGTGAGCCTTAGCCCAAC
* *
35412130 ACAGTAACAGTGT-AGGCCTTAGCTCAAT
1 ACAGTAACAGTGTGA-GCCTTAGCCCAAC
35412158 ACAGTAA
1 ACAGTAA
35412165 TAGTACAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (28 bp):
ACAGTAACAGTGTGAGCCTTAGCCCAAC
Found at i:35412494 original size:27 final size:27
Alignment explanation
Indices: 35412462--35412604 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
35412452 GGGGTATAAT
*
35412462 AGTCATTTAACCCTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
35412489 AATCATCTTACCCTAT-GGGGATATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTC
**
35412516 AACCATTTTACCCTAT-GGAGGTATTTC
1 AGTCATTTTACCCTATAGG-GGTATTTC
* * *
35412543 GGTCATTTTACCCTATATGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTC
* * *
35412570 GGTCATTTTACCTTATAAGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
35412597 AGTCATTT
1 AGTCATTT
35412605 ATTGACCTCT
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.04
27 92 0.93
28 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTATTTC
Found at i:35414722 original size:35 final size:35
Alignment explanation
Indices: 35414674--35414743 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
35414664 CTTCAAAAAG
35414674 TTGATTTTACGCTATTCATATGCCCTTGCCAAATT
1 TTGATTTTACGCTATTCATATGCCCTTGCCAAATT
*
35414709 TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
1 TTGATTTTACGCTATTCATATGCCCTTGCCAAATT
35414744 GGGCTTCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (35 bp):
TTGATTTTACGCTATTCATATGCCCTTGCCAAATT
Found at i:35423526 original size:71 final size:71
Alignment explanation
Indices: 35423451--35423608 Score: 174
Period size: 71 Copynumber: 2.2 Consensus size: 71
35423441 GTTTGAATTA
* * *
35423451 GATGTCGTGACATGGGCTTCTGGATGTCGTGACATTAATGGTTGTATGCTCCCCC-CTTTAGTTC
1 GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTC-TTAGTTC
*
35423515 GAAGTTG
65 AAAGTTG
* * * * * * * *
35423522 GATGTTGCGACTTTGGCTTATGGGTTTCGTGGCATTGATGGATGTATGCTCCCCCTCTTGGTTCA
1 GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTCTTAGTTCA
35423587 AAGTTG
66 AAGTTG
* *
35423593 GATGTCACAACATGGG
1 GATGTCGCGACATGGG
35423609 ATGGTGGTTT
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
71 68 0.99
72 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.35
Consensus pattern (71 bp):
GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTCTTAGTTCA
AAGTTG
Found at i:35427648 original size:31 final size:31
Alignment explanation
Indices: 35427605--35427683 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
35427595 AGCAAAATAA
* * * *
35427605 AGAAGAAAAGAGAATGAGAAGGGAAAAAAAT
1 AGAATAAAAGAGAAGGAGAAAGGAAAAAAAG
* *
35427636 AGAATAGAAGAGAAGGGGAAAGGAAAAAAAG
1 AGAATAAAAGAGAAGGAGAAAGGAAAAAAAG
35427667 AGAATAAAAGAGAAGGA
1 AGAATAAAAGAGAAGGA
35427684 AAGAAGAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.05
Consensus pattern (31 bp):
AGAATAAAAGAGAAGGAGAAAGGAAAAAAAG
Found at i:35430720 original size:28 final size:28
Alignment explanation
Indices: 35430682--35430762 Score: 135
Period size: 28 Copynumber: 2.9 Consensus size: 28
35430672 ATATACATAC
35430682 AAAATACAAACTTTGTAATATAAATGCA
1 AAAATACAAACTTTGTAATATAAATGCA
* *
35430710 AAAATATAAACTTTGAAATATAAATGCA
1 AAAATACAAACTTTGTAATATAAATGCA
*
35430738 AAAATACAAACGTTGTAATATAAAT
1 AAAATACAAACTTTGTAATATAAAT
35430763 TAGATTCATT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATACAAACTTTGTAATATAAATGCA
Found at i:35433754 original size:30 final size:31
Alignment explanation
Indices: 35433720--35433777 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
35433710 GAACCATACT
35433720 TTGGTGTC-ACTTTCCCATGGGCACCACTCA
1 TTGGTGTCGACTTTCCCATGGGCACCACTCA
* *
35433750 TTGGTGTCGCCTTTCTCATGGGCACCAC
1 TTGGTGTCGACTTTCCCATGGGCACCAC
35433778 CACCAAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.14, C:0.33, G:0.22, T:0.31
Consensus pattern (31 bp):
TTGGTGTCGACTTTCCCATGGGCACCACTCA
Found at i:35435846 original size:26 final size:26
Alignment explanation
Indices: 35435817--35435870 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
35435807 ATAATCGTAA
*
35435817 TGCCCATAGAGGGTAAATGACTATTT
1 TGCCCATAGAGGGTAAATGACTAATT
* * *
35435843 TGCCCCTCGTGGGTAAATGACTAATT
1 TGCCCATAGAGGGTAAATGACTAATT
35435869 TG
1 TG
35435871 TGCTATGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (26 bp):
TGCCCATAGAGGGTAAATGACTAATT
Found at i:35444467 original size:37 final size:37
Alignment explanation
Indices: 35444424--35444532 Score: 125
Period size: 35 Copynumber: 3.0 Consensus size: 37
35444414 ACGCCACTCA
*
35444424 TCTTTCAATTAACATCCTTCCACAACACCGAAACTTC
1 TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
* * *
35444461 TCTTTCAATTAAAAT-CTTGCCACAACGCTGATAC-T-
1 TCTTTCAATTAACATCCTT-CCACAACACCGATACTTC
* **
35444496 TCTTTCAATTAACGTCCCGCCACAACACCGATACTTC
1 TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
35444533 ATGTAACACC
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 26 0.45
36 6 0.10
37 26 0.45
ACGTcount: A:0.30, C:0.33, G:0.06, T:0.30
Consensus pattern (37 bp):
TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
Found at i:35444799 original size:43 final size:43
Alignment explanation
Indices: 35444772--35444877 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
35444762 CTTTTTTTAC
* * * *
35444772 AAACGCCGCTAAAAAGCATGACCTTTAGAGACGATTTTCCCAA
1 AAACGCAGCTAAAAAACATGACCTTTAGCGGCGATTTTCCCAA
* *
35444815 AAACGCAGCTAAAAAACATGACCTTTAGCGGC-ACTTCTCTCAA
1 AAACGCAGCTAAAAAACATGACCTTTAGCGGCGA-TTTTCCCAA
*
35444858 AAACGCAGCTAAAGAACATG
1 AAACGCAGCTAAAAAACATG
35444878 TGCTAAAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 54 0.98
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (43 bp):
AAACGCAGCTAAAAAACATGACCTTTAGCGGCGATTTTCCCAA
Found at i:35469862 original size:443 final size:446
Alignment explanation
Indices: 35468742--35470243 Score: 2698
Period size: 443 Copynumber: 3.4 Consensus size: 446
35468732 NNNNNNNNNN
35468742 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
1 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
35468807 CAAGTGTTTGGTGCCATTGCCGAGGAGG----GCTACTAAATTGATTTTAATTTTTGAGTTTTAT
66 CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
35468868 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
131 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
35468933 TCTTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
196 TCTTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
35468998 GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
261 GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
35469063 GATCTATATTCGTTTAAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGT
326 GA-CTATATTCGTTTAAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGT
*
35469128 ACTCACCTACTTCGTTGTAAAAACTATATTAGAACCTGACTCGTGTACTTGCAGACAC
390 ACTCACCTACTTCGTTGT-AAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
35469186 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
1 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
*
35469251 CAAATGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
66 CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
35469316 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
131 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
* * * * *
35469381 TCTTTTTAGTTTCAGTGTATGTCTTGCAGTATTGGAACAATTATAGAGCGAGTCACTGATCTAGA
196 TCTTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
* *
35469446 GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTA
261 GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
* * *
35469511 GA-TATATTCATTTAAGTTCAAGTTAAGTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTA
326 GACTATATTCGTTTAAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTA
* *
35469575 CTCACCTACTTCGTTGT-AAACTATATTACAACCTGACTCGTATACTTGCAGACAA
391 CTCACCTACTTCGTTGTAAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
35469630 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGC-GT
1 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
35469694 CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
66 CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
35469759 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
131 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
*
35469824 TCTTTTTAGTTCCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
196 TCTTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
* *
35469889 GAGAATAATCTCTAGGAATCGTCAGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
261 GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
*
35469954 GATCTATATTCGTTTAAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGT
326 GA-CTATATTCGTTTAAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGT
*
35470019 ACTCACCTGCTTCGTTGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
390 ACTCACCTACTTCGTTGT-AAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
*
35470077 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACT-TGGATGTTAGTATGTTCGGAGGC-GT
1 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
* * *
35470140 CAAGTGTTTGGAGCCATTGCCGAGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTAT
66 CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
35470205 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTT
131 AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTT
35470244 GCCAAAACCA
Statistics
Matches: 1014, Mismatches: 36, Indels: 14
0.95 0.03 0.01
Matches are distributed among these distances:
443 253 0.25
444 189 0.19
445 74 0.07
446 201 0.20
447 74 0.07
448 223 0.22
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (446 bp):
CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGT
CAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTAT
AGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT
TCTTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGA
GAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTA
GACTATATTCGTTTAAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTA
CTCACCTACTTCGTTGTAAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
Found at i:35472355 original size:437 final size:437
Alignment explanation
Indices: 35471502--35472785 Score: 2018
Period size: 437 Copynumber: 2.9 Consensus size: 437
35471492 CGTTTAGTTA
*
35471502 AAGTTAAAGTTAATTTAGTA-TAGCCTTCCTTGGGTTTGAT-CTTGGAG--CTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTT-ATCCTTGGAGTACTCACCTACTTCGT
35471563 TGTAAAAACTATATTACAACCTGACTC-TATAC-TGCAGACACCACCTCAATTCCATTCATTTAG
65 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35471626 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
130 TTGCAATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAAGT-TTGGTG-CATTGCCGA
* *
35471691 GGAGCAACGCTACTTGAAATTGATTTTAATTTTTAGTTTTATAGGAT-A-TGGGAAATTTATAAA
192 GGAGCAACGCTAC-T-AAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
*
35471754 TTGTAGATACAATTTTTTATTGTTACTGAACATCTTTTA-TTTCTTTTTAGTTTCAGTGTATGGC
255 TTGTAGATACAATTTTTTATTGTTACT-AACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
*
35471818 TCGTAGTAGTGGAACAGTTATAGGAGCGAGTCACTGATCAAAGAGAATAATCTGTAGGAATCGTC
319 TCGTAGTAGTGGAACAGTTATA-GAGCGAGTCACTGATCAGAGAGAATAATCTGTAGGAATCGTC
35471883 AATAGCCATAGCAGATGCAAAACCAATCACTGTACTAATTAGATATATATTCG-TT
383 AATAGCCATAGCAGATGC-AAACCAATCACTGTACTAATTAGATATATATTCGTTT
35471938 AAGTTCAA-TTAATTTAGTATTAGCCTTCCTTGGGTTTATCCTTGGAGTACTCACCTACTTCGTT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTATCCTTGGAGTACTCACCTACTTCGTT
*
35472002 GTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
66 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
35472067 TGCAATATTTACACTCTGGAT-TTAGTATG-CGGAGGCGGTCAAGTTTGGTGCATTGCCGAGGAG
131 TGCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTTTGGTGCATTGCCGAGGA-
35472130 GCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGT
195 GCAACGCTACTAAATTGATTTTAA-TTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGT
* * * * * *
35472195 GGATACAATTTTTTATTGGTACTAACATCTTTTATTTTCTTTTAAGTTTCAGTGTATGTCTTGCA
259 AGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTA
*
35472260 ATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCCAATA
324 GTAGTGGAACAGTTATAGAGCGAGTCACTGATC-AGAGAGAATAATCTGTAGGAATCGT-CAATA
*
35472325 GCCATAGCAGATGCAAA-CAATCATCTGTACTAATTAGATCTATATTCGTTT
387 GCCATAGCAGATGCAAACCAATCA-CTGTACTAATTAGATATATATTCGTTT
* *
35472376 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTGATCC-TGGAGTACTCACCTACCTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTATCCTTGGAGTACTCACCTA-CTTCGT
35472440 TGT-AAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCA-TTAG
65 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35472503 TTGCAATATTTACACTCTGGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCATTGCCG
130 TTGCAATATTTACACTCT-GGATGTTAGTATG-TCGGAGGCGGTCAA--GTTTGGTGCATTGCCG
35472568 AGGACGC-ACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAA-TTATAAA
191 AGGA-GCAACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
*
35472631 TTGTAGATACAATTTTTTATTGTTACTAACATC-TTTATTTTCTTTTTAGTTTCAGTGTAGGACT
255 TTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACT
* * * *
35472695 CGTAGT-GTGGAATAATTATAAAGCGAGTCA-TGATCAGAGAGAATAATCTATAGGAATCGTCAA
320 CGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCAGAGAGAATAATCTGTAGGAATCGTCAA
*
35472758 TAGCCATAGCAGTTGCAAAACCAATCAC
385 TAGCCATAGCAGATGC-AAACCAATCAC
35472786 CTGTTGCAAG
Statistics
Matches: 792, Mismatches: 31, Indels: 50
0.91 0.04 0.06
Matches are distributed among these distances:
434 13 0.02
435 61 0.08
436 109 0.14
437 179 0.23
438 164 0.21
439 92 0.12
440 91 0.11
441 41 0.05
442 21 0.03
443 21 0.03
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (437 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTATCCTTGGAGTACTCACCTACTTCGTT
GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
TGCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTTTGGTGCATTGCCGAGGAG
CAACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
ATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAGT
AGTGGAACAGTTATAGAGCGAGTCACTGATCAGAGAGAATAATCTGTAGGAATCGTCAATAGCCA
TAGCAGATGCAAACCAATCACTGTACTAATTAGATATATATTCGTTT
Found at i:35477964 original size:447 final size:446
Alignment explanation
Indices: 35476824--35478138 Score: 2307
Period size: 447 Copynumber: 3.0 Consensus size: 446
35476814 GTTTAAGTTA
* *
35476824 AAGTTAAAGTTAATTTTGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35476889 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35476954 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCTTTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35477019 AGGAGGCAACGCTACTAAATTGATTTTAA-TTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35477083 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
261 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
35477148 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
35477213 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCTTT
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCTTT
* * *
35477269 AAGTTCAAGTTAACTTAGTATTAGCC-TCCTTGTGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35477333 TGTAAAGACTATATTACAACCTGACTCGTATACTTGCAGACAACACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35477398 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCAGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35477463 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35477528 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGC
261 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
* *
35477593 TCGTTGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGTC
326 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
* * *
35477658 AGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTC-TTT
*
35477715 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTGCTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35477780 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35477845 TTGCAATATTTACACT-TGGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
131 TTGCAATATTTACACTCT-GGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCC
* *
35477909 GAGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
35477974 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-G
260 AATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * *
35478038 GACTCGTAGT-GTGGAATAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATC
324 G-CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATC
*
35478102 GTCAATAGCCATAGCAGTTGCAAAACCAATCACCTGT
388 GTCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35478139 TGCAAGTAAT
Statistics
Matches: 824, Mismatches: 40, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
444 189 0.23
445 234 0.28
446 28 0.03
447 319 0.39
448 54 0.07
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (446 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCTTT
Found at i:35481583 original size:448 final size:447
Alignment explanation
Indices: 35480153--35482361 Score: 4028
Period size: 448 Copynumber: 4.9 Consensus size: 447
35480143 GTTTAAGTTA
*
35480153 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35480218 TGT-AAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35480282 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35480347 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAA-TTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35480412 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35480477 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35480542 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35480600 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35480665 TGTAAAAACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35480730 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
35480795 ATGAGGCTACGCTACTGAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAA
35480860 TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
261 TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
*
35480925 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
35480990 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35481047 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35481112 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35481177 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35481242 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTT-AGTTTTATAGGATAATTTGGAAATTTATAA
*
35481307 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* * *
35481372 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35481437 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35481495 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35481560 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35481625 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35481690 AGGAGGCAACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAA-TTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35481755 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGT
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35481820 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35481885 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
* *
35481943 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35482007 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35482072 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTG-CG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35482136 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTT-AGTTTTATAGGATAATTTGGAAATTTATAA
* *
35482201 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
35482266 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35482331 CAATAGCCATAGCAGATGCAAAACCAATCAC
390 CAATAGCCATAGCAGATGCAAAACCAATCAC
35482362 TTGTTGCAAG
Statistics
Matches: 1712, Mismatches: 46, Indels: 9
0.97 0.03 0.01
Matches are distributed among these distances:
445 5 0.00
446 215 0.13
447 639 0.37
448 848 0.50
449 5 0.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (447 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAA
TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35482011 original size:895 final size:894
Alignment explanation
Indices: 35480153--35482361 Score: 4053
Period size: 895 Copynumber: 2.5 Consensus size: 894
35480143 GTTTAAGTTA
35480153 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35480218 TGT-AAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35480282 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTG-CG
* *
35480347 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35480412 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35480477 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35480542 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
*
35480607 AGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
455 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
* *
35480672 ACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
520 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
*
35480737 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGATGAGGC
585 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
* *
35480802 TACGCTACTGAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGA
650 AACGCTACTAAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGA
*
35480867 TACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGCTCGTAGT
715 TACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAGT
*
35480932 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTCAATAGCC
780 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCAATAGCC
35480997 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
845 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35481047 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35481112 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35481177 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGC-G
35481242 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35481307 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * *
35481372 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35481437 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
35481502 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
455 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
35481567 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
520 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
35481632 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
585 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
35481697 AACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
650 AACGCTACTAAATTGATTTTAA-TTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
* *
35481762 ATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGTCTTGTAG
714 ATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAG
*
35481827 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGTCAATAGC
779 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCAATAGC
* * *
35481892 CATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
844 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35481943 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35482007 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35482072 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCGA
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCGA
*
35482137 GGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
196 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
*
35482202 TTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
261 TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
35482267 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
35482332 AATAGCCATAGCAGATGCAAAACCAATCAC
391 AATAGCCATAGCAGATGCAAAACCAATCAC
35482362 TTGTTGCAAG
Statistics
Matches: 1268, Mismatches: 44, Indels: 6
0.96 0.03 0.00
Matches are distributed among these distances:
894 288 0.23
895 707 0.56
896 273 0.22
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (894 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCGA
GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCAA
GTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAA
CTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATA
TTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGCA
ACGCTACTAAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGAT
ACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAGTA
GTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCAATAGCCA
TAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35483703 original size:815 final size:815
Alignment explanation
Indices: 35481943--35490018 Score: 6926
Period size: 815 Copynumber: 9.5 Consensus size: 815
35481933 ATATTCGTTT
*
35481943 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35482007 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35482072 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTG-CG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35482136 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35482201 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
35482266 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35482331 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
35482396 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
35482461 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
35482526 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
35482591 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
35482656 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
716 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
35482721 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35482756 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35482821 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35482886 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCTTTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35482951 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35483016 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
35483081 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35483146 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
35483211 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
35483276 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
35483341 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
35483406 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
35483471 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
716 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
35483536 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35483571 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35483636 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35483701 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35483766 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35483831 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
35483896 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * ** * * *
35483961 CAATAGCCATAGCAGATGCAAAACCAATCACCTG-TACTAATTAGATATA-TATTCGTTTAAGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGC-AAGCA-ATCTACTATGCG-ATAA---
** * * ** *** *** *** ** *
35484024 CAAGTTAATTT-A-GTA-TTAGCCTTCCTT-GGGTTTGATCCTTGGAGTACTCACCTACTTCG-T
450 CCCGTT-GTTTGATG-AGGTAAACGAACTTAACATCCAAGACTT--AGCAC-CACC-AC--CGCT
** * ** * * * * ***
35484084 -TGTAAAAACTATATTAGAACTT-GACTCGTAT-ACTTGCAGA-C-ACCACCTCAATTCCATTCA
507 AT-TACCAGC-A-A--A-CCCTTCGA-TGGCATGA---GAAGAGCGA-AACCT--A----AGGGA
* ** * * * * ** ***
35484144 TTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTC-CGG-AGGCGGT-CAAGTGTTTGGTGC
555 -TTA--TGCACTA-CCA-AATCTGG-TGAT-G-GT-TCAAGGTA-GCATTACAAG-G---CCAGC
*** * ** ** * ** ** * * * **
35484206 CATTGCCGAT-GAGGCTACGCTACTG-AATTGATTTTA--ATTTTTTAGTTTTAT--AGGATAAT
606 CATT----ATGGAAAATA--ATTTTGAAATAAAATCGACCATGATCTAG-ATGATCCAAAATAAT
* * * * * ***** ** * * * * *** **
35484265 TTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA-CATCTTTTATTTTCTTTTT
664 CT-GCAA-TT-CAGA--G--GA-ACCA-TGACGGA-TGACACAAATCAACATCTA-AAAC---GG
* * * * * * * * **
35484329 AGT-TTCAGTGTATGGCTCGTAGTAGTGGAACAGT-T-ATAGAGC-GAGTCACTGATCTAAAGAG
715 GGTCTTCAAT-T-T---T-GT-G-A-T---ACATTCTAATATAACGGGGTCATTGA--TGAAGCT
* * * * * * * * * * *
35484390 AATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGAT
766 ATTCATCT-TCGG--TTGT---T-TCC----C---T---TATCC-TTGATC-G-A-T-ATTCG-T
* *
35484455 ATATATTCGTTT
808 -T-TA--AGTTA
*
35484467 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35484532 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35484597 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35484662 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35484727 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * *
35484792 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* ** * *
35484857 CAATAGCCATAGCAGATGCAAAACCAATCA-TCTG-TACTAATTAGATCTA-TATTCGTTTAAGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACT-TGTTGC-AAGCA-ATCTACTATGCG-ATAA--
** * * ** *** *** *** ** *
35484919 TCAAGTTAATTT-A-GTA-TTAGCCTCCCTT-GGGTTTGATCCTTGGAGTACTCACCTACTTCG-
450 -CCCGTT-GTTTGATG-AGGTAAACGAACTTAACATCCAAGACTT--AGCAC-CACC-AC--CGC
** * * * * * * * ***
35484979 T-TGTAAAAACTATATTACAACCTGACTCGTAT-ACTTGCAGACACCACCTCAATTCC--ATTCA
506 TAT-TACCAGC-A-A--AC--CCT---TCG-ATGGCATG-AGA-A-GAGC-GAA-ACCTAAGGGA
* ** * * * * ** ***
35485040 TTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGT-TTGGTGCCA
555 -TTA--TGCACTA-CCA-AATCTGG-TG--A-T-GGTTC-AAGGTAG-C-A-T-TACAAG-GCCA
** * * ** * * **** ** * * ***
35485104 TTGCCGAGGA-GGCAACGCTACTAA-ATTGATTTTAAGT-TTTTAGTTTTATAGGATAATTTGGA
604 --GCC-ATTATGG-AA----AATAATTTTGAAATAAAATCGACCA-TGATCTA-GATGA-TCCAA
* * * * ***** ** * * * * *** ****
35485166 AAT-TTAT-AAATT--GTA-GATACAATTTTTTTATTGTTACTAA-CATCTTTTATTTTCTTTTT
658 AATAATCTGCAATTCAG-AGGA-ACCA-TGACGGA-TGACACAAATCAACATCTA-AAACGGGGT
* * * * * * * **
35485225 AGTTCCAGTGTATGTCTTGTAGTAGTGGAACAGT-T-ATAGAGC-GAGTCACTGATCTAGAGAGA
718 -CTT-CA----AT-T-TTGT-G-A-T---ACATTCTAATATAACGGGGTCATTGAT-GA-AGCTA
* * * * ** * * ** * *
35485287 ATAATCTCTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTT-GTACTAA-TTA
767 TTCATCT-TCGG--TTGT---TTCCCTTATC-CTTG---ATCG-AT-A-TTCGT-TTAAGTTA
* *
35485348 GA-TCTATATTCGTTTAAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAG
1 AAGT-TA-A--AG-TTA-----------ATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAG
* * *
35485412 TACTCACCTA-TTTGTTGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTC
50 TACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTC
35485476 AATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG
115 AATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG
* *
35485541 TTTGGAGCCATTGCCGAGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATA
180 TTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATA
*
35485606 ATTTGGAAATTTATAAATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTT
245 ATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTT
35485671 TAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAAT
310 TAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAAT
35485736 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTAC
375 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTAC
35485801 TATGCGATAACCCGTTGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCG
440 TATGCGATAACCCGTTGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCG
35485866 CTATTACCAGCAAACCCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAA
505 CTATTACCAGCAAACCCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAA
35485931 TCTGGTGATGGTTCAAGGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAAT
570 TCTGGTGATGGTTCAAGGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAAT
35485996 CGACCATGATCTAGATGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAAT
635 CGACCATGATCTAGATGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAAT
35486061 CAACATCTAAAACGGGGTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGC
700 CAACATCTAAAACGGGGTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGC
35486126 TATTCATCTTCGGTTGTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
765 TATTCATCTTCGGTTGTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35486177 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35486242 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35486307 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCTTTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35486372 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35486437 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
35486502 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35486567 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
35486632 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
35486697 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
35486762 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
35486827 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
35486892 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
716 GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
35486957 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35486992 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35487057 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35487122 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35487187 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35487252 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
35487317 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * ** * * *
35487382 CAATAGCCATAGCAGATGCAAAACCAATCACCTG-TACTAATTAGATATA-TATTCGTTTAAGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGC-AAGCA-ATCTACTATGCG-ATAA---
** * * ** *** *** *** ** *
35487445 CAAGTTAATTT-A-GTA-TTAGCCTTCCTT-GGGTTTGATCCTTGGAGTACTCACCTACTTCG-T
450 CCCGTT-GTTTGATG-AGGTAAACGAACTTAACATCCAAGACTT--AGCAC-CACC-AC--CGCT
** * ** * * * * ***
35487505 -TGTAAAAACTATATTAGAACTT-GACTCGTAT-ACTTGCAGA-C-ACCACCTCAATTCCATTCA
507 AT-TACCAGC-A-A--A-CCCTTCGA-TGGCATGA---GAAGAGCGA-AACCT--A----AGGGA
* ** * * * * ** ***
35487565 TTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTC-CGG-AGGCGGT-CAAGTGTTTGGTGC
555 -TTA--TGCACTA-CCA-AATCTGG-TGAT-G-GT-TCAAGGTA-GCATTACAAG-G---CCAGC
*** * ** ** * ** ** * * * **
35487627 CATTGCCGAT-GAGGCTACGCTACTG-AATTGATTTTA--ATTTTTTAGTTTTAT--AGGATAAT
606 CATT----ATGGAAAATA--ATTTTGAAATAAAATCGACCATGATCTAG-ATGATCCAAAATAAT
* * * * * ***** ** * * * * *** **
35487686 TTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA-CATCTTTTATTTTCTTTTT
664 CT-GCAA-TT-CAGA--G--GA-ACCA-TGACGGA-TGACACAAATCAACATCTA-AAAC---GG
* * * * * * * * **
35487750 AGT-TTCAGTGTATGGCTCGTAGTAGTGGAACAGT-T-ATAGAGC-GAGTCACTGATCTAAAGAG
715 GGTCTTCAAT-T-T---T-GT-G-A-T---ACATTCTAATATAACGGGGTCATTGA--TGAAGCT
* * * * * * * * * * *
35487811 AATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGAT
766 ATTCATCT-TCGG--TTGT---T-TCC----C---T---TATCC-TTGATC-G-A-T-ATTCG-T
* *
35487876 ATATATTCGTTT
808 -T-TA--AGTTA
*
35487888 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35487953 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35488018 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35488083 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35488148 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * *
35488213 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * ** * *
35488278 TAATAGCCATAGCAGATGCAAAACCAATCA-TCTG-TACTAATTAGATCTA-TATTCGTTTAAGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACT-TGTTGC-AAGCA-ATCTACTATGCG-ATAA--
** * * ** *** *** *** ** *
35488340 TCAAGTTAATTT-A-GTA-TTAGCCTCCCTT-GGGTTTGATCCTTGGAGTACTCACCTACTTCG-
450 -CCCGTT-GTTTGATG-AGGTAAACGAACTTAACATCCAAGACTT--AGCAC-CACC-AC--CGC
** * * * * * * * ***
35488400 T-TGTAAAAACTATATTACAACCTGACTCGTAT-ACTTGCAGACACCACCTCAATTCC--ATTCA
506 TAT-TACCAGC-A-A--AC--CCT---TCG-ATGGCATG-AGA-A-GAGC-GAA-ACCTAAGGGA
* ** * * * * ** ***
35488461 TTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGT-TTGGTGCCA
555 -TTA--TGCACTA-CCA-AATCTGG-TG--A-T-GGTTC-AAGGTAG-C-A-T-TACAAG-GCCA
** * * ** * * **** ** * * ***
35488525 TTGCCGAGGA-GGCAACGCTACTAA-ATTGATTTTAAGT-TTTTAGTTTTATAGGATAATTTGGA
604 --GCC-ATTATGG-AA----AATAATTTTGAAATAAAATCGACCA-TGATCTA-GATGA-TCCAA
* * * * ***** ** * * * * *** ****
35488587 AAT-TTAT-AAATT--GTA-GATACAATTTTTTTATTGTTACTAA-CATCTTTTATTTTCTTTTT
658 AATAATCTGCAATTCAG-AGGA-ACCA-TGACGGA-TGACACAAATCAACATCTA-AAACGGGGT
* * * * * * * **
35488646 AGTTCCAGTGTATGTCTTGTAGTAGTGGAACAGT-T-ATAGAGC-GAGTCACTGATCTAGAGAGA
718 -CTT-CA----AT-T-TTGT-G-A-T---ACATTCTAATATAACGGGGTCATTGAT-GA-AGCTA
* * * * ** * * ** * *
35488708 ATAATCTCTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCACTT-GTACTAA-TTA
767 TTCATCT-TCGG--TTGT---TTCCCTTATC-CTTG---ATCG-AT-A-TTCGT-TTAAGTTA
* *
35488769 GA-TCTATATTCGTTTAAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAG
1 AAGT-TA-A--AG-TTA-----------ATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAG
* * *
35488833 TACTCACCTA-TTTGTTGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTC
50 TACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTC
35488897 AATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG
115 AATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG
* *
35488962 TTTGGAGCCATTGCCGAGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATA
180 TTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATA
*
35489027 ATTTGGAAATTTATAAATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTT
245 ATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTT
35489092 TAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAAT
310 TAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAAT
35489157 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTAC
375 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTAC
35489222 TATGCGATAACCCGTTGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCG
440 TATGCGATAACCCGTTGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCG
35489287 CTATTACCAGCAAACCCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAA
505 CTATTACCAGCAAACCCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAA
35489352 TCTGGTGATGGTTCAAGGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAAT
570 TCTGGTGATGGTTCAAGGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAAT
35489417 CGACCATGATCTAGATGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAAT
635 CGACCATGATCTAGATGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAAT
35489482 CAACATCTAAAACGGGGTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGC
700 CAACATCTAAAACGGGGTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGC
35489547 TATTCATCTTCGGTTGTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
765 TATTCATCTTCGGTTGTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35489598 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35489663 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35489728 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35489793 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35489858 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
35489923 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35489988 CAATAGCCATAGCAGATGCAAAACCAATCAC
391 CAATAGCCATAGCAGATGCAAAACCAATCAC
35490019 CTGTACTAAT
Statistics
Matches: 6158, Mismatches: 683, Indels: 842
0.80 0.09 0.11
Matches are distributed among these distances:
813 59 0.01
814 224 0.04
815 2563 0.42
816 14 0.00
817 10 0.00
818 14 0.00
819 20 0.00
820 14 0.00
821 6 0.00
822 10 0.00
823 6 0.00
824 2 0.00
825 6 0.00
826 10 0.00
827 16 0.00
828 22 0.00
829 26 0.00
830 8 0.00
831 6 0.00
834 8 0.00
835 18 0.00
837 12 0.00
838 8 0.00
839 12 0.00
840 20 0.00
841 30 0.00
842 26 0.00
843 24 0.00
844 2 0.00
845 14 0.00
846 22 0.00
847 20 0.00
848 22 0.00
849 20 0.00
850 6 0.00
851 2 0.00
852 4 0.00
853 18 0.00
854 42 0.01
855 64 0.01
856 24 0.00
857 6 0.00
858 18 0.00
859 16 0.00
860 2 0.00
861 10 0.00
862 4 0.00
863 4 0.00
864 6 0.00
865 10 0.00
866 8 0.00
867 20 0.00
868 12 0.00
869 22 0.00
870 18 0.00
871 12 0.00
872 8 0.00
873 12 0.00
874 4 0.00
875 12 0.00
876 12 0.00
877 2 0.00
878 10 0.00
879 12 0.00
880 4 0.00
881 8 0.00
882 8 0.00
883 2 0.00
884 10 0.00
885 18 0.00
886 14 0.00
887 20 0.00
888 16 0.00
889 8 0.00
890 16 0.00
891 30 0.00
892 16 0.00
893 18 0.00
894 22 0.00
895 719 0.12
896 1393 0.23
897 8 0.00
898 2 0.00
899 16 0.00
900 18 0.00
901 16 0.00
902 20 0.00
903 16 0.00
904 34 0.01
905 4 0.00
906 4 0.00
907 4 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCAAACC
CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
GTCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
Found at i:35484412 original size:448 final size:448
Alignment explanation
Indices: 35483571--35485782 Score: 4048
Period size: 448 Copynumber: 4.9 Consensus size: 448
35483561 GTTTAAGTTA
*
35483571 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35483636 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35483701 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35483766 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35483831 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35483896 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35483961 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35484019 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35484084 TGTAAAAACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35484149 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
35484214 ATGAGGCTACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35484279 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35484344 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35484409 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35484467 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35484532 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35484597 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35484662 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35484727 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* * *
35484792 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35484857 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35484915 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35484980 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35485045 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35485110 AGGAGGCAACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35485175 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35485240 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35485305 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
* *
35485363 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35485427 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35485492 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35485557 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35485622 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
35485687 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35485752 CAATAGCCATAGCAGATGCAAAACCAATCAC
391 CAATAGCCATAGCAGATGCAAAACCAATCAC
35485783 TTGTTGCAAG
Statistics
Matches: 1712, Mismatches: 52, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
447 348 0.20
448 1364 0.80
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35487833 original size:448 final size:448
Alignment explanation
Indices: 35486992--35489203 Score: 4039
Period size: 448 Copynumber: 4.9 Consensus size: 448
35486982 GTTTAAGTTA
*
35486992 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35487057 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35487122 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35487187 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35487252 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35487317 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35487382 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35487440 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35487505 TGTAAAAACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35487570 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
35487635 ATGAGGCTACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35487700 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35487765 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35487830 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35487888 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35487953 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35488018 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35488083 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35488148 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* * *
35488213 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35488278 TAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35488336 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35488401 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35488466 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35488531 AGGAGGCAACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35488596 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35488661 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35488726 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
* *
35488784 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35488848 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35488913 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35488978 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35489043 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
35489108 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35489173 CAATAGCCATAGCAGATGCAAAACCAATCAC
391 CAATAGCCATAGCAGATGCAAAACCAATCAC
35489204 TTGTTGCAAG
Statistics
Matches: 1710, Mismatches: 54, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
447 348 0.20
448 1362 0.80
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35490574 original size:447 final size:448
Alignment explanation
Indices: 35489598--35491812 Score: 4031
Period size: 448 Copynumber: 4.9 Consensus size: 448
35489588 GTTTAAGTTA
*
35489598 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35489663 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35489728 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35489793 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35489858 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35489923 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35489988 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35490046 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35490111 TGTAAAAACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35490176 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
35490241 ATGAGGCTACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35490306 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35490370 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35490435 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35490493 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35490558 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35490623 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35490688 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35490753 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* * *
35490818 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35490883 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35490941 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35491006 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35491071 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35491136 AGGAGGCAACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35491201 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35491266 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35491331 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
* *
35491389 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35491453 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35491518 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35491583 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35491648 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAATGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35491712 ACTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCG
326 -CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
35491777 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35491813 TGCAAGCAAT
Statistics
Matches: 1712, Mismatches: 53, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
446 1 0.00
447 785 0.46
448 926 0.54
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35491457 original size:895 final size:895
Alignment explanation
Indices: 35489598--35491812 Score: 4054
Period size: 895 Copynumber: 2.5 Consensus size: 895
35489588 GTTTAAGTTA
35489598 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35489663 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCTGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35489728 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35489793 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35489858 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTGTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35489923 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35489988 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
*
35490053 AGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
* *
35490118 ACTATATTAGAACTTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
*
35490183 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGATGAGGC
586 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
* * *
35490248 TACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
651 AACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
*
35490313 ATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGCTCGTAGT
716 ATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAGT
35490378 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTCAATAGCC
781 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTCAATAGCC
35490443 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
846 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35490493 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35490558 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35490623 TTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCTG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35490688 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35490753 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * * *
35490818 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35490883 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
35490948 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
35491013 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
35491078 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
586 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
35491143 AACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
651 AACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
* *
35491208 ATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGTCTTGTAG
716 ATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAG
*
35491273 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
780 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTCAATAGC
* * *
35491338 CATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
845 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35491389 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTA-TTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35491453 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35491518 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35491583 AGGAGACAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* * *
35491648 ATTGTAGATACAATGTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAATGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35491713 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35491778 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35491813 TGCAAGCAAT
Statistics
Matches: 1269, Mismatches: 50, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
895 1044 0.82
896 225 0.18
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (895 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTTAAGTTCA
AGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
AACGCTACTAAATTGATTTTAAGTTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
ATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGCTCGTAGT
AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGTCAATAGCC
ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35496126 original size:24 final size:24
Alignment explanation
Indices: 35496067--35496127 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
35496057 ACCCCAAGCC
35496067 GGAAGGAAATGAGGAAAGGGAAGA
1 GGAAGGAAATGAGGAAAGGGAAGA
*
35496091 --AAGTAAGGATGAGG-AAGGAGAAGA
1 GGAAGGAA--ATGAGGAAAGG-GAAGA
35496115 GGAAGGAAATGAG
1 GGAAGGAAATGAG
35496128 ATGGATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
22 5 0.17
23 4 0.13
24 16 0.53
26 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.44, T:0.07
Consensus pattern (24 bp):
GGAAGGAAATGAGGAAAGGGAAGA
Found at i:35504516 original size:53 final size:52
Alignment explanation
Indices: 35504446--35504551 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 52
35504436 AACAATAAAT
* *
35504446 TATTGAAAAGATCAAATCATATAAGAAATTATTGCAAAATTAATCAATCTCA
1 TATTCAAAAGATCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
*
35504498 TATTCAAAAGATTCAAATCATATAATAAATTATTGCAAAATCAATCAATCTCA
1 TATTCAAAAGA-TCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
35504551 T
1 T
35504552 GCATATTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
52 10 0.20
53 40 0.80
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (52 bp):
TATTCAAAAGATCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
Found at i:35508387 original size:25 final size:26
Alignment explanation
Indices: 35508326--35508426 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
35508316 ACATATTTTC
* *
35508326 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACCGGGGGTAAAATCG
*
35508352 TCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCGGGGGTAAAATCG
* *
35508378 TCAAAA-TTTACCGAGGGTAAAATTG
1 TCAAAATTTTACCGGGGGTAAAATCG
* **
35508403 TCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCGGGGGTAAAAT
35508427 AGGGATGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 22 0.34
26 42 0.66
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
TCAAAATTTTACCGGGGGTAAAATCG
Found at i:35508407 original size:51 final size:52
Alignment explanation
Indices: 35508326--35508426 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 52
35508316 ACATATTTTC
*
35508326 TCAAAATTTTACCAGGGGTAAAATCATCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
** *
35508378 TCAAAA-TTTACC-GAGGGTAAAATTGTCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCAG-GGGTAAAATCATCAAAATATTACTGGGGGTAAAAT
35508427 AGGGATGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.02
51 37 0.84
52 6 0.14
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (52 bp):
TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
Found at i:35521545 original size:779 final size:785
Alignment explanation
Indices: 35519817--35522495 Score: 3657
Period size: 779 Copynumber: 3.5 Consensus size: 785
35519807 ATATTCGTTT
* *
35519817 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTGCTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCC-TCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
*
35519882 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
65 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35519947 TTGCAATATTTACACT-TGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
130 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG-TTGGTGCCATTGCCG
* *
35520011 AGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
194 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAA-TTATAA
*
35520076 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTAGGAC
258 A-TGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGAC
* * * *
35520141 TCGTAGT-GTGGAATAATTATAAAGCGAGTCACTGATCTAGA-AGAATAATCTATAGGAATCGTC
321 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
*
35520204 AATAGCCATAGCTAG-TGCAAAACCAATCACCTGTTTGCAAG-AATCTACCAA-GCGATAA-CCG
386 AATAGCCATAGC-AGATGCAAAACCAATCACCTG-TTGCAAGCAATCTA-CAATGCGATAACCCT
* *
35520265 TATTGATGAGG-AAACGAACTTAACA-CCAAGACTTAC-CAACCACCGCAATTACCAGCAAAACC
448 TGTTGATGAGGTAAACGAACTTAACATCCAAGACTTACACCACCACCGCAATTACCAGC-AAACC
35520327 TTCGATGGCATGAG-AAGCGAAA-CTAAGGGA-TACGCACACCAAAA--TGGT-ATGGTCAAGGT
512 TTCGATGGCATGAGAAAGCGAAACCTAAGGGATTACGCACACCAAAATCTGGTGATGGTCAAGGT
35520386 AGC-TTACAAGGCCAACCATTAT-GAAAATAATTTTGAAATAAAATCGACCAAGATCTAATGATC
577 AGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACC-AGATCTAATGATC
*
35520449 CAAAATAATCTCATTCAGAGGCACATGACGGATGACCCAAATCACATCTAAAACGTCCTTCAATT
641 CAAAA-AATCTCAATCAGAGGC-CATGACGGATGA-CC-AATCACATCTAAAAC-TCC-TCAATT
*
35520514 T-TG-TGACATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGTTGTTTCCCTTATC
700 TGTGAT-ACATTT-AATATAACGGGGTCATTGATGAAGC-ATTCATCTTCGTTGTTTCCCTTATC
35520577 CTTGATCGATATTC--TTAAGTTA
762 CTTGATCGATATTCGTTTAAGTTA
35520599 AAG-TAAAGTTAATTT-GTATTAG-C-CCTT-GGTTTGATCCTTGGAGTACTCACCTACTTCATT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCATT
35520659 GTAAAAACTATATTACAACCACTGACTCGTATACTTGCAGACACCACCTCAATTCGCATTCATTT
66 GTAAAAACTATATTACAA-C-CTGACTCGTATACTTGCAGACACCACCTCAATTC-CATTCATTT
35520724 AGTTGCAATATTTACACTGCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTTGGTG-CATT
128 AGTTGCAATATTTACACT-CTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG--TTGGTGCCATT
35520788 GCCGAGGAGGCAACGCTAC-AAATTGATTTTAA-TTTTGAGTTTTATAGGATAATTTGGAAATTT
190 GCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAA-TT
35520851 ATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCA-TGTA
254 ATAAA-TGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTA
35520915 TGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAA-CTGTAGGAAT
317 TGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAAT
35520979 CGTCCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACAATGCGATAAAC
382 CGT-CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACAATGCGAT-AAC
35521044 CCTTGTTGATGAGGTAAACGAACTTAACATCCAAGACTTACACCACCACCCGCAATTACCAGCAA
445 CCTTGTTGATGAGGTAAACGAACTTAACATCCAAGACTTACACCACCA-CCGCAATTACCAGCAA
35521109 ACCCTTCGATGGCATGAGAAAGCGAAACCTAAGGGATGTACGCACTACCAAAATCTGGTGATGGT
509 A-CCTTCGATGGCATGAGAAAGCGAAACCTAAGGGAT-TACGCAC-ACCAAAATCTGGTGATGG-
35521174 TCAAGGTAGCATTACAAGGCCAACCATTAATGGAAAATAATTTTGAAAATAAAATCGGACCAGAT
570 TCAAGGTAGCATTACAAGGCCAACCATT-ATGGAAAATAATTTTG-AAATAAAATC-GACCAGAT
35521239 CTAATGATCCAAAAAA-CTCAATCAGAGGCCATGACGGATGACCAATCACATCTAAACACTCC-C
632 CTAATGATCCAAAAAATCTCAATCAGAGGCCATGACGGATGACCAATCACATCTAAA-ACTCCTC
35521302 AATTTGTGATACATTTAATATAA-GGGGTCA-TGATGAAGCATTCATCTTCGGTTGTTTCCCTTA
696 AATTTGTGATACATTTAATATAACGGGGTCATTGATGAAGCATTCATCTTC-GTTGTTTCCCTTA
*
35521365 TCCTTGATCGATATTCATTTAAGTTA
760 TCCTTGATCGATATTCGTTTAAGTTA
35521391 AAGTTAAAG-T-ATTTAGTATTA-CCTCCTTGGG-TTGATCCTT-GAGTACTCACCTACTTC-TT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCATT
35521450 GTAAAAACTATATTACAACCTGACTCGTA-ACTTGC-GACACCA-CTCAATTCCATT-ATTTAG-
66 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
35521510 TGCAATATTTACACTCTGGATG-TAGTA-GT-CGGAGGCGGTCAAGTG-TGGTG-C-TTG-CGAG
131 TGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGAG
35521568 GAGGCAACGCTACTAAATTGA-TTTAATTTTTTGAGTTTTATAGGA-AA--TGGAAATT-T-AAT
196 GAGGCAACGCTACTAAATTGATTTTAA-TTTTTGAGTTTTATAGGATAATTTGGAAATTATAAAT
*
35521627 GTAGATACAA-TTTTTA-TGTTACTAACA-CTTTTATTTTCTTTTAG-TTCAGTGTATAACTC-T
260 GTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGACTCGT
*
35521687 A--AGTGG-ACAGTTATAGAGCGAGTCACTGA-CTAGAGAGAA-ATTCTG-AGG-ATCGTC-ATA
325 AGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATA
35521744 GCCA-AGCAGAT-C-AAA-CAATCA-CTGTTGCAAGCAATCTAC-ATGCGATAACCCTTGTTTGA
390 GCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACAATGCGATAACCCTTG-TTGA
*
35521803 TGAGGTAAACG-ACTTAACATCC-AGACTTACACCACCA-CGC-ATTACAAGCAAACCTTCGATG
454 TGAGGTAAACGAACTTAACATCCAAGACTTACACCACCACCGCAATTACCAGCAAACCTTCGATG
35521864 GCATGAGAAGAGCG-AACCTAA-GGATTA--CACACC-AAATCTGGTGA-GGTCAAGGTAGCA-T
519 GCATGAGAA-AGCGAAACCTAAGGGATTACGCACACCAAAATCTGGTGATGGTCAAGGTAGCATT
35521922 ACAAGGCC-ACCATTATGG-AAA-AA-TTTGAAATAAAATCGACCATGA--TAGATGATCCAAAA
583 ACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCA-GATCTA-ATGATCC-AAA
* * * **
35521981 AAATCGCAATTAGAGGACCAT-ACGGATGACCAAACAACATCTAAAAGGGCCTTCAATTTGTGAT
645 AAATCTCAATCAGAGG-CCATGACGGATGACCAATC-ACATCTAAAA-CTCC-TCAATTTGTGAT
*
35522045 ACA-TTAATATAACGGGGTCATTGATGAAG---T-ATCATCGTTG-TTCCCTTATCCTTGATCGA
706 ACATTTAATATAACGGGGTCATTGATGAAGCATTCATCTTCGTTGTTTCCCTTATCCTTGATCGA
35522104 TATTCGTTTAAG-T-
771 TATTCGTTTAAGTTA
*
35522117 AAGTTAAAGTTAATTTAGTATTAGCCTCC-TGGGTTTGATCCTT-GAGTAC-CACCTACTTC-GT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCATT
* *
35522178 -TAAAAACTATA-TACAACCTG--TC-TATA-TTGCTGACACCACAC-CTA-TCCA-TCATTTAG
66 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCAC-CTCAATTCCATTCATTTAG
35522234 TTGCAATA-TTAC-CTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
130 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
*
35522297 GGAGGCAACGCTACCT-AA-TGATTTTAATTTTT-AG--TTAAAGGATAATTTGGAAATTA-AAA
195 GGAGGCAACGCTA-CTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTATAAA
35522356 TGTAGATACAATTTTTTATTGTTACTAACATC-TTTATTTT-TTTTAGTTTCA-TGTATG-CTCG
259 TGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGACTCG
*
35522417 -AGTAGTGGAACAG-TATAGAGCGA-TCACTGATC-AAAGAGAATAATCTGTAGGAATCGTCAAT
324 TAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAAT
35522478 AGCCATA-CAGATGCAAAA
389 AGCCATAGCAGATGCAAAA
35522496 ACCATCCCTG
Statistics
Matches: 1762, Mismatches: 33, Indels: 249
0.86 0.02 0.12
Matches are distributed among these distances:
723 16 0.01
724 29 0.02
725 11 0.01
726 42 0.02
727 22 0.01
728 71 0.04
729 61 0.03
730 73 0.04
731 51 0.03
732 56 0.03
733 33 0.02
734 20 0.01
735 21 0.01
736 13 0.01
737 5 0.00
738 11 0.01
739 3 0.00
740 3 0.00
742 2 0.00
743 4 0.00
744 25 0.01
745 15 0.01
746 3 0.00
748 15 0.01
749 19 0.01
750 22 0.01
751 18 0.01
752 6 0.00
753 3 0.00
754 1 0.00
755 7 0.00
756 7 0.00
757 1 0.00
758 5 0.00
759 4 0.00
760 13 0.01
761 23 0.01
762 5 0.00
764 6 0.00
765 26 0.01
766 11 0.01
767 6 0.00
769 11 0.01
770 2 0.00
771 1 0.00
772 2 0.00
773 6 0.00
774 22 0.01
775 12 0.01
776 72 0.04
777 5 0.00
778 47 0.03
779 190 0.11
780 71 0.04
781 71 0.04
782 28 0.02
783 29 0.02
784 17 0.01
785 12 0.01
786 38 0.02
787 15 0.01
788 14 0.01
789 20 0.01
790 45 0.03
791 38 0.02
792 49 0.03
793 30 0.02
794 23 0.01
795 14 0.01
796 29 0.02
797 14 0.01
798 15 0.01
799 28 0.02
800 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Consensus pattern (785 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCATT
GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
TGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGAG
GAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTATAAATG
TAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGACTCGTA
GTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAG
CCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACAATGCGATAACCCTTGTTGATG
AGGTAAACGAACTTAACATCCAAGACTTACACCACCACCGCAATTACCAGCAAACCTTCGATGGC
ATGAGAAAGCGAAACCTAAGGGATTACGCACACCAAAATCTGGTGATGGTCAAGGTAGCATTACA
AGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCAGATCTAATGATCCAAAAAATCT
CAATCAGAGGCCATGACGGATGACCAATCACATCTAAAACTCCTCAATTTGTGATACATTTAATA
TAACGGGGTCATTGATGAAGCATTCATCTTCGTTGTTTCCCTTATCCTTGATCGATATTCGTTTA
AGTTA
Found at i:35523822 original size:409 final size:434
Alignment explanation
Indices: 35522116--35524225 Score: 2675
Period size: 409 Copynumber: 4.9 Consensus size: 434
35522106 TTCGTTTAAG
*
35522116 TAAGTTAAAGTTAATTTAGTATTAGCCTCC-TGGGTTTGATCCTT-GAGTAC-CACCTACTTCGT
1 TAAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35522178 -TAAAAACTATA-TACAACCTG--TC-TATA-TTGCTGACACCACAC-CTA-TCCA-TCATTTAG
66 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCAC-CTCAATTCCATTCA-TTAG
35522234 TTGCAATA-TTAC-CTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
129 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
*
35522297 GGAGGCAACGCTACCTAA-TGATTTTAATTTTTAG-TTAAAGGATAATTTGGAAATTA-AAA-TG
194 GGAGGCAACGCTA-CTAATTGATTTTAATTTTTAGTTTATAGGATAATTTGGAAATTATAAATTG
*
35522358 TAGATACAA-TTTTTTATTGTTACTAACATC-TTTATTTT-TTTTAGTTTCATGTATGCTCG-AG
258 TAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGGTATGCTCGTAG
*
35522419 TAGTGGAACAG-TATAGAGCGA-TCACTGATC-AAAGAGAATAATCTGTAGGAATCGTCAATAGC
323 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
* *
35522481 CATA-CAGATGCAAAAACCATCCCTGTA-TAATTAGAT-TATATTCGTT
388 CATAGCAGATGC-AAAACAATCACTGTACTAATTAGATATA-ATTCGTT
35522527 TAAG-TCAA-TTAA-TTAGTA-TAGCC-CCTTGGGTTGTGAT-CTTGGAGTACTCACC-ACTTCG
1 TAAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTT-TGATCCTTGGAGTACTCACCTACTTCG
*
35522585 TTGTGAAAAACTATAATTAGAACTCTGACATCGTATACTTGCAGACACCACACATCAATTCCATT
65 -TGT-AAAAACTAT-ATTACAAC-CTGAC-TCGTATACTTGCAGACACCAC-C-TCAATTCCATT
*
35522650 CATTAGTTGCAATATTTACACTATGGATGTTAGTATGTCC-GAGGCGGTCAAGTGTTTGGTGCCA
123 CATTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTG-TTGGTGCCA
*
35522714 TTGGCCTGAGGA-GCTACGCTAACTGAATTGATTTT-ATTTTTAGTTTATAGGATAATTTGGAAA
187 TT-GCC-GAGGAGGCAACGCT-ACT-AATTGATTTTAATTTTTAGTTTATAGGATAATTTGGAAA
35522777 TTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTG
248 TTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAG-G
35522842 ATACTGAGCTCAGTAGTAGTGGAACAGTTTATAGCGACGCGAGTCACTGATCTAAAGAGAAGAA-
312 -TA-T--GCTC-GTAGTAGTGGAACAG-TTATA--GA-GCGAGTCACTGATCT--AGAG-AGAAT
35522906 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACAATCACCTGTACT-ATTAGATATAA
365 AATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACAATCA-CTGTACTAATTAGATATAA
35522970 TTCGTT
429 TTCGTT
*
35522976 TAAGTTCAAAGTTAGAATTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCAACCTAC-T
1 TAAGTTC-AAGTTA-ATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTC-ACCTACTT
* *
35523040 CGTTGTAAAACCTATATTAGAAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCAT
63 CG-TGTAAAAACTATATTA-CAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCAT
* * *
35523105 TTGTTGCAATATTTACACTCTGGAT-TTAAT-TGTCCGGAGGCGGTCAA-TGTTTGTGCCATTGC
126 TAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGC
35523167 CGAGGA-GCAACG-TACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAA-TTGGAAATTTAT
191 CGAGGAGGCAACGCTACT-AATTGATTTTAATTTTT-AG-TTTATAGGATAATTTGGAAA-TTAT
35523229 AAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTA-TTTCTTTTAGTTTCAGTGTATG
252 AAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAG-GTATG
35523293 -TCGTA-TAG-GGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
316 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
35523355 CAATAGCCATAGCAGATGCAAAACAATCACCTGTAC-AATTAGATCTAATTCG-T
381 CAATAGCCATAGCAGATGCAAAACAATCA-CTGTACTAATTAGATATAATTCGTT
35523408 TAAGTTCAAGTTAATTTAGTA-TAGCCTCCTTGGG-TTGATCCTT-GAGTACTCACCTACTTCGT
1 TAAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35523470 GTAAAAACTATATTAACAACC-GAC-CGTATAC-TGCAGACACCACCTCAATTCCA-TCATTAGT
66 GTAAAAACTATATT-ACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTAGT
* *
35523531 TGCAATATTTACACT-T-AATGTTAGTATGGTCCGGAGGCCGTCAAG-G-TGGTGCCATTGCCGA
130 TGCAATATTTACACTCTGGATGTTAGTAT-GTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
* *
35523592 GGAGGCAACGCTACTAAATTGA-TTTAAGTTTTAGTTTATAGGAT-ATTT-GAAATTAAAAATTG
194 GGAGGCAACGCTACT-AATTGATTTTAATTTTTAGTTTATAGGATAATTTGGAAATTATAAATTG
* *
35523654 TAGATAC-ATTTTTTTATTGTTACT-A-A-CTTTTA-TTTC-TTTAG-TTCAGGTATGTTTGTAG
258 TAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGGTATGCTCGTAG
*
35523712 TAGTGGAACAGTTAATA-A-CGAGTCA-TGATCTAGAG-GAAT-ATCTCTAGG-A-CGTCAATAG
323 TAGTGGAACAGTT-ATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAG
* *
35523770 CCATAAGCA-ATGC-AAACGAATCACTTTACTAATTAGATCT-ATTCGTT
387 CCAT-AGCAGATGCAAAAC-AATCACTGTACTAATTAGATATAATTCGTT
* *
35523817 TAAGTTAAAGTTAATTTAGTATTAGCCT-CTT-GGTTTGA-CCTTGGAGTACTCACCTA-TTATG
1 TAAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTT-CG
* *
35523878 TGTAAAAACTATATTACAACCTGACTCGTGTACATGCAGACACCACCTCAA-T-CATTCATGTA-
65 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCAT-TAG
*
35523940 TTGCAATATTTACACTCTGGATG-TAGTATGTCC-GAGGCGGTCAAGTGTTGGAGCCA-TG-C-A
129 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGA
* *
35524000 GGAGACAACGCAACTAATTGATTTTAATTTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
194 GGAGGCAACGCTACTAATTGATTTTAA-TTTTT-AG-TTTATAGGATAATTTGGAAA-TTATAAA
*
35524065 TTGTAGATACAATTTTTTTATTGTTACTTAACATCTTTTATTTTCTTTTTAGTTTCAGTTAATGA
255 TTGTAGATACAATTTTTTTATTGTTAC-TAACATCTTTTATTTTC-TTTTAGTTTCAGGT-ATG-
* *
35524130 CTCGTAGTAGTGGAACAATTATAGAGAGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
316 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35524195 CAATAGCCATAGCAGATGCAAAACCAATCAC
381 CAATAGCCATAGCAGATGCAAAA-CAATCAC
35524226 CTTTGCAAGC
Statistics
Matches: 1520, Mismatches: 49, Indels: 239
0.84 0.03 0.13
Matches are distributed among these distances:
406 2 0.00
407 20 0.01
408 69 0.05
409 119 0.08
410 51 0.03
411 64 0.04
412 17 0.01
413 28 0.02
414 34 0.02
415 36 0.02
416 5 0.00
417 4 0.00
418 22 0.01
419 36 0.02
420 11 0.01
421 19 0.01
422 63 0.04
423 80 0.05
424 54 0.04
425 33 0.02
426 46 0.03
427 50 0.03
428 16 0.01
429 32 0.02
430 33 0.02
431 31 0.02
432 32 0.02
433 72 0.05
434 2 0.00
435 16 0.01
436 2 0.00
437 4 0.00
438 6 0.00
439 20 0.01
440 3 0.00
441 7 0.00
442 2 0.00
443 3 0.00
444 4 0.00
445 23 0.02
446 9 0.01
447 37 0.02
448 99 0.07
449 44 0.03
450 12 0.01
451 17 0.01
452 40 0.03
453 2 0.00
454 27 0.02
455 18 0.01
456 32 0.02
457 10 0.01
458 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (434 bp):
TAAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTAGTT
GCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTGGTGCCATTGCCGAGG
AGGCAACGCTACTAATTGATTTTAATTTTTAGTTTATAGGATAATTTGGAAATTATAAATTGTAG
ATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGGTATGCTCGTAGTAG
TGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCAT
AGCAGATGCAAAACAATCACTGTACTAATTAGATATAATTCGTT
Found at i:35526026 original size:15 final size:15
Alignment explanation
Indices: 35525985--35526030 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
35525975 ACAATTTATT
*
35525985 TTATTGCTATTGTTAG
1 TTATT-CTATTTTTAG
*
35526001 -TAATC-ATTTTTAG
1 TTATTCTATTTTTAG
35526014 TTATTCTATTTTTAG
1 TTATTCTATTTTTAG
35526029 TT
1 TT
35526031 TAGTGAATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 7 0.28
14 5 0.20
15 13 0.52
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATTCTATTTTTAG
Found at i:35528071 original size:442 final size:437
Alignment explanation
Indices: 35526060--35528229 Score: 3236
Period size: 440 Copynumber: 5.1 Consensus size: 437
35526050 AAAATTAAAG
35526060 GAGTCACTGATCTAGA-A-AATAATCTATAGGAATCGTCAATAGCCATAGCAAGATGCAAAACCA
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGC-AGATGCAAAACCA
*
35526123 ATCAACTCTACTAATTAGATCTATATTCGTTTAAG-TC-AGTTAATTAGTATTAGCCTCCTTGGG
65 ATC-ACTGTACTAATTAGATCTATATTCG-TTAAGTTCAAGTTAATTAGTATTAGCCTCCTTGGG
*
35526186 TTTGATCCTTGGAGTACTCACCTACTTCGTTGT-AAAACTATATTA-AACCTGACTCG-GTACTT
128 TTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTT
*
35526248 GCAGACACCACCTCAATTCCATTCATTTTAGTTGCAATATTTGCACTCTGGATGTTAGTATGTCC
193 GCAGACACCACCTCAATTCCATTCA-TTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCC
*
35526313 GGAGGCGGTCAAGTGTTTGGTGCCA-TG-CGAGGAGCAACG-TACTAAATTGA-TTT-ACTTTGA
257 GGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGCAACGCTACTAAATTGATTTTAATTTTGA
35526373 G-TTA-AGGA-AA-TTGGAAATT-TAAATTG-AGATACAATTTTTTATTGTTA-TAACAT-TTTA
322 GTTTATAGGATAATTTGGAAATTATAAATTGTAGATACAATTTTTTATTGTTACTAACATCTTTA
*
35526430 TTTT-TTTTAGTTTCAGTGTA--G-TCGCAGT--TGGAACAGTT-TAGAGC
387 TTTTCTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGC
35526474 GAGTCA-TGATCT-GAGAGAA-AATCT-TAGGAA-CGT-AATAGCCATAGCA-AT-C-AAACCAA
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
* *
35526530 TCACCTGTA--AATTAGAT-TA-ATTCATTTAGTTCAAGTTAAGTTAGTA-TAGCCTCC-TGGG-
66 TCA-CTGTACTAATTAGATCTATATTCGTTAAGTTCAAGTTAA-TTAGTATTAGCCTCCTTGGGT
*
35526588 TTGAT-CTTGG-GTAC-CACCTAC-TCATTGT-AAAACTATA-TACAACCTGACTCGTATACTTG
129 TTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTG
35526647 CAGACACCACCTCAATTCCATT-ATTTAG-TGCAATATTTACACTCTGGATGTTAGTATGTCCGG
194 CAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGG
35526710 AGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGCAACGCTACTAAATTGA-TTTAATTTTGAGT
259 AGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGCAACGCTACTAAATTGATTTTAATTTTGAGT
35526774 TTATAGGATAATTTGGAAATT-TAAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTA
324 TTATAGGATAATTTGGAAATTAT-AAATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTA
*
35526838 -TTTC-TTTAGTTTCAGTG-ATGACTCGTAGTAGTGGAACAGTTATAGAGC
387 TTTTCTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGC
*
35526886 GAGTCA-TGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
*
35526950 TCACTGTACTAATTAGATCTATATTCGTTTAAGTTCAAGTTAATTAGTATTAGCCTTCTTGGGTT
66 TCACTGTACTAATTAGATCTATATTCG-TTAAGTTCAAGTTAATTAGTATTAGCCTCCTTGGGTT
* *
35527015 TGAT-CTTGGAGTACTCACCTAC-TCGTTGTAAAAGCTATATTAGAACCTGACTCGTATACTTGC
130 TGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGC
35527078 AGACACCA-CTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATG-TAGTATGTCC-GA
195 AGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGA
*
35527140 GGCGGTCAAATGTTT-G-GCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTGAGT
260 GGCGGTCAAGTGTTTGGTGCCATTGCCGAGGA-GCAACGCTACTAAATTGATTTTAATTTTGAGT
35527203 TTATAGG-TAATTTGGAAATTATAAATTGTAGATACAATTTTTTATTG-TACTAACATC-TTA-T
324 TTATAGGATAATTTGGAAATTATAAATTGTAGATACAATTTTTTATTGTTACTAACATCTTTATT
* * *
35527264 TTCTTTTAGTTTCAGTGTATGTCT-GCA-TA-TGGAACAATTATAGAGC
389 TTCTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGC
*
35527310 GAGTCACTGATC-AGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGC-AAACC-A
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
*
35527372 TCACTGTACTAA-TAGATCTATATTC-TTTAGTTCAAG-TAATTAGTATTAGCCTCCTTGGG-TT
66 TCACTGTACTAATTAGATCTATATTCGTTAAGTTCAAGTTAATTAGTATTAGCCTCCTTGGGTTT
35527433 GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATA-TACAACCTGACTCGTATACTTGCA
131 GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCA
35527497 GACA-CACCTCAATTCCATTCATTTAGTTGCAATA-TTACACTCTGGATGTTAGTATGTCCGGAG
196 GACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAG
* *
35527560 GCGGTCAAGTGTTTGGTGCCATTGCCGTGGAGGCAACGCT-CTTAATTGATTTTAATTTTGAGTT
261 GCGGTCAAGTGTTTGGTGCCATTGCCGAGGA-GCAACGCTACTAAATTGATTTTAATTTTGAG-T
35527624 TTATAGGATAATTTGGAAATTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTA
324 TTATAGGATAATTTGGAAATTATAAATTGTAGATACAA-TTTTTTATTGTTACTAACATC-TTTA
*
35527689 TTTTCTTTTAGTTCCAGTGTATGGCTTCGTAGTAGTGGAACAGTTATAGAGC
387 TTTTCTTTTAGTTTCAGTGTATGGC-TCGTAGTAGTGGAACAGTTATAGAGC
* * *
35527741 GAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGTCAATAGCCGTAGCAGATGCAAAACGAA
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
35527806 TCACTTGTACTAATTAGATCTATATTCGTTAAGTT-AAGTTAATTTAGTATTAGCCTTCCTTGGG
66 TCAC-TGTACTAATTAGATCTATATTCGTTAAGTTCAAGTTAA-TTAGTATTAGCC-TCCTTGGG
*
35527870 TTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGTACTT
128 TTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTT
*
35527935 GCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATG-TAGTATGTTCG
193 GCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCG
* *
35527999 GAGGCGGTCAAGTGTTTGGAGCCATTGCCGAGGACGCAACACTACTAAA-TGATTTTAATTTTTG
258 GAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGA-GCAACGCTACTAAATTGATTTTAA-TTTTG
35528063 AGTTTATAGGAT-ATTTGGAAATTTATAAATTGTAGATACAATTTTTTATTGTTACTAACATCTT
321 AGTTTATAGGATAATTTGGAAA-TTATAAATTGTAGATACAATTTTTTATTGTTACTAACATCTT
* * *
35528127 TATTTTCTTTTTAGTTTCAGTGTA-GGACTCGTAGTAGTGGAATAATTATAAAGC
385 TATTTTC-TTTTAGTTTCAGTGTATGG-CTCGTAGTAGTGGAACAGTTATAGAGC
35528181 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATA
1 GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATA
35528230 CATAAAAAAT
Statistics
Matches: 1617, Mismatches: 47, Indels: 158
0.89 0.03 0.09
Matches are distributed among these distances:
395 57 0.04
396 9 0.01
397 39 0.02
398 49 0.03
399 11 0.01
400 8 0.00
401 13 0.01
402 12 0.01
403 26 0.02
404 20 0.01
405 9 0.01
406 27 0.02
407 23 0.01
408 6 0.00
409 7 0.00
410 12 0.01
411 13 0.01
412 26 0.02
413 19 0.01
414 13 0.01
415 6 0.00
416 3 0.00
417 34 0.02
418 106 0.07
419 48 0.03
420 32 0.02
421 51 0.03
422 45 0.03
423 25 0.02
424 97 0.06
425 18 0.01
426 38 0.02
427 55 0.03
428 61 0.04
429 59 0.04
430 48 0.03
431 50 0.03
432 42 0.03
433 4 0.00
434 5 0.00
435 8 0.00
436 16 0.01
437 9 0.01
438 12 0.01
439 8 0.00
440 123 0.08
441 73 0.05
442 117 0.07
443 25 0.02
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (437 bp):
GAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAA
TCACTGTACTAATTAGATCTATATTCGTTAAGTTCAAGTTAATTAGTATTAGCCTCCTTGGGTTT
GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCA
GACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAG
GCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGCAACGCTACTAAATTGATTTTAATTTTGAGTTT
ATAGGATAATTTGGAAATTATAAATTGTAGATACAATTTTTTATTGTTACTAACATCTTTATTTT
CTTTTAGTTTCAGTGTATGGCTCGTAGTAGTGGAACAGTTATAGAGC
Found at i:35529503 original size:446 final size:446
Alignment explanation
Indices: 35528526--35529838 Score: 2371
Period size: 447 Copynumber: 2.9 Consensus size: 446
35528516 GTTTAAGTTA
*
35528526 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35528591 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACAACACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35528656 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
* * *
35528721 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35528786 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGGC
261 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTCCAGTGTATGGC
35528851 TCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTC
325 TCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTC
35528916 AGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
390 AGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
* * *
35528973 AAGTAAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCTCCTGCTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35529038 TGTAAAAACAATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
35529103 TTGCAATATTTACACT-TGGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
131 TTGCAATATTTACACTCT-GGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
35529167 GAGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
35529232 AATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTCCAGTGTATGGC
260 AATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTCCAGTGTATGGC
*
35529297 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTC
325 TCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTC
35529362 AGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
390 AGTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
35529419 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35529484 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
35529549 TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
*
35529614 AGGGCGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35529679 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTA-GGA
261 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTCCAGTGTATGG-
* * *
35529743 CTCGTAGTAGTGGAATAATTATAAAGCGAGTCACTGAG-CTAGAGAGAATAATCTATAGGAATCG
324 CTCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTG-GTCTAGAGAGAATAATCTCTAGGAATCG
* * *
35529807 TCAATAGCCATAGCAGTTGCAAAACCAATCAC
388 TCAGTAGCCATAGCAGATGCAAAACGAATCAC
35529839 CTGTTGCAAG
Statistics
Matches: 835, Mismatches: 26, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
446 410 0.49
447 424 0.51
448 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (446 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
AGGACGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTCCAGTGTATGGCT
CGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTCA
GTAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
Found at i:35530987 original size:815 final size:815
Alignment explanation
Indices: 35529419--35531472 Score: 3754
Period size: 815 Copynumber: 2.5 Consensus size: 815
35529409 ATATTCGTTT
35529419 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35529484 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35529549 TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35529614 AGG-GCGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
196 AGGAG-GCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
*
35529678 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTAGG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * * * *
35529742 ACTCGTAGTAGTGGAATAATTATAAAGCGAGTCACTGAGCTAGAGAGAATAATCTATAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
* *
35529807 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGTTGCAAGTAATCTACCATGCGATAACCCGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGT
* *
35529872 TGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCATCGCAATTACCGGCAAAC
455 TGTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAAC
*
35529937 CCTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCA
520 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCA
*
35530002 AGGTAGCCTTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
585 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
* *
35530067 TGATCCAAAATAATCTGCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGG
650 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
* * *
35530132 GTCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGGTT
715 GGCCTTCAATTTTGTGATACATTTAAATATAACGGGGTCATTAACGAAGCTATTCATCTTCGGTT
35530197 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35530233 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35530298 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCGATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35530363 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35530428 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35530493 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35530558 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGATTCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35530623 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
* * *
35530688 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTAGCACCACCACCGCTATTACCAGCCAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
* *
35530753 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
35530818 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
35530883 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
*
35530948 GCCTTCAATTTTGTGATACATTCT-AATATAACGGGGTCATTGACGAAGCTATTCATCTTCGGTT
716 GCCTTCAATTTTGTGATACATT-TAAATATAACGGGGTCATTAACGAAGCTATTCATCTTCGGTT
35531012 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
35531048 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35531113 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35531178 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35531243 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35531308 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35531373 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35531438 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35531473 ACTAATTAGA
Statistics
Matches: 1199, Mismatches: 38, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
814 298 0.25
815 900 0.75
816 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
GCCTTCAATTTTGTGATACATTTAAATATAACGGGGTCATTAACGAAGCTATTCATCTTCGGTTG
TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
Found at i:35531984 original size:447 final size:448
Alignment explanation
Indices: 35531048--35533207 Score: 2755
Period size: 447 Copynumber: 4.9 Consensus size: 448
35531038 GTTTAAGTTA
*
35531048 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35531113 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35531178 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
* *
35531243 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35531308 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35531373 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
35531438 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
35531496 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGG-TTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35531560 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35531625 GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
35531690 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35531755 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35531819 CTTGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
* *
35531884 CAATAGCCATAGCAGATGCAAAACCAATCATCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35531942 AAGTTCAAGTTAATTTAGTATTAGCC-TCCATTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCC-TTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
35532006 TTGT---AA--A-A-TA-AA--TGA-TCG--TACTTG-AG--A-CACCTCAATT-CATT-A-TTA
65 TTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
** * * ** * * * * ** * * *** * * *
35532051 AATACACTGGTTAGTATTC-GGAGC--GGTCAGTGTTTGG-TGC---C-ATTGCCGAGGAGGCAA
130 GGTGCAATATTTA-CACTCTGGATCTTAGT-A-TGTCCGGAGGCGGTCAAATG-TTTGGTGCCAT
* *** ** * ** * * **
35532108 CGCTC-CTTA---ATTGATTTTAATTTTGAGTTTATAGGATAATTTGGAAATTTAT---A-AATT
191 TGC-CGAGGAGGCAACGCTACTAA-ATTGA-TTT-TA--AT--TTTTGAGTTTTATAGGATAATT
* * ** *
35532165 GTAGATACAATTTTTTTATTGT---TACTAA------CATCT-TT--TA----------TTTTCT
248 -T-G-GA-AATTTATAAATTGTAGATAC-AATTTTTTTAT-TGTTACTAACATCTTTTATTTTCT
* * * * * *
35532208 TTTGAGTTTCAGTGTATGTCTTGCAGTATTGGAACAATTATAGAGCGAGTCACTGATCT-AAGAG
307 TTTTAGTTTCAGTGTATGGCTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAG
*
35532272 AATAATCTGTAGGGATCGTCAATAGCCATAGCAGATGC-AAACCAATCACCTGTACTAATTAGAT
372 AATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGAT
* *
35532336 CTATATTCCTTT
437 ATATATTCGTTT
* *
35532348 AAGTTCAAGTTAACTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35532413 TGTAAAGACTATATTACAACCTGACTCGTATACTTGCAGACAACACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
35532478 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGA-GC-GTCAAGTGTTTGGTGCCATTGCCG
131 GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
35532541 AGGAGGCAACGCTACTAAATTGATTTTAA-TTTTGAGTTTTATAGGAT-ATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35532604 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTA-TTTCTTTTTAGTTCCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35532668 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
*
35532733 C-ATAGCCATAGCA-ATG-AAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
35532788 AA-TTCAAGTTAATTTAGTATTAGCC-TCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
35532851 TGTAAAAACTATATTACAACATGACTTGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * * * **
35532916 TTTCAATATTTACACTCTGGAT-GTAGTATGTTCGGAGGCGGTCAAGTGTTTGGACCCATTGCCG
131 GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
**
35532980 AGGAGGCAACATTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35533045 ATTGTAGATACAATTTTTTTATTGTTACTAACATATTTTATTTTCTTTTTAGTTTCAGTGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* * * * * * *
35533109 ACTCGTAGTAGTGGAATAATTATAAAGCGAGTCACTGTTCTAGAGAGAATAATCTGTAGGAATCG
326 -CTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCG
*
35533174 TCAATAG-CATAGCAGTTGCAAAACCAATC-CCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35533208 TGCAAGCAAT
Statistics
Matches: 1489, Mismatches: 134, Indels: 183
0.82 0.07 0.10
Matches are distributed among these distances:
406 99 0.07
407 43 0.03
408 61 0.04
409 1 0.00
411 1 0.00
412 1 0.00
413 2 0.00
414 2 0.00
416 3 0.00
417 3 0.00
418 2 0.00
419 6 0.00
420 12 0.01
421 5 0.00
422 18 0.01
423 36 0.02
424 13 0.01
425 15 0.01
426 29 0.02
427 42 0.03
428 17 0.01
429 11 0.01
430 18 0.01
431 7 0.00
432 2 0.00
433 2 0.00
434 6 0.00
436 3 0.00
437 15 0.01
438 120 0.08
439 73 0.05
440 62 0.04
441 127 0.09
442 113 0.08
443 11 0.01
444 12 0.01
445 3 0.00
446 198 0.13
447 261 0.18
448 34 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
GTGCAATATTTACACTCTGGATCTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGCAATAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:35534392 original size:803 final size:803
Alignment explanation
Indices: 35532793--35534793 Score: 3433
Period size: 803 Copynumber: 2.5 Consensus size: 803
35532783 CGTTTAATTC
35532793 AAGTTAATTTAGTATTAGCC-TCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAA
1 AAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGT-AA
* * * *
35532857 AACTATATTACAACATGACTTGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTTCAA
65 AACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAA
* **
35532922 TATTTACACTCTGGATG-TAGTATGTTCGGAGGCGGTCAAGTGTTTGGACCCATTGCCGAGGAGG
130 TATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGG
**
35532986 CAACATTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTA
195 CAACGCTACTAAATTGATTTTAA-TTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTA
* *
35533051 GATACAATTTTTTTATTGTTACTAACATATTTTATTTTCTTTTTAGTTTCAGTGTAGGACTCGTA
259 GATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTA
* * * *
35533116 GTAGTGGAATAATTATAAAGCGAGTCACTGTTCTAGAGAGAATAATCTGTAGGAATCGTCAATAG
324 GTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAG
* *
35533181 -CATAGCAGTTGCAAAACCAATCCCTGTTGCAAGCAATCTACCATGCGATAACCCGTTGTTTGAT
389 CCATAGCAGATGCAAAACCAATCACTGTTGCAAGCAATCTACCATGCGATAACCCGTTGTTTGAT
35533245 GAGGTAAACGAACTTAACATCCAAGCTTACCACCACCACCGCAATTACCAGCAAACCCTTCGATG
454 GAGGTAAACGAACTTAACATCCAAGCTTACCACCACCACCGCAATTACCAG-AAACCCTTCGATG
*
35533310 GCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAATATGGTGATGGTTCAAGGAGCATTA
518 GCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAATATGGTGATGGTTCAAGGAGCATTA
*
35533375 CAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCGTATCTAGATGATCCAAATAA
583 CAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATATCTAGATGATCCAAATAA
* * *
35533440 TCTGCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAACGGGTCCTTCAATTTGT
648 TCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAACGGGGCCTTCAATTTGT
*
35533505 GATGCATTTAAATATAACAGGGTCATTAATGAAGCTATTCATCTTCGGTTGTTTCCCTTATCCTT
713 GATACATTTAAATATAACAGGGTCATTAATGAAGCTATTCATCTTCGGTTGTTTCCCTTATCCTT
35533570 GATCGATATTCGTTTAAGTTAAAGTT
778 GATCGATATTCGTTTAAGTTAAAGTT
*
35533596 AAAGTTAATTTAGTATTAGCCTTCCTTGGG-TTGATCCTTGGAGTACTCACCTACTTCATTGTAA
1 -AAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAA
*
35533660 AACTATATTACAACCTGACTCGTATACTTGCAGACAGCACCTCAATTCCATTCATTTAGTTGCAA
65 AACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAA
*
35533725 TATTTACACTCTGGATGTTAGAATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGG
130 TATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGG
35533790 CAACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
195 CAACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
35533855 ATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAG
260 ATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAG
35533919 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
325 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
*
35533984 CATAGCAGATGCAAAACCAATCACTGTTGCAAGCAATCTACTATGCGATAA-CCGTTGTTTGATG
390 CATAGCAGATGCAAAACCAATCACTGTTGCAAGCAATCTACCATGCGATAACCCGTTGTTTGATG
*
35534048 AGGTAAACGAACTT-ACATCC-AGACTTA-CACCACCACCGCTATTACCAG-AACCCTTCGATGG
455 AGGTAAACGAACTTAACATCCAAG-CTTACCACCACCACCGCAATTACCAGAAACCCTTCGATGG
* *
35534109 CATGAGAAGAGCG-AACCTAA-GGATTATGCACTACCAATCTGGTGATGGTTCAA-GAGCATTAC
519 CATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAATATGGTGATGGTTCAAGGAGCATTAC
35534171 AAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATGATCCAAATAA
584 AAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCAT-ATCTAGATGATCCAAATAA
35534236 TCTGCAATTCAGA-GAACCATGACGGATGACACAAATCAACATCTAAAACGGGGCCTTC-ATTTG
648 TCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCT-AAACGGGGCCTTCAATTTG
*
35534299 TGATACATTCT-AATATAAC-GGGTCATTGA-GAAGCTATTCATC-TCGGTTGTTTCCCTTATCC
712 TGATACATT-TAAATATAACAGGGTCATTAATGAAGCTATTCATCTTCGGTTGTTTCCCTTATCC
35534360 TTGATCGATATTCGTTTAAGTTAAAGTT
776 TTGATCGATATTCGTTTAAGTTAAAGTT
35534388 AAGTTAATTTAGTATTAG-CTTCCTTGGGTTTGATCCTTGGA-TACTCACCTACTTCGTTGTAAA
1 AAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAA
35534451 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTC-ATTCCATTCATTTAGTTGCAAT
66 ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
35534515 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGG-CAAGTGTTTGGTGCCATTGCCGAGGAGGC
131 ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
* *
35534579 AACGCTACTGAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGA
196 AACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGA
*
35534644 TACAATTTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTATGGCTCGTAGT
261 TACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAGT
*
35534708 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAG-GAATAATCT-TAGGAATCGTCAATAGCC
326 AGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
35534771 ATAGCAGATGCAAAACCAATCAC
391 ATAGCAGATGCAAAACCAATCAC
35534794 CTGTACTAAT
Statistics
Matches: 1150, Mismatches: 38, Indels: 36
0.94 0.03 0.03
Matches are distributed among these distances:
786 41 0.04
787 9 0.01
788 158 0.14
789 87 0.08
790 72 0.06
791 30 0.03
792 47 0.04
793 13 0.01
794 9 0.01
795 103 0.09
796 76 0.07
797 7 0.01
798 25 0.02
800 22 0.02
801 10 0.01
802 143 0.12
803 175 0.15
804 115 0.10
805 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (803 bp):
AAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAA
ACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
ATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGC
AACGCTACTAAATTGATTTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGA
TACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAGT
AGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
ATAGCAGATGCAAAACCAATCACTGTTGCAAGCAATCTACCATGCGATAACCCGTTGTTTGATGA
GGTAAACGAACTTAACATCCAAGCTTACCACCACCACCGCAATTACCAGAAACCCTTCGATGGCA
TGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAATATGGTGATGGTTCAAGGAGCATTACAA
GGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATATCTAGATGATCCAAATAATCT
GCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAACGGGGCCTTCAATTTGTGAT
ACATTTAAATATAACAGGGTCATTAATGAAGCTATTCATCTTCGGTTGTTTCCCTTATCCTTGAT
CGATATTCGTTTAAGTTAAAGTT
Found at i:35535257 original size:429 final size:437
Alignment explanation
Indices: 35534383--35536115 Score: 2686
Period size: 429 Copynumber: 3.9 Consensus size: 437
35534373 GTTTAAGTTA
*
35534383 AAGTT-AAGTTAATTTAGTATTAGCTTCCTTGGGTTTGATCCTTGGA-TACTCACCTACTTCGTT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGG-TTGATCCTTGGAGTACTCACCTACTTCGTT
35534446 GT-AAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTC-ATTCCATTCATTTAGT
65 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
35534509 TGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGG-CAAGTGTTTGGTGCCATTGCCGA
130 TGCAATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
* *
35534573 GGAGGCAACGCTACTGAATTGATTTTAATTTTTAGTTTTATAGGATAATTTGGAAATTTATAAAT
194 GGA-GCAACGCTACTAAATTGA-TTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAAT
35534638 TGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTT-TCTTTTAGTTTCAGTGTATGGCT
257 TGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTCT-TTTTAGTTTCAGTGTAT-GCT
*
35534702 CGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAG-GAATAATCTTAGGAATCGTCAA
320 C-TAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTTAGGAATCGTCAA
35534766 TAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTA-ATTCGTTT
384 TAGCCATAGCAGATGCAAAACCAATCA-CTGTACTAATTAGATCTATATTCGTTT
35534820 AAGTTCAAGTTAATTT-GTATTAGCCTCCTTGGG-TGAT-CTT-GAGTACTCACCTACTTCGTTG
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTGATCCTTGGAGTACTCACCTACTTCGTTG
35534881 TAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTT
66 TAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTT
35534946 GCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAG
131 GCAATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAG
35535011 GAGGCAACGCTACTAAATTGA-TTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTG
195 GA-GCAACGCTACTAAATTGATTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTG
35535075 TAGATACAA-TTTTTTATTGTTACTAACA-CTTTTATTTCTTTTTAGTTTCAGTGTATGCT-T-G
259 TAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTCTTTTTAGTTTCAGTGTATGCTCTAG
35535136 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTA-AGAGAATAATCTTAGGAATCGTCAATAGCC
324 TAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTTAGGAATCGTCAATAGCC
35535200 ATAGCAGATGCAAAACCAATCACTGTACTAATTAGATCTATATTCGTTT
389 ATAGCAGATGCAAAACCAATCACTGTACTAATTAGATCTATATTCGTTT
35535249 AAGTTCAAGTTAA-TTAGTATTAGCCTCCTTGGGTTTGATCCTTGGAGTA-TCACCTAC-TCGTT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGG-TTGATCCTTGGAGTACTCACCTACTTCGTT
35535311 GTAAAAACTATATT-CAACCTGACTCGT-TACTTGCAGACACCACCTCAATTCCATTCATTTAGT
65 GTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGT
35535374 TGCAATA-TTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAG
130 TGCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAG
35535438 GAGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAT-AATT
195 GAGCAACGCTACTAAATTGA-TTTAA-TTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATT
*
35535502 GTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATG-TCT
258 GTAGATACAATTTTTTTATTGTTACTAACATCTTTTA-TTTCTTTTTAGTTTCAGTGTATGCTC-
*
35535565 TGGAGTAGTGGAATAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCA
321 T--AGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCT-TAGGAATCGTCA
*
35535630 ATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTA
383 ATAGCCATAGCAGATGCAAAACCAATCAC-TGTACTAATTAGATCTATATTCGTTT
* *
35535686 AAGTTAAAGTTAATTTAGTATAAG-CTCCTTGGGTTTGATCCTTGGTTTTTTTTTTTTTTTTTTA
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGG-TTGATCCTTGG------------------A
* ** *
35535750 GTACTGACCTACTTTTTTGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCT
47 GTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCT
*
35535815 CAATTCCATTCATTTAGTTTCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTG
112 CAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTG
* * *
35535880 ATTGGAGCCATTGCCGAGGAGCAAC-ATA--AAATTGATTTTAATTTTGAGTTTTATAGGATAAT
177 TTTGGTGCCATTGCCGAGGAGCAACGCTACTAAATTGA-TTTAATTTTGAGTTTTATAGGATAAT
*
35535942 TTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTAC-AACATCTTTTATTTTTTTTTAG
241 TTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTCTTTTTAG
* *
35536006 TTTCAGTGTAGGGCTCGTAGTAGTGGAA-AATTATAGAGCGAGTCACTGATCTAGAGAGAATAAT
306 TTTCAGTGTA-TGCTC-TAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAAT
35536070 CTTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGT
369 CTTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGT
35536116 TGCAAGCAAT
Statistics
Matches: 1222, Mismatches: 20, Indels: 92
0.92 0.01 0.07
Matches are distributed among these distances:
426 18 0.01
427 36 0.03
428 82 0.07
429 205 0.17
430 36 0.03
431 24 0.02
432 14 0.01
433 33 0.03
434 76 0.06
435 112 0.09
436 98 0.08
437 123 0.10
438 19 0.02
453 3 0.00
454 41 0.03
455 41 0.03
456 69 0.06
457 56 0.05
458 30 0.02
459 44 0.04
460 62 0.05
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (437 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTCCTTGGGTTGATCCTTGGAGTACTCACCTACTTCGTTG
TAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTT
GCAATATTTACACTCTGGATGTTAGTATGTCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGG
AGCAACGCTACTAAATTGATTTAATTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTA
GATACAATTTTTTTATTGTTACTAACATCTTTTATTTCTTTTTAGTTTCAGTGTATGCTCTAGTA
GTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTTAGGAATCGTCAATAGCCAT
AGCAGATGCAAAACCAATCACTGTACTAATTAGATCTATATTCGTTT
Found at i:35537480 original size:445 final size:447
Alignment explanation
Indices: 35536483--35537796 Score: 2266
Period size: 444 Copynumber: 2.9 Consensus size: 447
35536473 GTTTAAGTTA
* *
35536483 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35536548 TGTAAAAACTATATTACAACCTGACTCG-CATACTTGCAGACA-CACCTCAATTCCATTCATTTA
66 TGTAAAAACTATATTACAACCTGACTCGTC-TACTTGCAGACACCACCTCAATTCCATTCATTTA
*
35536611 GTTGCAATATTTACACTCTGGA-GTTAGTATGTCCGGAGGCGTCAAGTGTTTGGTGCCATTGCCG
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGGGTCAAGTGTTTGGTGCCATTGCCG
** *
35536675 AGGAGGCCGCGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35536740 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGT-TATGG
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35536804 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35536869 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
* * *
35536927 AAGTT-CAGTTAATTTAGTATTAGCCTCCATTGGGTTTGATCATTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35536991 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35537056 TTGCAATATTTACACTCT-AATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGG-GGTCAAGTGTTTGGTGCCATTGCCG
35537120 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAA-TTGGAAATTTATAA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35537184 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTT-AGTGTATGT
260 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
35537248 CTTGCAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* * *
35537313 CAATAGCCATAGTAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
*
35537371 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTGCTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
35537436 TGTAAAATCTATATTACAAACTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTTG
66 TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35537501 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGG-GGTCAAGTGTTTGGTGCCATTGCCG
*
35537566 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTTTAA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35537631 ATTGTAGATACAATTTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
260 ATTGTAGATACAA-TTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * *
35537696 ACACGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCG
324 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
*
35537761 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGT
389 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35537797 TGCAAGCAAT
Statistics
Matches: 820, Mismatches: 40, Indels: 15
0.94 0.05 0.02
Matches are distributed among these distances:
443 98 0.12
444 257 0.31
445 205 0.25
446 93 0.11
447 26 0.03
448 42 0.05
449 99 0.12
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (447 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGGGTCAAGTGTTTGGTGCCATTGCCGA
GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
TTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
Found at i:35539215 original size:810 final size:813
Alignment explanation
Indices: 35537371--35539419 Score: 3619
Period size: 810 Copynumber: 2.5 Consensus size: 813
35537361 ATATTCGTTT
* * *
35537371 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTGCTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
* * * *
35537436 TGTAAAATCTATATTACAAACTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTTG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35537501 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
* *
35537566 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTTTAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35537631 ATTGTAGATACAATTTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
261 ATTGTAGATACAA-TTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * *
35537696 ACACGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
* *
35537761 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACTCGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGT
*
35537826 TGTCTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCCCCACCGCAATTACCAGCAAAC
455 TGTCTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAAC
* *
35537891 CCTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCA
520 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATAGTTCA
*
35537956 AGGTAGTATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACATGATCTAGAT
585 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACATGATCTAGAT
* * *
35538021 GATCCAAAATAATCAGCAATGCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
650 GATCCAAAATAATCAGCAATGCAGAGGAACCATGACGGATGACACAAATCAACATATAAAACGGG
*
35538086 TCCTTCAATTTTGTGAAGCATTTAAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
715 TCCTTCAATTTTGTGAAGCATTT-AATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGCTG
35538151 TTTCCCTTATCCTTGACCGATATTCGTTTAAGTTA
779 TTTCCCTTATCCTTGACCGATATTCGTTTAAGTTA
35538186 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
*
35538251 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTGATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35538316 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
35538381 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
35538446 ATTGTAGATACAATTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
35538511 CTCGTAGTAGTGGAACAGTTATAGAGAGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35538576 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
*
35538641 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
456 GTCTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
* *
35538706 CTTCGATGGCATGTGAAGAGCGAAACCTAAGGGA-TACGCACTACCAAATCTGGTGATAGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATAGTTCAA
*
35538770 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCGTGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGA-CATGATCTAGAT
*
35538835 GATCCAAAATAATCTGCAAT-CAGAGGAACCATGACGGATGACACAAATCAACATAT-AAACGTG
650 GATCCAAAATAATCAGCAATGCAGAGGAACCATGACGGATGACACAAATCAACATATAAAACG-G
*
35538898 G-CCTTCAATTTTGTTATA-CATTCT-ATATAAC-GGGTCATTGATGAAGCTATTCATCTTCGGC
714 GTCCTTCAATTTTGTGA-AGCATT-TAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGC
* *
35538959 TGTTTCCCTTATGCTTGACCGATATTTGTTTAAGTTA
777 TGTTTCCCTTATCCTTGACCGATATTCGTTTAAGTTA
*
35538996 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
35539061 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35539126 TTGTAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
35539191 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35539256 ATTGTAGATACAATTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
35539321 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTA-AGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35539385 CAATAGCCATAGCAAATGAAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35539420 ACTAATTAGA
Statistics
Matches: 1187, Mismatches: 43, Indels: 14
0.95 0.03 0.01
Matches are distributed among these distances:
809 56 0.05
810 425 0.36
811 7 0.01
812 23 0.02
813 116 0.10
814 299 0.25
815 261 0.22
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (813 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTATTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
GTCTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATAGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACATGATCTAGATG
ATCCAAAATAATCAGCAATGCAGAGGAACCATGACGGATGACACAAATCAACATATAAAACGGGT
CCTTCAATTTTGTGAAGCATTTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGCTGTT
TCCCTTATCCTTGACCGATATTCGTTTAAGTTA
Found at i:35542666 original size:435 final size:446
Alignment explanation
Indices: 35540255--35543273 Score: 4717
Period size: 435 Copynumber: 6.9 Consensus size: 446
35540245 GTTTAAGTTA
* * *
35540255 AAGTTAAAGTTAATTTAATATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
35540320 TGTAAAAACGATCTTACAACCTGACTCGTATACTTGCAGACAGCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35540385 TTGCATATTTACACTCTGGATGTTAGAATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
131 TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
35540450 GGAGGCAACGCTACTAAATTGATTTT-ATTTTTGAGTTTTATAGGAT-ATTTGG-AATTTATAAA
196 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
35540512 TTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTA-TTTCTTTTTAGTTTCAGTGTATGGC
261 TTGTAGATACAATTTT-TTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
*
35540576 TCGTAGTAGTGGAA-TGTTATAGAGCGAGTCACTGATCTA-A-AGAATAATCTATAGGAATCGTC
325 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTC
*
35540638 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTA-ATTAATTT
390 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
*
35540694 AAGTTCAAGTTAAGTTAGTATTAGCC-TCCTTGGGTTTGATCCTTGGAGTACTC-CCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35540757 TGT-AAAACTATATTACAA-CTGACTCGTATACTTGCAGACAACACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35540820 TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGACAAGTGTTTGGTGCCATTG-CGA
131 TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
* * *
35540884 GGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTGTAGGATAATTTGGAAATTTATAAA
196 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
35540949 TTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
261 TTGTAGATACAATTTT-TTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
* * *
35541014 TCGTAGTAGTGGAATAGTTATAGAGTGAGTCACTGATCTAAAGAGAATAATCTATAGGAATCGTC
325 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTC
* *
35541079 AATAGCCATAGCAGATGCAAAACCAATCACCTCTACTAATTAGATCTATATTCGTTT
390 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
35541136 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
35541201 TGTAAAAACTAT-TTAGAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35541265 TTGCATATTT-CACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTG-CGA
131 TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
*
35541328 GGAGGCAACGCTACTAAATTGA-TTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
196 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
*
35541392 TTGTAGATACAATTTTTTATTGTTACTAACATC-TTTATTTT-TTTTTAGTTTCAGTGTATGTCT
261 TTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGCT
* * *
35541455 TGCAGTA-TGGAACAGTTATAGAGCGAGTCACTGAT-TAGAGAGAATAATCTGTAGGAATCGTCA
326 CGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCA
35541518 ATAGCCATAGCAGATGC-AAACC-ATCACCTGTACT-ATTAGATCTATATTCATTT
391 ATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
*
35541571 AAGTTCAAGTT-A-TTAGTATTAG-C-TCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35541632 TGTAAAAACTATATTACAACCTGACTCGTATACTTGC-GACACCACCTC-ATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35541695 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTG-CG
131 TTGC-ATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35541759 AGGAGGC-ACGCTACT-AATTGATTTTAA-TTTTG-GTTTT-T-GGATAATTTGGAAATTTAT-A
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
35541817 ATTGTAGATACAATTTTTTTTTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTATGAC
260 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
* * *
35541881 TCGTA-TA--GGAACAGTTAGAGAGCGAGTCAATGAT-TAGAGAGAATAATCTGTAGGAATCGTC
325 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTC
* * *
35541942 AATAGCCATAGCAGATGC-AAACGAATCACTTGTACT-ATTAGATCT-T-TTCGTTT
390 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
35541995 -AGTTC-AGTTAATTTAGT-TTAGCCTTCCTTGGGTTTGATCCTTGGAGTA-TCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
35542056 TGTAAAAGCT-TATTAGAACCTGA-TCGTGTA-TTGCAGA-ACCACCTC-ATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35542116 TTGCATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAA-TGTTTGGTGCCATTGCCGA
131 TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
*
35542179 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGGTAATTTGG-AATTTATAAA
196 GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
*
35542243 TTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTATGTCT
261 TTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGCT
* * * * *
35542307 TGCAGTATTGGAACAATTATAGAGCGAGTCACTGATCTAGAG-GAGATAATCTGTAGGAATCGTC
326 CGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGA-ATAATCTATAGGAATCGTC
35542371 AATAGCCATAGCAGATGGCAAAACCAATCACCTGTACT-ATTAGATCTATATTCATTT
390 AATAGCCATAGCAGAT-GCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
* * *
35542428 -TGTTCAAGTT-A-GTAGTATTAG-CTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35542489 TGT-AAAACTATATTA-AA-CTGACTCGTTTAC-TGCAGACA-CACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35542549 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGC-ATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35542614 TGGAGGC-ACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGG-AACTTAT--
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
35542675 ATTGTA-ATACAATTTTTTATTGTTACTAAC-TC-TTTATTTTCTTTTTAGTTCCAGTGTATGGC
260 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGC
*
35542737 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGTC
325 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTC
* * * *
35542802 AATAGCCGTAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
390 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
35542859 AAGTT-AAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35542923 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
35542988 TTGCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGC-ATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
35543053 -GGACGC-ACACTACT-AATTGATTTT-A-TTTTGAGTTTT-TATGGATAATTTGGAAATTTATA
195 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATA-GGATAATTTGGAAATTTATA
35543112 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-G
259 AATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
35543176 GACTCGTAGTAGTGGATA-A-TTAT--AGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAAT
323 G-CTCGTAGTAGTGGA-ACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAAT
*
35543237 CGTCAATAGCCATAGCAGTTGC-AAACCAATCACCTGT
386 CGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35543274 TGCAAGTAAT
Statistics
Matches: 2408, Mismatches: 98, Indels: 149
0.91 0.04 0.06
Matches are distributed among these distances:
418 15 0.01
419 22 0.01
420 35 0.01
421 43 0.02
422 17 0.01
423 27 0.01
424 41 0.02
425 175 0.07
426 58 0.02
427 49 0.02
428 27 0.01
429 45 0.02
430 60 0.02
431 223 0.09
432 166 0.07
433 81 0.03
434 104 0.04
435 249 0.10
436 63 0.03
437 88 0.04
438 148 0.06
439 220 0.09
440 45 0.02
441 85 0.04
442 88 0.04
443 83 0.03
444 90 0.04
445 61 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (446 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGA
GGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAA
TTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGGCT
CGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTATAGGAATCGTCA
ATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
Found at i:35544261 original size:428 final size:408
Alignment explanation
Indices: 35543663--35544825 Score: 1220
Period size: 428 Copynumber: 2.9 Consensus size: 408
35543653 AAGTTAAAGT
* *
35543663 TAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTATCACTACTTCATTGT-AA
1 TAAAGTT-ATTTAGTATTAGCCTT-CTTGGGTTTGATCCTTGGAGTATCTCT-CTTCGTTGTAAA
* *
35543727 AACTATTAC-ACCTGACTCGT-TACTTGCAG-ACAACACCTCAATTCCATTCATTTAGTTGCAAT
63 AAATATTACAACCTGA-TCGTGTA-TTGCAGAACCAC-CCTCAATTCCATTCATTTAGTTGCAAT
* *
35543789 ATTTACACTCTGGATGTTAGTATGTCCGGAGGC-GGTC-AGTGTTTGGTGCCATTGCCGAGCGAG
125 ATTTACACTCTGGATGTTAGTATGTTCGGAGGCAGGTCAAGTGTTTGGAGCCATTGCCGAG-G-G
*
35543852 GCAACGCTACTAAATTGATTTTATTTTTTTAGTTTATAGGATAATTT-G-ATTTATAATTGTAGA
188 GCAAC-CTACTAAATTGATTTTA-TTTTTGAGTTTATAGGAT-ATTTGGAATTTATAATTGTAGA
35543915 TACAATTTTTTTATTGTTACTAACATCTTTTTTTTTTTTTAGTTCCAGTGTATGGTCGTAGTAGT
250 TACAA-TTTTTTATTGTTACTAACATCTTTTTTTTTTTTTAGTT-CAGTGTATGGTCGTAGTAGT
35543980 GGAAAGTTATAGAGCGAGTCACTGGTCTAGAGAGAATAATCTCTAGGAATCGTCAGTAGCCATAG
313 GGAAAGTTATAGAGCGAGTCACTGG-CTAGAG-G-ATAATCTCTAGGAATCGTCAGTAGCCATAG
35544045 CAGATGAAAACGAATCATTGTACTAATTAGAT-TATATTCGTTTAAG
375 CAGAT-----C--A-C-TTGTA--AATT-GATCTATATTCGTTT-AG
35544091 TAAAGTTATTTAGTATT-GCCTTCTTGGGTTTGATCCTTGGAGTACTCTCCTGCTTCGTTGTAAA
1 TAAAGTTATTTAGTATTAGCCTTCTTGGGTTTGATCCTTGGAGTA-TCT-CT-CTTCGTTGTAAA
35544155 AAATATTACAACCTGATCGTGTATTGCAGAACCACCCTCAATTCCATTCATTTAGTTGCAATA-T
63 AAATATTACAACCTGATCGTGTATTGCAGAACCACCCTCAATTCCATTCATTTAGTTGCAATATT
35544219 TACACT-TGGGATG-TAGTATGTTCGGAGGCAGGTCAAGTGTTTGGGAGCCATTGCC--GGGGC-
128 TACACTCT-GGATGTTAGTATGTTCGGAGGCAGGTCAAGTGTTT-GGAGCCATTGCCGAGGGGCA
*
35544279 A-C-ACTATA-TGATTTTA--TTTGAGTTTATAGGATATTTGGAATTT-TAATTGT-G-T-C-AT
191 ACCTACTAAATTGATTTTATTTTTGAGTTTATAGGATATTTGGAATTTATAATTGTAGATACAAT
*
35544334 TTTTTATTG-TACT-ACATC-TTTATTTTTTTTAGTTC-GTGT-TGGT-GTAGTAGTGG--AGTT
256 TTTTTATTGTTACTAACATCTTTTTTTTTTTTTAGTTCAGTGTATGGTCGTAGTAGTGGAAAGTT
35544391 -T-G-G-GAGTCACT-GCT--AGG--AATCTCTA-GAAT-G-CAGTATGCCA-A-C-GATCACTT
321 ATAGAGCGAGTCACTGGCTAGAGGATAATCTCTAGGAATCGTCAGTA-GCCATAGCAGATCACTT
35544441 GTAAATTGATCTATATTCGTTTAG
385 GTAAATTGATCTATATTCGTTTAG
* * *
35544465 TTAAGTTA--T-GTATTAGCCTTC-T-GG---G-T--TT-GAGTA--TC-ATTCG-TGTAAAACT
1 TAAAGTTATTTAGTATTAGCCTTCTTGGGTTTGATCCTTGGAGTATCTCTCTTCGTTGTAAAA-A
35544514 ATATTACAACCTGATCGTGTATTGCAGAA-CA-CCTCAATTCCATTCATTTAGTTGCAATATTTA
65 ATATTACAACCTGATCGTGTATTGCAGAACCACCCTCAATTCCATTCATTTAGTTGCAATATTTA
*
35544577 CACTCTGGATGTTAGTATGTTC-GA-GCAGGGTCAAGTGTTTGGAGCCATTGCCGAGGCGCAACA
130 CACTCTGGATGTTAGTATGTTCGGAGGCA-GGTCAAGTGTTTGGAGCCATTGCCGAGGGGCAAC-
35544640 CTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATATTTGGAAATTTATAAATTGTAGATACA
193 CTACTAAATTGATTTT-ATTTTTGAG-TTTATAGGATATTTGG-AATTTAT-AATTGTAGATACA
* *
35544705 ATTTTTTATTGTTACTAA-ATCTTTATTTTCTTTTTAGTTTCAGTGTA-GACTCGTAGTAGTGGA
254 ATTTTTTATTGTTACTAACATCTTT-TTTTTTTTTTAG-TTCAGTGTATG-GTCGTAGTAGTGGA
*
35544768 ATA-TTATA-AGCGAGTCACTGAG-TAGAGGAT-A-CTATAGGAATCGTCA-TAGCCATAGCAG
316 A-AGTTATAGAGCGAGTCACTG-GCTAGAGGATAATCTCTAGGAATCGTCAGTAGCCATAGCAG
35544826 TTGCCAAAAC
Statistics
Matches: 650, Mismatches: 19, Indels: 168
0.78 0.02 0.20
Matches are distributed among these distances:
355 43 0.07
356 35 0.05
357 48 0.07
358 1 0.00
359 1 0.00
360 2 0.00
361 5 0.01
362 7 0.01
363 6 0.01
364 2 0.00
365 6 0.01
366 17 0.03
367 6 0.01
368 1 0.00
369 6 0.01
370 3 0.00
371 7 0.01
372 8 0.01
373 11 0.02
374 19 0.03
375 18 0.03
376 10 0.02
377 8 0.01
378 6 0.01
379 2 0.00
380 10 0.02
381 1 0.00
382 2 0.00
383 2 0.00
384 1 0.00
385 8 0.01
386 4 0.01
387 2 0.00
388 13 0.02
389 14 0.02
390 8 0.01
391 11 0.02
392 1 0.00
394 1 0.00
395 2 0.00
397 2 0.00
398 1 0.00
399 8 0.01
400 1 0.00
401 1 0.00
402 1 0.00
403 4 0.01
405 10 0.02
406 4 0.01
407 4 0.01
408 1 0.00
409 15 0.02
410 5 0.01
411 4 0.01
412 10 0.02
413 1 0.00
414 1 0.00
415 1 0.00
416 5 0.01
417 23 0.04
418 4 0.01
420 8 0.01
421 5 0.01
422 1 0.00
424 1 0.00
425 25 0.04
426 24 0.04
427 37 0.06
428 62 0.10
429 23 0.04
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (408 bp):
TAAAGTTATTTAGTATTAGCCTTCTTGGGTTTGATCCTTGGAGTATCTCTCTTCGTTGTAAAAAA
TATTACAACCTGATCGTGTATTGCAGAACCACCCTCAATTCCATTCATTTAGTTGCAATATTTAC
ACTCTGGATGTTAGTATGTTCGGAGGCAGGTCAAGTGTTTGGAGCCATTGCCGAGGGGCAACCTA
CTAAATTGATTTTATTTTTGAGTTTATAGGATATTTGGAATTTATAATTGTAGATACAATTTTTT
ATTGTTACTAACATCTTTTTTTTTTTTTAGTTCAGTGTATGGTCGTAGTAGTGGAAAGTTATAGA
GCGAGTCACTGGCTAGAGGATAATCTCTAGGAATCGTCAGTAGCCATAGCAGATCACTTGTAAAT
TGATCTATATTCGTTTAG
Found at i:35547857 original size:447 final size:441
Alignment explanation
Indices: 35546486--35548089 Score: 2593
Period size: 448 Copynumber: 3.7 Consensus size: 441
35546476 TATGCAGCTA
35546486 ACTTGCAGA-ACCACCT--ATTCC-TT-ATTTCAGTT-C-ATATTTACACT-TGG-T-TTAGTAT
1 ACTTGCAGACACCACCTCAATTCCATTCATTT-AGTTGCAATATTTACACTCTGGATGTTAGTAT
*
35546541 -TCGGAGGCGGTC-AGTGTTTGGTGC-TTGCC-AG-GGC-ACGCTCCTAA-TG-TTTT--TTTTT
65 GTCGGAGGCGGTCAAGTGTTTGGTGCATTGCCGAGAGGCAACGCTACTAATTGATTTTAATTTTT
35546596 GAG-TTTATAGG-T-A-TTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACAT
130 GAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACAT
35546657 CTTTTATTTTCTTTTT-GTTTCAGTGTATGTC-T-T-GTAGTGGAACAGTTATAGAGCGAGTCAC
195 CTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGTCAC
35546718 TGATCT--AGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAA-CAATCACTGT
260 TGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGT
35546780 ACTAATTAAGATCTATATTCGTTTAAGTTAAGTTAATTT-GTATTAGCCTCCTT-GGTTTGATCC
325 ACTAATT-AGATCTATATTCGTTTAAGTTAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCC
35546843 TT-GAGTA-TCACCTACTT-GTTGT-AAAACTATATTACAACCTGACTCGTGT
389 TTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGT
35546892 ACTTGCAGACACCA-C-CAATTCCATTCATTTAGTTGCAATATTTACA-TCTGGATGTTAGTATG
1 ACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
35546954 TCGGAGGCGGTCAAGTGTTTGGTGCATTGCCGAGA-G-AACGCTACT-ATTGATTTTAATTTTTG
66 TCGGAGGCGGTCAAGTGTTTGGTGCATTGCCGAGAGGCAACGCTACTAATTGATTTTAATTTTTG
35547016 AGTTTTATA-GATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACT-ACATC
131 AGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATC
* *
35547079 -TTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAATA--GGAACAGTTATAGAGCGAGTCACT
196 TTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACT
35547141 GATCTAGAGAG-ATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGTA
261 GATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGTA
*
35547205 CTAATTAGATC--TATTCGTTTAAGTTCAAGTT-A---AGTATTAGCCTCCCTGGGTTTGATCCT
326 CTAATTAGATCTATATTCGTTTAAGTT-AAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCT
*
35547264 TGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTAT
390 TGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGT
35547316 ACTTGCAGACA-CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
1 ACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
35547380 TCGGAGGCGAGTCAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATT
66 TCGGAGGCG-GTCAAGTGTTTGGTG-CATTGCCGA-GAGGCAACGCTACT-AATTGATTTTAATT
35547445 TTT-AGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA
127 TTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA
*
35547509 CATCTTTTATTTTCTTTTTAGTTCCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGT
192 CATCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGT
* *
35547574 CACTGATCTAGAGAGAATAATCTCTAGGAATCGTCAATAGCCATAGCAGATGCAAAACGAATCAC
257 CACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCAC
35547639 TTGTACTAATTAGATCTATATTCGTTTAAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTT
322 -TGTACTAATTAGATCTATATTCGTTTAAGTT-AAGTTAATTTAGTATTAGCC-TCCTTGGGTTT
35547704 GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGT
384 GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGT
35547762 ACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
1 ACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
35547827 TCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATT
66 T-CGGAGGCGGTCAAGTGTTTGGTG-CATTGCCGA-GAGGCAACGCTACT-AATTGATTTTAATT
35547892 TTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA
127 TTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA
* *
35547957 CATCTTTTATTTTCTTTTTAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGT
192 CATCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGT
35548022 CACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCAC
257 CACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCAC
35548087 TGT
322 TGT
35548090 TGCAAGCAAT
Statistics
Matches: 1115, Mismatches: 18, Indels: 89
0.91 0.01 0.07
Matches are distributed among these distances:
406 10 0.01
407 9 0.01
408 6 0.01
409 6 0.01
410 12 0.01
411 1 0.00
412 7 0.01
413 12 0.01
414 12 0.01
415 6 0.01
416 12 0.01
417 4 0.00
419 22 0.02
420 33 0.03
421 41 0.04
422 88 0.08
423 53 0.05
424 61 0.05
425 31 0.03
426 25 0.02
427 15 0.01
428 9 0.01
429 2 0.00
430 1 0.00
431 9 0.01
432 9 0.01
433 65 0.06
434 5 0.00
435 35 0.03
437 35 0.03
438 47 0.04
439 15 0.01
441 19 0.02
442 1 0.00
445 10 0.01
446 78 0.07
447 115 0.10
448 194 0.17
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (441 bp):
ACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATG
TCGGAGGCGGTCAAGTGTTTGGTGCATTGCCGAGAGGCAACGCTACTAATTGATTTTAATTTTTG
AGTTTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATC
TTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACT
GATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACTGTA
CTAATTAGATCTATATTCGTTTAAGTTAAGTTAATTTAGTATTAGCCTCCTTGGGTTTGATCCTT
GGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGT
Found at i:35549454 original size:448 final size:448
Alignment explanation
Indices: 35548480--35550682 Score: 4112
Period size: 448 Copynumber: 4.9 Consensus size: 448
35548470 GTTTAAGTTA
*
35548480 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35548545 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35548610 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35548675 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35548740 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35548804 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
35548869 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
35548927 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35548992 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35549057 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35549122 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35549187 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
*
35549252 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35549317 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
35549375 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35549440 TGTAAAAACTATATTAGAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
35549505 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35549570 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35549635 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
35549700 CTTGCAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
35549765 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
35549823 AAGTTCAAGTTAA-TTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
35549887 TGT-AAAACTATATTACAACCTGACTCGTATACTTGCAGACA-CACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35549950 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
35550015 AGGAGGCAACGCTACTAAATTGATTTTAA-TTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
*
35550079 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTAT-G
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
35550143 -TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
35550207 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
35550265 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
35550330 TGTAAAAACTATATTACAACCTGACTCGTGTAC-TGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
35550394 TTGCAATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAAGTGTTT-G-GCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
35550456 AGGA-GCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
35550520 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
35550584 ACTCGTAGTAGTGGAACA-TTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
326 -CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
35550648 TCAATAGCCATAGCAG-TGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
35550683 TGCAAGCAAT
Statistics
Matches: 1721, Mismatches: 27, Indels: 22
0.97 0.02 0.01
Matches are distributed among these distances:
440 24 0.01
441 127 0.07
442 193 0.11
443 96 0.06
444 178 0.10
445 115 0.07
446 37 0.02
447 324 0.19
448 627 0.36
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:35562804 original size:30 final size:30
Alignment explanation
Indices: 35562770--35562866 Score: 82
Period size: 30 Copynumber: 3.4 Consensus size: 30
35562760 TCAAAACAAT
*
35562770 AAATTATTGAAAAGATTCAAATCATATAAG
1 AAATTATTGAAAAGATTCAAATCATATAAC
*
35562800 AAATTATTGCAAA-ATT--AATCA-AT--C
1 AAATTATTGAAAAGATTCAAATCATATAAC
** * *
35562824 TCA-TATTCAAAAGATTCAAATCATATAAT
1 AAATTATTGAAAAGATTCAAATCATATAAC
35562853 AAATTATTGCAAAA
1 AAATTATTG-AAAA
35562867 TCAATCAATC
Statistics
Matches: 49, Mismatches: 10, Indels: 15
0.66 0.14 0.20
Matches are distributed among these distances:
23 7 0.14
24 4 0.08
26 7 0.14
27 7 0.14
29 4 0.08
30 16 0.33
31 4 0.08
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (30 bp):
AAATTATTGAAAAGATTCAAATCATATAAC
Found at i:35562842 original size:53 final size:53
Alignment explanation
Indices: 35562774--35562880 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
35562764 AACAATAAAT
* *
35562774 TATTGAAAAGATTCAAATCATATAAGAAATTATTGCAAAATTAATCAATCTCA
1 TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
*
35562827 TATTCAAAAGATTCAAATCATATAATAAATTATTGCAAAATCAATCAATCTCA
1 TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
35562880 T
1 T
35562881 GCATATTTTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.33
Consensus pattern (53 bp):
TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATCTCA
Found at i:35566886 original size:25 final size:26
Alignment explanation
Indices: 35566825--35566925 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
35566815 ACATATTTTC
* *
35566825 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACCGGGGGTAAAATCG
*
35566851 TCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCGGGGGTAAAATCG
* *
35566877 TCAAAA-TTTACCGAGGGTAAAATTG
1 TCAAAATTTTACCGGGGGTAAAATCG
* **
35566902 TCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCGGGGGTAAAAT
35566926 AGGGATGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 22 0.34
26 42 0.66
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
TCAAAATTTTACCGGGGGTAAAATCG
Found at i:35566906 original size:51 final size:52
Alignment explanation
Indices: 35566825--35566925 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 52
35566815 ACATATTTTC
*
35566825 TCAAAATTTTACCAGGGGTAAAATCATCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
** *
35566877 TCAAAA-TTTACC-GAGGGTAAAATTGTCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCAG-GGGTAAAATCATCAAAATATTACTGGGGGTAAAAT
35566926 AGGGATGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.02
51 37 0.84
52 6 0.14
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (52 bp):
TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
Found at i:35570838 original size:21 final size:21
Alignment explanation
Indices: 35570809--35570849 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35570799 ACCTAGTGTC
*
35570809 GTGATATAGCAGGGACATGTA
1 GTGACATAGCAGGGACATGTA
*
35570830 GTGACATAGTAGGGACATGT
1 GTGACATAGCAGGGACATGT
35570850 CACGACATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.34, T:0.24
Consensus pattern (21 bp):
GTGACATAGCAGGGACATGTA
Found at i:35570856 original size:21 final size:21
Alignment explanation
Indices: 35570814--35570861 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
35570804 GTGTCGTGAT
*
35570814 ATAGCAGGGACATGTAGTGAC
1 ATAGCAGGGACATGTAGCGAC
*
35570835 ATAGTAGGGACATGTCA-CGAC
1 ATAGCAGGGACATGT-AGCGAC
35570856 ATAGCA
1 ATAGCA
35570862 TGCAGTTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (21 bp):
ATAGCAGGGACATGTAGCGAC
Found at i:35572671 original size:22 final size:22
Alignment explanation
Indices: 35572633--35572675 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
35572623 ACTACCATGC
35572633 AAACAATTCATCAAGCATCAACG
1 AAACAATTCATCAAGCA-CAACG
35572656 AAACAA-TCAT-ATAGCACAAC
1 AAACAATTCATCA-AGCACAAC
35572676 CTCATCAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.51, C:0.26, G:0.07, T:0.16
Consensus pattern (22 bp):
AAACAATTCATCAAGCACAACG
Found at i:35579326 original size:64 final size:65
Alignment explanation
Indices: 35579202--35579375 Score: 183
Period size: 64 Copynumber: 2.7 Consensus size: 65
35579192 CTGCTAGGAA
* * *
35579202 ATTAGACATGGGGTATACTGTATAAGACCATAGCTCGGCTATGGCAACTGGCCAAATCTGCCA-A
1 ATTAAACATGGGGTATACTGTGTAAGACCATAGCTCGGCTATGACAACTGG-CAAATCTGCCAGA
35579266 -
65 C
* * * *
35579266 GTTAAACATGGGGTATATTGTGTAAGACCATAGCTCGGTTATGACAACATGTG-AAGTCTGCCAG
1 ATTAAACATGGGGTATACTGTGTAAGACCATAGCTCGGCTATGACAAC-TG-GCAAATCTGCCA-
35579330 GAC
63 GAC
* * * * *
35579333 ATTAAATAAGGGCTATACTGTGTAAGACCATAGTTGGGCTATG
1 ATTAAACATGGGGTATACTGTGTAAGACCATAGCTCGGCTATG
35579376 GTTTCAGATA
Statistics
Matches: 90, Mismatches: 15, Indels: 7
0.80 0.13 0.06
Matches are distributed among these distances:
64 51 0.57
65 2 0.02
66 2 0.02
67 35 0.39
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (65 bp):
ATTAAACATGGGGTATACTGTGTAAGACCATAGCTCGGCTATGACAACTGGCAAATCTGCCAGAC
Found at i:35591760 original size:41 final size:41
Alignment explanation
Indices: 35591710--35591868 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 41
35591700 TAATACACCT
* *
35591710 GCACGAAGCCTGATA-AAATACACTAGCACGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAA-ACACTAGCATGAAGCCTGCTAG
* *
35591751 GCACAAAGCCTGATATAAAACA-TCGATATGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAAACACTAG-CATGAAGCCTGCTAG
* * * *
35591792 GCACAAAGCTTGATATAAAACATTGGCAAGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAAACACTAGCATGAAGCCTGCTAG
* * *
35591833 GCACAAAGCCTAATATAATACACCAGCATGAAGCCT
1 GCACAAAGCCTGATATAAAACACTAGCATGAAGCCT
35591869 ACTGGACTCA
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.02
41 93 0.93
42 5 0.05
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (41 bp):
GCACAAAGCCTGATATAAAACACTAGCATGAAGCCTGCTAG
Found at i:35598822 original size:41 final size:41
Alignment explanation
Indices: 35598776--35598934 Score: 205
Period size: 41 Copynumber: 3.9 Consensus size: 41
35598766 GGGTGTTACA
* *
35598776 ACCAAAGTACAAATAAGGGCACGTATGTGTAATTCAGGGGT
1 ACCAAAGTACAAATAGGGGCACGTATGTGAAATTCAGGGGT
* * **
35598817 ACCAAAGTACAAACAGGGGCACGTATGTGTAATTTTGGGGT
1 ACCAAAGTACAAATAGGGGCACGTATGTGAAATTCAGGGGT
* * *
35598858 ACCGAAGTACAAATAGGGGAACATATGTGAAATTCAGGGGT
1 ACCAAAGTACAAATAGGGGCACGTATGTGAAATTCAGGGGT
* *
35598899 ACCGAAGTAC-AA-AGGGGCATGTATGTGAAATTCAGG
1 ACCAAAGTACAAATAGGGGCACGTATGTGAAATTCAGG
35598935 AAATAATTAA
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
39 21 0.20
40 2 0.02
41 81 0.78
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (41 bp):
ACCAAAGTACAAATAGGGGCACGTATGTGAAATTCAGGGGT
Found at i:35602897 original size:9 final size:9
Alignment explanation
Indices: 35602883--35602961 Score: 122
Period size: 9 Copynumber: 8.8 Consensus size: 9
35602873 TTTGGTTAAA
35602883 AATTACCCG
1 AATTACCCG
35602892 AATTACCCG
1 AATTACCCG
35602901 AATTACCCG
1 AATTACCCG
35602910 AATTACCCG
1 AATTACCCG
*
35602919 AATTAACCG
1 AATTACCCG
*
35602928 AATTAACCG
1 AATTACCCG
*
35602937 AATTAACCG
1 AATTACCCG
*
35602946 AATTAACCG
1 AATTACCCG
35602955 AATTACC
1 AATTACC
35602962 GAAAAATACC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:35603512 original size:18 final size:18
Alignment explanation
Indices: 35603491--35603526 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
35603481 ATACTCGAAT
* *
35603491 TTTTTTTACTTCATATAC
1 TTTTTTTAATTCAAATAC
35603509 TTTTTTTAATTCAAATAC
1 TTTTTTTAATTCAAATAC
35603527 AATTGAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTTTAATTCAAATAC
Found at i:35605627 original size:15 final size:16
Alignment explanation
Indices: 35605598--35605627 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35605588 CAAACATGCT
35605598 TTAACACATTATCAAA
1 TTAACACATTATCAAA
35605614 TTAACACA-TATCAA
1 TTAACACATTATCAA
35605628 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:35608597 original size:19 final size:19
Alignment explanation
Indices: 35608573--35608633 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
35608563 ATAAGAGAAG
35608573 AGAATAAGAAGGGGAAAAA
1 AGAATAAGAAGGGGAAAAA
35608592 AGAATAA-AAGAGAAGGAAAGAA
1 AGAATAAGAAG-G--GGAAA-AA
*
35608614 GAGAATGAGAA-GGGAAAAA
1 -AGAATAAGAAGGGGAAAAA
35608633 A
1 A
35608634 AAGATAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
18 4 0.11
19 10 0.29
20 5 0.14
21 5 0.14
22 3 0.09
23 6 0.17
24 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (19 bp):
AGAATAAGAAGGGGAAAAA
Found at i:35608615 original size:42 final size:43
Alignment explanation
Indices: 35608568--35608648 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
35608558 AATAGATAAG
*
35608568 AGAAGAGAATAAGAAGGG-GAAAAAAGAATAAAA-GAGAAGGAA
1 AGAAGAGAATAAGAAGGGAAAAAAAAG-ATAAAAGGAGAAGGAA
*
35608610 AGAAGAGAATGAGAAGGGAAAAAAAAGATAAAAGGAGAA
1 AGAAGAGAATAAGAAGGGAAAAAAAAGATAAAAGGAGAA
35608649 AATGAAGGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
42 23 0.66
43 12 0.34
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (43 bp):
AGAAGAGAATAAGAAGGGAAAAAAAAGATAAAAGGAGAAGGAA
Found at i:35610857 original size:14 final size:14
Alignment explanation
Indices: 35610834--35610864 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35610824 CTATCGATTT
*
35610834 ATATACATGCAAAA
1 ATATAAATGCAAAA
35610848 ATATAAATGCAAAA
1 ATATAAATGCAAAA
35610862 ATA
1 ATA
35610865 CATATTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.23
Consensus pattern (14 bp):
ATATAAATGCAAAA
Found at i:35610904 original size:27 final size:28
Alignment explanation
Indices: 35610847--35610938 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
35610837 TACATGCAAA
*
35610847 AATATAAATGCAAAAATACATA-TTTGGT
1 AATATAAATGCAAAAATACAAACTTT-GT
* *
35610875 AATATAAATG-AAAAATAAAAACTTTAT
1 AATATAAATGCAAAAATACAAACTTTGT
*
35610902 AATATAAATGCAAAATTACAAACTTTGT
1 AATATAAATGCAAAAATACAAACTTTGT
35610930 AATATAAAT
1 AATATAAAT
35610939 TAGATGCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 20 0.36
28 36 0.64
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (28 bp):
AATATAAATGCAAAAATACAAACTTTGT
Found at i:35611645 original size:51 final size:51
Alignment explanation
Indices: 35611531--35611797 Score: 446
Period size: 51 Copynumber: 5.3 Consensus size: 51
35611521 CTTACGTATG
*
35611531 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
35611581 ATCACTTGCCACTTGTCACTGATCAGATAGGTGTAGCTAAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
35611632 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAACACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
35611683 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* * *
35611734 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
35611785 ATCACTTGTCACT
1 ATCACTTGTCACT
35611798 GATCAGAAGT
Statistics
Matches: 204, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
50 35 0.17
51 169 0.83
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
Found at i:35613256 original size:15 final size:17
Alignment explanation
Indices: 35613219--35613253 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
35613209 TCAAGAACAT
35613219 AGAACCTTATATAATAA
1 AGAACCTTATATAATAA
35613236 AGAACCTTATATAATAA
1 AGAACCTTATATAATAA
35613253 A
1 A
35613254 ACCCTACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (17 bp):
AGAACCTTATATAATAA
Found at i:35613685 original size:4 final size:4
Alignment explanation
Indices: 35613676--35613701 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
35613666 AATAAACTAA
35613676 TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TA
35613702 ATCTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:35618124 original size:18 final size:18
Alignment explanation
Indices: 35618098--35618133 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35618088 AAATACAAAC
*
35618098 TTTGTAATATAAATGCAA
1 TTTGAAATATAAATGCAA
35618116 TTTGAAATATAAATGCAA
1 TTTGAAATATAAATGCAA
35618134 AAATACAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (18 bp):
TTTGAAATATAAATGCAA
Found at i:35620987 original size:49 final size:47
Alignment explanation
Indices: 35620754--35621928 Score: 2000
Period size: 47 Copynumber: 24.7 Consensus size: 47
35620744 TTAGGATTCT
* *
35620754 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
35620801 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35620848 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35620895 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
35620942 GTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35620991 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621038 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621087 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621136 ATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35621182 ATGTCATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621229 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35621276 GTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621324 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621371 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621420 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621467 ATGTGATGAATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35621513 GTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621561 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621608 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
35621657 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
35621706 ATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
35621753 ATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
35621800 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
35621847 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
35621894 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
35621929 TCCCGAAGGG
Statistics
Matches: 1083, Mismatches: 28, Indels: 34
0.95 0.02 0.03
Matches are distributed among these distances:
46 116 0.11
47 595 0.55
48 65 0.06
49 307 0.28
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:35622103 original size:37 final size:37
Alignment explanation
Indices: 35622047--35622125 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
35622037 CCGAGCTCTA
* * * **
35622047 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
35622084 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
35622121 AAGAC
1 AAGAC
35622126 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:35624291 original size:3 final size:3
Alignment explanation
Indices: 35624283--35624325 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
35624273 ATGTGAGGTA
*
35624283 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
35624326 AGATGAGTGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:35624744 original size:37 final size:39
Alignment explanation
Indices: 35624685--35624780 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
35624675 TGGATAGATT
* * * *
35624685 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
35624722 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
35624761 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
35624781 TACTGGAGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:35636436 original size:14 final size:14
Alignment explanation
Indices: 35636417--35636443 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35636407 AGTATTATTT
35636417 ATTAATTAATTTTA
1 ATTAATTAATTTTA
35636431 ATTAATTAATTTT
1 ATTAATTAATTTT
35636444 TCAATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATTAATTTTA
Found at i:35637405 original size:6 final size:6
Alignment explanation
Indices: 35637394--35637431 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
35637384 GATTATTTTA
*
35637394 TTATTT TTATTT ATT-GTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT -TTATTT TTATTT TTATTT TTATTT TT
35637432 GCAAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 2 0.07
6 24 0.86
7 2 0.07
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:35644733 original size:23 final size:23
Alignment explanation
Indices: 35644707--35644753 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
35644697 TGGTTTATGC
* *
35644707 TAATATTGTTACCGTATTGATTT
1 TAATATTGTTACCATACTGATTT
35644730 TAATATTGTTACCATACTGATTT
1 TAATATTGTTACCATACTGATTT
35644753 T
1 T
35644754 GATACTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.51
Consensus pattern (23 bp):
TAATATTGTTACCATACTGATTT
Found at i:35648770 original size:27 final size:26
Alignment explanation
Indices: 35648740--35648865 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
35648730 AAATTGTACA
35648740 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
35648767 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
35648794 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
35648821 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
35648849 GCACTAAGTGTGCGATT
1 GCACTAAGTGTGCGATT
35648866 TGATTGTATA
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 59 0.70
28 23 0.27
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:35648804 original size:54 final size:54
Alignment explanation
Indices: 35648739--35648865 Score: 152
Period size: 54 Copynumber: 2.3 Consensus size: 54
35648729 TAAATTGTAC
* **
35648739 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAAT-GAA-TATG-
1 AGCACTAAGTGTGCGATT-GACCATGCGGCACTAAGTGTGCG-AATCGAACTATGT
* *
35648792 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
35648848 AGCACTAAGTGTGCGATT
1 AGCACTAAGTGTGCGATT
35648866 TGATTGTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
53 3 0.05
54 39 0.61
55 21 0.33
56 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACCATGCGGCACTAAGTGTGCGAATCGAACTATGT
Found at i:35659190 original size:17 final size:17
Alignment explanation
Indices: 35659170--35659207 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
35659160 ATCGCCGTCG
35659170 CAAGTCCATCACTACCA
1 CAAGTCCATCACTACCA
* *
35659187 CAAGTCCATCTCTATCA
1 CAAGTCCATCACTACCA
35659204 CAAG
1 CAAG
35659208 CTTACAGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.37, G:0.08, T:0.21
Consensus pattern (17 bp):
CAAGTCCATCACTACCA
Found at i:35660996 original size:20 final size:19
Alignment explanation
Indices: 35660958--35660996 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35660948 GTAAGGCAGT
*
35660958 ATTTTGCATGAATTTTTAA
1 ATTTTGCAAGAATTTTTAA
*
35660977 ATTTTGCAAGTATGTTTTAA
1 ATTTTGCAAGAAT-TTTTAA
35660997 TCTTTTCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
ATTTTGCAAGAATTTTTAA
Found at i:35671875 original size:34 final size:34
Alignment explanation
Indices: 35671827--35671896 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
35671817 CCTACACGAT
*
35671827 TATATACGTCTGGCCATACGTATTGAGGGTTAAG
1 TATAGACGTCTGGCCATACGTATTGAGGGTTAAG
35671861 TATAGACGTCTGGCCATACGTATTGAGGGTTAAG
1 TATAGACGTCTGGCCATACGTATTGAGGGTTAAG
35671895 TA
1 TA
35671897 GATACATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (34 bp):
TATAGACGTCTGGCCATACGTATTGAGGGTTAAG
Found at i:35674301 original size:40 final size:40
Alignment explanation
Indices: 35674152--35674294 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
35674142 AATGATGTCC
* * * * *
35674152 GGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCA
*
35674192 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCA
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCA
* * *
35674232 GGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCA
*
35674272 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
35674295 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 74 0.86
41 11 0.13
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCA
Found at i:35681524 original size:19 final size:19
Alignment explanation
Indices: 35681502--35681539 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35681492 TCAATCATCC
35681502 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
35681521 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
35681540 AATATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:35682688 original size:15 final size:16
Alignment explanation
Indices: 35682668--35682700 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
35682658 TAACTTATTC
35682668 TTTCAAGTT-ATTTAT
1 TTTCAAGTTGATTTAT
*
35682683 TTTCAATTTGATTTAT
1 TTTCAAGTTGATTTAT
35682699 TT
1 TT
35682701 CTAACATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (16 bp):
TTTCAAGTTGATTTAT
Found at i:35688952 original size:19 final size:19
Alignment explanation
Indices: 35688930--35688967 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35688920 TCAATCCTCC
35688930 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
35688949 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
35688968 ACTATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:35692479 original size:38 final size:37
Alignment explanation
Indices: 35692410--35692482 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
35692400 TTTTCATAAT
* *
35692410 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
35692447 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
35692483 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:35692513 original size:23 final size:22
Alignment explanation
Indices: 35692470--35692513 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
35692460 TTTCAAGTCA
35692470 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
35692493 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
35692514 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:35692687 original size:23 final size:23
Alignment explanation
Indices: 35692612--35692687 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
35692602 ATAAGTGCCA
*
35692612 CACTGGTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
35692635 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
35692658 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
35692681 CACTGAT
1 CACTGAT
35692688 CAATAACACC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:35693170 original size:30 final size:30
Alignment explanation
Indices: 35693136--35693194 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
35693126 TCCTTGACTC
35693136 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
35693166 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTGGCAAAATTACAATTTTGCCCC
35693195 AAAGCTCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:35694201 original size:14 final size:14
Alignment explanation
Indices: 35694174--35694208 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
35694164 TAGCCTAGAT
35694174 TAATTAATTTAACA
1 TAATTAATTTAACA
35694188 TAACTTAA-TTAACA
1 TAA-TTAATTTAACA
35694202 TAATTAA
1 TAATTAA
35694209 CCTTTTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 12 0.60
15 4 0.20
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATTAATTTAACA
Done.