Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 125 of 199
Found at i:36012993 original size:14 final size:14
Alignment explanation
Indices: 36012971--36013003 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
36012961 AAAATATTTA
*
36012971 ATTTATCAAAAATT
1 ATTTTTCAAAAATT
36012985 ATTTTTCAAAAATT
1 ATTTTTCAAAAATT
36012999 ATTTT
1 ATTTT
36013004 CATCCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTCAAAAATT
Found at i:36016045 original size:44 final size:43
Alignment explanation
Indices: 36015997--36016216 Score: 135
Period size: 47 Copynumber: 4.9 Consensus size: 43
36015987 AATATTAATT
36015997 ATTTTAAATTGTATAAATTCATATAAGAAAATTTATTATCAAGA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAGA
* * * * * **
36016041 ATTTTATGAAATTATATA-TCATTATTAA-ATTATATTTAATATTAATT
1 ATTTTA--AATTTATAAATTCA-TA-TAAGA--AAATTTATTATCAAGA
36016088 ATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCAAGA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAGA
* * * * **
36016132 ATTTTATGAAATTATATATT-ATTATTAA-ATTATATTTAATAAT-AATT
1 ATTTTA--AATTTATAAATTCA-TA-TAAGA--AAATTT-ATTATCAAGA
*
36016179 ATTTTAAATTATACAAATTCATATAAGAAAATTTATTA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA
36016217 GTTATAATTA
Statistics
Matches: 132, Mismatches: 25, Indels: 39
0.67 0.13 0.20
Matches are distributed among these distances:
43 3 0.02
44 32 0.24
45 30 0.23
46 29 0.22
47 34 0.26
48 4 0.03
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (43 bp):
ATTTTAAATTTATAAATTCATATAAGAAAATTTATTATCAAGA
Found at i:36016060 original size:91 final size:91
Alignment explanation
Indices: 36015918--36016216 Score: 526
Period size: 91 Copynumber: 3.3 Consensus size: 91
36015908 TTGATTTTAG
* * *
36015918 TAAATTCGTATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
*
36015983 ATTTAATATTAATTATTTTAAATTGTA
65 ATTTAATATTAATTATTTTAAATTATA
36016010 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
36016075 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
36016101 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
36016166 TTTAATAATAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
36016192 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
36016217 GTTATAATTA
Statistics
Matches: 200, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
91 185 0.93
92 15 0.08
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:36016361 original size:120 final size:120
Alignment explanation
Indices: 36016232--36016649 Score: 721
Period size: 120 Copynumber: 3.5 Consensus size: 120
36016222 AATTATTTTC
* * *
36016232 AATTTTATTAAATCATATGTTTTAATTAAAATATATTTAATATTAATTAT-TTAAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
* *
36016296 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATCTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
36016352 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
* *
36016417 ATAGTATCATATATTATAATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
36016472 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
36016537 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
36016592 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
36016650 ATGATTAAAT
Statistics
Matches: 284, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
120 276 0.97
121 8 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:36016381 original size:18 final size:17
Alignment explanation
Indices: 36016353--36016387 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36016343 ATTATTAAGA
*
36016353 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
36016370 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36016388 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36016466 original size:66 final size:65
Alignment explanation
Indices: 36016390--36016579 Score: 197
Period size: 66 Copynumber: 3.1 Consensus size: 65
36016380 AAATATATTT
36016390 AATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAA
1 AATAATAATTATGTTAAATTAT-TTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAA
36016455 G
65 G
* * * * * *
36016456 AATATTAATTAT-TAAGAATT-TTATTA-A--ATTATATATTTTAA-TT-A-T-AA-T-ATAT-T
1 AATAATAATTATGTTA-AATTATTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAA
*
36016509 T
65 G
*
36016510 AATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATAATAATTATGTTAAATTAT-TTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAA
36016575 G
65 G
36016576 AATA
1 AATA
36016580 TTGATTATTA
Statistics
Matches: 95, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
54 15 0.16
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 12 0.13
60 4 0.04
61 13 0.14
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 19 0.20
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (65 bp):
AATAATAATTATGTTAAATTATTTTTATAGTATCATATATTATAATTTGAGTAAATTCATATAAG
Found at i:36016507 original size:16 final size:16
Alignment explanation
Indices: 36016486--36016532 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
36016476 TTATTAAATT
36016486 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
36016502 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
36016517 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
36016533 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:36016627 original size:16 final size:16
Alignment explanation
Indices: 36016606--36016647 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36016596 TTATTAAATT
*
36016606 ATATATTTTAATTATA
1 ATATATTTTAATAATA
36016622 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
36016637 AT-TATGTTTAA
1 ATATAT-TTTAA
36016648 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:36016632 original size:15 final size:15
Alignment explanation
Indices: 36016597--36016638 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36016587 TTAAGAATTT
*
36016597 TATTAAATTAT-ATA
1 TATTTAATTATAATA
36016611 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
36016625 TATTTAATAATAAT
1 TATTTAATTATAAT
36016639 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:36016887 original size:16 final size:16
Alignment explanation
Indices: 36016868--36016914 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
36016858 GCTATTACGT
36016868 CTCTATTCCATTACAC
1 CTCTATTCCATTACAC
*
36016884 CTCTATTCCATTACGC
1 CTCTATTCCATTACAC
*
36016900 CTCTATTCCAATACA
1 CTCTATTCCATTACA
36016915 GCGAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.26, C:0.36, G:0.02, T:0.36
Consensus pattern (16 bp):
CTCTATTCCATTACAC
Found at i:36025571 original size:2 final size:2
Alignment explanation
Indices: 36025564--36025610 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
36025554 TCCATCTACT
36025564 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
36025606 TC TC T
1 TC TC T
36025611 TCCACTTGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:36029519 original size:6 final size:6
Alignment explanation
Indices: 36029508--36029542 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
36029498 ATCAGAAAGC
36029508 GAGGGT GAGGGT GAGGGT GAGGGT GAGGGT GAGGG
1 GAGGGT GAGGGT GAGGGT GAGGGT GAGGGT GAGGG
36029543 GGAAAGAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.69, T:0.14
Consensus pattern (6 bp):
GAGGGT
Found at i:36034285 original size:25 final size:25
Alignment explanation
Indices: 36034194--36034287 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 25
36034184 TCATGTACAT
36034194 GTATGCTCAT-ATGAGCTGTGAAAT-G
1 GTATGCTC-TCATGAGCTGT-AAATCG
* * *
36034219 GTATGCTCAC-TCGAGCTGTAGATCA
1 GTATGCTCTCAT-GAGCTGTAAATCG
* ** *
36034244 GTATGCTCTTACAAGCTATAAATCG
1 GTATGCTCTCATGAGCTGTAAATCG
36034269 GTATGCTCTCATGAGCTGT
1 GTATGCTCTCATGAGCTGT
36034288 GGAGTATCCG
Statistics
Matches: 51, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
24 4 0.08
25 47 0.92
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (25 bp):
GTATGCTCTCATGAGCTGTAAATCG
Found at i:36036530 original size:25 final size:25
Alignment explanation
Indices: 36036502--36036558 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
36036492 ACTTGTGAAG
36036502 CCTTTGTGGTGAGTCACCTATAAAA
1 CCTTTGTGGTGAGTCACCTATAAAA
* * *
36036527 CCTTTGTGGTGAGTCACTTGTAAAG
1 CCTTTGTGGTGAGTCACCTATAAAA
36036552 CCTTTGT
1 CCTTTGT
36036559 TATAATAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (25 bp):
CCTTTGTGGTGAGTCACCTATAAAA
Found at i:36037893 original size:21 final size:21
Alignment explanation
Indices: 36037867--36037909 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
36037857 TTTGGGTGGA
**
36037867 TCAGCTCTTGCGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
36037888 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
36037909 T
1 T
36037910 GGCGTGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.37
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:36045584 original size:296 final size:279
Alignment explanation
Indices: 36045241--36045813 Score: 853
Period size: 296 Copynumber: 2.0 Consensus size: 279
36045231 TGGGGGGTTA
*
36045241 GGAGGGGAGGGGAGTAAAAGTTTTGGGGGGAAAGTGGGAATGAGTAAAAGTTTTGAGGGAAAAGT
1 GGAGGGGAGGGGAGTAAAAGTTTTGGGGGGAAAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
* *
36045306 AAAAAGGCTTGGGAGTTTGGGGTAAAAATGTAAAATATTATAGTTTGATATTCGAATTATTCGAG
66 AAAAAGGCTTGAGAGTTTGGGGTAAAAATGTAAAATATTATAGTTTGATATTCAAATTATTCGAG
*
36045371 TTATTCGAATTCGAAAACTCAACTCAATTCGAACTCGAAATTCGAAAAAAAAATTCGAGTTGATT
131 TTATTCGAATTCGAAAACCCAACTCAATTCGAACTCGAAATTCG-AAAAAAAA----A----ATT
* * *
36045436 CGAGTAACTCGATTAACTTGAATAACTCGATTCGTTTAACTCGAAATTAGAAATTT-TTTTCGAT
187 C--G--A-T---TT-ACTCGAATAACTCGATTCGTTTAACTCAAAATT-CAAATTTGTTTTCGAT
*
36045500 TTTTTCGAGTCGAATCGAGTTTTGCTCACCCCTAGTTG
242 TTTTTCGAGTCGAATCGAATTTTGCTCACCCCTAGTTG
*
36045538 GGAGGGGAGGGGAGTAAAAGTTTT-GGGGGAAAGTGGGAAGGAGTAAACGTTTTGAGGGAAAAGT
1 GGAGGGGAGGGGAGTAAAAGTTTTGGGGGGAAAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
*
36045602 AAAAAGGTTTGAGAGTTTGGGGTAAAAATGTAAAATATTATAGTTTGATATTCAAATTATTCGAG
66 AAAAAGGCTTGAGAGTTTGGGGTAAAAATGTAAAATATTATAGTTTGATATTCAAATTATTCGAG
* *
36045667 TTATTCGAATTCGAAAACCCAACTCGATTCGAACTCGAAATTTGAAAAAAAAAATTCGATTTACT
131 TTATTCGAATTCGAAAACCCAACTCAATTCGAACTCGAAATTCGAAAAAAAAAATTCGATTTACT
36045732 CGAATAACTCGATTCGTTTAACTCAAAATTCAAATTTGTTTTCGATTTTTTCGAGTCGAATCGAA
196 CGAATAACTCGATTCGTTTAACTCAAAATTCAAATTTGTTTTCGATTTTTTCGAGTCGAATCGAA
36045797 TTTTGCTCACCCCTAGT
261 TTTTGCTCACCCCTAGT
36045814 CTTGGCAAGT
Statistics
Matches: 263, Mismatches: 12, Indels: 21
0.89 0.04 0.07
Matches are distributed among these distances:
277 6 0.02
278 74 0.28
279 2 0.01
282 1 0.00
283 1 0.00
285 1 0.00
287 4 0.02
291 1 0.00
295 8 0.03
296 141 0.54
297 24 0.09
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (279 bp):
GGAGGGGAGGGGAGTAAAAGTTTTGGGGGGAAAGTGGGAAGGAGTAAAAGTTTTGAGGGAAAAGT
AAAAAGGCTTGAGAGTTTGGGGTAAAAATGTAAAATATTATAGTTTGATATTCAAATTATTCGAG
TTATTCGAATTCGAAAACCCAACTCAATTCGAACTCGAAATTCGAAAAAAAAAATTCGATTTACT
CGAATAACTCGATTCGTTTAACTCAAAATTCAAATTTGTTTTCGATTTTTTCGAGTCGAATCGAA
TTTTGCTCACCCCTAGTTG
Found at i:36050460 original size:21 final size:21
Alignment explanation
Indices: 36050434--36050476 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
36050424 ATTTGGTGGA
*
36050434 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
36050455 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
36050476 T
1 T
36050477 GGCGTGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.19, T:0.37
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:36051784 original size:50 final size:50
Alignment explanation
Indices: 36051705--36052088 Score: 380
Period size: 50 Copynumber: 7.7 Consensus size: 50
36051695 GGGTGTTACA
* *
36051705 TTTGTGGTGAGTCACCTGTAAAG-CTCTTGTGACAATTTACTTGGGAAGCC
1 TTTGTGGTGAGTCACCTGTAAAGCCT-TTGTGGCGATTTACTTGGGAAGCC
* * * * * *
36051755 TTTGTGGCGAGTTACTTGTAAAGCCCTTGTGACAATTTACTTGGGAAGCC
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAGCC
* * * * *
36051805 TTCGTGGTGAGTCACCTGTAAGGTCTTTGTGGTGATTTACTTGGGAAGCT
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAGCC
* * ** * *
36051855 TTTATGGCGAGTCACCCATAAAGCCTTTTTGGTGATTTACTT-GGAAGGCC
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAA-GCC
* * * *
36051905 TTTGTGGTGAGTCACCTATAAAGCCTTTTTGGTGATTTACTTGGGAAACC
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAGCC
* * * *
36051955 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGACGATTTTCTTGGAAAACC
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAGCC
* * * * *
36052005 TTTGTGGTAACTCACTTGTAAAGCCTTTGTGGCAATTTATTTGGGAAGTCC
1 TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAG-CC
** * *
36052056 -TTGT-GACAGGTTACCTGTAAAGCCTATGTGGCG
1 TTTGTGGTGA-GTCACCTGTAAAGCCTTTGTGGCG
36052089 TAATGCTTGG
Statistics
Matches: 279, Mismatches: 50, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
49 6 0.02
50 266 0.95
51 7 0.03
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (50 bp):
TTTGTGGTGAGTCACCTGTAAAGCCTTTGTGGCGATTTACTTGGGAAGCC
Found at i:36052033 original size:25 final size:25
Alignment explanation
Indices: 36051705--36052036 Score: 157
Period size: 25 Copynumber: 13.3 Consensus size: 25
36051695 GGGTGTTACA
* *
36051705 TTTGTGGTGAGTCACCTGTAAAG-C
1 TTTGTGGTGATTCACTTGTAAAGCC
*** * **
36051729 TCTTGTGACAATTTACTTGGGAAGCC
1 T-TTGTGGTGATTCACTTGTAAAGCC
*
36051755 TTTGTGGCGAGTT-ACTTGTAAAGCC
1 TTTGTGGTGA-TTCACTTGTAAAGCC
* *** * **
36051780 CTTGTGACAATTTACTTGGGAAGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
* * * * *
36051805 TTCGTGGTGAGTCACCTGTAAGGTC
1 TTTGTGGTGATTCACTTGTAAAGCC
* ** *
36051830 TTTGTGGTGATTTACTTGGGAAGCT
1 TTTGTGGTGATTCACTTGTAAAGCC
* * * ***
36051855 TTTATGGCGAGTCACCCATAAAGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
* * * *
36051880 TTTTTGGTGATTTACTTGGAAGGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
* * *
36051905 TTTGTGGTGAGTCACCTATAAAGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
* * *
36051930 TTTTTGGTGATTTACTTGGGAAA-CC
1 TTTGTGGTGATTCACTT-GTAAAGCC
* *
36051955 TTTGTGGTGAGTCACCTGTAAAGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
** ** * *
36051980 TTTGTGACGATTTTCTTGGAAAACC
1 TTTGTGGTGATTCACTTGTAAAGCC
* *
36052005 TTTGTGGTAACTCACTTGTAAAGCC
1 TTTGTGGTGATTCACTTGTAAAGCC
36052030 TTTGTGG
1 TTTGTGG
36052037 CAATTTATTT
Statistics
Matches: 211, Mismatches: 91, Indels: 11
0.67 0.29 0.04
Matches are distributed among these distances:
24 7 0.03
25 197 0.93
26 7 0.03
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (25 bp):
TTTGTGGTGATTCACTTGTAAAGCC
Found at i:36054442 original size:27 final size:26
Alignment explanation
Indices: 36054412--36054539 Score: 73
Period size: 27 Copynumber: 4.8 Consensus size: 26
36054402 AATGTTCCAT
36054412 TTCATATATCTATTTCCATATAACCTA
1 TTCATATATCTATTT-CATATAACCTA
* * * *
36054439 TTCATATAAGC-ATTTCATATATCATTT
1 TTCATAT-ATCTATTTCATATAAC-CTA
* *
36054466 TTCATATAACTGA-TTCGTATAACC-A
1 TTCATATATCT-ATTTCATATAACCTA
* *
36054491 TTTCATATATTTATTTCCATATAACCAA
1 -TTCATATATCTATTT-CATATAACCTA
* * * *
36054519 TACGTATAACCATTTCATATA
1 TTCATATATCTATTTCATATA
36054540 TAATTTTTTA
Statistics
Matches: 76, Mismatches: 17, Indels: 17
0.69 0.15 0.15
Matches are distributed among these distances:
25 1 0.01
26 26 0.34
27 45 0.59
28 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (26 bp):
TTCATATATCTATTTCATATAACCTA
Found at i:36054472 original size:40 final size:38
Alignment explanation
Indices: 36054408--36054596 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 38
36054398 ATCTAATGTT
* *
36054408 CCATTTCATATATCTATTTCCATATAACCTATTCATATAA
1 CCATTTCATATAT-T-TTTTCATATAACCTATTCGTATAA
*
36054448 GCATTTCATATATCATTTTTCATATAA-CTGATTCGTATAA
1 CCATTTCATATAT--TTTTTCATATAACCT-ATTCGTATAA
* *
36054488 CCATTTCATATATTTATTTCCATATAACCAATACGTATAA
1 CCATTTCATATATTT-TTT-CATATAACCTATTCGTATAA
* * *
36054528 CCATTTCATATATAATTTTTTATATAATCGATTCGTATAA
1 CCATTTCATATAT--TTTTTCATATAACCTATTCGTATAA
* *
36054568 ACATTTCGTATATTTATTTCCATATAACC
1 CCATTTCATATATTT-TTT-CATATAACC
36054597 AATCATATAT
Statistics
Matches: 125, Mismatches: 15, Indels: 18
0.79 0.09 0.11
Matches are distributed among these distances:
38 4 0.03
39 8 0.06
40 106 0.85
41 5 0.04
42 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.44
Consensus pattern (38 bp):
CCATTTCATATATTTTTTCATATAACCTATTCGTATAA
Found at i:36054497 original size:80 final size:79
Alignment explanation
Indices: 36054408--36054605 Score: 281
Period size: 80 Copynumber: 2.5 Consensus size: 79
36054398 ATCTAATGTT
* * *
36054408 CCATTTCATATATCTATTTCCATATAACCTATTCATATAAGCATTTCATATATCATTTTTCATAT
1 CCATTTCATATATTTATTTCCATATAACC-ATTCATATAACCATTTCATATATAATTTTTCATAT
36054473 AA-CTGATTCGTATAA
65 AATC-GATTCGTATAA
* * *
36054488 CCATTTCATATATTTATTTCCATATAACCAATACGTATAACCATTTCATATATAATTTTTTATAT
1 CCATTTCATATATTTATTTCCATATAACC-ATTCATATAACCATTTCATATATAATTTTTCATAT
36054553 AATCGATTCGTATAA
65 AATCGATTCGTATAA
* * *
36054568 ACATTTCGTATATTTATTTCCATATAACCAATCATATA
1 CCATTTCATATATTTATTTCCATATAACCATTCATATA
36054606 TAATTTTTTT
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
79 6 0.06
80 98 0.93
81 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (79 bp):
CCATTTCATATATTTATTTCCATATAACCATTCATATAACCATTTCATATATAATTTTTCATATA
ATCGATTCGTATAA
Found at i:36054539 original size:13 final size:13
Alignment explanation
Indices: 36054408--36054539 Score: 81
Period size: 13 Copynumber: 9.9 Consensus size: 13
36054398 ATCTAATGTT
*
36054408 CCATTTCATATAT
1 CCATTTCATATAA
*
36054421 CTATTTCCATATAA
1 CCATTT-CATATAA
36054435 CC-TATTCATATAA
1 CCAT-TTCATATAA
*
36054448 GCATTTCATAT-A
1 CCATTTCATATAA
*
36054460 TCATTTTTCATATAA
1 CCA--TTTCATATAA
* *
36054475 CTGA-TTCGTATAA
1 C-CATTTCATATAA
*
36054488 CCATTTCATATAT
1 CCATTTCATATAA
**
36054501 TTATTTCCATATAA
1 CCATTT-CATATAA
* * *
36054515 CCAATACGTATAA
1 CCATTTCATATAA
36054528 CCATTTCATATA
1 CCATTTCATATA
36054540 TAATTTTTTA
Statistics
Matches: 88, Mismatches: 22, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
12 4 0.05
13 56 0.64
14 26 0.30
15 1 0.01
16 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:36059170 original size:19 final size:20
Alignment explanation
Indices: 36059146--36059184 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
36059136 GATATTCCTT
36059146 TAGTGTA-TTTGATTATCTC
1 TAGTGTATTTTGATTATCTC
36059165 TAGTGTATTTTTGATTATCT
1 TAGTGTA-TTTTGATTATCT
36059185 TGTGGGTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.21, C:0.08, G:0.15, T:0.56
Consensus pattern (20 bp):
TAGTGTATTTTGATTATCTC
Found at i:36059782 original size:19 final size:18
Alignment explanation
Indices: 36059758--36059807 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
36059748 CATCCAAATA
36059758 CCAGAAAATAATAATTTTT
1 CCAGAAAATAATAA-TTTT
*
36059777 CCAGAAAAGTAAGTCATTTT
1 CCAGAAAA-TAA-TAATTTT
36059797 CCAG-AAATAAT
1 CCAGAAAATAAT
36059808 TTTCTAGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 3 0.11
19 11 0.39
20 11 0.39
21 2 0.07
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (18 bp):
CCAGAAAATAATAATTTT
Found at i:36061090 original size:19 final size:19
Alignment explanation
Indices: 36061063--36061101 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36061053 CCCTGTTTTA
36061063 CCCTCTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
*
36061082 CCCTTTGCCTCTTCTGTTC
1 CCCTCTGCCTCTTCTGTTC
36061101 C
1 C
36061102 TTCCTTCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.46, G:0.10, T:0.44
Consensus pattern (19 bp):
CCCTCTGCCTCTTCTGTTC
Found at i:36061116 original size:7 final size:7
Alignment explanation
Indices: 36061104--36061130 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36061094 TCTGTTCCTT
36061104 CCTTCTA
1 CCTTCTA
36061111 CCTTCTA
1 CCTTCTA
36061118 CCTTCTA
1 CCTTCTA
36061125 CCTTCT
1 CCTTCT
36061131 GCCGATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.44, G:0.00, T:0.44
Consensus pattern (7 bp):
CCTTCTA
Found at i:36064264 original size:25 final size:26
Alignment explanation
Indices: 36064232--36064286 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
36064222 TTATTAAATT
*
36064232 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
36064257 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
36064282 A-ATAT
1 ATATAT
36064287 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:36064508 original size:45 final size:44
Alignment explanation
Indices: 36064427--36064517 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
36064417 ACCCCTATTC
*
36064427 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
36064471 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
36064516 CA
1 CA
36064518 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:36064517 original size:16 final size:16
Alignment explanation
Indices: 36064498--36064549 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
36064488 GATTTGCTAT
* *
36064498 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
36064514 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36064530 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36064546 TACA
1 TACA
36064550 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:36065876 original size:16 final size:16
Alignment explanation
Indices: 36065854--36065903 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
36065844 TAAGTATAAA
*
36065854 ATGTTTTTCTTTCTTT
1 ATGTTTTTCTTACTTT
* *
36065870 TTGTTTTACTTACTTT
1 ATGTTTTTCTTACTTT
**
36065886 ATGTTTTTAATACTTT
1 ATGTTTTTCTTACTTT
36065902 AT
1 AT
36065904 TATTATTTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (16 bp):
ATGTTTTTCTTACTTT
Found at i:36071060 original size:22 final size:22
Alignment explanation
Indices: 36071035--36071076 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
36071025 TAAGATATAC
36071035 ATTGAATTTTATTGCCTCGATA
1 ATTGAATTTTATTGCCTCGATA
36071057 ATTGAATTTTATTGCCTCGA
1 ATTGAATTTTATTGCCTCGA
36071077 CAATCACCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (22 bp):
ATTGAATTTTATTGCCTCGATA
Found at i:36071412 original size:14 final size:14
Alignment explanation
Indices: 36071393--36071427 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
36071383 TGGGAATGGC
36071393 ATTTTTTTATGTTT
1 ATTTTTTTATGTTT
*
36071407 ATTTTTTTTTGTTT
1 ATTTTTTTATGTTT
36071421 -TTTTTTT
1 ATTTTTTT
36071428 CACTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.86
Consensus pattern (14 bp):
ATTTTTTTATGTTT
Found at i:36078985 original size:36 final size:36
Alignment explanation
Indices: 36078892--36078968 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
36078882 ATTGTTGCTA
* *
36078892 AAGAAGAAGAAGTCGT-TGAAAATGAGAAAGAAAAAG
1 AAGAAGAAGAAGT-TTCTAAAAATGAGAAAGAAAAAG
36078928 AAGAAGAAGAAGTTTCTAAAAATGAGAAAGAAAAAG
1 AAGAAGAAGAAGTTTCTAAAAATGAGAAAGAAAAAG
36078964 AAGAA
1 AAGAA
36078969 TAAAATTATG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 37 0.97
ACGTcount: A:0.61, C:0.03, G:0.25, T:0.12
Consensus pattern (36 bp):
AAGAAGAAGAAGTTTCTAAAAATGAGAAAGAAAAAG
Found at i:36080560 original size:66 final size:66
Alignment explanation
Indices: 36080438--36080561 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 66
36080428 TTATTGCATT
* * * *
36080438 AATGTCGTTGCATGACTTAATCCCAGATTGAGTCCAGAATTGTCGCTGCACCTAACAGCTGCCCG
1 AATGTCGCTGCATAACTTAATCCCAGATTGAGTCCAAAATTGTCGCCGCACCTAACAGCTGCCCG
36080503 C
66 C
* * * * *
36080504 AATGTCGCTGCATAAGTTAATTCCAGATTGCA-TCCAAAATTGTTGCCGTACTTAACAG
1 AATGTCGCTGCATAACTTAATCCCAGATTG-AGTCCAAAATTGTCGCCGCACCTAACAG
36080562 TTGTCTGGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
66 47 0.98
67 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (66 bp):
AATGTCGCTGCATAACTTAATCCCAGATTGAGTCCAAAATTGTCGCCGCACCTAACAGCTGCCCG
C
Found at i:36104522 original size:5 final size:5
Alignment explanation
Indices: 36104512--36104538 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
36104502 TAAGTTCCCT
36104512 TTTTG TTTTG TTTTG TTTTG TTTTG TT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TT
36104539 CATGCCTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:36111383 original size:68 final size:68
Alignment explanation
Indices: 36111274--36111410 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
36111264 GAACAAATTT
36111274 TAACGTTAGTGCCTAAATTAAAAAAATTCAAAGTAGGTGACCAAAACATGAACGC-AGGCATAGT
1 TAACGTTAGTGCCTAAATTAAAAAAATTCAAAGTAGGTGACCAAAACATGAACGCGA-GCATAGT
36111338 TGAG
65 TGAG
*
36111342 TAACGTTAGTGCCTAAATTAAAAAAATTTAAAGTAGGTGACCAAAACATGAACGCGAGCATAGTT
1 TAACGTTAGTGCCTAAATTAAAAAAATTCAAAGTAGGTGACCAAAACATGAACGCGAGCATAGTT
36111407 GAG
66 GAG
36111410 T
1 T
36111411 GACCATTTGT
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
68 66 0.99
69 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.23
Consensus pattern (68 bp):
TAACGTTAGTGCCTAAATTAAAAAAATTCAAAGTAGGTGACCAAAACATGAACGCGAGCATAGTT
GAG
Found at i:36113214 original size:16 final size:17
Alignment explanation
Indices: 36113182--36113214 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36113172 TCTCTTAGGG
*
36113182 TTAGGGTTTTTATTTTA
1 TTAGGGTTTTTAGTTTA
36113199 TTAGGGTTTTT-GTTTA
1 TTAGGGTTTTTAGTTTA
36113215 GGGTTTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (17 bp):
TTAGGGTTTTTAGTTTA
Found at i:36115707 original size:39 final size:39
Alignment explanation
Indices: 36115664--36115742 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
36115654 ATCAATGGCT
* *
36115664 ACAATTAAAAGCTGCATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGATGCATACAATTAGAACTATAAGATTAC
* *
36115703 ACAATTAGAAGATGTATACAATTAGAACTATAAGATTAC
1 ACAATTAAAAGATGCATACAATTAGAACTATAAGATTAC
36115742 A
1 A
36115743 TAATCATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.48, C:0.14, G:0.11, T:0.27
Consensus pattern (39 bp):
ACAATTAAAAGATGCATACAATTAGAACTATAAGATTAC
Found at i:36119026 original size:39 final size:39
Alignment explanation
Indices: 36118983--36119061 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
36118973 ATCAATGGCT
* * *
36118983 ACAATTAAAAGCTGTATATAATTAGTACTCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAAATCTAAGATTAC
*
36119022 ACAATTAGAAGCTGTATACAATTAGAAATCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAAATCTAAGATTAC
36119061 A
1 A
36119062 TAATCATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (39 bp):
ACAATTAAAAGCTGTATACAATTAGAAATCTAAGATTAC
Found at i:36126707 original size:18 final size:20
Alignment explanation
Indices: 36126670--36126708 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36126660 CTATTTACAC
36126670 AAAAAAATTATAATTATAAT
1 AAAAAAATTATAATTATAAT
36126690 AAAAAAATTA-AATT-TAAT
1 AAAAAAATTATAATTATAAT
36126708 A
1 A
36126709 TTATTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 4 0.21
20 10 0.53
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAAAATTATAATTATAAT
Found at i:36126904 original size:9 final size:9
Alignment explanation
Indices: 36126892--36126962 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
36126882 TATTAAAAAA
36126892 GAGAGAGTT
1 GAGAGAGTT
36126901 GAGAG-GCTT
1 GAGAGAG-TT
*
36126910 GAGAGACTT
1 GAGAGAGTT
*
36126919 GAGAGGGTTT
1 GAGAGAG-TT
*
36126929 GAGAGAATTT
1 GAGAG-AGTT
* *
36126939 AAGAGAATT
1 GAGAGAGTT
36126948 GAGAGAGTT
1 GAGAGAGTT
36126957 GAGAGA
1 GAGAGA
36126963 AGGATGTGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
8 1 0.02
9 35 0.71
10 13 0.27
ACGTcount: A:0.35, C:0.03, G:0.39, T:0.23
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:36127532 original size:19 final size:19
Alignment explanation
Indices: 36127489--36127549 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
36127479 TTTGAAATTT
**
36127489 AAAATATAAAAAATTAAAAA
1 AAAATAT-AAAAATTAACTA
36127509 TAAAATATAAAAATTAACTA
1 -AAAATATAAAAATTAACTA
*
36127529 AAAATATAGAAACTT-ACTA
1 AAAATATA-AAAATTAACTA
36127548 AA
1 AA
36127550 TATTTTAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 14 0.39
20 15 0.42
21 7 0.19
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAATATAAAAATTAACTA
Found at i:36128280 original size:2 final size:2
Alignment explanation
Indices: 36128273--36128299 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36128263 GTACAAGCAA
36128273 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
36128300 AATTTCAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36133561 original size:13 final size:14
Alignment explanation
Indices: 36133536--36133564 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36133526 TCGAATCCAA
36133536 AAATTCAACACAAC
1 AAATTCAACACAAC
36133550 AAATTC-ACACAAC
1 AAATTCAACACAAC
36133563 AA
1 AA
36133565 TACATCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.28, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATTCAACACAAC
Found at i:36138197 original size:28 final size:27
Alignment explanation
Indices: 36138122--36138197 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
36138112 CCTTTACGGT
*
36138122 AGTCTATGAAATAGAAGCCTTTGTGGC
1 AGTCTATGAAATAGAAGTCTTTGTGGC
*
36138149 AGTCTATAAAATAGAAGTCTTTGTGG-
1 AGTCTATGAAATAGAAGTCTTTGTGGC
36138175 AGATCTATGGAAAT-GAATGTCTT
1 AG-TCTAT-GAAATAGAA-GTCTT
36138198 CATGGCACAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.05
27 32 0.74
28 9 0.21
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (27 bp):
AGTCTATGAAATAGAAGTCTTTGTGGC
Found at i:36138328 original size:26 final size:26
Alignment explanation
Indices: 36138299--36138349 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36138289 CAAACCCTGG
*
36138299 AAGAATGATATGTATGGCT-AACTTTA
1 AAGAATGATAGGTATGG-TAAACTTTA
*
36138325 AAGAATGGTAGGTATGGTAAACTTT
1 AAGAATGATAGGTATGGTAAACTTT
36138350 GAGAGAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (26 bp):
AAGAATGATAGGTATGGTAAACTTTA
Found at i:36149982 original size:87 final size:87
Alignment explanation
Indices: 36149873--36150061 Score: 288
Period size: 87 Copynumber: 2.2 Consensus size: 87
36149863 TCATTTATCT
* * * *
36149873 GAGATAGCAACAAAGGCATCCTTTTAACAGAGATAGCCACAAATGCATCCTTTTAACAAAGATTG
1 GAGATAGCAACAAAGACATCCTTTTAACAAAGATAGCCACAAAGGCATCCTTTTAACAAAGATCG
*
36149938 CCACAAAGGTTTCCTTTTAATA
66 CCACAAAGGCTTCCTTTTAATA
* * * *
36149960 GAGACAGCAACAAAGACATCCTTTTAACAAAGATAGTCACAAAGGCATCCTTTTAATAGAGATCG
1 GAGATAGCAACAAAGACATCCTTTTAACAAAGATAGCCACAAAGGCATCCTTTTAACAAAGATCG
36150025 CCACAAAGGCTTCCTTTTAATA
66 CCACAAAGGCTTCCTTTTAATA
*
36150047 GAGATAGCCACAAAG
1 GAGATAGCAACAAAG
36150062 GCTCACTTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 91 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (87 bp):
GAGATAGCAACAAAGACATCCTTTTAACAAAGATAGCCACAAAGGCATCCTTTTAACAAAGATCG
CCACAAAGGCTTCCTTTTAATA
Found at i:36150064 original size:29 final size:29
Alignment explanation
Indices: 36149822--36150063 Score: 243
Period size: 29 Copynumber: 8.4 Consensus size: 29
36149812 TTAGAGTCTC
* * * *
36149822 GCCATAAAGGCGTCCTTTTAACAGAGTTT
1 GCCACAAAGGCATCCTTTTAACAGAGATA
* * * * * *
36149851 GCCA-TAAGACATTCATTTATCTGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATA
*
36149879 GCAACAAAGGCATCCTTTTAACAGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATA
* * *
36149908 GCCACAAATGCATCCTTTTAACAAAGATT
1 GCCACAAAGGCATCCTTTTAACAGAGATA
** * *
36149937 GCCACAAAGGTTTCCTTTTAATAGAGACA
1 GCCACAAAGGCATCCTTTTAACAGAGATA
* * *
36149966 GCAACAAAGACATCCTTTTAACAAAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATA
* * *
36149995 GTCACAAAGGCATCCTTTTAATAGAGATC
1 GCCACAAAGGCATCCTTTTAACAGAGATA
* *
36150024 GCCACAAAGGCTTCCTTTTAATAGAGATA
1 GCCACAAAGGCATCCTTTTAACAGAGATA
36150053 GCCACAAAGGC
1 GCCACAAAGGC
36150064 TCACTTATGC
Statistics
Matches: 169, Mismatches: 43, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
28 18 0.11
29 151 0.89
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
GCCACAAAGGCATCCTTTTAACAGAGATA
Found at i:36161429 original size:40 final size:40
Alignment explanation
Indices: 36161329--36161500 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
36161319 GCTCCTCGTT
* * *
36161329 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36161369 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36161408 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36161448 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
36161488 CAAATGCCTTCGG
1 CAAATGCCTTCGG
36161501 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36169313 original size:40 final size:40
Alignment explanation
Indices: 36169217--36169477 Score: 294
Period size: 40 Copynumber: 6.5 Consensus size: 40
36169207 CTCGTTCAAG
* * * * *
36169217 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
36169256 TGCCTTCGGGACATAACCCGGATTGAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
*
36169296 TGCCTTCGGGTCTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
36169336 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
36169376 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* ** * * * *
36169416 GGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGAA
* *
36169456 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
36169478 CAGCATTCAA
Statistics
Matches: 194, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.18
40 152 0.78
41 8 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:36169486 original size:41 final size:41
Alignment explanation
Indices: 36169409--36169486 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36169399 TTAGTATCTC
* * *
36169409 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36169450 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36169487 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36184603 original size:28 final size:28
Alignment explanation
Indices: 36184562--36184718 Score: 88
Period size: 28 Copynumber: 5.5 Consensus size: 28
36184552 GAAACACACT
* * * *
36184562 TCGCATACACAGTGCCCACTGACTGATT
1 TCGCACACATAGTGCCCACTGACAGATC
* * * **
36184590 TCGCACACATAGTGCTCGA-TTAAAGAAG
1 TCGCACACATAGTGC-CCACTGACAGATC
* *
36184618 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCC-CACTGA-CAGATC
* * *
36184647 TCGCACACATAGTGCTCGATTGA-AGAAC
1 TCGCACACATAGTGC-CCACTGACAGATC
*
36184675 TCGCACACATAGTGCCTCAACT-ACTGATC
1 TCGCACACATAGTGCC-C-ACTGACAGATC
*
36184704 TGGCACACATAGTGC
1 TCGCACACATAGTGC
36184719 TCGGTTGAAG
Statistics
Matches: 99, Mismatches: 21, Indels: 17
0.72 0.15 0.12
Matches are distributed among these distances:
27 3 0.03
28 51 0.52
29 43 0.43
30 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCCCACTGACAGATC
Found at i:36184651 original size:29 final size:29
Alignment explanation
Indices: 36184618--36184718 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
36184608 ATTAAAGAAG
36184618 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACCAATC
* **
36184647 TCGCACACATAGTG-CTCGATTGAAGAA-C
1 TCGCACACATAGTGCCTCAATT-ACCAATC
* **
36184675 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTCAATTACCAATC
*
36184704 TGGCACACATAGTGC
1 TCGCACACATAGTGC
36184719 TCGGTTGAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACCAATC
Found at i:36184657 original size:57 final size:57
Alignment explanation
Indices: 36184590--36184750 Score: 225
Period size: 57 Copynumber: 2.8 Consensus size: 57
36184580 CTGACTGATT
* *
36184590 TCGCACACATAGTGCTCGATTAAAGAAGTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAAGTCGCACACATAGTGCCTCAACTACCAATC
* **
36184647 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAAGTCGCACACATAGTGCCTCAACTACCAATC
* * * *
36184704 TGGCACACATAGTGCTCGGTTGAAG-AGCTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAAG-TCGCACACATAGTGCCTCA
36184751 TAATTCCAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
56 1 0.01
57 92 0.99
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAAGTCGCACACATAGTGCCTCAACTACCAATC
Found at i:36184823 original size:40 final size:40
Alignment explanation
Indices: 36184756--36184911 Score: 235
Period size: 40 Copynumber: 3.9 Consensus size: 40
36184746 CCTCATAATT
* * *
36184756 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCAGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
*
36184795 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* *
36184835 CCAGCACAAATGCTCTTCGGGACTTAGCCTGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
36184875 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
36184912 TAACTCTCAA
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 14 0.13
40 92 0.87
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:36192355 original size:80 final size:81
Alignment explanation
Indices: 36192233--36192490 Score: 364
Period size: 80 Copynumber: 3.2 Consensus size: 81
36192223 TTAATTTACT
* * *
36192233 AAATTACTAAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCTGA-TTTATAAAATTACCGA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTCAGTTTATAAAATTACCGA
*
36192296 AATACTGTCGATTGTA
66 AATACCGTCGATTGTA
*
36192312 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCC-CAGTTTATAAAATTACCGA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTCAGTTTATAAAATTACCGA
*
36192376 AATACCGTCAATTGTA
66 AATACCGTCGATTGTA
* * *
36192392 AAATTACTAAAATACCCTCGACTTGTAAAATTATCGAAA-TA-CCCTCAGTTTGTAAAATTACTG
1 AAATTACTAAAATACCCTCGACTTGTAAAATTA-CCAAAGTACCCCTCAGTTTATAAAATTACCG
*
36192455 AAATACCCTCGATTTGTA
65 AAATACCGTCGA-TTGTA
*
36192473 AAATTACTGAAATACCCT
1 AAATTACTAAAATACCCT
36192491 TGTAGGGTAG
Statistics
Matches: 161, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
79 20 0.12
80 115 0.71
81 26 0.16
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTCAGTTTATAAAATTACCGA
AATACCGTCGATTGTA
Found at i:36192490 original size:27 final size:27
Alignment explanation
Indices: 36192233--36192490 Score: 246
Period size: 27 Copynumber: 9.7 Consensus size: 27
36192223 TTAATTTACT
* * *
36192233 AAATTACTAAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
36192259 AAATTAC-CAAAGTACCC-CTGATTTATA
1 AAATTACTGAAA-TACCCTC-GATTTGTA
* **
36192286 AAATTACCGAAATACTGTCGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
36192312 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
36192339 AAATTAC-CAAAGTACCC-CCAGTTTATA
1 AAATTACTGAAA-TACCCTCGA-TTTGTA
* * *
36192366 AAATTACCGAAATACCGTC-AATTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
36192392 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
36192419 AAATTA-TCGAAATACCCTC-AGTTTGTA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
36192446 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
36192473 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
36192491 TGTAGGGTAG
Statistics
Matches: 193, Mismatches: 25, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
25 3 0.02
26 62 0.32
27 118 0.61
28 10 0.05
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:36192504 original size:27 final size:27
Alignment explanation
Indices: 36192474--36192840 Score: 430
Period size: 27 Copynumber: 13.6 Consensus size: 27
36192464 CGATTTGTAA
*
36192474 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
36192501 AATTACTAAAATACCACTATAGGTTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
36192528 AATTACCGAAATGCCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36192555 AATTACCT-AAATACCCTTTTAGGGTAG
1 AATTA-CTGAAATACCCCTGTAGGGTAG
* *
36192582 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
36192609 AATTACTAAAATACCCCCGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36192636 AATTACTGAAATACCCATGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36192663 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
36192690 AATTACTGAAATACGCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
36192717 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
36192744 AATTACTGAAATACCCTTGTAAGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
36192771 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36192798 AATTACTGAAATACCCCTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
36192825 AATTACCGAGATACCC
1 AATTACTGAAATACCC
36192841 TTATGGGATA
Statistics
Matches: 282, Mismatches: 56, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 280 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:36192505 original size:54 final size:54
Alignment explanation
Indices: 36192393--36192830 Score: 353
Period size: 54 Copynumber: 8.1 Consensus size: 54
36192383 TCAATTGTAA
* * ** *
36192393 AATTACTAAAATACCCTCG-ACTTGTAAAATTA-TCGAAATACCCTCAGT-TTGTAA
1 AATTACTAAAATACCCTCGTA-TGGTAAAATTACT-GAAATACCCT-TGTAGGGTAG
* *
36192447 AATTACTGAAATACCCTCG-ATTTGTAAAATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTCGTA-TGGTAAAATTACTGAAATACCCTTGTAGGGTAG
* * * * *
36192501 AATTACTAAAATA-CCAC-TATAGGTTAGAATTACCGAAATGCCCTTGTAGGGTAA
1 AATTACTAAAATACCCTCGTAT-GG-TAAAATTACTGAAATACCCTTGTAGGGTAG
** * * *
36192555 AATTACCT-AAATACCCTTTTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAG
1 AATTA-CTAAAATACCCTCGTATGGTA-AAATTACTGAAATACCCTTGTAGGGTAG
* * * *
36192609 AATTACTAAAATACCCCCGTAGGGTAAAATTACTGAAATACCCATGTAGAGTAG
1 AATTACTAAAATACCCTCGTATGGTAAAATTACTGAAATACCCTTGTAGGGTAG
* ** * *
36192663 AAATACCGAAATACCC-CTGTAGGGTAGAATTACTGAAATACGCC-TGTAGGGTAG
1 AATTACTAAAATACCCTC-GTATGGTAAAATTACTGAAATAC-CCTTGTAGGGTAG
* * * *
36192717 AATTACTGAAATACCC-C-TATAGGGTAGAATTACTGAAATACCCTTGTAAGATAG
1 AATTACTAAAATACCCTCGTAT--GGTAAAATTACTGAAATACCCTTGTAGGGTAG
* * * * *
36192771 AATTACCAAAATACCC-CTGTATGGTAGAATTACTGAAATACCCCTATAGGGTAA
1 AATTACTAAAATACCCTC-GTATGGTAAAATTACTGAAATACCCTTGTAGGGTAG
36192825 AATTAC
1 AATTAC
36192831 CGAGATACCC
Statistics
Matches: 323, Mismatches: 43, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.01
53 15 0.05
54 289 0.89
55 11 0.03
56 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (54 bp):
AATTACTAAAATACCCTCGTATGGTAAAATTACTGAAATACCCTTGTAGGGTAG
Found at i:36192513 original size:81 final size:81
Alignment explanation
Indices: 36192284--36192858 Score: 370
Period size: 81 Copynumber: 7.1 Consensus size: 81
36192274 CCCTGATTTA
** ** * ** *
36192284 TAAAATTACCGAAATACTGTCG-ATTGTAAAATTACTGAAATACCCTCG-ACTTGTAAAATTACC
1 TAAAATTACCGAAATACCCTCGTAGGGTAAAATTACTGAAATACCCTTGTA-GGGTAGAATTACC
* ***
36192347 -AAAGTACCCCCAGTTTA
65 GAAA-TACCCTCAGTGGG
* * ** * * ** * *
36192364 TAAAATTACCGAAATACCGTC-AATTGTAAAATTACTAAAATACCCTCG-ACTTGTAAAATTATC
1 TAAAATTACCGAAATACCCTCGTAGGGTAAAATTACTGAAATACCCTTGTA-GGGTAGAATTACC
**
36192427 GAAATACCCTCAGTTTG
65 GAAATACCCTCAGTGGG
* ** *
36192444 TAAAATTACTGAAATACCCTCG-ATTTGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACT
1 TAAAATTACCGAAATACCCTCGTA-GGGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACC
* *
36192508 AAAATACCACT-A-TAGGT
65 GAAATACC-CTCAGT-GGG
* * * * *
36192525 TAGAATTACCGAAATGCCCTTGTAGGGTAAAATTACCT-AAATACCCTTTTAGGGTAGAAATACC
1 TAAAATTACCGAAATACCCTCGTAGGGTAAAATTA-CTGAAATACCCTTGTAGGGTAGAATTACC
*
36192589 GAAATACCC-CTGTAGGG
65 GAAATACCCTCAGT-GGG
* ** * * * *
36192606 TAGAATTACTAAAATACCCCCGTAGGGTAAAATTACTGAAATACCCATGTAGAGTAGAAATACCG
1 TAAAATTACCGAAATACCCTCGTAGGGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACCG
*
36192671 AAATACCC-CTGTAGGG
66 AAATACCCTCAGT-GGG
* * * * * *
36192687 TAGAATTACTGAAATACGCCT-GTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACT
1 TAAAATTACCGAAATAC-CCTCGTAGGGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACC
* * *
36192751 GAAATACCCT-TGTAAGA
65 GAAATACCCTCAGT-GGG
* * * * * * *
36192768 TAGAATTACCAAAATACCC-CTGTATGGTAGAATTACTGAAATACCCCTATAGGGTAAAATTACC
1 TAAAATTACCGAAATACCCTC-GTAGGGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACC
* *
36192832 GAGATACCCTTA-TGGG
65 GAAATACCCTCAGTGGG
36192848 ATAAAATTACC
1 -TAAAATTACC
36192859 ATTTTACCCC
Statistics
Matches: 419, Mismatches: 58, Indels: 35
0.82 0.11 0.07
Matches are distributed among these distances:
80 97 0.23
81 314 0.75
82 8 0.02
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (81 bp):
TAAAATTACCGAAATACCCTCGTAGGGTAAAATTACTGAAATACCCTTGTAGGGTAGAATTACCG
AAATACCCTCAGTGGG
Found at i:36192852 original size:27 final size:27
Alignment explanation
Indices: 36192443--36192858 Score: 318
Period size: 27 Copynumber: 15.4 Consensus size: 27
36192433 CCCTCAGTTT
* * **
36192443 GTAAAATTACTGAAATACCCTCGAT-TT
1 GTAAAATTACCGAAATACCC-CTATAGG
* * *
36192470 GTAAAATTACTGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* ** *
36192497 GTAGAATTACTAAAATACCACTATAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* * * * *
36192524 TTAGAATTACCGAAATGCCCTTGTAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* * *
36192551 GTAAAATTACCTAAATACCCTTTTAGG
1 GTAAAATTACCGAAATACCCCTATAGG
*
36192578 GTAGAAA-TACCGAAATACCCCTGTAGG
1 GTA-AAATTACCGAAATACCCCTATAGG
* ** **
36192605 GTAGAATTACTAAAATACCCCCGTAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* * * *
36192632 GTAAAATTACTGAAATACCCATGTAGA
1 GTAAAATTACCGAAATACCCCTATAGG
*
36192659 GTAGAAA-TACCGAAATACCCCTGTAGG
1 GTA-AAATTACCGAAATACCCCTATAGG
* * * *
36192686 GTAGAATTACTGAAATACGCCTGTAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* *
36192713 GTAGAATTACTGAAATACCCCTATAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* * * * *
36192740 GTAGAATTACTGAAATACCCTTGTAAG
1 GTAAAATTACCGAAATACCCCTATAGG
* * * * *
36192767 ATAGAATTACCAAAATACCCCTGTATG
1 GTAAAATTACCGAAATACCCCTATAGG
* *
36192794 GTAGAATTACTGAAATACCCCTATAGG
1 GTAAAATTACCGAAATACCCCTATAGG
* *
36192821 GTAAAATTACCGAGATACCCTTAT-GG
1 GTAAAATTACCGAAATACCCCTATAGG
36192847 GATAAAATTACC
1 G-TAAAATTACC
36192859 ATTTTACCCC
Statistics
Matches: 324, Mismatches: 59, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.02
27 310 0.96
28 6 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCTATAGG
Found at i:36193120 original size:27 final size:26
Alignment explanation
Indices: 36193082--36193164 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
36193072 TGGAGGAAGC
36193082 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
36193109 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
36193135 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
36193162 GTT
1 GTT
36193165 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:36193407 original size:27 final size:27
Alignment explanation
Indices: 36193377--36193449 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
36193367 ATTCTGTTAA
* *
36193377 GTGGCTTTGCCACATTATCTGAT-TCTG
1 GTGGCTCTGCCACAATATCT-ATATCTG
36193404 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* **
36193431 GTGACTCTATCACAATATC
1 GTGGCTCTGCCACAATATC
36193450 AGTTCTGGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:36193663 original size:18 final size:19
Alignment explanation
Indices: 36193630--36193665 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36193620 TTCTGAATTT
36193630 GATTCTGCAGTTTGATTCG
1 GATTCTGCAGTTTGATTCG
*
36193649 GATTCT-CATTTTGATTC
1 GATTCTGCAGTTTGATTC
36193666 TAGTTCTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.47
Consensus pattern (19 bp):
GATTCTGCAGTTTGATTCG
Found at i:36195718 original size:27 final size:27
Alignment explanation
Indices: 36195541--36195717 Score: 221
Period size: 27 Copynumber: 6.6 Consensus size: 27
36195531 TCTCATATCG
*
36195541 GTAGGGTAGAATTACTGAAATACGCCT
1 GTAGGGTAGAATTACTGAAATACCCCT
36195568 GTAGGGTAGAATTACTGAAATACCCCT
1 GTAGGGTAGAATTACTGAAATACCCCT
* *
36195595 GTAGGGTAGAATTACTAAAATACCCTT
1 GTAGGGTAGAATTACTGAAATACCCCT
* *
36195622 GTAAGGTAGAATTA-TCGAAATACCCCA
1 GTAGGGTAGAATTACT-GAAATACCCCT
* ***
36195649 ATATCATAGAATTACTGAAATACCCCT
1 GTAGGGTAGAATTACTGAAATACCCCT
* * *
36195676 GTAGGGTAGAATTACCGAGATACCCTT
1 GTAGGGTAGAATTACTGAAATACCCCT
*
36195703 GTAGGGTAAAATTAC
1 GTAGGGTAGAATTAC
36195718 CATTTTACCC
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGGGTAGAATTACTGAAATACCCCT
Found at i:36195985 original size:27 final size:26
Alignment explanation
Indices: 36195946--36196024 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
36195936 GGAAACGTTT
36195946 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTATGCCAC-AATATCTGTTC
*
36195973 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTATGCCACAATATCTGT-TC
* * *
36196000 TGGTGACTTTGTCACAATATCTGTT
1 TGGTGGCTATGCCACAATATCTGTT
36196025 GACCGATCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TGGTGGCTATGCCACAATATCTGTTC
Found at i:36196209 original size:97 final size:98
Alignment explanation
Indices: 36196034--36196234 Score: 305
Period size: 97 Copynumber: 2.1 Consensus size: 98
36196024 TGACCGATCG
* * *
36196034 ATGGCTGAGTTCCGATCATGTTACCGAAGGTTGTGTGCCGTTATTGTGGGCTTCGTATCAATATT
1 ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCAATATT
*
36196099 GTAGGCTTTGTGCCGATGATAGACCCGTTATCA
66 GTAGGCTTCGTGCCGATGATAGACCCGTTATCA
* * *
36196132 ATGG-TGAGTGCCGGTCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTTGTATCGATATT
1 ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCAATATT
* * *
36196196 GTGGGCTTCGTGCCGATTATAGACCCGTTATCG
66 GTAGGCTTCGTGCCGATGATAGACCCGTTATCA
36196229 ATGGCT
1 ATGGCT
36196235 TTGTGCCACT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
97 87 0.95
98 5 0.05
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.34
Consensus pattern (98 bp):
ATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTGTGGGCTTCGTATCAATATT
GTAGGCTTCGTGCCGATGATAGACCCGTTATCA
Found at i:36196212 original size:20 final size:20
Alignment explanation
Indices: 36196172--36196212 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36196162 TGTGTGCCAT
* *
36196172 TATTGTGGGCTTTGTATCGA
1 TATTGTGGGCTTCGTACCGA
*
36196192 TATTGTGGGCTTCGTGCCGA
1 TATTGTGGGCTTCGTACCGA
36196212 T
1 T
36196213 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.32, T:0.41
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:36196286 original size:27 final size:27
Alignment explanation
Indices: 36196256--36196328 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
36196246 ATTCTGTTAA
* *
36196256 GTGGCTTTGCCACATTATCTGAT-TCTG
1 GTGGCTCTGCCACAATATCT-ATATCTG
36196283 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTATATCTG
* *
36196310 GTGACTCTGTCACAATATC
1 GTGGCTCTGCCACAATATC
36196329 AGTTCTGGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATATCTG
Found at i:36197417 original size:3 final size:3
Alignment explanation
Indices: 36197409--36197437 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
36197399 AAATCATATC
36197409 ATT ATT ATT ATT ATT ATT ATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
36197438 TTCAACTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:36198846 original size:43 final size:43
Alignment explanation
Indices: 36198785--36198939 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
36198775 CCGGCATTAC
*
36198785 GCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
36198828 GCCTGCTAGGCACGAAGGCCCGAATACACATCA-TCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
*
36198871 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
*
36198914 GCCTGCTAGGTACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
36198940 TAATACCAGC
Statistics
Matches: 107, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
42 1 0.01
43 106 0.99
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:36198985 original size:38 final size:38
Alignment explanation
Indices: 36198932--36199115 Score: 264
Period size: 38 Copynumber: 4.8 Consensus size: 38
36198922 GGTACGAAGG
* * * * *
36198932 CCCGAATATAATACCAGCACTAGGCCTGCGAGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
36198970 CCCGGATATATTACCAGCACGAAGCTTGAGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
36199008 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
36199046 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
36199084 CCCGGATATAATT-CCAGCA-TATAGCCTGCGGG
1 CCCGGATAT-ATTACCAGCACGA-AGCCTGCGGG
36199116 TCTTTAGGCC
Statistics
Matches: 134, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
37 1 0.01
38 130 0.97
39 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:36201858 original size:28 final size:28
Alignment explanation
Indices: 36201827--36201896 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
36201817 ATATTTTCCT
*
36201827 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
36201855 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
**
36201883 TCGCATGCTTAGTG
1 TCGCACACTTAGTG
36201897 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:36207486 original size:15 final size:16
Alignment explanation
Indices: 36207466--36207495 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36207456 GAAAATTGCC
36207466 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
36207481 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
36207496 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:36213553 original size:49 final size:49
Alignment explanation
Indices: 36213493--36214092 Score: 957
Period size: 47 Copynumber: 12.6 Consensus size: 49
36213483 GATAATTGTG
36213493 ATGTG-AA-TGTATATATATGTGATAAGG-CTGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
36213540 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213589 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36213636 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213685 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36213732 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36213781 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213830 ATGTGAAAGTGTATATATA--TGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36213877 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213926 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213973 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
36214020 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
36214067 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
36214093 TCCCGAAGGG
Statistics
Matches: 524, Mismatches: 16, Indels: 25
0.93 0.03 0.04
Matches are distributed among these distances:
46 2 0.00
47 278 0.53
48 5 0.01
49 237 0.45
50 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36213604 original size:96 final size:96
Alignment explanation
Indices: 36213493--36214092 Score: 964
Period size: 96 Copynumber: 6.3 Consensus size: 96
36213483 GATAATTGTG
* *
36213493 ATGTGAATGTATATATATGTGATAAGG-CTGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATA
36213557 TATGTGATAAGGCCTAATGGCCGATGTGATGA
65 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213589 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36213654 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213685 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36213750 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
36213781 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36213846 ATA--TGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
36213877 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36213940 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36213973 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
36214036 ATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
36214067 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36214093 TCCCGAAGGG
Statistics
Matches: 483, Mismatches: 15, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
93 2 0.00
94 102 0.21
96 323 0.67
97 2 0.00
98 54 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36216315 original size:55 final size:55
Alignment explanation
Indices: 36216254--36216430 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
36216244 ATATTAAGTC
* * *
36216254 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
36216309 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
36216364 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36216420 CGCACACTTAG
1 CGCACACTTAG
36216431 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36216318 original size:28 final size:27
Alignment explanation
Indices: 36216254--36216405 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
36216244 ATATTAAGTC
* *
36216254 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36216281 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
36216309 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36216336 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36216364 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36216391 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36216406 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36218729 original size:56 final size:57
Alignment explanation
Indices: 36218629--36218735 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 57
36218619 ATAGAAATGG
* **
36218629 TGAAAATGGAGAAATGGAAAGTATTTGGAAATGATTATGGTTTTCTCCAAATGATAA
1 TGAAAATGGAGAAATGGAAAGTATTTGGAAATGAATATCATTTTCTCCAAATGATAA
* *
36218686 TGAAAATGGAGAAAT-GAAATTATTTGGAAATGAATGTCATTTTCTCCAAA
1 TGAAAATGGAGAAATGGAAAGTATTTGGAAATGAATATCATTTTCTCCAAA
36218736 AAGAAAATGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
56 30 0.67
57 15 0.33
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.32
Consensus pattern (57 bp):
TGAAAATGGAGAAATGGAAAGTATTTGGAAATGAATATCATTTTCTCCAAATGATAA
Found at i:36219549 original size:93 final size:91
Alignment explanation
Indices: 36219393--36219574 Score: 222
Period size: 93 Copynumber: 2.0 Consensus size: 91
36219383 CAATTTGAAT
* * *
36219393 TTCAAAGTTTAGAAAAATCGAGCAAAAATCAAAAGTATCGATACCTTGCAAAAATTATCGATACC
1 TTCAAAGTTTAGAAAAATCGAACAAAAATCAAAAGTATCAATACCTT-CAAAAAGTATCGATA-C
* *
36219458 CTTTCCTGGTATCGATATCATTTTAAGC
64 CTTGCCTGGTATCGATACCATTTTAAGC
* * * * * *
36219486 TTCAATGTTTTGAAAAATTGAACAAAAATCAAATGTATTAATACCCTT-AACAAAGTATTGATAC
1 TTCAAAGTTTAGAAAAATCGAACAAAAATCAAAAGTATCAATA-CCTTCAA-AAAGTATCGATAC
36219550 CTTGCCTGGTATCGATACCATTTTA
64 CTTGCCTGGTATCGATACCATTTTA
36219575 CAGTTAATAA
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
92 26 0.34
93 46 0.61
94 4 0.05
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (91 bp):
TTCAAAGTTTAGAAAAATCGAACAAAAATCAAAAGTATCAATACCTTCAAAAAGTATCGATACCT
TGCCTGGTATCGATACCATTTTAAGC
Found at i:36226112 original size:23 final size:21
Alignment explanation
Indices: 36226087--36226141 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
36226077 AAAAGCCTGA
* *
36226087 AAATCTAATATTTAAAAATCGTA
1 AAATCTAAAAATT-AAAATC-TA
*
36226110 AAATCTAAAAATTAAGATCTA
1 AAATCTAAAAATTAAAATCTA
36226131 AAATCTAAAAA
1 AAATCTAAAAA
36226142 AAAGGAATCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 13 0.45
22 5 0.17
23 11 0.38
ACGTcount: A:0.58, C:0.09, G:0.04, T:0.29
Consensus pattern (21 bp):
AAATCTAAAAATTAAAATCTA
Found at i:36230203 original size:46 final size:44
Alignment explanation
Indices: 36230150--36230325 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 44
36230140 TATTTGGGCA
36230150 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
36230196 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
36230243 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
36230289 CCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36230326 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:36230305 original size:93 final size:93
Alignment explanation
Indices: 36230146--36230317 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
36230136 AGGATATTTG
* *
36230146 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
36230211 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTAAGTCCGAGTTCGAGAGATGTAACTA
* * *
36230239 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
36230304 TTAAGTCCGAGTTC
66 TTAAGTCCGAGTTC
36230318 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTAAGTCCGAGTTCGAGAGATGTAACTA
Found at i:36235364 original size:19 final size:19
Alignment explanation
Indices: 36235328--36235366 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36235318 TTTTCATCAT
* *
36235328 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
36235347 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
36235366 A
1 A
36235367 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:36235916 original size:28 final size:28
Alignment explanation
Indices: 36235819--36235919 Score: 107
Period size: 27 Copynumber: 3.6 Consensus size: 28
36235809 ATACAGAAAA
* * *
36235819 TGTGACATAGTCACCAGATACAGATATTT
1 TGTGGCATAGCCACCAGA-ACAGATAATT
*
36235848 TGTGGCAGT-GCCACCAGAACAGAT-ATA
1 TGTGGCA-TAGCCACCAGAACAGATAATT
* **
36235875 CGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCATAGCCACCAGAACAGATAATT
36235903 TGTGGCATAGCCACCAG
1 TGTGGCATAGCCACCAG
36235920 GATGCTCCCC
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
27 22 0.37
28 22 0.37
29 14 0.24
30 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
TGTGGCATAGCCACCAGAACAGATAATT
Found at i:36236072 original size:28 final size:28
Alignment explanation
Indices: 36236025--36236089 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36236015 AAATTAACCC
*
36236025 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
36236053 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
36236081 TAGGGGTAT
1 TAGGGGTAT
36236090 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:36241960 original size:79 final size:79
Alignment explanation
Indices: 36241810--36242027 Score: 221
Period size: 79 Copynumber: 2.7 Consensus size: 79
36241800 AAATCACGTA
* * * * * *
36241810 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCAG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAG
36241874 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
36241889 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATA
* *
36241952 GTATCTCGCAGAAATG
64 GTAACTCGCACAAATG
* * * *
36241968 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
36242028 CATCATTCAA
Statistics
Matches: 117, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 66 0.56
80 48 0.41
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:36242027 original size:40 final size:40
Alignment explanation
Indices: 36241824--36242027 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
36241814 CGGAATTTAA
** *
36241824 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36241864 CCAGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36241904 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36241943 CCGGA-ATTAGTATCTCGCAGAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36241983 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36242023 CCGGA
1 CCGGA
36242028 CATCATTCAA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 91 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36250035 original size:79 final size:82
Alignment explanation
Indices: 36249924--36250108 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
36249914 GCTACTCGTT
* *
36249924 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
36249987 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
36250004 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36250067 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36250084 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36250109 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36250108 original size:40 final size:40
Alignment explanation
Indices: 36249905--36250108 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
36249895 CGGAATTTAA
** *
36249905 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36249945 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36249985 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36250024 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36250064 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36250104 CCGGA
1 CCGGA
36250109 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36262182 original size:39 final size:40
Alignment explanation
Indices: 36262139--36262250 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 40
36262129 TCCTCGTTCA
* * *
36262139 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
*
36262178 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
*
36262218 AATGCCTTCGGGACTTAACCCGGATTTAA-AACT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACT
36262251 TGATTTCATC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
39 39 0.58
40 28 0.42
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
Found at i:36269854 original size:40 final size:40
Alignment explanation
Indices: 36269754--36269924 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
36269744 GCTCCTCGTT
* * *
36269754 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36269794 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36269833 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36269873 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
36269913 CAAATGCCTTCG
1 CAAATGCCTTCG
36269925 AATCTTAGTC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 79 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36269938 original size:80 final size:79
Alignment explanation
Indices: 36269754--36269978 Score: 213
Period size: 80 Copynumber: 2.8 Consensus size: 79
36269744 GCTCCTCGTT
* * * * * * *
36269754 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGAACTTAACCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
36269818 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
36269833 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGAACTTAACCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
36269898 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
** * * * *
36269913 CAAATGCCTTC-GAATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGAA-CTTAACCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
36269977 GA
63 GA
36269979 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAACCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:36273852 original size:30 final size:30
Alignment explanation
Indices: 36273783--36273840 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
36273773 TATAAAAAGA
36273783 AACGAGCTGAATGTAAGTTCAAATGAGCTC
1 AACGAGCTGAATGTAAGTTCAAATGAGCTC
*
36273813 AACGAGCTGAAT-TAAGTTCCAATGAGCT
1 AACGAGCTGAATGTAAGTTCAAATGAGCT
36273841 GAATGGAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (30 bp):
AACGAGCTGAATGTAAGTTCAAATGAGCTC
Found at i:36277973 original size:75 final size:75
Alignment explanation
Indices: 36277845--36277985 Score: 192
Period size: 75 Copynumber: 1.9 Consensus size: 75
36277835 GAACGAGTTT
* * * * *
36277845 ACCTGAAACAAATGGTTGGTAGGCCTTCACAACGTTGTCTAAAGACACACAGTCTTCTTCTGTGG
1 ACCTGAAACAAATGGCTGGTAGGCCTTCACAACATTGTCCAAAGACACACAGTCTCCTCCTGTGG
36277910 GATCCATGCC
66 GATCCATGCC
* * * * *
36277920 ACCTGAAATAGATGGCTGGTGGGCCTTCGCAACATTGTCCAAAGACACGCAGTCTCCTCCTGTGG
1 ACCTGAAACAAATGGCTGGTAGGCCTTCACAACATTGTCCAAAGACACACAGTCTCCTCCTGTGG
36277985 G
66 G
36277986 GTTTGATGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 56 1.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (75 bp):
ACCTGAAACAAATGGCTGGTAGGCCTTCACAACATTGTCCAAAGACACACAGTCTCCTCCTGTGG
GATCCATGCC
Found at i:36278829 original size:21 final size:21
Alignment explanation
Indices: 36278793--36278844 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
36278783 CAACGGTGGT
*
36278793 GGTGAGATTAGTTACTATAGC
1 GGTGAGATTAGATACTATAGC
* *
36278814 GGTGAGATTGGATACTGTAGC
1 GGTGAGATTAGATACTATAGC
* *
36278835 GATGACATTA
1 GGTGAGATTA
36278845 AAAACAGTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.31
Consensus pattern (21 bp):
GGTGAGATTAGATACTATAGC
Found at i:36282587 original size:7 final size:7
Alignment explanation
Indices: 36282575--36282604 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
36282565 ATGCTTGTGA
36282575 TATATGG
1 TATATGG
36282582 TATATGG
1 TATATGG
36282589 TATATGG
1 TATATGG
36282596 TATATGG
1 TATATGG
36282603 TA
1 TA
36282605 CTAACCCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (7 bp):
TATATGG
Found at i:36292248 original size:29 final size:29
Alignment explanation
Indices: 36292159--36292250 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
36292149 TCCAGGCACC
* * * *
36292159 GGTGATTACAATTTTAGGTACTTTGTAACT
1 GGTGATTATAGTTTCAGGTACTATGT-ACT
* * * * *
36292189 -GTG-TTATAGTTCCAGGCACTCTGTGCC
1 GGTGATTATAGTTTCAGGTACTATGTACT
36292216 GGTGATTATAGTTTCAGGTACTATGTACT
1 GGTGATTATAGTTTCAGGTACTATGTACT
36292245 GGTGAT
1 GGTGAT
36292251 GGATACCATA
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
27 1 0.02
28 18 0.38
29 28 0.60
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (29 bp):
GGTGATTATAGTTTCAGGTACTATGTACT
Found at i:36297225 original size:19 final size:19
Alignment explanation
Indices: 36297203--36297240 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36297193 CGATTTGGGT
36297203 TCTCAAGCCCAATTTTCAA
1 TCTCAAGCCCAATTTTCAA
*
36297222 TCTCAAGTCCAATTTTCAA
1 TCTCAAGCCCAATTTTCAA
36297241 GTCCAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (19 bp):
TCTCAAGCCCAATTTTCAA
Found at i:36297240 original size:13 final size:13
Alignment explanation
Indices: 36297224--36297248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36297214 ATTTTCAATC
36297224 TCAAGTCCAATTT
1 TCAAGTCCAATTT
36297237 TCAAGTCCAATT
1 TCAAGTCCAATT
36297249 ACCTATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (13 bp):
TCAAGTCCAATTT
Found at i:36302633 original size:3 final size:3
Alignment explanation
Indices: 36302625--36302654 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
36302615 TTCATCTGCA
36302625 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36302655 AAAATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:36303990 original size:22 final size:22
Alignment explanation
Indices: 36303960--36304015 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
36303950 ATTTCCTCTC
**
36303960 AATTCCTCTCAATTTACTTTTAA
1 AATT-CTCTCAATTTACTTCCAA
*
36303983 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTACTTCCAA
36304005 AATTCTCTCAA
1 AATTCTCTCAA
36304016 ATCTATATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTCTCTCAATTTACTTCCAA
Found at i:36304042 original size:51 final size:51
Alignment explanation
Indices: 36303987--36304090 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
36303977 TTTTAAAATT
* * *
36303987 CTCTCAATTTCCTTCCAAAATTCTCTCAAATCTATATTTAATTTCAATTTC
1 CTCTCAATTCCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
36304038 CTCTCAATTCCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
1 CTCTCAATTCCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
36304089 CT
1 CT
36304091 TTTTTAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (51 bp):
CTCTCAATTCCCTTCAAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
Found at i:36304271 original size:26 final size:26
Alignment explanation
Indices: 36304242--36304297 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
36304232 AATTTTTAAA
* *
36304242 TATTATTTA-AGAATTTTTTATTTAT
1 TATTATTTAGAGAATTATTAATTTAT
*
36304267 GTATT-TTTAGATAATTATTAATTTAT
1 -TATTATTTAGAGAATTATTAATTTAT
36304293 TATTA
1 TATTA
36304298 GTTATAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (26 bp):
TATTATTTAGAGAATTATTAATTTAT
Found at i:36305247 original size:7 final size:7
Alignment explanation
Indices: 36305235--36305259 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36305225 ATTTGATTGA
36305235 TATTTAG
1 TATTTAG
36305242 TATTTAG
1 TATTTAG
36305249 TATTTAG
1 TATTTAG
36305256 TATT
1 TATT
36305260 ATGTATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:36305936 original size:18 final size:18
Alignment explanation
Indices: 36305910--36305944 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36305900 AGGTGCGTTT
*
36305910 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
36305928 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
36305945 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:36306416 original size:44 final size:45
Alignment explanation
Indices: 36306367--36306453 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
36306357 ATATTTTGAA
*
36306367 TATTTTGATATTATTTTATGTAAAAAAATAGAAA-TTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAAAAAAATA-AAAGTTTATTTGAGT
*
36306411 TATTTTGATATTATTTGATGTAATAAAATAAAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAAAAAAATAAAAGTTTATTTGA
36306454 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
43 3 0.08
44 31 0.79
45 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.49
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAAAAAAATAAAAGTTTATTTGAGT
Found at i:36306513 original size:30 final size:30
Alignment explanation
Indices: 36306479--36306584 Score: 109
Period size: 30 Copynumber: 3.7 Consensus size: 30
36306469 AACCTAATTT
36306479 AACCCTAAACCCTAACTTAAAATAATTAAA
1 AACCCTAAACCCTAACTTAAAATAATTAAA
* * **
36306509 AACCCAAAACCATAACTTAATTTAATTAAA
1 AACCCTAAACCCTAACTTAAAATAATTAAA
*
36306539 AACCCT-AA-CCTAA-TT----CAATTAAA
1 AACCCTAAACCCTAACTTAAAATAATTAAA
36306562 AACCCTAAACCCTTAACTTAAAA
1 AACCCTAAACCC-TAACTTAAAA
36306585 ACCCTAACCT
Statistics
Matches: 61, Mismatches: 7, Indels: 15
0.73 0.08 0.18
Matches are distributed among these distances:
23 13 0.21
24 2 0.03
25 2 0.03
26 3 0.05
27 4 0.07
28 4 0.07
29 2 0.03
30 31 0.51
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (30 bp):
AACCCTAAACCCTAACTTAAAATAATTAAA
Found at i:36306530 original size:53 final size:54
Alignment explanation
Indices: 36306461--36307003 Score: 137
Period size: 51 Copynumber: 11.0 Consensus size: 54
36306451 TGATGTAATA
* * ** *
36306461 AAAACCCTAACCTAATTTAACCCTAAACCCTAACTTAAAAT-AATTAAAAACCC-
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCT-AAATCAATTAAAAACCCT
** *
36306514 AAAACCATAACTTAATTTAATTAAAAACCCTAACCTAATTCAATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* * *
36306568 -AAACC----CTTAACTT----AAAAACCCTAACCTAATTTAATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* *
36306613 --AGCC-TAATTTAA-TT----AAAAACCCTAAACCCT---T-AATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCT-AA-CCTAAATCAATTAAAAACCCT
* * * ** *
36306657 --AACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAA-C--TTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCT-AA-CCTAAATCAATTAAAAACCCT
* * * * *
36306708 --AACC-TAATTTAA-TTAA--AAACCCTAGCCTAACCTAATTTAATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAA---AACCCTAACCTAAATCAATTAAAAACCCT
* * *
36306759 --AACC-TAATTTAA-TT----AAAAACCCTAGCCTAAATTAATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* * * ** * *
36306805 AAACCCTTAA-TTAA--AAACC-CTAACCCTAACCTAATTCAATTAAAAAGCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* * *
36306855 -AAACC----CTTAACTT----AAAAACCCTAACCTAATTTAATTAAAAACCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* * ** * * *
36306900 --AGCC-TAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAGCCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
* * ** * *
36306951 --AGCC-TAACCTAATTTAATTAAAAACCCTAACCTAATTCAATTAAAAATCCT
1 AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
36307002 AA
1 AA
36307004 CCCTTAACTT
Statistics
Matches: 398, Mismatches: 49, Indels: 86
0.75 0.09 0.16
Matches are distributed among these distances:
44 22 0.06
45 65 0.16
46 41 0.10
47 15 0.04
48 14 0.04
49 22 0.06
50 51 0.13
51 119 0.30
52 3 0.01
53 46 0.12
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.27
Consensus pattern (54 bp):
AAAACCATAACTTAATTTAACCAAAAACCCTAACCTAAATCAATTAAAAACCCT
Found at i:36306605 original size:28 final size:23
Alignment explanation
Indices: 36306514--36307812 Score: 1151
Period size: 23 Copynumber: 54.4 Consensus size: 23
36306504 TTAAAAACCC
* *
36306514 AAAACCATAACTTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36306537 AAAACCCTAACCTAATTCAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36306560 AAAACCCTAAACC---CTTAACTTA
1 AAAACCCT-AACCTAATTTAA-TTA
36306582 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36306605 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36306628 AAAACCCTAAACCCTTAA-TTAA--A
1 AAAACCCT-AA-CC-TAATTTAATTA
*
36306651 AACCCTAACCCTAACCTAATTCAATTA
1 AA----AACCCTAACCTAATTTAATTA
*
36306678 AAAACCCTAAACC---CTTAACTTA
1 AAAACCCT-AACCTAATTTAA-TTA
36306700 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36306723 AAAACCCTAGCCTAACCTAATTTAATTA
1 AAAA--C---CCTAACCTAATTTAATTA
36306751 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
* *
36306774 AAAACCCTAGCCTAAATTAATTA
1 AAAACCCTAACCTAATTTAATTA
36306797 AAAACCCTAAACCCTTAA-TTAA--A
1 AAAACCCT-AA-CC-TAATTTAATTA
*
36306820 AACCCTAACCCTAACCTAATTCAATTA
1 AA----AACCCTAACCTAATTTAATTA
* *
36306847 AAAAGCCTAAACC---CTTAACTTA
1 AAAACCCT-AACCTAATTTAA-TTA
36306869 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36306892 AAAACCCTAGCCTAACCTAATTTAATTA
1 AAAA--C---CCTAACCTAATTTAATTA
36306920 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36306943 AAAGCCCTAGCCTAACCTAATTTAATTA
1 AAA-----ACCCTAACCTAATTTAATTA
*
36306971 AAAACCCTAACCTAATTCAATTA
1 AAAACCCTAACCTAATTTAATTA
* *
36306994 AAAATCCTAACC---CTTAACTTA
1 AAAACCCTAACCTAATTTAA-TTA
36307015 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
* * *
36307038 AAAACCTTAGCCTAATTTAATCA
1 AAAACCCTAACCTAATTTAATTA
*
36307061 AAAACCCTACCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307084 AAAACCCTAAACC---CTTAACTTTA
1 AAAACCCT-AACCTAATTTAA--TTA
*
36307107 AAAACCCTAACCTAATTTACTTA
1 AAAACCCTAACCTAATTTAATTA
*
36307130 AAAACCCTAGCCTAACCAAATTTAATTA
1 AAAA--C---CCTAACCTAATTTAATTA
36307158 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36307181 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307204 AAAACCCTAAACC---CTTAATTA
1 AAAACCCT-AACCTAATTTAATTA
** *
36307225 AAAACCCTAACCCTAACCCTAACATA
1 AAAACCCTAA-CCTAA-TTTAA-TTA
***** *
36307251 ATTGAATTAAAAACCTTAAACCCTTAACTTA
1 A---AAACCCTAACC-T-AA--TTTAA-TTA
36307282 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36307305 AAAACCCTAGTCTAACCTAATTTAATTA
1 AAAA-CC----CTAACCTAATTTAATTA
36307333 AAAACCCTAAACCCTTAA-TTAA--A
1 AAAACCCT-AA-CC-TAATTTAATTA
*
36307356 AACCCTAACCCTAACCTAATTCAATTA
1 AA----AACCCTAACCTAATTTAATTA
*
36307383 AAAATCCTAAACC---TTTAACTTA
1 AAAACCCT-AACCTAATTTAA-TTA
36307405 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
* *
36307428 AAAACTCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307451 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307474 AAAACACTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36307497 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307520 AAAACCCTAGCCTAATTTAATT-
1 AAAACCCTAACCTAATTTAATTA
36307542 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307565 AAAACCCAAAACCCTTAA-TTAA--A
1 AAAACCC-TAA-CC-TAATTTAATTA
36307588 AACCCTAACCCTAACCTAATTTAATTA
1 AA----AACCCTAACCTAATTTAATTA
* *
36307615 AAAACCCTAGCTTAATTTAATT-
1 AAAACCCTAACCTAATTTAATTA
36307637 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307660 AAAATCCTAACCTAATTTAATTAAAAA
1 AAAACCCTAACCTAATTTAATT----A
*
36307687 CCATAAACCCTAACATAATTTAATTA
1 --A-AAACCCTAACCTAATTTAATTA
*
36307713 AAAA-CCTAGCCTAATTTAATT-
1 AAAACCCTAACCTAATTTAATTA
36307734 AAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307757 CAAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
*
36307780 AAAACCCTAGCCTAATTTAATTA
1 AAAACCCTAACCTAATTTAATTA
36307803 AAAACCCTAA
1 AAAACCCTAA
36307813 ACCCTTAACT
Statistics
Matches: 1071, Mismatches: 86, Indels: 238
0.77 0.06 0.17
Matches are distributed among these distances:
20 5 0.00
21 68 0.06
22 118 0.11
23 537 0.50
24 69 0.06
25 55 0.05
26 29 0.03
27 39 0.04
28 115 0.11
29 6 0.01
30 21 0.02
31 9 0.01
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (23 bp):
AAAACCCTAACCTAATTTAATTA
Found at i:36306704 original size:118 final size:115
Alignment explanation
Indices: 36306539--36307847 Score: 1119
Period size: 118 Copynumber: 11.1 Consensus size: 115
36306529 TTTAATTAAA
* *
36306539 AACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTTTAA-TTAAAAACCCTAACCTAATTTAATT
*
36306604 AAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCT
64 AAAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTTAATTAAAAACCCT
* *
36306657 AACCCTAACCTAATTCAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTTTAA-TTAAAAACCCTAACCTAATTTAATT
36306722 AAAAACCCTAGCCTAACCTAATTTAATTAAAAACCCTAA-CC-TAATTTAATTAAA----
64 AAAAA--C---CCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-TTAA--AAACCCT
* * *
36306776 AACCCTAGCCTAAATTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTTTAATTAAAAACCCTAA-CCTAA--T--TT
* * *
36306841 CAATTAAAAAGCCTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCT
60 -AATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAACC---CTTAATTAAAAACCCT
* *
36306900 -AGCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAGCCCTAGCCTAACCTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC---TTTAATTAAAA-----ACCCTAACCTAAT
* *
36306964 TTAATTAAAAACCCTAACCTAATTCAATTAAAAATCCTAACCCTTAACTT--AAA----
58 TTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-TTAAAAACCCT
* * * *
36307017 AACCCTAACCTAATTTAATTAAAAACCTTAGCCTAATTTAATCAAAAACCCTACCCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC---TTTAATTAAAAACCCTAACCTAATTTAAT
* * *
36307082 TAAAAACCCTAAACC---CTTAACTTTAAAAACCCTAACCTAATTTACTTAAAAACCCT
63 TAAAAACCCT-AACCTAATTTAA--TTAAAAACCCTAACC---CTTAATTAAAAACCCT
* *
36307138 -AGCCTAACCAAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC---TTTAATTAAAAACCCTAACCTAATTTAAT
*
36307202 TAAAAACCCTAAACC---CTTAATTAAAAACCCTAACCC-----T---AACCCT
63 TAAAAACCCT-AACCTAATTTAATTAAAAACCCTAACCCTTAATTAAAAACCCT
* * *
36307245 AA--C--A--TAATTGAATTAAAAACCTTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTTTAA-TTAAAAACCCTAACCTAATTTAATT
36307304 AAAAACCCTAGTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCT
64 AAAAA-CC----CTAACCTAATTTAATTAAAAACCCT-AACCCTTAATTAAAAACCCT
* *
36307362 AACCCTAACCTAATTCAATTAAAAATCCTAAACCTTTAACTTAAAAACCCTAACCTAATTTAATT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCTTTAA-TTAAAAACCCTAACCTAATTTAATT
* * *
36307427 AAAAACTCTAGCCTAATTTAATTAAAAACCCT-AGCC-TAATTTAATTAAA----
64 AAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAA-TTAA--AAACCCT
* *
36307476 AACACTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC---TTTAATTAAAAACCCTAACCTAATTTAAT
*
36307541 T-AAAACCCTAACCTAATTTAATTAAAAACCCAAAACCCTTAATTAAAAACCCT
63 TAAAAACCCTAACCTAATTTAATTAAAAACCC-TAACCCTTAATTAAAAACCCT
* *
36307594 AACCCTAACCTAATTTAATTAAAAACCCTAGCTTAATTTAATT-AAAACCCTAACCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAC---CTTTAATTAAAAACCCTAACCTAATTTAAT
* * * * ****
36307658 TAAAAATCCTAACCTAATTTAATTAAAAACCATAAACCC-TAACATAATTTAATTAA
63 TAAAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTTAA-TTAA--AAACCCT
* * *
36307714 AAACCTAGCCTAATTTAATT-AAAACCCTAACCTAATTTAATTACAAACCCTAACCTAATTTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC---TTTAATTAAAAACCCTAACCTAATTTAAT
* *
36307778 TAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTTTAAAAAGCCT
63 TAAAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTTAA--TTAAAAACCCT
* *
36307834 AACCTTAACGTAAT
1 AACCCTAACCTAAT
36307848 GTTAGATTTC
Statistics
Matches: 1001, Mismatches: 87, Indels: 204
0.77 0.07 0.16
Matches are distributed among these distances:
100 4 0.00
101 30 0.03
102 18 0.02
103 4 0.00
104 1 0.00
105 4 0.00
106 3 0.00
107 6 0.01
108 16 0.02
109 5 0.00
110 1 0.00
111 3 0.00
113 44 0.04
114 62 0.06
115 29 0.03
116 22 0.02
117 42 0.04
118 253 0.25
119 63 0.06
120 177 0.18
121 14 0.01
122 18 0.02
123 120 0.12
124 21 0.02
125 26 0.03
126 3 0.00
127 1 0.00
129 5 0.00
130 6 0.01
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (115 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAACCTTTAATTAAAAACCCTAACCTAATTTAATTAA
AAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTAATTAAAAACCCT
Found at i:36306781 original size:169 final size:167
Alignment explanation
Indices: 36306530--36307847 Score: 974
Period size: 169 Copynumber: 7.9 Consensus size: 167
36306520 ATAACTTAAT
* *
36306530 TTAA-TTAAAAACCCTAACCTAATTCAATTAAAAACCCTA---AACC---CTTAACTTAAAAACC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCTAACCTAATTTAA-TTAAAAACC
36306588 CTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAA
65 CTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAA
36306653 CCCTAACCCTAACCTAATTCAATTAAAAACCCTAAACCC
130 CCCTAACCCTAACCTAATTCAATTAAAAACCCT-AACCC
36306692 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAACCTAATTTAATTAAAAACC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA-CCTAACCTAATTTAATTAAAAACC
*
36306757 CTAACCTAATTTAATTAAAAACCCTAGCCTAAATTAATTAAAAACCCTAAACCCTTAATTAAAAA
65 CTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAA
*
36306822 CCCTAACCCTAACCTAATTCAATTAAAAAGCCTAAACCC
130 CCCTAACCCTAACCTAATTCAATTAAAAACCCT-AACCC
36306861 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAACCTAATTTAATTAAAAACC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTA-CCTAACCTAATTTAATTAAAAACC
* *
36306926 CTAACCTAATTTAATTAAAAGCCCTAGCCTAACCTAATTTAATTAAAAACCCT-AACCTAATTCA
65 CTAACCTAATTTAATTAAAAACCCTAG-----CCTAATTTAATTAAAAACCCTAAACC--CTT-A
* *
36306990 ATTAAAAATCCTAACCCT----TAA--C--TTAAAAACCCTAACCTAAT
122 ATTAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAACC---C
* * *
36307031 TTAA-TTAAAAACCTTAGCCTAATTTAATCAAAAACCCTA-C---CCTAATTTAATTAAAAACCC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCTAACCTAATTTAATTAAAAACCC
* * * *
36307091 TAAACC---CTTAACTTTAAAAACCCTAACCTAATTTACTTAAAAACCCTAGCCTAACCAAATTT
66 T-AACCTAATTTAA--TTAAAAACCCTAGCCTAATTTAATTAAAAACCCTA----AACC---CTT
*
36307153 AATTAAAAACCCTAA-CCTAA--T--TT-AATTAAAAACCCTAACCTAAT
121 AATTAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAACC---C
*
36307197 TTAA-TTAAAAACCCTAAACC---CTTAATTAAAAACCCTAACCCTAACCCTAACATAATTGAAT
1 TTAACTTAAAAACCCT-AACCTAATTTAATTAAAAACCCT-A-CCTAA-CCT-A-AT--TT-AAT
* * *
36307258 TAAAAACCTTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGTCTAA
57 TAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAGCCTAATTTAATTAAAAACCCTA----AA
* *
36307320 CCTAATTTAATTAAAAACCCT-A----AACC--CTT-AATTAAAAACCCTAACCC
116 CC---CTTAATTAAAAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAACCC
*
36307367 TAACCTAATTCAATTAAAAATCCTAAACC---TTTAACTTAAAAA--C--CCTAACCTAATTTAA
1 T----TAA--C--TTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTACCTAACCTAATTTAA
* * *
36307425 TTAAAAACTCTAGCCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACACT-AA-CC-T
56 TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTT
* *
36307487 AATTTAATTAAA----AACCCTAACCTAATTTAATTAAAAACCCT-AGCC
121 AA-TTAA--AAACCCTAACCCTAACCTAATTCAATTAAAAACCCTAACCC
* *
36307532 -TAATTTAATTAAAACCCTAACCTAATTTAATTAAAAACCC-A--AAACCCTTAA-TTAA--AAA
1 TTAACTT-A--AAAACCCTAACCTAATTTAATTAAAAACCCTACCTAA-CC-TAATTTAATTAAA
* *
36307590 CCCTAACCCTAACCTAATTTAATTAAAAACCCTAGCTTAATTTAATT-AAAACCCT-AACCTAAT
61 ----AACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACC---C
* ** ** **
36307653 TTAATTAAAAATCCTAA-CCTAATTTAATT-AAAAACCATAAACCCTAACATAAT
119 TTAATTAAAAACCCTAACCCTAACCTAATTCAATTA--A-AAACCCTAAC---CC
* *
36307706 TTAA-TTAAAAA-CCTAGCCTAATTTAATT-AAAA--C--CCTAACCTAATTTAATTACAAACCC
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCTAACCTAATTTAATTAAAAACCC
36307764 TAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTTTAAAA
66 TAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAA--TTAAAA
* * *
36307829 AGCCTAACCTTAACGTAAT
129 ACCCTAACCCTAACCTAAT
36307848 GTTAGATTTC
Statistics
Matches: 975, Mismatches: 65, Indels: 227
0.77 0.05 0.18
Matches are distributed among these distances:
156 2 0.00
157 1 0.00
158 4 0.00
159 31 0.03
160 17 0.02
161 7 0.01
162 18 0.02
163 54 0.06
164 111 0.11
165 59 0.06
166 69 0.07
167 42 0.04
168 36 0.04
169 277 0.28
170 37 0.04
171 12 0.01
172 5 0.01
173 29 0.03
174 31 0.03
175 66 0.07
176 40 0.04
178 1 0.00
179 19 0.02
180 7 0.01
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.28
Consensus pattern (167 bp):
TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCTAACCTAATTTAATTAAAAACCC
TAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAAC
CCTAACCCTAACCTAATTCAATTAAAAACCCTAACCC
Found at i:36307253 original size:56 final size:57
Alignment explanation
Indices: 36307183--36307293 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 57
36307173 TTTAATTAAA
* *
36307183 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAACCCTAACCCT
1 AACCCTAACATAATTGAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCT
*
36307239 AACCCTAACATAATTGAATTAAAAACCTTAAACCCTTAACTTAAAAACCCTAACC
1 AACCCTAACATAATTGAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACC
36307294 TAATTTAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 36 0.71
57 15 0.29
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (57 bp):
AACCCTAACATAATTGAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCT
Found at i:36307355 original size:129 final size:119
Alignment explanation
Indices: 36306826--36307847 Score: 767
Period size: 120 Copynumber: 8.5 Consensus size: 119
36306816 TAAAAACCCT
* *
36306826 AACC-CTAACCTAATTCAATTAAAAAGCCTAAACCCTTAACTTAAAAACCCTAA-CCTAA--T--
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAAAAACCCTAACCCTAACCTAA
* *
36306885 TT-AATTAAAAACCCTAGCCTAACCTAATTTAA-TTAAAAACCCTAACCTAATTTAATTAAA
65 TTCAATTAAAAATCCTA----AACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAA
* * *
36306945 AGCCCTAGCCTAACCTAATTTAATTAAAAACCCT-AACCTAATTCAATTAAAAATCCTAACCCT-
1 A-ACCT---CTAACCTAATTTAATTAAAAACCCTAAACC--CTT-AATTAAAAACCCTAACCCTA
* * * * *
36307008 ---TAA--C--TTAAAAACCCT-AACCTAATTTAA-TTAAAAACCTTAGCCTAATTTAATCAAA
59 ACCTAATTCAATTAAAAATCCTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAA
*
36307063 AACC-CTACCCTAATTTAATTAAAAACCCTAAACCCTTAACTTTAAAAACCCTAA-CCTAA--T-
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA--TTAAAAACCCTAACCCTAACCTA
* * *
36307123 -TT-ACTTAAAAACCCTAGCCTAACCAAATTTAA-TTAAAAACCCTAACCTAATTTAATTAAA
64 ATTCAATTAAAAATCCTA----AACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAA
36307183 AACC-CTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCCTAA
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAA--C---
*
36307247 CATAATTGAATTAAAAA-CCTTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAA
61 C-TAATTCAATTAAAAATCC-TAAACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAA
36307307 AACCCTAGTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACC
1 AA-CC---TCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACC
*
36307372 TAATTCAATTAAAAATCCTAAACCTTTAACTTAAAAACCCTAACCTAATTTAATTAAA
62 TAATTCAATTAAAAATCCTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAA
* * *
36307430 AA-CTCTAGCCTAATTTAATTAAAAACCCT--AGCC-TAATTTAATTAAA----AACACTAACCT
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAA--AAACCCTAACCCTAACCT
* * * *
36307487 AATTTAATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAGCCTAATTTAATT-AA
63 AATTCAATTAAAAATCCTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAA
*
36307544 AACC-CTAACCTAATTTAATTAAAAACCCAAAACCCTTAATTAAAAACCCTAACCCTAACCTAAT
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTAAT
* * * *
36307608 TTAATTAAAAACCCT--A-GCTTAATTTAATTAAAACCCTAACCTAATTTAATTAAA
66 TCAATTAAAAATCCTAAACCCTTAACTT-A--AAAACCCTAACCTAATTTAATTAAA
* * * * **** * *
36307662 AATC-CTAACCTAATTTAATTAAAAACCATAAACCC-TAACATAATTTAATTAAAAACCTAGCCT
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA-TTAA--AAACCCTAACCCTAACCT
* * * *
36307725 AATTTAATT-AAAACCCT-AACCTAATTTAA-TTACAAACCCTAACCTAATTTAATTAAA
63 AATTCAATTAAAAATCCTAAACC---CTTAACTTAAAAACCCTAACCTAATTTAATTAAA
* * * *
36307782 AACC-CTAGCCTAATTTAATTAAAAACCCTAAACCCTTAACTTTAAAAAGCCTAACCTTAACGTA
1 AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAA--TTAAAAACCCTAACCCTAACCTA
36307846 AT
64 AT
36307848 GTTAGATTTC
Statistics
Matches: 766, Mismatches: 62, Indels: 149
0.78 0.06 0.15
Matches are distributed among these distances:
111 2 0.00
112 5 0.01
113 44 0.06
114 63 0.08
115 40 0.05
116 19 0.02
117 30 0.04
118 144 0.19
119 14 0.02
120 165 0.22
121 4 0.01
122 4 0.01
123 76 0.10
124 61 0.08
125 16 0.02
126 9 0.01
127 2 0.00
129 58 0.08
130 10 0.01
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (119 bp):
AACCTCTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAAAACCCTAACCCTAACCTAAT
TCAATTAAAAATCCTAAACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAA
Found at i:36307826 original size:23 final size:21
Alignment explanation
Indices: 36307800--36307842 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
36307790 CCTAATTTAA
36307800 TTAAAAACCCTAAACCCTTAACT
1 TTAAAAACCCT-AA-CCTTAACT
*
36307823 TTAAAAAGCCTAACCTTAAC
1 TTAAAAACCCTAACCTTAAC
36307843 GTAATGTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.44, C:0.28, G:0.02, T:0.26
Consensus pattern (21 bp):
TTAAAAACCCTAACCTTAACT
Found at i:36307978 original size:116 final size:116
Alignment explanation
Indices: 36307838--36308061 Score: 367
Period size: 116 Copynumber: 1.9 Consensus size: 116
36307828 AAGCCTAACC
* *
36307838 TTAACGTAATGTTAGATTTCGAAAAATATTTTGACTGGTACTAACAAATAATAATTTTACATAAT
1 TTAACATAATGTTAGATTTCGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAAT
* *
36307903 TTGATAATTTTATTAACTATTAATACAATTTTTTGACTTAATAATTTTACA
66 TTGATAATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACA
* * * **
36307954 TTAACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTGTATGTAAT
1 TTAACATAATGTTAGATTTCGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAAT
36308019 TTGATAATTTTACTAACCATTAATACAATTTTTTGACTTAATA
66 TTGATAATTTTACTAACCATTAATACAATTTTTTGACTTAATA
36308062 CAATTTATCA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 99 1.00
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.43
Consensus pattern (116 bp):
TTAACATAATGTTAGATTTCGAAAAATATTTTGACTGGTACTAACAAATAATAATTGTACATAAT
TTGATAATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACA
Found at i:36308078 original size:17 final size:18
Alignment explanation
Indices: 36308037--36308078 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
36308027 TTTACTAACC
* *
36308037 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
36308055 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
36308072 ATTAATA
1 ATTAATA
36308079 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:36311264 original size:125 final size:126
Alignment explanation
Indices: 36311037--36311389 Score: 523
Period size: 126 Copynumber: 2.8 Consensus size: 126
36311027 CCCAAACATG
*
36311037 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGT
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
36311102 TAGAAGCGATTTTATATTATTTGCTCAGAAACATCAAAAAAA-AAATATTTCTTAC-ATGAC
66 TAGAAGCGATTTTATATTATTTTCTCAGAAACGTCAAAAAAATAAATATTTCTT-CTATGAC
* * * * *
36311162 CTACTGTAGCAAAAACGCG-CTGACGAGGCCGCAATTTAACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * * *
36311226 CTAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAAAAATAATTATTTCTTCTGTGGC
65 CTAGAAGCGATTTTATATTATTTTCTCAGAAACGTCAAAAAAATAAATATTTCTTCTATGAC
*
36311288 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATACCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
36311353 TAGAAGTGATTTTATATTATTTTATCAGAAATGTCAA
66 TAGAAGCGATTTTATATTATTTTCTCAGAAACGTCAA
36311390 CTCGAAATTA
Statistics
Matches: 202, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
124 1 0.00
125 97 0.48
126 103 0.51
127 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATATTATTTTCTCAGAAACGTCAAAAAAATAAATATTTCTTCTATGAC
Found at i:36312876 original size:6 final size:6
Alignment explanation
Indices: 36312865--36312890 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
36312855 GTATTTTCTA
36312865 TGGTTC TGGTTC TGGTTC TGGTTC TG
1 TGGTTC TGGTTC TGGTTC TGGTTC TG
36312891 CTAGGGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.35, T:0.50
Consensus pattern (6 bp):
TGGTTC
Done.