Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 128 of 199
Found at i:37039995 original size:274 final size:275
Alignment explanation
Indices: 37039492--37039998 Score: 697
Period size: 274 Copynumber: 1.8 Consensus size: 275
37039482 ATGTTGCATC
* * *
37039492 TAGAGCTTGTATTTTGGTAGTGCTGCAAACAAATTGGTGACATTTTAGTAGGGACAGCTCAGGGT
1 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATCGGTGACATTTTAGTAGGGACA-CTCAGGGT
* **
37039557 ACAAAGTTGTATGACCTTTCGGTTTAGCTGCTGGATCATCTTTTTAATCTGCCTTTAAGAATTTT
65 ACAAAGTTGTATGACCTTTCGATTTAGCTGCTGGATCATCTTTTTAATCCACCTTTAAGAATTTT
* * * *
37039622 GAGCATGGGTTTGCTGGAATTAGTTTGTGCATTAAAGAGATGAGATGGCTAATATTTAGTATTTA
130 GAGCACGGGTTTGCAGGAAGTAGTTTGTACATTAAAGAGATGAGATGGCTAATATTTAGTATTTA
* * * * *
37039687 GCGTCAAATGGTACTATCAAAGGTTATTATTGATGAAAACATTCACTTCCAGACATCTGAGATAA
195 GCATCAAAGGGTACAAACAAAGGTTATCATTGATGAAAACATTCACTTCCAGACATCTGAGATAA
37039752 CATATCATGTAGTATT
260 CATATCATGTAGTATT
* *
37039768 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATCGGTGAC-TTTTATTAGGGAC-TTCA-GGTA
1 TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATCGGTGACATTTTAGTAGGGACACTCAGGGTA
37039830 CAAAAGTTGTATGACCTTT-GATTTAGCTGCT-GACTCATC-TTTTAATTCCACCTTTAAGAA-T
66 C-AAAGTTGTATGACCTTTCGATTTAGCTGCTGGA-TCATCTTTTTAA-TCCACCTTTAAGAATT
* * * *
37039891 TT-AGCACGGCTAGTTTTGCAGGCAGTATTTTGTACCTTAAAGAGATGAGATGGCTAATATTTTG
128 TTGAGCACGG---G-TTTGCAGGAAGTAGTTTGTACATTAAAGAGATGAGATGGCTAATATTTAG
37039955 TATTTAGCATCAAAGGGTACAAACAAAGGTTATCATTGATGAAA
189 TATTTAGCATCAAAGGGTACAAACAAAGGTTATCATTGATGAAA
37039999 CCTTACATCT
Statistics
Matches: 203, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
270 6 0.03
271 11 0.05
272 33 0.16
273 21 0.10
274 82 0.40
275 12 0.06
276 38 0.19
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (275 bp):
TAGAGCATGAATTTTGGTAGTGCTGCAAACAAATCGGTGACATTTTAGTAGGGACACTCAGGGTA
CAAAGTTGTATGACCTTTCGATTTAGCTGCTGGATCATCTTTTTAATCCACCTTTAAGAATTTTG
AGCACGGGTTTGCAGGAAGTAGTTTGTACATTAAAGAGATGAGATGGCTAATATTTAGTATTTAG
CATCAAAGGGTACAAACAAAGGTTATCATTGATGAAAACATTCACTTCCAGACATCTGAGATAAC
ATATCATGTAGTATT
Found at i:37042535 original size:284 final size:284
Alignment explanation
Indices: 37042023--37042586 Score: 1067
Period size: 284 Copynumber: 2.0 Consensus size: 284
37042013 TACCCGTTGC
37042023 AACTTGATAGTCTGAGTTTCTTTCATGTCAGGAGAAACATAGTTTTCTTACTCATGAAGGATTGC
1 AACTTGATAGTCTGAGTTTCTTTCATGTCAGGAGAAACATAGTTTTCTTACTCATGAAGGATTGC
*
37042088 AAAAGCTTACTGTTACTGCCAACTCTCTATAGTTTAATCTAGTTTTGTAGTTATATTGTTAAAAA
66 AAAAGCTTACTGTTACTGCCAACTCTCTATAGTATAATCTAGTTTTGTAGTTATATTGTTAAAAA
37042153 AAGAGGTATGAATGTTGTCTAAATTAGCTGAAGCTATTTGCAGTTGGTCACCCCATGCATTTTCA
131 AAGAGGTATGAATGTTGTCTAAATTAGCTGAAGCTATTTGCAGTTGGTCACCCCATGCATTTTCA
* *
37042218 TTTCTATTGCCTTGACTTATGCACGTCAACTTCAAGACATGACTTTATCCATCACAAATTCTTGC
196 TTTCTATTGCCATGACTTATGCACGTAAACTTCAAGACATGACTTTATCCATCACAAATTCTTGC
37042283 AGGATGTTTGCTTGTCATCTACAA
261 AGGATGTTTGCTTGTCATCTACAA
37042307 AACTTGATAGTCTGAGTTTCTTTCATGTCAGGAGAAACATAGTTTTCTTACTCATGAAGGATTGC
1 AACTTGATAGTCTGAGTTTCTTTCATGTCAGGAGAAACATAGTTTTCTTACTCATGAAGGATTGC
37042372 AAAAGCTTACTGTTACTTG-CAACTCTCTATAGTATAATCTAGTTTTGTAGTTATATTGTTAAAA
66 AAAAGCTTACTGTTAC-TGCCAACTCTCTATAGTATAATCTAGTTTTGTAGTTATATTGTTAAAA
37042436 AAAGAGGTATGAATGTTGTCTAAATTAGCTGAAGCTATTTGCAGTTGGTCACCCCATGCATTTTC
130 AAAGAGGTATGAATGTTGTCTAAATTAGCTGAAGCTATTTGCAGTTGGTCACCCCATGCATTTTC
* *
37042501 ATTTCTATTGCCATGACTTATGCATGTAAACTTCAGGACATGACTTTATCCATCACAAATTCTTG
195 ATTTCTATTGCCATGACTTATGCACGTAAACTTCAAGACATGACTTTATCCATCACAAATTCTTG
37042566 CAGGATGTTTGCTTGTCATCT
260 CAGGATGTTTGCTTGTCATCT
37042587 GCAAGAGTTG
Statistics
Matches: 274, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
284 272 0.99
285 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (284 bp):
AACTTGATAGTCTGAGTTTCTTTCATGTCAGGAGAAACATAGTTTTCTTACTCATGAAGGATTGC
AAAAGCTTACTGTTACTGCCAACTCTCTATAGTATAATCTAGTTTTGTAGTTATATTGTTAAAAA
AAGAGGTATGAATGTTGTCTAAATTAGCTGAAGCTATTTGCAGTTGGTCACCCCATGCATTTTCA
TTTCTATTGCCATGACTTATGCACGTAAACTTCAAGACATGACTTTATCCATCACAAATTCTTGC
AGGATGTTTGCTTGTCATCTACAA
Found at i:37048274 original size:71 final size:71
Alignment explanation
Indices: 37048194--37048326 Score: 171
Period size: 71 Copynumber: 1.9 Consensus size: 71
37048184 TTATGAGTTG
* * *
37048194 CAAGTAATTCTTTC-ATGTACTACGAGCTACTTAATTTTTTAGAAGCC-TTTCATATTTTAAGTT
1 CAAGTAATTCTTTCTAT-TACTACAAACTACTTAATTTCTTAGAA-CCTTTTCATATTTTAAGTT
37048257 TTGTATTT
64 TTGTATTT
* * * *
37048265 CAAGTAATTCTTTCTATTGCTACAAATTAGTTAATTTCTTAGAACCTTTTCATGTTTTAAGT
1 CAAGTAATTCTTTCTATTACTACAAACTACTTAATTTCTTAGAACCTTTTCATATTTTAAGT
37048327 AATTCTTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
70 2 0.04
71 49 0.92
72 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47
Consensus pattern (71 bp):
CAAGTAATTCTTTCTATTACTACAAACTACTTAATTTCTTAGAACCTTTTCATATTTTAAGTTTT
GTATTT
Found at i:37048617 original size:57 final size:55
Alignment explanation
Indices: 37048548--37048675 Score: 150
Period size: 56 Copynumber: 2.3 Consensus size: 55
37048538 TTCAAGTTTT
* * *
37048548 AAGTAATTCTTTCATGTATTACT-AATTACTTACTTTCTTAACACTCTTTCATATTTG
1 AAGTAA-TCTTTCATGTATTA-TGAATTA-TTAATTTCTTAAAACTCTTCCATATTTG
* * *
37048605 AAGTAACTCTTTCATGTATTATGGATTATTAATTTCTTAAAACTCTTCCATGTTTT
1 AAGTAA-TCTTTCATGTATTATGAATTATTAATTTCTTAAAACTCTTCCATATTTG
37048661 AAGTAATACTTTCAT
1 AAGTAAT-CTTTCAT
37048676 ATTTTACGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
55 1 0.02
56 37 0.60
57 24 0.39
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.48
Consensus pattern (55 bp):
AAGTAATCTTTCATGTATTATGAATTATTAATTTCTTAAAACTCTTCCATATTTG
Found at i:37048666 original size:56 final size:56
Alignment explanation
Indices: 37048543--37048719 Score: 171
Period size: 57 Copynumber: 3.1 Consensus size: 56
37048533 ACACTTTCAA
* * *
37048543 GTTTTAAGTAATTCTTTCATGTATTACTAATTACTTACTTTCTTAACACTCTTTCAT
1 GTTTTAAGTAA-TCTTTCATGTATTACTAATTACTTAATTTCTTAAAACTCTTCCAT
* * *
37048600 ATTTGAAGTAACTCTTTCATGTATTA-TGGATTA-TTAATTTCTTAAAACTCTTCCAT
1 GTTTTAAGTAA-TCTTTCATGTATTACT-AATTACTTAATTTCTTAAAACTCTTCCAT
* * * * * * *
37048656 GTTTTAAGTAATACTTTCATATTTTACGAATAACTTAATTTATTAGAA-TCATTTCAT
1 GTTTTAAGTAAT-CTTTCATGTATTACTAATTACTTAATTTCTTAAAACTC-TTCCAT
37048713 GTTTTAA
1 GTTTTAA
37048720 TTGTCTTTTT
Statistics
Matches: 98, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
55 1 0.01
56 46 0.47
57 51 0.52
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.49
Consensus pattern (56 bp):
GTTTTAAGTAATCTTTCATGTATTACTAATTACTTAATTTCTTAAAACTCTTCCAT
Found at i:37053682 original size:21 final size:20
Alignment explanation
Indices: 37053658--37053714 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
37053648 GTGAGGGAGG
37053658 CACACGACCGTGTGTAGGTGA
1 CACA-GACCGTGTGTAGGTGA
*
37053679 CACATACCTGTGTGTAGGTGA
1 CACAGACC-GTGTGTAGGTGA
*
37053700 CACAAGTCCGTGTGT
1 CAC-AGACCGTGTGT
37053715 CCAGGGAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 3 0.10
21 25 0.81
22 3 0.10
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (20 bp):
CACAGACCGTGTGTAGGTGA
Found at i:37057208 original size:16 final size:17
Alignment explanation
Indices: 37057168--37057208 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
37057158 CATGATTCGC
37057168 TTATTAAACTAATTTAT
1 TTATTAAACTAATTTAT
*
37057185 TTGTTAAA-TAA-TTAT
1 TTATTAAACTAATTTAT
37057200 TTATATAAA
1 TTAT-TAAA
37057209 ATTGAGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 7 0.33
16 7 0.33
17 7 0.33
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTATTAAACTAATTTAT
Found at i:37079492 original size:19 final size:20
Alignment explanation
Indices: 37079470--37079508 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
37079460 TTTTTAAAGA
37079470 GTTGCATATT-TTTAATTTT
1 GTTGCATATTGTTTAATTTT
* *
37079489 GTTGGATATTGTTTTATTTT
1 GTTGCATATTGTTTAATTTT
37079509 TAGGCCTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.18, C:0.03, G:0.15, T:0.64
Consensus pattern (20 bp):
GTTGCATATTGTTTAATTTT
Found at i:37087420 original size:62 final size:63
Alignment explanation
Indices: 37087322--37087458 Score: 199
Period size: 61 Copynumber: 2.2 Consensus size: 63
37087312 GCCTAATAAT
*
37087322 AAATTTATCCCT-TCAATATTTACACATTCTCTCAATTTGATCCTAAATCTAAAAAAATTAAAC
1 AAATTTAGCCCTCTCAATATTTACACATTCTCTCAATTTGATCCTAAAT-TAAAAAAATTAAAC
* * * *
37087385 AAATTTAGCCCTCT-AATGTTT-CACATTCTCTCAATTTGATCGTAAATTTAAAAAATTCAAC
1 AAATTTAGCCCTCTCAATATTTACACATTCTCTCAATTTGATCCTAAATTAAAAAAATTAAAC
37087446 AAATTTAGCCCTC
1 AAATTTAGCCCTC
37087459 AACGTATACA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
61 25 0.37
62 25 0.37
63 17 0.25
64 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.36
Consensus pattern (63 bp):
AAATTTAGCCCTCTCAATATTTACACATTCTCTCAATTTGATCCTAAATTAAAAAAATTAAAC
Found at i:37091006 original size:11 final size:11
Alignment explanation
Indices: 37090981--37091020 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
37090971 ATTTCCCTTA
*
37090981 CTTTCCCTT-C
1 CTTTCCTTTCC
37090991 CTTTCCTTTCC
1 CTTTCCTTTCC
37091002 CTTTCCTTTCC
1 CTTTCCTTTCC
*
37091013 CTCTCCTT
1 CTTTCCTT
37091021 ACCCCAACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (11 bp):
CTTTCCTTTCC
Found at i:37091020 original size:16 final size:15
Alignment explanation
Indices: 37090981--37091012 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
37090971 ATTTCCCTTA
37090981 CTTTCCCTTCCTTTC
1 CTTTCCCTTCCTTTC
37090996 CTTTCCCTTTCCTTTC
1 CTTTCCC-TTCCTTTC
37091012 C
1 C
37091013 CTCTCCTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
CTTTCCCTTCCTTTC
Found at i:37091355 original size:15 final size:16
Alignment explanation
Indices: 37091318--37091360 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
37091308 AGTAATATCC
37091318 TATCCAAATCTGAAAT
1 TATCCAAATCTGAAAT
* * *
37091334 TACCCAATTCT-AGAT
1 TATCCAAATCTGAAAT
37091349 TATCCAAATCTG
1 TATCCAAATCTG
37091361 GAAAAAAAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (16 bp):
TATCCAAATCTGAAAT
Found at i:37096926 original size:18 final size:17
Alignment explanation
Indices: 37096903--37096947 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
37096893 GGTATATTTA
37096903 TTTTCTTTTTCTAGTTTT
1 TTTTCTTTTT-TAGTTTT
* *
37096921 TTTTCTCTCTTTATTTTT
1 TTTTCT-TTTTTAGTTTT
37096939 TTTTCTTTT
1 TTTTCTTTT
37096948 CGAAGTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 2 0.09
18 18 0.78
19 3 0.13
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTCTTTTTTAGTTTT
Found at i:37098806 original size:39 final size:40
Alignment explanation
Indices: 37098711--37098972 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
37098701 TTGAATGATG
*
37098711 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37098749 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37098790 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37098829 CCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37098868 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
37098907 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
37098946 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37098973 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 128 0.64
40 59 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37101038 original size:35 final size:37
Alignment explanation
Indices: 37100999--37101067 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
37100989 CCTATTATTA
37100999 TTATTAT-TATT-ATAAC-TATTTATATATATATCATC
1 TTATTATATATTAATAACTTA-TTATATATATATCATC
*
37101034 TTATTATATATTAATATCTTATTATATATATATC
1 TTATTATATATTAATAACTTATTATATATATATC
37101068 TATATATCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 7 0.23
36 4 0.13
37 17 0.57
38 2 0.07
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (37 bp):
TTATTATATATTAATAACTTATTATATATATATCATC
Found at i:37101054 original size:18 final size:20
Alignment explanation
Indices: 37101018--37101067 Score: 72
Period size: 18 Copynumber: 2.7 Consensus size: 20
37101008 TTATAACTAT
37101018 TTATATA-TATATCATCTTA
1 TTATATATTATATCATCTTA
37101037 TTATATATTA-AT-ATCTTA
1 TTATATATTATATCATCTTA
37101055 TTATATA-TATATC
1 TTATATATTATATC
37101068 TATATATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.07
18 15 0.54
19 9 0.32
20 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATATATTATATCATCTTA
Found at i:37104583 original size:8 final size:8
Alignment explanation
Indices: 37104570--37104622 Score: 70
Period size: 8 Copynumber: 6.2 Consensus size: 8
37104560 CAGACTAAAA
37104570 AAAAAATC
1 AAAAAATC
37104578 AAAAAATC
1 AAAAAATC
37104586 AAAAAAAAATC
1 ---AAAAAATC
37104597 AAAAAATC
1 AAAAAATC
*
37104605 AAAAAATA
1 AAAAAATC
37104613 AAAAAATC
1 AAAAAATC
37104621 AA
1 AA
37104623 GGTCAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
8 32 0.80
11 8 0.20
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:37104583 original size:11 final size:11
Alignment explanation
Indices: 37104567--37104602 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37104557 GTTCAGACTA
37104567 AAAAAAAAATC
1 AAAAAAAAATC
37104578 ---AAAAAATC
1 AAAAAAAAATC
37104586 AAAAAAAAATC
1 AAAAAAAAATC
37104597 AAAAAA
1 AAAAAA
37104603 TCAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 8 0.36
11 14 0.64
ACGTcount: A:0.83, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAAATC
Found at i:37104591 original size:19 final size:19
Alignment explanation
Indices: 37104567--37104610 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
37104557 GTTCAGACTA
37104567 AAAAAAAAATCAAAAAATC
1 AAAAAAAAATCAAAAAATC
37104586 AAAAAAAAATCAAAAAATC
1 AAAAAAAAATCAAAAAATC
37104605 AAAAAA
1 AAAAAA
37104611 TAAAAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (19 bp):
AAAAAAAAATCAAAAAATC
Found at i:37104643 original size:13 final size:13
Alignment explanation
Indices: 37104636--37104672 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
37104626 CAAAAATAGG
37104636 AGAAAAAAAAAGA
1 AGAAAAAAAAAGA
37104649 AGAAAAAAAAAGA
1 AGAAAAAAAAAGA
*
37104662 A-AAAGAAAAAG
1 AGAAAAAAAAAG
37104673 GAGAGGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAAAGA
Found at i:37104657 original size:16 final size:16
Alignment explanation
Indices: 37104638--37104671 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
37104628 AAAATAGGAG
*
37104638 AAAAAAA-AAGAAGAA
1 AAAAAAAGAAAAAGAA
37104653 AAAAAAAGAAAAAGAA
1 AAAAAAAGAAAAAGAA
37104669 AAA
1 AAA
37104672 GGAGAGGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAA
Found at i:37106847 original size:88 final size:88
Alignment explanation
Indices: 37106695--37107733 Score: 1873
Period size: 88 Copynumber: 11.8 Consensus size: 88
37106685 ATCGAAAATA
* *
37106695 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37106760 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
* *
37106783 AAACCTTGCTTCTCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37106848 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
* *
37106871 AAACCTTGCCTCTCTCGGTTGTGATGAAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
*
37106936 ACAGCGAAGTAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
37106959 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107024 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
* *
37107047 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTACCTTCCTACATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107112 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
* *
37107135 AAACCTTGCTTCTCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107200 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
37107223 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107288 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
37107311 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
*
37107376 ACAGCGAAGTAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
*
37107399 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT-AGAGACAAAAGATCTTGCTTTCCTGCATT
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGA-AGACAAAAGATCTTGCCTTCCTGCATT
37107463 GACAGCGAAGCAGGTCGAAGACAC
65 GACAGCGAAGCAGGTCGAAGACAC
37107487 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107552 ACAGCGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
*
37107575 AAACCTTGCCTCTCTCAGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
* *
37107640 AAAGTGAAGCAGGTCGAAGACAC
66 ACAGCGAAGCAGGTCGAAGACAC
* ** * *
37107663 AAACCTTGCCTCTCTCGGTTGTGAGGGAGCTGGTTGAAGACAGTAGATATTGCCTTCCTGCATCG
1 AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
37107728 ACAGCG
66 ACAGCG
37107734 GGGCAGATCA
Statistics
Matches: 914, Mismatches: 35, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
87 1 0.00
88 912 1.00
89 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (88 bp):
AAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTG
ACAGCGAAGCAGGTCGAAGACAC
Found at i:37107921 original size:95 final size:95
Alignment explanation
Indices: 37107754--37107982 Score: 395
Period size: 95 Copynumber: 2.4 Consensus size: 95
37107744 AATATGGCAG
37107754 ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAAATCGAAGATGGCAAATTTTACCTCC
1 ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAAATCGAAGATGGCAAATTTTACCTCC
* *
37107819 CTGTGACTACAGTGGAGTACATTGAAGCCA
66 CTATGACTACAGTAGAGTACATTGAAGCCA
* * *
37107849 ATAATTCTTTCTCTCTGGTTGGCAGTGGAATAGATTGAAAATCGAATATGGCAAATTTTACCTCC
1 ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAAATCGAAGATGGCAAATTTTACCTCC
**
37107914 CTATGACTACAGTAGAGTACATTGAAGCTG
66 CTATGACTACAGTAGAGTACATTGAAGCCA
37107944 ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAA
1 ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAA
37107983 GATTTCAGAT
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 125 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (95 bp):
ATAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAAATCGAAGATGGCAAATTTTACCTCC
CTATGACTACAGTAGAGTACATTGAAGCCA
Found at i:37108061 original size:44 final size:44
Alignment explanation
Indices: 37107967--37108086 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 44
37107957 CCTGGTTGGC
* * *
37107967 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCACCCTAAGCAGT
* * *
37108011 AGTGGAGTAGGTTGAAGATTGCAGAT-TCTGTCACCTTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCT-TATCACCCTAAGCAGT
* * *
37108055 AGTGGAGCAGATCGAAGA-TGCGAAATCTTATC
1 AGTGGAGTAGATTGAAGATTGC-AGATCTTATC
37108087 TTCCCAAGGT
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
43 4 0.06
44 57 0.92
45 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATTGCAGATCTTATCACCCTAAGCAGT
Found at i:37108408 original size:25 final size:25
Alignment explanation
Indices: 37108375--37108424 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
37108365 CCCGGGCCCA
*
37108375 AACCTAAAACAAATTAAACCCAAAC
1 AACCCAAAACAAATTAAACCCAAAC
*
37108400 AACCCAAAACAAATTACACCCAAAC
1 AACCCAAAACAAATTAAACCCAAAC
37108425 CTCAACCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.58, C:0.32, G:0.00, T:0.10
Consensus pattern (25 bp):
AACCCAAAACAAATTAAACCCAAAC
Found at i:37109584 original size:3 final size:3
Alignment explanation
Indices: 37109570--37109617 Score: 69
Period size: 3 Copynumber: 15.7 Consensus size: 3
37109560 ACAAATTTCA
* *
37109570 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
37109616 TA
1 TA
37109618 GTTTTATTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:37123572 original size:37 final size:36
Alignment explanation
Indices: 37123526--37123595 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
37123516 CACTTTAATG
*
37123526 TTAAATTAATA-AAATACTATTAAGATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
37123563 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATAAAACTATTAAAATAATATTA
37123596 TTTTGGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:37130897 original size:17 final size:17
Alignment explanation
Indices: 37130856--37130889 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37130846 TTGTCTCATA
*
37130856 AAAGAGTATACCAAACC
1 AAAGAGTTTACCAAACC
*
37130873 AAACAGTTTACCAAACC
1 AAAGAGTTTACCAAACC
37130890 TTAGAGTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.26, G:0.09, T:0.15
Consensus pattern (17 bp):
AAAGAGTTTACCAAACC
Found at i:37135359 original size:53 final size:53
Alignment explanation
Indices: 37135202--37135360 Score: 203
Period size: 53 Copynumber: 3.0 Consensus size: 53
37135192 TTAATTTTTC
* * *
37135202 CCATATGATGCCATAACCCACCAGTTATGATCTTACACGATATGGTCTTATTT
1 CCATATGATGACATAAACCACCAGTTATGATCTTACACGATATGGTCTTCTTT
* * * *
37135255 CCATATGATGACATAAACCACTAGTTATGGTCTTACACGATTTGGTTTTCTTT
1 CCATATGATGACATAAACCACCAGTTATGATCTTACACGATATGGTCTTCTTT
* * * *
37135308 CCATATGGT-ATCATAATCCACCAGTTACGATCTTACATGATATGGTCTTCTTT
1 CCATATGATGA-CATAAACCACCAGTTATGATCTTACACGATATGGTCTTCTTT
37135361 AGTGCCATGG
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.01
53 89 0.99
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (53 bp):
CCATATGATGACATAAACCACCAGTTATGATCTTACACGATATGGTCTTCTTT
Found at i:37136980 original size:39 final size:40
Alignment explanation
Indices: 37136936--37137118 Score: 180
Period size: 39 Copynumber: 4.6 Consensus size: 40
37136926 GCTACTCGTT
*
37136936 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
37136976 -AAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
37137015 CAAATGCCTTCGAG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
37137054 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
37137095 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
37137119 ACATCATTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
38 1 0.01
39 62 0.53
40 41 0.35
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37141615 original size:4 final size:4
Alignment explanation
Indices: 37141606--37141632 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
37141596 TAGCTTGATG
37141606 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
37141633 TAATTTGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:37143550 original size:11 final size:11
Alignment explanation
Indices: 37143534--37143575 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
37143524 TGGGTGAAAT
37143534 TATTTTAATAA
1 TATTTTAATAA
*
37143545 TATTTTATTAAGA
1 TATTTTAAT-A-A
37143558 TATTTTAATAA
1 TATTTTAATAA
37143569 TATTTTA
1 TATTTTA
37143576 TTTATTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.59
12 2 0.07
13 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (11 bp):
TATTTTAATAA
Found at i:37148221 original size:19 final size:18
Alignment explanation
Indices: 37148175--37148213 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37148165 GAGTTAAATG
* *
37148175 GTTCACATAAAATAGATA
1 GTTCGCATAAAATAGACA
37148193 GTTCGCATAAAATA-ACA
1 GTTCGCATAAAATAGACA
37148210 GTTC
1 GTTC
37148214 ATGCATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (18 bp):
GTTCGCATAAAATAGACA
Found at i:37148348 original size:23 final size:23
Alignment explanation
Indices: 37148322--37148381 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
37148312 AACATATAGG
*
37148322 GGACTCTATCGCCACCTATAAGT
1 GGACTCTATCACCACCTATAAGT
37148345 GGACTCTATCACCACCTATAAGT
1 GGACTCTATCACCACCTATAAGT
37148368 GGACTCTATCACCA
1 GGACTCTATCACCA
37148382 TACATTGGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (23 bp):
GGACTCTATCACCACCTATAAGT
Found at i:37152027 original size:46 final size:46
Alignment explanation
Indices: 37151977--37152064 Score: 176
Period size: 46 Copynumber: 1.9 Consensus size: 46
37151967 AATAGTTGCA
37151977 TAGGAATCAAATTGCTAAAAGATAATATCTAATAATAATATCTTAT
1 TAGGAATCAAATTGCTAAAAGATAATATCTAATAATAATATCTTAT
37152023 TAGGAATCAAATTGCTAAAAGATAATATCTAATAATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCTAATAATAATATC
37152065 CTAAATTCTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (46 bp):
TAGGAATCAAATTGCTAAAAGATAATATCTAATAATAATATCTTAT
Found at i:37156776 original size:16 final size:16
Alignment explanation
Indices: 37156755--37156817 Score: 83
Period size: 16 Copynumber: 3.9 Consensus size: 16
37156745 GCAACAACTC
*
37156755 TTGTTTAGAATAGTTG
1 TTGTTTAGAATAATTG
37156771 TTGTTTAGAATAATTG
1 TTGTTTAGAATAATTG
*
37156787 TTGTTTGAGAATAACT-
1 TTGTTT-AGAATAATTG
*
37156803 ATGTTTAGAATAATT
1 TTGTTTAGAATAATT
37156818 ATGTTCAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
15 8 0.19
16 26 0.62
17 8 0.19
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.48
Consensus pattern (16 bp):
TTGTTTAGAATAATTG
Found at i:37156892 original size:16 final size:16
Alignment explanation
Indices: 37156871--37156925 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
37156861 TAGTTGTTAT
37156871 TTGAGAACAACTCTTG
1 TTGAGAACAACTCTTG
**
37156887 TTGAGAACAACTAATG
1 TTGAGAACAACTCTTG
* *
37156903 TTTAAAACAACTCTTG
1 TTGAGAACAACTCTTG
*
37156919 TTTAGAA
1 TTGAGAA
37156926 TAATGTCATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (16 bp):
TTGAGAACAACTCTTG
Found at i:37159140 original size:25 final size:26
Alignment explanation
Indices: 37159084--37159141 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 26
37159074 AAAAAATGTT
*
37159084 TTTTTTAATTATTATAAAAATACAAT
1 TTTTTTAATTATTATAAAAATACAAA
*
37159110 TATTTTTAATT-TT-TAAAAATATAACA
1 T-TTTTTAATTATTATAAAAATACAA-A
37159136 TTTTTT
1 TTTTTT
37159142 GTAATTCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 15 0.54
26 4 0.14
27 9 0.32
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTTTAATTATTATAAAAATACAAA
Found at i:37159146 original size:27 final size:25
Alignment explanation
Indices: 37159083--37159152 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 25
37159073 AAAAAAATGT
37159083 TTTTTTTAATTATTATAAAAATACAA
1 TTTTTTTAATTATTA-AAAAATACAA
*
37159109 TTATTTTTAATTTTTAAAAATATA-ACA
1 TT-TTTTTAATTATTAAAAA-ATACA-A
*
37159136 TTTTTTGTAATTCTTAA
1 TTTTTT-TAATTATTAA
37159153 TTTTTTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 11 0.29
27 27 0.71
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.54
Consensus pattern (25 bp):
TTTTTTTAATTATTAAAAAATACAA
Found at i:37159169 original size:10 final size:10
Alignment explanation
Indices: 37159154--37159187 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
37159144 AATTCTTAAT
37159154 TTTTTTAAAA
1 TTTTTTAAAA
*
37159164 TTTTTTATAA
1 TTTTTTAAAA
37159174 TTTTTTGAAAA
1 TTTTTT-AAAA
37159185 TTT
1 TTT
37159188 ATAAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:37162573 original size:13 final size:13
Alignment explanation
Indices: 37162555--37162600 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
37162545 AGTTTTTTAT
37162555 TGCTTTTGAGAAA
1 TGCTTTTGAGAAA
*
37162568 TGCTTTTCAGAAA
1 TGCTTTTGAGAAA
*
37162581 TGCTTTTGAGAAG
1 TGCTTTTGAGAAA
37162594 TGCTTTT
1 TGCTTTT
37162601 AAAAAATTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (13 bp):
TGCTTTTGAGAAA
Found at i:37162607 original size:26 final size:26
Alignment explanation
Indices: 37162555--37162607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
37162545 AGTTTTTTAT
* *
37162555 TGCTTTTGAGAAATGCTTTTCAGAAA
1 TGCTTTTGAGAAATGCTTTTAAAAAA
*
37162581 TGCTTTTGAGAAGTGCTTTTAAAAAA
1 TGCTTTTGAGAAATGCTTTTAAAAAA
37162607 T
1 T
37162608 TTGAGTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
TGCTTTTGAGAAATGCTTTTAAAAAA
Found at i:37162872 original size:8 final size:8
Alignment explanation
Indices: 37162859--37162886 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
37162849 TATATAAACT
37162859 ATATTTAA
1 ATATTTAA
37162867 ATATTTAA
1 ATATTTAA
37162875 ATATTTAA
1 ATATTTAA
37162883 ATAT
1 ATAT
37162887 AAAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:37162892 original size:16 final size:16
Alignment explanation
Indices: 37162859--37162892 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37162849 TATATAAACT
**
37162859 ATATTTAAATATTTAA
1 ATATTTAAATATAAAA
37162875 ATATTTAAATATAAAA
1 ATATTTAAATATAAAA
37162891 AT
1 AT
37162893 TAAATATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATATTTAAATATAAAA
Found at i:37163226 original size:22 final size:21
Alignment explanation
Indices: 37163201--37163244 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
37163191 AAGCATATGA
*
37163201 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
37163223 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
37163244 A
1 A
37163245 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:37163516 original size:64 final size:64
Alignment explanation
Indices: 37163415--37163545 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
37163405 GCAATATGCC
*
37163415 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTGTTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTATTTTAAGATGAACAAGAATGGAACT
37163479 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTATTTTAAGATGAACAAGAATGGAACT
1 AAATTAGTGGACAGTCCACATCATTAACATTGCATACTATTTTAAGATGAACAAGAATGGAACT
37163543 AAA
1 AAA
37163546 GTGTCTACCG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (64 bp):
AAATTAGTGGACAGTCCACATCATTAACATTGCATACTATTTTAAGATGAACAAGAATGGAACT
Found at i:37167154 original size:37 final size:36
Alignment explanation
Indices: 37167086--37167203 Score: 144
Period size: 37 Copynumber: 3.5 Consensus size: 36
37167076 AACTATAAAG
*
37167086 GCCGAATGC--ACATAT-TCACTTATACCCACCTAT
1 GCCGAATGCATACATATATCACTTATATCCACCTAT
*
37167119 GCCGAATGCATACATATATACACTTATATCTACCTAT
1 GCCGAATGCATACATATAT-CACTTATATCCACCTAT
37167156 GCCGAATGCATACA-A-AT-A--TATATCCACCTAT
1 GCCGAATGCATACATATATCACTTATATCCACCTAT
*
37167187 GCCGAATGCCTACATAT
1 GCCGAATGCATACATAT
37167204 GCACACATAA
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
31 25 0.33
32 1 0.01
33 10 0.13
35 8 0.11
36 2 0.03
37 29 0.39
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (36 bp):
GCCGAATGCATACATATATCACTTATATCCACCTAT
Found at i:37167563 original size:41 final size:41
Alignment explanation
Indices: 37167388--37167556 Score: 266
Period size: 41 Copynumber: 4.1 Consensus size: 41
37167378 AATTCATCAT
* *
37167388 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
37167429 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* * *
37167470 ATTCATATCACCGGCACTTAGCTTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
37167511 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
37167552 ATTCA
1 ATTCA
37167557 ATTCACCAAT
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 115 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:37167563 original size:82 final size:82
Alignment explanation
Indices: 37167394--37167556 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
37167384 TCATATTCGG
37167394 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
37167459 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
* *
37167476 ATCACCGGCACTTAGCTTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
37167541 TTTATAACCTGATTCA
66 TTTATAACCTGATTCA
37167557 ATTCACCAAT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:37167820 original size:15 final size:17
Alignment explanation
Indices: 37167782--37167822 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
37167772 ATCCACATAT
37167782 ATATATATATTACACAC
1 ATATATATATTACACAC
*
37167799 ATATATATATT-CGCAC
1 ATATATATATTACACAC
37167815 AT-TATATA
1 ATATATATA
37167823 AACACAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.26
16 6 0.26
17 11 0.48
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (17 bp):
ATATATATATTACACAC
Found at i:37167821 original size:19 final size:18
Alignment explanation
Indices: 37167775--37167822 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
37167765 TTGTTCGATC
37167775 CACATATATATATATATTA
1 CACAT-TATATATATATTA
* *
37167794 CACA-CATATATATATTCG
1 CACATTATATATATATT-A
37167812 CACATTATATA
1 CACATTATATA
37167823 AACACAACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.46
18 4 0.17
19 9 0.38
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.38
Consensus pattern (18 bp):
CACATTATATATATATTA
Found at i:37179183 original size:20 final size:20
Alignment explanation
Indices: 37179158--37179197 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37179148 TTGGGTACAC
37179158 TTTATGATTATTT-GTAATCT
1 TTTATGATT-TTTAGTAATCT
*
37179178 TTTATGGTTTTTAGTAATCT
1 TTTATGATTTTTAGTAATCT
37179198 CTCATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (20 bp):
TTTATGATTTTTAGTAATCT
Found at i:37179459 original size:20 final size:20
Alignment explanation
Indices: 37179406--37179511 Score: 63
Period size: 20 Copynumber: 5.2 Consensus size: 20
37179396 CCTCACATTG
*
37179406 TTTTGGTACTCACCTTATAAT
1 TTTTGGTACTC-TCTTATAAT
** * *
37179427 TTTTTATATTCTCTTATACT
1 TTTTGGTACTCTCTTATAAT
* **
37179447 TTTTGGTACTCTCTCATGTTT
1 TTTTGGTACTCTCTTAT-AAT
* *
37179468 TTTTAGTACT-TCATCATAAT
1 TTTTGGTACTCTC-TTATAAT
*
37179488 TTTTGGTA-TCCTCTCATAAT
1 TTTTGGTACT-CTCTTATAAT
37179508 TTTT
1 TTTT
37179512 TGCACTATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
19 1 0.02
20 41 0.62
21 24 0.36
ACGTcount: A:0.20, C:0.17, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTTGGTACTCTCTTATAAT
Found at i:37179511 original size:41 final size:39
Alignment explanation
Indices: 37179406--37179512 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 39
37179396 CCTCACATTG
* * *
37179406 TTTTGGTACTCACCTTATAATTTTTTATATTCTCTTATACT
1 TTTTGGTACTC-TCTCATAATTTTTTATATTCTC-TATAAT
**
37179447 TTTTGGTACTCTCTCATGTTTTTTTAGTACTTCATC-ATAAT
1 TTTTGGTACTCTCTCATAATTTTTTA-TA-TTC-TCTATAAT
37179488 TTTTGGTA-TCCTCTCATAATTTTTT
1 TTTTGGTACT-CTCTCATAATTTTTT
37179513 GCACTATTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
40 12 0.22
41 38 0.69
42 3 0.05
43 2 0.04
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.56
Consensus pattern (39 bp):
TTTTGGTACTCTCTCATAATTTTTTATATTCTCTATAAT
Found at i:37179513 original size:21 final size:20
Alignment explanation
Indices: 37179446--37179513 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
37179436 TCTCTTATAC
**
37179446 TTTTTGGTACTCTCTCATGTT
1 TTTTTGGTAC-CTCTCATAAT
* *
37179467 TTTTTAGTACTTCATCATAA-
1 TTTTTGGTACCTC-TCATAAT
37179487 TTTTTGGTATCCTCTCATAAT
1 TTTTTGGTA-CCTCTCATAAT
37179508 TTTTTG
1 TTTTTG
37179514 CACTATTTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.42
21 22 0.58
ACGTcount: A:0.18, C:0.16, G:0.10, T:0.56
Consensus pattern (20 bp):
TTTTTGGTACCTCTCATAAT
Found at i:37179773 original size:20 final size:20
Alignment explanation
Indices: 37179748--37179788 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
37179738 ATATTGGAGG
37179748 TCCCTCAT-ATTTTTTGATAA
1 TCCCTCATAATTTTTT-ATAA
37179768 TCCCTCATAATTTTTTATAA
1 TCCCTCATAATTTTTTATAA
37179788 T
1 T
37179789 ATCGTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.27, C:0.20, G:0.02, T:0.51
Consensus pattern (20 bp):
TCCCTCATAATTTTTTATAA
Found at i:37179967 original size:21 final size:20
Alignment explanation
Indices: 37179942--37179992 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
37179932 TCTTTAATGA
*
37179942 AATATTTTATTATTCAAAAAT
1 AATATTTT-TTACTCAAAAAT
*
37179963 AATATATTTTTACTCCAAAAT
1 AATAT-TTTTTACTCAAAAAT
*
37179984 TATATTTTT
1 AATATTTTT
37179993 AGTTTCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 4 0.15
21 19 0.73
22 3 0.12
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (20 bp):
AATATTTTTTACTCAAAAAT
Found at i:37180394 original size:20 final size:20
Alignment explanation
Indices: 37180365--37180554 Score: 71
Period size: 20 Copynumber: 9.5 Consensus size: 20
37180355 AAGGTATACT
37180365 AAAATATATGAGGAAGTACAA
1 AAAAT-TATGAGGAAGTACAA
37180386 AAAATTATGAGGGAA-TA-AA
1 AAAATTATGA-GGAAGTACAA
37180405 AAAA--ATGAGGAAGTACTAA
1 AAAATTATGAGGAAGTAC-AA
* * *
37180424 ATATTCTATGA--AAATAACAA
1 AAAAT-TATGAGGAAGT-ACAA
** *
37180444 AAAATTACAAGGGAA-TACCA
1 AAAATTATGA-GGAAGTACAA
* *
37180464 AAAATTACGAGGAAATACCAA
1 AAAATTATGAGGAAGTA-CAA
* *
37180485 AAAA--ACTCGAAGAAGTACCA
1 AAAATTA-T-GAGGAAGTACAA
*
37180505 AAAATTTTGAGAGAA-TACTAA
1 AAAATTATGAG-GAAGTAC-AA
*
37180526 AAAA-TAT-ACGAAAGTACAA
1 AAAATTATGA-GGAAGTACAA
*
37180545 AAAACTATGA
1 AAAATTATGA
37180555 AATGATTACA
Statistics
Matches: 127, Mismatches: 19, Indels: 46
0.66 0.10 0.24
Matches are distributed among these distances:
16 4 0.03
17 6 0.05
19 27 0.21
20 49 0.39
21 35 0.28
22 6 0.05
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.19
Consensus pattern (20 bp):
AAAATTATGAGGAAGTACAA
Found at i:37180882 original size:40 final size:40
Alignment explanation
Indices: 37180837--37180927 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
37180827 TACCAAGAAT
* * *
37180837 TATGAGGAAGTACCGAAAAA-TACAAGAAAGTATAAAAAAA
1 TATGAGGAAATACC-AAAAATTACAAGAAAATACAAAAAAA
* *
37180877 TATGAGGAAATACCAAAAATTATAAGAAAATACCAAAAAA
1 TATGAGGAAATACCAAAAATTACAAGAAAATACAAAAAAA
*
37180917 TCTGAGGAAAT
1 TATGAGGAAAT
37180928 GCAGAGAGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 5 0.11
40 39 0.89
ACGTcount: A:0.58, C:0.09, G:0.15, T:0.18
Consensus pattern (40 bp):
TATGAGGAAATACCAAAAATTACAAGAAAATACAAAAAAA
Found at i:37180894 original size:20 final size:20
Alignment explanation
Indices: 37180825--37180927 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
37180815 TTTTTGAAAC
* *
37180825 AATACCAAGAATTATGAGGA
1 AATACCAAAAAATATGAGGA
* * * *
37180845 AGTACCGAAAAATA-CAAGA
1 AATACCAAAAAATATGAGGA
**
37180864 AAGTATAAAAAAATATGAGGA
1 AA-TACCAAAAAATATGAGGA
* * *
37180885 AATACCAAAAATTATAAGAA
1 AATACCAAAAAATATGAGGA
*
37180905 AATACCAAAAAATCTGAGGA
1 AATACCAAAAAATATGAGGA
37180925 AAT
1 AAT
37180928 GCAGAGAGAG
Statistics
Matches: 60, Mismatches: 21, Indels: 4
0.71 0.25 0.05
Matches are distributed among these distances:
19 4 0.07
20 51 0.85
21 5 0.08
ACGTcount: A:0.58, C:0.10, G:0.15, T:0.17
Consensus pattern (20 bp):
AATACCAAAAAATATGAGGA
Found at i:37181010 original size:21 final size:21
Alignment explanation
Indices: 37180959--37181058 Score: 84
Period size: 20 Copynumber: 4.9 Consensus size: 21
37180949 AAACCTATGA
*
37180959 AAGTACCAAAAAAA-ATGAGG
1 AAGTATCAAAAAAATATGAGG
* *
37180979 ATGT-TCTAAAAAATATGAGG
1 AAGTATCAAAAAAATATGAGG
* *
37180999 AAGTGTC-AAAAATTATGAAGG
1 AAGTATCAAAAAAATATG-AGG
* *
37181020 AA-TACCAAAAAAATATGATG
1 AAGTATCAAAAAAATATGAGG
37181040 AAGTAT-AAAAAAATTATGA
1 AAGTATCAAAAAAA-TATGA
37181059 AAAAAATACC
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
19 7 0.11
20 34 0.53
21 23 0.36
ACGTcount: A:0.55, C:0.06, G:0.17, T:0.22
Consensus pattern (21 bp):
AAGTATCAAAAAAATATGAGG
Found at i:37183311 original size:26 final size:26
Alignment explanation
Indices: 37183260--37183320 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
37183250 TCCCGCTTTC
*
37183260 AATTCATTTTTTGTAAATTATTTATT
1 AATTCATTTTTTGTAAATTATATATT
37183286 AATTCATTTATTT-TAAACTT-TATATT
1 AATTCATTT-TTTGTAAA-TTATATATT
*
37183312 ACTT-ATTTT
1 AATTCATTTT
37183321 AAATTGTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 1 0.03
25 4 0.13
26 21 0.68
27 5 0.16
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (26 bp):
AATTCATTTTTTGTAAATTATATATT
Found at i:37183318 original size:21 final size:21
Alignment explanation
Indices: 37183293--37183340 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
37183283 ATTAATTCAT
37183293 TTATTTTAAACT-TTATATTA
1 TTATTTTAAACTGTTATATTA
* *
37183313 CTTATTTTAAATTGTTCTATTA
1 -TTATTTTAAACTGTTATATTA
37183335 TTATTT
1 TTATTT
37183341 ATTTAAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (21 bp):
TTATTTTAAACTGTTATATTA
Found at i:37183360 original size:24 final size:24
Alignment explanation
Indices: 37183291--37183372 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
37183281 TTATTAATTC
37183291 ATTTATTTTAAA--CTT-TATATT
1 ATTTATTTTAAATTCTTCTATATT
* *
37183312 ACTTATTTTAAATTGTTCTATTATT
1 ATTTATTTTAAATTCTTCTA-TATT
*
37183337 ATTTA-TTTAAGTTCTTCATATATT
1 ATTTATTTTAAATTCTTC-TATATT
**
37183361 ATGCATTTTAAA
1 ATTTATTTTAAA
37183373 CAATATTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
21 11 0.23
23 2 0.04
24 19 0.40
25 15 0.32
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (24 bp):
ATTTATTTTAAATTCTTCTATATT
Found at i:37185452 original size:38 final size:38
Alignment explanation
Indices: 37185401--37185485 Score: 134
Period size: 38 Copynumber: 2.2 Consensus size: 38
37185391 TGTAATAGAA
*
37185401 CAATTCAACACTAGCAGTCAGCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTCAACATGCTTAACATGTATT
* * *
37185439 CAATTCAATACTAGCTGTTAACATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTCAACATGCTTAACATGTATT
37185477 CAATTCAAC
1 CAATTCAAC
37185486 GCTATGCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (38 bp):
CAATTCAACACTAGCAGTCAACATGCTTAACATGTATT
Found at i:37187121 original size:15 final size:16
Alignment explanation
Indices: 37187078--37187129 Score: 72
Period size: 15 Copynumber: 3.3 Consensus size: 16
37187068 TCCTATAATG
37187078 TCACAA-TCTATAGTTT
1 TCACAAGTCTATAG-TT
*
37187094 TCACAATTCTATAGTT
1 TCACAAGTCTATAGTT
37187110 TCA-AAGTCTATAGTT
1 TCACAAGTCTATAGTT
37187125 TCACA
1 TCACA
37187130 TATAAACAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 14 0.42
16 12 0.36
17 7 0.21
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (16 bp):
TCACAAGTCTATAGTT
Found at i:37190928 original size:8 final size:8
Alignment explanation
Indices: 37190917--37190955 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
37190907 AATTGGGAAA
37190917 GAAAAAAG
1 GAAAAAAG
37190925 GAAAAAAG
1 GAAAAAAG
*
37190933 GAAAAAGGG
1 GAAAAA-AG
37190942 GAAAAAAAG
1 G-AAAAAAG
37190951 GAAAA
1 GAAAA
37190956 CGAAAGACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 18 0.67
9 4 0.15
10 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (8 bp):
GAAAAAAG
Found at i:37190935 original size:20 final size:20
Alignment explanation
Indices: 37190898--37190936 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37190888 AAGAATAAAA
***
37190898 AAAAAAGGAAATTGGGAAAG
1 AAAAAAGGAAAAAAGGAAAG
37190918 AAAAAAGGAAAAAAGGAAA
1 AAAAAAGGAAAAAAGGAAA
37190937 AAGGGGAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (20 bp):
AAAAAAGGAAAAAAGGAAAG
Found at i:37190938 original size:9 final size:9
Alignment explanation
Indices: 37190918--37190955 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
37190908 ATTGGGAAAG
37190918 AAAAAAGG-
1 AAAAAAGGA
37190926 AAAAAAGGA
1 AAAAAAGGA
**
37190935 AAAAGGGGA
1 AAAAAAGGA
37190944 AAAAAAGGA
1 AAAAAAGGA
37190953 AAA
1 AAA
37190956 CGAAAGACGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (9 bp):
AAAAAAGGA
Found at i:37190989 original size:3 final size:3
Alignment explanation
Indices: 37190983--37191016 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
37190973 GACGACGACG
37190983 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
37191017 TATGGGAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:37206398 original size:20 final size:20
Alignment explanation
Indices: 37206373--37206411 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37206363 TGAGTTATTT
37206373 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
37206393 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
37206412 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:37213353 original size:31 final size:31
Alignment explanation
Indices: 37213318--37213493 Score: 246
Period size: 31 Copynumber: 5.7 Consensus size: 31
37213308 GCATATGTTT
*
37213318 TATACATTGTCAAATTTGATTTGTATATAGA
1 TATACATTGTCGAATTTGATTTGTATATAGA
* *
37213349 TATACATTGTCGAATTTGATTTGTATATGGC
1 TATACATTGTCGAATTTGATTTGTATATAGA
* * *
37213380 TATATATTGTTGAATTTGATTTGTATATGGA
1 TATACATTGTCGAATTTGATTTGTATATAGA
*
37213411 TATTCATTGTCGAATTTGATTTGTATATAGA
1 TATACATTGTCGAATTTGATTTGTATATAGA
*
37213442 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGTCGAATTTGATTTGTATATAGA
* **
37213473 TATATATTACCGAA-TTGATTT
1 TATACATTGTCGAATTTGATTT
37213494 AAGCATTGGA
Statistics
Matches: 131, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
30 7 0.05
31 124 0.95
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.47
Consensus pattern (31 bp):
TATACATTGTCGAATTTGATTTGTATATAGA
Found at i:37213488 original size:93 final size:92
Alignment explanation
Indices: 37213322--37213493 Score: 272
Period size: 93 Copynumber: 1.9 Consensus size: 92
37213312 ATGTTTTATA
* * *
37213322 CATTGTCAAATTTGATTTGTATATAGATATACATTGTCGAATTTGATTTGTATATGGCTATATAT
1 CATTGTCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATATAT
***
37213387 TGTTGAATTTGATTTGTATATGGATATT
66 TACCGAA-TTGATTTGTATATGGATATT
*
37213415 CATTGTCGAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATATAT
1 CATTGTCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATATAT
37213480 TACCGAATTGATTT
66 TACCGAATTGATTT
37213494 AAGCATTGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 7 0.10
93 65 0.90
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (92 bp):
CATTGTCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGATATATAT
TACCGAATTGATTTGTATATGGATATT
Found at i:37213941 original size:16 final size:16
Alignment explanation
Indices: 37213920--37213952 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37213910 TTATATGAGT
37213920 TAGTTAAATGTTTATG
1 TAGTTAAATGTTTATG
37213936 TAGTTAAATGTTTATG
1 TAGTTAAATGTTTATG
37213952 T
1 T
37213953 GTTTGAGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (16 bp):
TAGTTAAATGTTTATG
Found at i:37214800 original size:19 final size:18
Alignment explanation
Indices: 37214767--37214814 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
37214757 TGTTACACGT
*
37214767 AAAGTGCATACTGGCGCAC
1 AAAGTGCAT-CTGGCACAC
*
37214786 AAAGTGCATCTTGGCACAT
1 AAAGTGCATC-TGGCACAC
*
37214805 GAAGTGCATC
1 AAAGTGCATC
37214815 CTAGCACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 1 0.04
19 24 0.96
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (18 bp):
AAAGTGCATCTGGCACAC
Found at i:37214821 original size:19 final size:19
Alignment explanation
Indices: 37214787--37214823 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37214777 CTGGCGCACA
* *
37214787 AAGTGCATCTTGGCACATG
1 AAGTGCATCCTAGCACATG
37214806 AAGTGCATCCTAGCACAT
1 AAGTGCATCCTAGCACAT
37214824 AAGGGCATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (19 bp):
AAGTGCATCCTAGCACATG
Found at i:37215320 original size:11 final size:11
Alignment explanation
Indices: 37215304--37215337 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
37215294 ATTTAATGGA
37215304 AAAATTAATTT
1 AAAATTAATTT
37215315 AAAATTAATTT
1 AAAATTAATTT
*
37215326 AATAAATAATTT
1 AA-AATTAATTT
37215338 TCATTTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AAAATTAATTT
Found at i:37223809 original size:42 final size:42
Alignment explanation
Indices: 37223750--37223834 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
37223740 ATCTGCATCA
37223750 GCTCTAAATTTGTAATTGATAATAATTTCAAAATCCAAATTC
1 GCTCTAAATTTGTAATTGATAATAATTTCAAAATCCAAATTC
* *
37223792 GCTCTAAATTTGTAATTGATAGTAATTTCGAAATCCAAATTC
1 GCTCTAAATTTGTAATTGATAATAATTTCAAAATCCAAATTC
37223834 G
1 G
37223835 AATAATACTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (42 bp):
GCTCTAAATTTGTAATTGATAATAATTTCAAAATCCAAATTC
Found at i:37233177 original size:25 final size:24
Alignment explanation
Indices: 37233141--37233206 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
37233131 GGCCTGGCCC
* *
37233141 ATTTTTTGATTAAAATTAAAATTA
1 ATTTTTTTATTAAAATTAAAACTA
37233165 TATTTTTTTATTAAAATTAAAACTA
1 -ATTTTTTTATTAAAATTAAAACTA
*
37233190 A--TTGTTATTAAAATTAA
1 ATTTTTTTATTAAAATTAA
37233207 TTGTTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.39
24 1 0.03
25 22 0.58
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (24 bp):
ATTTTTTTATTAAAATTAAAACTA
Found at i:37233200 original size:22 final size:24
Alignment explanation
Indices: 37233149--37233206 Score: 75
Period size: 22 Copynumber: 2.5 Consensus size: 24
37233139 CCATTTTTTG
* *
37233149 ATTAAAATTAAAATTATATTTTTTT
1 ATTAAAATTAAAACTATA-TTTGTT
37233174 ATTAAAATTAAAACTA-A-TTGTT
1 ATTAAAATTAAAACTATATTTGTT
37233196 ATTAAAATTAA
1 ATTAAAATTAA
37233207 TTGTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 15 0.48
24 1 0.03
25 15 0.48
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
ATTAAAATTAAAACTATATTTGTT
Found at i:37233219 original size:16 final size:16
Alignment explanation
Indices: 37233180--37233221 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
37233170 TTTTATTAAA
*
37233180 ATTAAAACTAATTGTT
1 ATTAAAATTAATTGTT
37233196 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
37233212 ATTAAAATTA
1 ATTAAAATTA
37233222 TATCAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:37235366 original size:47 final size:47
Alignment explanation
Indices: 37235288--37235879 Score: 1033
Period size: 47 Copynumber: 12.6 Consensus size: 47
37235278 CCCTTCGGGA
* * * * ** *
37235288 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCGCTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37235335 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235429 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235476 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235523 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235570 CTTATC-CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235616 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235712 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235759 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37235806 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37235853 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
37235880 TATTCAAATA
Statistics
Matches: 523, Mismatches: 19, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
46 45 0.09
47 431 0.82
49 47 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37241275 original size:23 final size:23
Alignment explanation
Indices: 37241242--37241293 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
37241232 ACATTTTCTT
*
37241242 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
37241265 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
37241288 CACTGA
1 CACTGA
37241294 TCAATAACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:37251188 original size:40 final size:40
Alignment explanation
Indices: 37251105--37251367 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
37251095 TTGAATGCTG
* * * * * *
37251105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37251145 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37251185 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
37251225 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
37251265 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37251305 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37251344 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37251368 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37263071 original size:40 final size:40
Alignment explanation
Indices: 37262988--37263250 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
37262978 TTGAATGCTG
* * * * * *
37262988 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
37263028 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
37263068 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
37263108 TCCGGGTTAAGCCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
37263148 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37263188 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
37263227 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37263251 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:37263270 original size:79 final size:80
Alignment explanation
Indices: 37263027--37263285 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
37263017 AAGTGAATAT
* * * * * *
37263027 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
37263091 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * * * *
37263107 ATCCGGGTTAAGCCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
37263172 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
37263187 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
37263251 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
37263266 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
37263286 TACGTGATTT
Statistics
Matches: 152, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 91 0.60
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:37267478 original size:39 final size:40
Alignment explanation
Indices: 37267374--37267558 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
37267364 TTGAATGATG
* * * *
37267374 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37267414 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37267454 TCTGGGCTAAG-CCCGAAGGGATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37267493 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37267534 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37267559 AACGAGCAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37267540 original size:79 final size:81
Alignment explanation
Indices: 37267375--37267558 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 81
37267365 TGAATGATGT
* * *
37267375 CCGGGCTAAGTCCCGAA-GGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
37267439 GTGCGAGATACTAATT
66 GTGCGAGATACTAATA
* * * * **
37267455 CTGGGCTAAG-CCCGAAGGGATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGGATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
37267517 TGTGCGAGTTACT-ATAA
65 TGTGCGAGATACTAAT-A
* *
37267534 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGGATTTG
37267559 AACGAGCAGC
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.60
80 31 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAATA
Found at i:37267580 original size:79 final size:79
Alignment explanation
Indices: 37267427--37267591 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
37267417 GGACTAAGAT
* * * * ** *
37267427 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGGATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTCACTAA
*
37267492 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37267506 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-CAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTCA-C
* *
37267569 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37267585 CCGAAGG
1 CCGAAGG
37267592 TACGTGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.63
80 24 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTCACTAA
ATCCGGGTTAAATC
Found at i:37269460 original size:21 final size:20
Alignment explanation
Indices: 37269421--37269460 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37269411 TTGGACAACA
*
37269421 CTATCTTGGTACTCGATGAG
1 CTATCTTGGTACCCGATGAG
*
37269441 CTATCTTGTTCACCCGATGA
1 CTATCTTGGT-ACCCGATGA
37269461 ATGCTTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (20 bp):
CTATCTTGGTACCCGATGAG
Found at i:37275457 original size:40 final size:40
Alignment explanation
Indices: 37275373--37275597 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
37275363 TTGAATGATG
* * * * *
37275373 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37275413 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37275453 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37275492 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37275532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37275573 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37275598 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37275516 original size:79 final size:80
Alignment explanation
Indices: 37275373--37275597 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
37275363 TTGAATGATG
* * * * * *
37275373 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCA
*
37275435 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
*
37275453 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
37275516 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * *
37275532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
37275597 G
66 G
37275598 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 3 0.02
79 61 0.49
80 57 0.46
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37275619 original size:119 final size:119
Alignment explanation
Indices: 37275380--37275630 Score: 287
Period size: 119 Copynumber: 2.1 Consensus size: 119
37275370 ATGTCCGAGC
*
37275380 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * *
37275445 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCCGGGT
* * * **
37275499 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * * *
37275562 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAATCCGGGT
* *
37275618 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
37275631 TACGTGATTT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.69
120 32 0.29
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATCCGGGT
Found at i:37278317 original size:119 final size:120
Alignment explanation
Indices: 37278135--37278357 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
37278125 TCCTCGTTCA
* *
37278135 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGAT
* *
37278200 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
37278255 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCCGG
* * *
37278317 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
37278358 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 6 0.07
119 63 0.71
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:37278357 original size:40 final size:40
Alignment explanation
Indices: 37278133--37278357 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
37278123 GCTCCTCGTT
* *
37278133 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37278173 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37278213 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37278253 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37278292 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37278333 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37278358 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37280009 original size:27 final size:27
Alignment explanation
Indices: 37279979--37280156 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
37279969 ATATCGAGTC
* *
37279979 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
37280006 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37280033 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
37280061 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37280088 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
37280115 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
37280142 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37280157 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37280118 original size:82 final size:81
Alignment explanation
Indices: 37280000--37280155 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37279990 TGCTATATAA
* *
37280000 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
37280065 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
37280082 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
37280146 CACTTAGTGC
65 CACTTAGTGC
37280156 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37289585 original size:14 final size:14
Alignment explanation
Indices: 37289566--37289595 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37289556 CCTCATTCTT
37289566 ATGCCGCCCCTTGC
1 ATGCCGCCCCTTGC
37289580 ATGCCGCCCCTTGC
1 ATGCCGCCCCTTGC
37289594 AT
1 AT
37289596 CCCAAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.47, G:0.20, T:0.23
Consensus pattern (14 bp):
ATGCCGCCCCTTGC
Found at i:37302092 original size:21 final size:22
Alignment explanation
Indices: 37302063--37302113 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
37302053 TCTCTCTCGC
*
37302063 TTTCCTTTTCGCCTTTTTCA-T
1 TTTCATTTTCGCCTTTTTCACT
**
37302084 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCGCCTTTTTCACT
37302106 TTT-ATTTT
1 TTTCATTTT
37302114 TCTCGTCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCGCCTTTTTCACT
Found at i:37307799 original size:17 final size:17
Alignment explanation
Indices: 37307777--37307822 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
37307767 CGTGTGGCCA
*
37307777 GGCCATGTGACATACAC
1 GGCCATGTGACACACAC
37307794 GGCCATGTGACACACAC
1 GGCCATGTGACACACAC
*
37307811 GACCATGTGACA
1 GGCCATGTGACA
37307823 GCCCATGTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.30, C:0.30, G:0.24, T:0.15
Consensus pattern (17 bp):
GGCCATGTGACACACAC
Found at i:37311234 original size:52 final size:53
Alignment explanation
Indices: 37311130--37311234 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 53
37311120 CAATTAAGAA
** * * *
37311130 GTCTGACTTAATAACATGCATTGATGTTGTCTGAACTAGAGCATAGTTAATAG
1 GTCTGACTTAATAACATGCATTGATGTTGTCCAAACTAGAACATAATGAATAG
* *
37311183 GTCTGACTTAA-AGCATGCATTGATGTTGTCCAAATTAGAACATAATGAATAG
1 GTCTGACTTAATAACATGCATTGATGTTGTCCAAACTAGAACATAATGAATAG
37311235 ACATAAATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 34 0.76
53 11 0.24
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.32
Consensus pattern (53 bp):
GTCTGACTTAATAACATGCATTGATGTTGTCCAAACTAGAACATAATGAATAG
Found at i:37317165 original size:32 final size:32
Alignment explanation
Indices: 37317124--37317185 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
37317114 GAAGTGAAGA
37317124 AATGAATGGGTTTGAGATGTATTTGAAGTGGG
1 AATGAATGGGTTTGAGATGTATTTGAAGTGGG
*
37317156 AATGAATGGGTTTGAGATGTGTTTGAAGTG
1 AATGAATGGGTTTGAGATGTATTTGAAGTG
37317186 AGTAGCCAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.35
Consensus pattern (32 bp):
AATGAATGGGTTTGAGATGTATTTGAAGTGGG
Found at i:37320273 original size:42 final size:42
Alignment explanation
Indices: 37320190--37320279 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 42
37320180 CGTCATGTGC
* ***
37320190 CAGACCGTGTCACTCACTGACTTGGTACACATGGTTGTGTCT
1 CAGACCGTGTAACTCACTGACTTGGTACACATGGCCATGTCT
* *
37320232 CAGACCGTGTAATTCATTGACTTGGTACACA-GAGCCATGTCT
1 CAGACCGTGTAACTCACTGACTTGGTACACATG-GCCATGTCT
*
37320274 TAGACC
1 CAGACC
37320280 CTGTGCTAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (42 bp):
CAGACCGTGTAACTCACTGACTTGGTACACATGGCCATGTCT
Found at i:37329256 original size:27 final size:27
Alignment explanation
Indices: 37329226--37329279 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
37329216 AATTTTCACG
*
37329226 AAAAACAACAAATATTAAACAACAAAA
1 AAAAACAACAAACATTAAACAACAAAA
* *
37329253 AAAACCAATAAACATTAAACAACAAAA
1 AAAAACAACAAACATTAAACAACAAAA
37329280 GCAAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.72, C:0.17, G:0.00, T:0.11
Consensus pattern (27 bp):
AAAAACAACAAACATTAAACAACAAAA
Found at i:37329511 original size:13 final size:13
Alignment explanation
Indices: 37329493--37329558 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
37329483 ACTTCTTCAT
37329493 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
37329506 TGCTTTTGAAATG
1 TGCTTTTGAAAAG
*
37329519 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
* *
37329532 TGCTTTTGAGAAC
1 TGCTTTTGAAAAG
37329545 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
37329558 T
1 T
37329559 TTGGTTTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 2 0.05
13 39 0.91
14 2 0.05
ACGTcount: A:0.27, C:0.08, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37339331 original size:17 final size:16
Alignment explanation
Indices: 37339281--37339331 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
37339271 CACTATTCTG
37339281 TAATATAAAATTATGGAA
1 TAATATAAAATTAT--AA
37339299 TAAT-TAAAA-TATTAA
1 TAATATAAAATTA-TAA
37339314 TAATTATAAAATTATAA
1 TAA-TATAAAATTATAA
37339331 T
1 T
37339332 CTCATTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.17
16 3 0.10
17 15 0.52
18 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
TAATATAAAATTATAA
Found at i:37340296 original size:17 final size:18
Alignment explanation
Indices: 37340266--37340303 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37340256 AAAAAATCTA
37340266 AAAAATTACGAATTTTTT
1 AAAAATTACGAATTTTTT
*
37340284 AAAAATTA-TAATTTTTT
1 AAAAATTACGAATTTTTT
37340301 AAA
1 AAA
37340304 CTATACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
AAAAATTACGAATTTTTT
Found at i:37341039 original size:17 final size:19
Alignment explanation
Indices: 37340995--37341040 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
37340985 TACACAAAAC
37340995 TATTTTTA-AATTTCACTA
1 TATTTTTATAATTTCACTA
37341013 TATCTTTTATAATTTCA-TA
1 TAT-TTTTATAATTTCACTA
37341032 -ATTTTTATA
1 TATTTTTATA
37341041 TACTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 7 0.27
18 5 0.19
19 7 0.27
20 7 0.27
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTATAATTTCACTA
Found at i:37342964 original size:139 final size:139
Alignment explanation
Indices: 37342713--37342984 Score: 508
Period size: 139 Copynumber: 2.0 Consensus size: 139
37342703 GTTAGGAAAT
*
37342713 TTAATTGTTTAGATAGTAATTAAGTAAAAATGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
1 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
*
37342778 TTTTTATTTAAATGGATCAATTAGCTTTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
66 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
37342843 AATTATAAA
131 AATTATAAA
*
37342852 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGTAACAAAAGTTGGCTTC
1 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
*
37342917 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTATTGGACTTAATTTATAATTGTTC
66 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
37342982 AAT
131 AAT
37342985 GACTATTGCA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 129 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (139 bp):
TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
AATTATAAA
Found at i:37343930 original size:38 final size:38
Alignment explanation
Indices: 37343886--37343986 Score: 166
Period size: 38 Copynumber: 2.7 Consensus size: 38
37343876 ATCCAAATTG
*
37343886 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCT
1 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
* * *
37343924 GGTGTTATTCAAGCTTAATGCCTAGTAGGCTTCATTCC
1 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
37343962 GGTGTTATTCAGGCTTAGTGCCTAG
1 GGTGTTATTCAGGCTTAGTGCCTAG
37343987 CAGGTTTCGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.37
Consensus pattern (38 bp):
GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
Found at i:37344694 original size:17 final size:17
Alignment explanation
Indices: 37344667--37344709 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
37344657 CACAGGTTGT
*
37344667 CACATGGTCGTGTGACA
1 CACACGGTCGTGTGACA
*
37344684 CACTCGGTCGTGTGACA
1 CACACGGTCGTGTGACA
37344701 CACACGGTC
1 CACACGGTC
37344710 TGTTTGCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (17 bp):
CACACGGTCGTGTGACA
Found at i:37348738 original size:44 final size:44
Alignment explanation
Indices: 37348680--37348769 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
37348670 AAATTATGTG
*
37348680 TGCTTAATTCTTGGTTTAATATTTCTAGACTATTGATCCAACTT
1 TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAACTT
*
37348724 TGCTTAGTTATTGGTTTAATATTTCTAGACTATTGATCCAACTT
1 TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAACTT
37348768 TG
1 TG
37348770 GCGTGCTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.24, C:0.14, G:0.13, T:0.48
Consensus pattern (44 bp):
TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAACTT
Found at i:37348757 original size:22 final size:22
Alignment explanation
Indices: 37348690--37348758 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
37348680 TGCTTAATTC
37348690 TTGGTTTAATATTTCTAGACTA
1 TTGGTTTAATATTTCTAGACTA
* ** * *
37348712 TTGATCCAACT-TTGCTTAG-TTA
1 TTGGTTTAA-TATTTC-TAGACTA
37348734 TTGGTTTAATATTTCTAGACTA
1 TTGGTTTAATATTTCTAGACTA
37348756 TTG
1 TTG
37348759 ATCCAACTTT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
21 4 0.12
22 25 0.76
23 4 0.12
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.49
Consensus pattern (22 bp):
TTGGTTTAATATTTCTAGACTA
Found at i:37352430 original size:45 final size:45
Alignment explanation
Indices: 37352381--37352762 Score: 410
Period size: 45 Copynumber: 8.6 Consensus size: 45
37352371 ATCAAACGAG
* *
37352381 TAAGACCATAGTTGAAGGACACCATGGCACTATATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
*
37352426 TAAGACC-------AAAGACACTATGGAACTATATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
* * * *
37352464 TAAGACCATAGTTAAAAGACACTATGACACTATA-CAGGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATC-GAAAATGAA
* * *
37352509 TAAGACCATAGTTGAAAGAAACTATGACACTATA-CTGGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATC-GAAAATGAA
*
37352554 TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
* * * * * *
37352599 TAAGACCATAGTTGAAAGACAATACGGAACTATA-CCAAACTCAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAAT-GAA
* *
37352644 TAAGACCATAGTTGAAAGACAAC-ATGGCACTATACCGAAATTGAA
1 TAAGACCATAGTTGAAAGAC-ACTATGGCACTATATCGAAAATGAA
* * * * *
37352689 TAAGACCATAGTTGAAAAACATTATGGAAATATGAT-GAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTAT-ATCGAAAATGAA
*
37352734 TAAGACCATAGTTGAAAAACACTATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
37352763 TCATGTTGGA
Statistics
Matches: 287, Mismatches: 36, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
38 35 0.12
44 7 0.02
45 237 0.83
46 8 0.03
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
Found at i:37352451 original size:38 final size:38
Alignment explanation
Indices: 37352398--37352471 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
37352388 ATAGTTGAAG
*
37352398 GACACCATGGCACTATATCGAAAATGAATAAGACCAAA
1 GACACCATGGAACTATATCGAAAATGAATAAGACCAAA
*
37352436 GACACTATGGAACTATATCGAAAATGAATAAGACCA
1 GACACCATGGAACTATATCGAAAATGAATAAGACCA
37352472 TAGTTAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.18
Consensus pattern (38 bp):
GACACCATGGAACTATATCGAAAATGAATAAGACCAAA
Found at i:37352549 original size:24 final size:24
Alignment explanation
Indices: 37352478--37352549 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
37352468 ACCATAGTTA
* *
37352478 AAAGACACTATGACACTATACAGG
1 AAAGAAACTATGACACTATACTGG
* * * *
37352502 AAATAAA-TAAGAC-C-ATAGTTG
1 AAAGAAACTATGACACTATACTGG
37352523 AAAGAAACTATGACACTATACTGG
1 AAAGAAACTATGACACTATACTGG
37352547 AAA
1 AAA
37352550 TGAATAAGAC
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
21 10 0.29
22 6 0.17
23 6 0.17
24 13 0.37
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (24 bp):
AAAGAAACTATGACACTATACTGG
Found at i:37352570 original size:21 final size:21
Alignment explanation
Indices: 37352457--37352570 Score: 61
Period size: 21 Copynumber: 5.1 Consensus size: 21
37352447 ACTATATCGA
37352457 AAATGAATAAGACCATAGTT-
1 AAATGAATAAGACCATAGTTG
* * ***
37352477 AAAAGACACTATGACACTATACAGG
1 AAATGA-A-TAAGAC-C-ATAGTTG
*
37352502 AAATAAATAAGACCATAGTTG
1 AAATGAATAAGACCATAGTTG
* * *
37352523 AAA-GAAACTATGACACTATACTGG
1 AAATG-AA-TAAGAC-C-ATAGTTG
37352547 AAATGAATAAGACCATAGTTG
1 AAATGAATAAGACCATAGTTG
37352568 AAA
1 AAA
37352571 GACACTATGG
Statistics
Matches: 66, Mismatches: 18, Indels: 19
0.64 0.17 0.18
Matches are distributed among these distances:
20 5 0.08
21 18 0.27
22 12 0.18
23 12 0.18
24 14 0.21
25 5 0.08
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (21 bp):
AAATGAATAAGACCATAGTTG
Found at i:37355538 original size:20 final size:21
Alignment explanation
Indices: 37355505--37355559 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 21
37355495 CAAAAATTAC
37355505 CAAATAATTCAAAATAA-TTTT
1 CAAA-AATTCAAAATAACTTTT
* *
37355526 CAAAAATTTAAAAAAACTTTT
1 CAAAAATTCAAAATAACTTTT
37355547 --AAAATTCAAAATA
1 CAAAAATTCAAAATA
37355560 TTTATAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 11 0.38
20 10 0.34
21 8 0.28
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
CAAAAATTCAAAATAACTTTT
Found at i:37356231 original size:27 final size:27
Alignment explanation
Indices: 37356201--37356347 Score: 136
Period size: 27 Copynumber: 5.5 Consensus size: 27
37356191 GAGTTTGCCG
37356201 CAAAGGCGTTCCTTTCATATTGCGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* *
37356228 CAAAGGCGTTCCTTTTATATTGTGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* * * **
37356255 CAAAGGTGTTCTTTTAATATTGCATCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* * *
37356282 CAAA--TGTTCTTTTCATATTGTGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
** * * *
37356307 CAAAGGCACTCTTTTCATATTGCACTA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
*
37356334 CAAAGGCATTCCTT
1 CAAAGGCGTTCCTT
37356348 ATCTATCATG
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
25 21 0.21
27 77 0.79
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (27 bp):
CAAAGGCGTTCCTTTCATATTGCGCCA
Found at i:37359360 original size:119 final size:119
Alignment explanation
Indices: 37359167--37359517 Score: 675
Period size: 119 Copynumber: 2.9 Consensus size: 119
37359157 TTGTGGGAAC
37359167 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
37359232 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
37359286 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
*
37359351 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAAGACTTTTTCTTTATGGGAGT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
37359405 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
* *
37359470 TTGTGAAATCTTTCTCGATTTCAAGGCTTCTTAGGACTTTTTTTTTAT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTAT
37359518 TTTCTTGCTG
Statistics
Matches: 228, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 228 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (119 bp):
CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
Done.