Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 129 of 199
Found at i:37360330 original size:60 final size:60
Alignment explanation
Indices: 37360264--37360384 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
37360254 AGTTGATAAA
37360264 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
1 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
37360324 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
1 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
37360384 T
1 T
37360385 GAAAATCCAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (60 bp):
TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
Found at i:37361580 original size:17 final size:19
Alignment explanation
Indices: 37361558--37361595 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
37361548 TCGAATCAAC
37361558 TCAAATA-ATAATTC-GAA
1 TCAAATATATAATTCAGAA
37361575 TCAAATATTATAATTCAGAA
1 TCAAATA-TATAATTCAGAA
37361595 T
1 T
37361596 AATTCAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (19 bp):
TCAAATATATAATTCAGAA
Found at i:37361714 original size:19 final size:19
Alignment explanation
Indices: 37361672--37361777 Score: 85
Period size: 19 Copynumber: 5.7 Consensus size: 19
37361662 ATCTCCCAAC
*
37361672 AAAAATTATAAAAGATTTTCA
1 AAAAATTAT-AAA-ATTTTTA
* *
37361693 AATATTTATAAAATTTTT-
1 AAAAATTATAAAATTTTTA
* *
37361711 --AAATT-TTATATTTTTA
1 AAAAATTATAAAATTTTTA
*
37361727 AAAAATTATAATATTTTTA
1 AAAAATTATAAAATTTTTA
* *
37361746 AAAAATTATAAAAATTCTA
1 AAAAATTATAAAATTTTTA
*
37361765 AAAAATTCTAAAA
1 AAAAATTATAAAA
37361778 AATTAAATTC
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
15 8 0.12
16 3 0.04
18 5 0.07
19 43 0.62
20 3 0.04
21 7 0.10
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (19 bp):
AAAAATTATAAAATTTTTA
Found at i:37361759 original size:10 final size:10
Alignment explanation
Indices: 37361725--37361782 Score: 57
Period size: 10 Copynumber: 6.0 Consensus size: 10
37361715 TTTATATTTT
37361725 TAAAAAATTA
1 TAAAAAATTA
* * *
37361735 T-AATATTTT
1 TAAAAAATTA
37361744 TAAAAAATTA
1 TAAAAAATTA
*
37361754 T-AAAAATTC
1 TAAAAAATTA
*
37361763 TAAAAAATTC
1 TAAAAAATTA
37361773 TAAAAAATTA
1 TAAAAAATTA
37361783 AATTCAAGTC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 14 0.37
10 24 0.63
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:37370656 original size:16 final size:16
Alignment explanation
Indices: 37370637--37370679 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
37370627 TATTAATGTT
37370637 AAATTTTATTATTAAA
1 AAATTTTATTATTAAA
* *
37370653 AAATTGTAATATTAAA
1 AAATTTTATTATTAAA
* *
37370669 TAACTTTATTA
1 AAATTTTATTA
37370680 AAATAATAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
AAATTTTATTATTAAA
Found at i:37370831 original size:20 final size:20
Alignment explanation
Indices: 37370790--37370831 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
37370780 ATTAATATTT
* *
37370790 TAATATTTTTAAATTTAAAA
1 TAATATTATTAAATATAAAA
37370810 TAATATTATT-AATATAATAA
1 TAATATTATTAAATATAA-AA
37370830 TA
1 TA
37370832 CTTGACTGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATATTATTAAATATAAAA
Found at i:37372335 original size:15 final size:16
Alignment explanation
Indices: 37372315--37372347 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
37372305 AATTGGTTCT
*
37372315 AATAATTGA-AAATTA
1 AATAATTCATAAATTA
37372330 AATAATTCATAAATTA
1 AATAATTCATAAATTA
37372346 AA
1 AA
37372348 AAGAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATTCATAAATTA
Found at i:37376358 original size:9 final size:8
Alignment explanation
Indices: 37376344--37376451 Score: 51
Period size: 8 Copynumber: 13.5 Consensus size: 8
37376334 ATAAAATATA
37376344 TTATTATT
1 TTATTATT
37376352 GTTATTATT
1 -TTATTATT
*
37376361 TTATTATA
1 TTATTATT
*
37376369 TTATAAATT
1 TTAT-TATT
**
37376378 AAATTGATT
1 TTATT-ATT
*
37376387 ATATTATT
1 TTATTATT
* *
37376395 ATATTATA
1 TTATTATT
37376403 TTA-TATT
1 TTATTATT
* *
37376410 ATATTATA
1 TTATTATT
37376418 TTA-TATT
1 TTATTATT
* *
37376425 ATATTATA
1 TTATTATT
37376433 TTA-TATT
1 TTATTATT
* *
37376440 ATATTATA
1 TTATTATT
37376448 TTAT
1 TTAT
37376452 GAAATAAATT
Statistics
Matches: 73, Mismatches: 21, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
7 15 0.21
8 39 0.53
9 19 0.26
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (8 bp):
TTATTATT
Found at i:37376370 original size:5 final size:5
Alignment explanation
Indices: 37376340--37376451 Score: 126
Period size: 5 Copynumber: 22.6 Consensus size: 5
37376330 AATCATAAAA
* * *
37376340 TATAT TATTAT TGTTAT TAT-T T-TAT TATAT TATAAAT TAAAT T-GAT
1 TATAT TA-TAT T-ATAT TATAT TATAT TATAT TAT--AT TATAT TATAT
37376386 TATA- T-TAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
37376434 TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TAT
37376452 GAAATAAATT
Statistics
Matches: 93, Mismatches: 5, Indels: 18
0.80 0.04 0.16
Matches are distributed among these distances:
3 3 0.03
4 9 0.10
5 69 0.74
6 8 0.09
7 4 0.04
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:37376566 original size:33 final size:34
Alignment explanation
Indices: 37376520--37376583 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
37376510 AAATGAGTAC
*
37376520 ATTTGTATTATTTATAAATAGTTAGTAAAAAGAT
1 ATTTGTATTATTTATAAATAATTAGTAAAAAGAT
* *
37376554 ATTT-TATTATTTATTATTAATTAGTAAAAA
1 ATTTGTATTATTTATAAATAATTAGTAAAAA
37376584 AATTTATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (34 bp):
ATTTGTATTATTTATAAATAATTAGTAAAAAGAT
Found at i:37376706 original size:3 final size:3
Alignment explanation
Indices: 37376698--37376752 Score: 53
Period size: 3 Copynumber: 19.0 Consensus size: 3
37376688 AAATAGATAT
* * *
37376698 TTA TTA TTA TTA TTA TAA TTA TTG TTA TTA TTA TT- TAA TTGA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
37376742 TTA -TA TTA TTA
1 TTA TTA TTA TTA
37376753 GATTAATGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
2 4 0.10
3 37 0.88
4 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:37376934 original size:16 final size:15
Alignment explanation
Indices: 37376918--37376948 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
37376908 AACAAAAAGA
37376918 AATAGAAAGAAACAG
1 AATAGAAAGAAACAG
37376933 AATAGAAACGAAACAG
1 AATAGAAA-GAAACAG
37376949 GGAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.65, C:0.10, G:0.19, T:0.06
Consensus pattern (15 bp):
AATAGAAAGAAACAG
Found at i:37376938 original size:15 final size:16
Alignment explanation
Indices: 37376905--37376948 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
37376895 AAGCATAAAA
*
37376905 AGAAAC-AAAAAGAAAT
1 AGAAACGAAACAG-AAT
37376921 AGAAA-GAAACAGAAT
1 AGAAACGAAACAGAAT
37376936 AGAAACGAAACAG
1 AGAAACGAAACAG
37376949 GGAGAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.68, C:0.09, G:0.18, T:0.05
Consensus pattern (16 bp):
AGAAACGAAACAGAAT
Found at i:37376954 original size:26 final size:25
Alignment explanation
Indices: 37376901--37376987 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 25
37376891 ATGAAAGCAT
* * **
37376901 AAAAAGAAACAAAAAGAAATAGAAAG
1 AAAAAGAAA-GAAAAGAAAAAGGGAG
* * *
37376927 AAACAGAATAGAAACGAAACAGGGAG
1 AAAAAGAA-AGAAAAGAAAAAGGGAG
37376953 AAAAAGAAAGAAAAGAAAAAGGGA-
1 AAAAAGAAAGAAAAGAAAAAGGGAG
37376977 AAGAAAGAAAG
1 AA-AAAGAAAG
37376988 GAGAAATAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.04
25 22 0.44
26 25 0.50
27 1 0.02
ACGTcount: A:0.70, C:0.05, G:0.23, T:0.02
Consensus pattern (25 bp):
AAAAAGAAAGAAAAGAAAAAGGGAG
Found at i:37377958 original size:38 final size:39
Alignment explanation
Indices: 37377856--37377963 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 39
37377846 AACTTCAAGT
* **
37377856 CGATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA--ACTTTACTTCGGATAGAGC
* * *
37377897 CAATGAGATACTGGGTATC-ACTTTACTTCGG-T-GAGGC
1 CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGA-GC
*
37377934 CGATGAGACACTGGGTGTCAACTTTGCTTC
1 CGATGAGACACTGGGTGTCAACTTTACTTC
37377964 AAAATATCCG
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
36 2 0.04
37 17 0.31
38 20 0.36
41 16 0.29
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
Found at i:37383854 original size:22 final size:23
Alignment explanation
Indices: 37383829--37383873 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
37383819 TTTTGTTTGC
*
37383829 AAAATCA-AAGTTTTCTTAAAAA
1 AAAATCACAACTTTTCTTAAAAA
* *
37383851 AAAATTACTACTTTTCTTAAAAA
1 AAAATCACAACTTTTCTTAAAAA
37383874 TCAAAGCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.51, C:0.11, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAATCACAACTTTTCTTAAAAA
Found at i:37384414 original size:21 final size:20
Alignment explanation
Indices: 37384372--37384414 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
37384362 CTATGGCCAA
*
37384372 AAAAGAAAAAAAGATACAAG
1 AAAAGAAAAAAAGAAACAAG
*
37384392 AAAAGAAAAAAAAGAAACTAG
1 AAAAG-AAAAAAAGAAACAAG
37384413 AA
1 AA
37384415 TGCTTGTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.77, C:0.05, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAAAAGAAACAAG
Found at i:37388714 original size:23 final size:23
Alignment explanation
Indices: 37388688--37388739 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
37388678 TGATTTTTAA
* *
37388688 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTAATAAT
37388711 ATTTAGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTAATAAT
37388734 ATTTAG
1 ATTTAG
37388740 GTAAAATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTAATAAT
Found at i:37389605 original size:5 final size:5
Alignment explanation
Indices: 37389595--37389620 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37389585 TTCAAATCTA
37389595 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
37389621 ACACTTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:37396979 original size:23 final size:23
Alignment explanation
Indices: 37396953--37397004 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
37396943 TGATTTTTAA
*
37396953 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
37396976 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
37396999 ATTTAG
1 ATTTAG
37397005 GTAAAATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:37396980 original size:13 final size:13
Alignment explanation
Indices: 37396962--37397004 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
37396952 AATTTTGAAT
37396962 TATTTAGTGATAA
1 TATTTAGTGATAA
*
37396975 TATTTA--GA-AT
1 TATTTAGTGATAA
37396985 TATTTAGTGATAA
1 TATTTAGTGATAA
37396998 TATTTAG
1 TATTTAG
37397005 GTAAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:37401526 original size:22 final size:22
Alignment explanation
Indices: 37401498--37401542 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37401488 CTTGGTACAC
37401498 TGTTCAACCTAATATTTTATTG
1 TGTTCAACCTAATATTTTATTG
37401520 TGTTCAACCTAATATTTTATTG
1 TGTTCAACCTAATATTTTATTG
37401542 T
1 T
37401543 CTTTGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.51
Consensus pattern (22 bp):
TGTTCAACCTAATATTTTATTG
Found at i:37402115 original size:70 final size:70
Alignment explanation
Indices: 37402018--37402315 Score: 260
Period size: 70 Copynumber: 4.3 Consensus size: 70
37402008 TTGACGATTA
* *** *
37402018 AAGGCTCGCAAGTTCAATACTACAGCCTAGAAAACAATTAGCGCGAGCTTACGCTCCCAGCTAAT
1 AAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAAT
*
37402083 ATCCT
66 ATCAT
* * * * * *
37402088 AAGGCTCACAGGTTCAATACCACAGCCTCCCAAACAGTTAGTGCGAG-TCTACGCTCCTAGTTGA
1 AAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCT-TACGCTCCCAGCTAA
37402152 TATCAT
65 TATCAT
* * * *
37402158 AAGGCTCGCAGGTTCAATATTGCAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAACTGAT
1 AAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAAT
**
37402223 ATTTT
66 ATCAT
** * * *** * * ** * **
37402228 AAGTATTGTAGGTTCAATACCGTAGTCTCCAAAACAGTTAGCGCGA-CTTATACTCCGAGCTGGT
1 AAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAAT
37402292 AT-ATT
66 ATCA-T
*
37402297 AAGGCTCCCAGGTTCAATA
1 AAGGCTCGCAGGTTCAATA
37402316 TCGCAGTGAT
Statistics
Matches: 183, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
69 31 0.17
70 151 0.83
71 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (70 bp):
AAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAAT
ATCAT
Found at i:37402248 original size:140 final size:139
Alignment explanation
Indices: 37402018--37402321 Score: 322
Period size: 140 Copynumber: 2.2 Consensus size: 139
37402008 TTGACGATTA
* * * * *
37402018 AAGGCTCGCAAGTTCAATACTACAGCCTAGAAAACAATTAGCGCGAGCTTACGCTCCCAGCTAAT
1 AAGGCTCGCAGGTTCAATATTGCAGCCTACAAAACAATTAGCGCGAGCTTACGCTCCCAACTAAT
* * * * * *
37402083 ATCCTAAGGCTCACAGGTTCAATACCACAGCCTCCCAAACAGTTAGTGCGAGTCTACGCTCCTAG
66 ATCCTAAGGATCACAGGTTCAATACCACAGCCTCCAAAACAGTTAGCGCGACT-TACACTCCGAG
*
37402148 TTGATATCA-T
130 CTGATAT-ATT
* * * *
37402158 AAGGCTCGCAGGTTCAATATTGCAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAACTGAT
1 AAGGCTCGCAGGTTCAATATTGCAGCCTACAAAACAATTAGCGCGAGCTTACGCTCCCAACTAAT
** * *** ** * *
37402223 ATTTTAAGTATTGTAGGTTCAATACCGTAGTCTCCAAAACAGTTAGCGCGACTTATACTCCGAGC
66 ATCCTAAGGATCACAGGTTCAATACCACAGCCTCCAAAACAGTTAGCGCGACTTACACTCCGAGC
*
37402288 TGGTATATT
131 TGATATATT
* *
37402297 AAGGCTCCCAGGTTCAATATCGCAG
1 AAGGCTCGCAGGTTCAATATTGCAG
37402322 TGATACGAGT
Statistics
Matches: 134, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
138 1 0.01
139 37 0.28
140 96 0.72
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (139 bp):
AAGGCTCGCAGGTTCAATATTGCAGCCTACAAAACAATTAGCGCGAGCTTACGCTCCCAACTAAT
ATCCTAAGGATCACAGGTTCAATACCACAGCCTCCAAAACAGTTAGCGCGACTTACACTCCGAGC
TGATATATT
Found at i:37404574 original size:70 final size:70
Alignment explanation
Indices: 37403847--37404587 Score: 636
Period size: 70 Copynumber: 10.6 Consensus size: 70
37403837 CCCCCTATCA
* * * * * **
37403847 CGCAGCCTCCAAAACAGTTAGCACGAGCCTACGCTCCTAGTTGATATCTTAAGGCTTGCAAATTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37403912 AATAC
66 AATAC
* ** * * ** *
37403917 TGCAGCCTAAAAAACAGTTAGTGCGAGCCTACGCTCCTAGCTGGTATCTTAAGGCTTACAAGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37403982 AATAC
66 AATAC
** * * ** * **
37403987 AACAACCTTCAAAACAGTTAGCGCGAGCCTATACTCCTAGCTGGTATCTTAAGGCTCATAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
*
37404052 AATAT
66 AATAC
* * * * * *
37404057 CGCAACCTTCAACACAGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGATCGCAGGTTT
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404122 AATAC
66 AATAC
* * * * * *
37404127 CTCAGCCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAGCTGGTATCCTAAGGCTTGCAGGTCC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404192 AATAC
66 AATAC
* ** * ** * * ** * * *
37404197 CGTAGCCTTTAAAACAATTAAAGCGAGCTTACACTCCCAATTGGCATCTTAAAGCTTGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404262 AATAC
66 AATAC
* * * ** ** ** *
37404267 CGCAGCTTCTAAAAAAGTTAGCATGAGCCTACATTCCCAATTGATATCTTAAGGCTCGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404332 AATAC
66 AATAC
* * * * ** ** * * *
37404337 CGCAGCTTCTAAAAAAGTTAGCGCGAACCTACATTCCCAATTGATATCCTAAGGCTCGTAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404402 AATAC
66 AATAC
* * * * * * * *
37404407 CGTAGCCTCCAAAATAGTTAACGCGAGCTTATGTTCCCAACTGGTATCCTAAGGCTCGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
*
37404472 AATAT
66 AATAC
* * * * * * * *
37404477 CGTAGCCTCCAAAATAGTTAGTGTGAGCTTACGCTCCTAGCTGGTATTTTAAGGCTCACAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
37404542 AATAC
66 AATAC
* * ** * *
37404547 CGTAGCCTCCTAAACAGTTAGCATGAGCTTACGTTCCCAGC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGC
37404588 CGATATTATA
Statistics
Matches: 559, Mismatches: 112, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 559 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (70 bp):
CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
AATAC
Found at i:37408698 original size:15 final size:15
Alignment explanation
Indices: 37408678--37408714 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
37408668 TTGATTGTTG
37408678 TGAGAAGTTTGGTAA
1 TGAGAAGTTTGGTAA
37408693 TGAGAAGTTTGGTAA
1 TGAGAAGTTTGGTAA
37408708 TGAGAAG
1 TGAGAAG
37408715 GTGCATGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (15 bp):
TGAGAAGTTTGGTAA
Found at i:37413035 original size:24 final size:24
Alignment explanation
Indices: 37413008--37413064 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
37412998 CCACTCGAGC
*
37413008 TGCTGTTGAGGCACCCACTCAACT
1 TGCTGTTGAGGCACCCACTCAAAT
** * *
37413032 TGCTGCCGAGGCACCTATTCAAAT
1 TGCTGTTGAGGCACCCACTCAAAT
*
37413056 TGCTATTGA
1 TGCTGTTGA
37413065 AGAACCTGAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
TGCTGTTGAGGCACCCACTCAAAT
Found at i:37414172 original size:5 final size:5
Alignment explanation
Indices: 37414164--37414196 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
37414154 TTTGATTTAA
*
37414164 AAAAC AAAAC AAGAC AAAAC AAAA- AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
37414197 ATGTAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.82, C:0.15, G:0.03, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:37416705 original size:19 final size:19
Alignment explanation
Indices: 37416683--37416722 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37416673 TCATTTTAGA
* *
37416683 TAATTTATGTTATTTTGGT
1 TAATTAATGTTAATTTGGT
*
37416702 TAATTAATTTTAATTTGGT
1 TAATTAATGTTAATTTGGT
37416721 TA
1 TA
37416723 TTCATAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (19 bp):
TAATTAATGTTAATTTGGT
Found at i:37417902 original size:49 final size:51
Alignment explanation
Indices: 37417763--37417969 Score: 256
Period size: 55 Copynumber: 3.9 Consensus size: 51
37417753 GCATATTTGT
* * *
37417763 ATTCATAAATAAAGTTGTGTTTTTGTTTATTTATGTTTCATTGAATGTTTTCTTGC
1 ATTCATAAATAAAG-TGTG---TT-TTTATTTATGCTTCATTGATTGTTTTGTTGC
37417819 ATTCATAAATAAAGTTGTGTTTTCTTTATTTATGCTTCATTGATTGTTTTGTTGC
1 ATTCATAAATAAAG-TGTG--TT-TTTATTTATGCTTCATTGATTGTTTTGTTGC
37417874 ATTCATAAATAAAGT-TG-TTTTATTTATGCTTCATTGATTGTTTTGTTGC
1 ATTCATAAATAAAGTGTGTTTTTATTTATGCTTCATTGATTGTTTTGTTGC
* * *
37417923 ATTCAGAAATAAAGTGGTGTTTTTAATTATGCTTCATTGTTTGTTTT
1 ATTCATAAATAAAGT-GTGTTTTTATTTATGCTTCATTGATTGTTTT
37417970 TTGATCGGCT
Statistics
Matches: 141, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
49 45 0.32
50 1 0.01
51 2 0.01
52 25 0.18
53 2 0.01
54 1 0.01
55 46 0.33
56 19 0.13
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.54
Consensus pattern (51 bp):
ATTCATAAATAAAGTGTGTTTTTATTTATGCTTCATTGATTGTTTTGTTGC
Found at i:37419359 original size:11 final size:12
Alignment explanation
Indices: 37419343--37419384 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
37419333 GAATTCAATC
37419343 ATTCAATGGAG-
1 ATTCAATGGAGA
37419354 ATTCAATGGATGA
1 ATTCAATGGA-GA
* *
37419367 ATTTAATGGAGT
1 ATTCAATGGAGA
37419379 ATTCAA
1 ATTCAA
37419385 GATGGAAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 10 0.38
12 7 0.27
13 9 0.35
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.33
Consensus pattern (12 bp):
ATTCAATGGAGA
Found at i:37422580 original size:11 final size:11
Alignment explanation
Indices: 37422551--37422589 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37422541 AATGATGAGA
* *
37422551 ATGAATGAGGA
1 ATGATTGAGGG
37422562 ATGATTGAGGG
1 ATGATTGAGGG
*
37422573 ATGCTTGAGGG
1 ATGATTGAGGG
37422584 ATGATT
1 ATGATT
37422590 AATGAAGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.31, C:0.03, G:0.38, T:0.28
Consensus pattern (11 bp):
ATGATTGAGGG
Found at i:37422734 original size:14 final size:14
Alignment explanation
Indices: 37422706--37422734 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37422696 GCTTAGTTGC
37422706 TTTTGACTTGATTT
1 TTTTGACTTGATTT
37422720 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
37422733 TT
1 TT
37422735 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:37431309 original size:50 final size:50
Alignment explanation
Indices: 37431185--37431481 Score: 299
Period size: 50 Copynumber: 5.8 Consensus size: 50
37431175 GATAATAACA
* * ** * ** * **
37431185 TGCCAAAGCCATGTCCCAGACATGGTATTACATGGGATGTTTTTTGT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * **
37431234 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** **
37431284 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
37431334 TGCCAATGCCATGTCCTAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
37431384 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
37431440 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37431482 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
49 37 0.18
50 126 0.61
53 2 0.01
56 41 0.20
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:37432055 original size:12 final size:12
Alignment explanation
Indices: 37432038--37432063 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37432028 TTATACCATA
37432038 AAACATCAAAAT
1 AAACATCAAAAT
37432050 AAACATCAAAAT
1 AAACATCAAAAT
37432062 AA
1 AA
37432064 GCTCTTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACATCAAAAT
Found at i:37435332 original size:25 final size:25
Alignment explanation
Indices: 37435304--37435359 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
37435294 TTAAAATTTT
*
37435304 AATTAATAAAAAATATTA-ATAATTC
1 AATTAATAAAAAA-ATTAGATAATTA
**
37435329 AATTAATTGAAAAATTAGATAATTA
1 AATTAATAAAAAAATTAGATAATTA
37435354 AATTAA
1 AATTAA
37435360 AATTTCGGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
AATTAATAAAAAAATTAGATAATTA
Found at i:37435915 original size:16 final size:15
Alignment explanation
Indices: 37435890--37435923 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37435880 AAAGCTGATA
*
37435890 ATAATTAATATATATT
1 ATAATAAATATA-ATT
37435906 ATAATAAATATAATT
1 ATAATAAATATAATT
37435921 ATA
1 ATA
37435924 TATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:37435923 original size:22 final size:20
Alignment explanation
Indices: 37435887--37435933 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
37435877 AATAAAGCTG
37435887 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
37435906 ATAATAAATATAATTATATATTA
1 ATAAT-AAT-TAA-TATATATTA
37435929 ATAAT
1 ATAAT
37435934 TATCATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 3 0.12
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:37435947 original size:20 final size:18
Alignment explanation
Indices: 37435888--37435947 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 18
37435878 ATAAAGCTGA
37435888 TAATAATTAATATATATTA-
1 TAATAATT-ATAT-TATTAT
*
37435907 TAATAAATATAATTATATAT
1 TAATAATTAT-ATTAT-TAT
37435927 TAATAATTATCATCTATTAT
1 TAATAATTAT-AT-TATTAT
37435947 T
1 T
37435948 TTTTTATTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 5 0.15
19 11 0.32
20 15 0.44
21 3 0.09
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATAATTATATTATTAT
Found at i:37436047 original size:30 final size:30
Alignment explanation
Indices: 37435991--37436051 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
37435981 CTTTTTTAAC
* *
37435991 ATATTTACAAAAAGAGGCATCTAATTTTTA
1 ATATTTACAAAAAGAGGCACCAAATTTTTA
*
37436021 ATATTTATAAAAAGA-GCAACCAAATTTTTA
1 ATATTTACAAAAAGAGGC-ACCAAATTTTTA
37436051 A
1 A
37436052 AAATAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
ATATTTACAAAAAGAGGCACCAAATTTTTA
Found at i:37442015 original size:24 final size:24
Alignment explanation
Indices: 37441988--37442036 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37441978 ACAAAAAGCT
*
37441988 ATCCTTAAATTTCCCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
*
37442012 ATCCCTAAATTTCTCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
37442036 A
1 A
37442037 CTCATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (24 bp):
ATCCCTAAATTTCCCTAAAATTAG
Found at i:37443329 original size:50 final size:50
Alignment explanation
Indices: 37443143--37443389 Score: 208
Period size: 50 Copynumber: 4.8 Consensus size: 50
37443133 GATAATGACA
* ** * * * *
37443143 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * * * ** * *
37443192 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* ** *
37443242 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTGTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * *
37443292 TGCCAACGCCATGTCCCAGACACGGTCTTACATGGGACCTCTCATAGTCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--A-TCTC---AG
* * *
37443348 TGCCAATGCCATGTCCCAGACAAGGTGTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37443390 TTACCCAAAT
Statistics
Matches: 156, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
49 37 0.24
50 75 0.48
52 1 0.01
53 4 0.03
56 39 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:37450544 original size:79 final size:81
Alignment explanation
Indices: 37450408--37450592 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
37450398 TTGAATGATG
* *
37450408 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
37450472 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37450487 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37450549 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
37450567 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37450593 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:37450606 original size:40 final size:40
Alignment explanation
Indices: 37450409--37450592 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
37450399 TGAATGATGT
* * * *
37450409 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37450449 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37450489 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37450527 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37450568 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37450593 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37450614 original size:79 final size:79
Alignment explanation
Indices: 37450461--37450625 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
37450451 GGACTAAGAT
* * **
37450461 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37450526 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37450540 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37450603 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37450619 CCGAAGG
1 CCGAAGG
37450626 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37453581 original size:22 final size:21
Alignment explanation
Indices: 37453535--37453582 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
37453525 ATAGACCACT
*
37453535 ACATAATTGCCGATAACGGCC
1 ACATAATTGCAGATAACGGCC
* *
37453556 ACATAATTGCAGTTAAACTGCC
1 ACATAATTGCAGAT-AACGGCC
37453578 ACATA
1 ACATA
37453583 GCTTCCTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (21 bp):
ACATAATTGCAGATAACGGCC
Found at i:37460787 original size:15 final size:16
Alignment explanation
Indices: 37460767--37460825 Score: 59
Period size: 15 Copynumber: 3.8 Consensus size: 16
37460757 TACAGTTTCT
*
37460767 TATAGTCTCACAA-TC
1 TATAGTTTCACAAGTC
*
37460782 TATAGTTTTCACAATTC
1 TATAG-TTTCACAAGTC
*
37460799 TATAATTTCA-AAGTC
1 TATAGTTTCACAAGTC
*
37460814 TATAGTGTCACA
1 TATAGTTTCACA
37460826 TCTAAAGAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 17 0.47
16 13 0.36
17 6 0.17
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (16 bp):
TATAGTTTCACAAGTC
Found at i:37460795 original size:16 final size:17
Alignment explanation
Indices: 37460774--37460819 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
37460764 TCTTATAGTC
37460774 TCACAA-TCTATAGTTT
1 TCACAAGTCTATAGTTT
* *
37460790 TCACAATTCTATA-ATT
1 TCACAAGTCTATAGTTT
37460806 TCA-AAGTCTATAGT
1 TCACAAGTCTATAGT
37460820 GTCACATCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 8 0.32
16 11 0.44
17 6 0.24
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (17 bp):
TCACAAGTCTATAGTTT
Found at i:37467303 original size:30 final size:30
Alignment explanation
Indices: 37467246--37467307 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
37467236 GCTTTTTAAA
* *
37467246 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
37467276 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
37467306 AA
1 AA
37467308 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:37474609 original size:22 final size:22
Alignment explanation
Indices: 37474582--37474628 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
37474572 TTATTAAACC
37474582 AAATTAAATTAGA-TATAAATTA
1 AAATT-AATTAGATTATAAATTA
* *
37474604 AAATTAATTATATTATGAATTA
1 AAATTAATTAGATTATAAATTA
37474626 AAA
1 AAA
37474629 CATATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATTAATTAGATTATAAATTA
Found at i:37482237 original size:34 final size:34
Alignment explanation
Indices: 37482194--37482266 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
37482184 TCATGTTGTG
*
37482194 TAGGTTGGCCGAATGTGGATGGAAGCATTTAAGC
1 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
37482228 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
1 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
37482262 TAGGT
1 TAGGT
37482267 GCATGCACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.27, C:0.11, G:0.34, T:0.27
Consensus pattern (34 bp):
TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
Found at i:37485516 original size:20 final size:19
Alignment explanation
Indices: 37485491--37485578 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 19
37485481 GCGAAAATAC
37485491 AAAAGAAAAGAAAAATGAAA
1 AAAAGAAAAGAAAAA-GAAA
37485511 AAAAG-AAAGAAAATTCA-AAA
1 AAAAGAAAAGAAAA---AGAAA
*
37485531 AAAAGAGAATG-AAAAGAAA
1 AAAAGA-AAAGAAAAAGAAA
** *
37485550 GCAAGAAAAGAAAAAGATGA
1 AAAAGAAAAGAAAAAGA-AA
37485570 AAAAGAAAA
1 AAAAGAAAA
37485579 ATTGAGTGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
18 4 0.08
19 21 0.40
20 21 0.40
21 3 0.06
22 4 0.08
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAGAAAAAGAAA
Found at i:37485550 original size:15 final size:15
Alignment explanation
Indices: 37485511--37485577 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
37485501 AAAAATGAAA
* *
37485511 AAAAGAAAGAAAATTC
1 AAAAGAAAGAGAA-TG
*
37485527 AAAAAAAAGAGAATG
1 AAAAGAAAGAGAATG
*
37485542 AAAAGAAAG-CAA-G
1 AAAAGAAAGAGAATG
*
37485555 AAAAGAAAAAG-ATG
1 AAAAGAAAGAGAATG
37485569 AAAAAGAAA
1 -AAAAGAAA
37485578 AATTGAGTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
13 10 0.24
14 3 0.07
15 17 0.41
16 11 0.27
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.06
Consensus pattern (15 bp):
AAAAGAAAGAGAATG
Found at i:37485556 original size:35 final size:36
Alignment explanation
Indices: 37485483--37485566 Score: 102
Period size: 35 Copynumber: 2.4 Consensus size: 36
37485473 AGAAAAGAGC
37485483 GAAAATACAAAAGAAAAGAAAAATGAAAAAAAGAAA
1 GAAAATACAAAAGAAAAGAAAAATGAAAAAAAGAAA
* * *
37485519 GAAAATTCAAAA-AAAAG-AGAATGAAAAGAAAGCAA
1 GAAAATACAAAAGAAAAGAAAAATGAAAA-AAAGAAA
*
37485554 GAAAAGA-AAAAGA
1 GAAAATACAAAAGA
37485567 TGAAAAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 13 0.32
35 17 0.41
36 11 0.27
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.06
Consensus pattern (36 bp):
GAAAATACAAAAGAAAAGAAAAATGAAAAAAAGAAA
Found at i:37489719 original size:24 final size:23
Alignment explanation
Indices: 37489682--37489737 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
37489672 CCAAATCCCT
* **
37489682 TACCATTTCATACCAATTTCCAAA
1 TACCAATTCATACCAA-AACCAAA
*
37489706 TACCAATTCGTACCAAAACCAAA
1 TACCAATTCATACCAAAACCAAA
37489729 TACCAATTC
1 TACCAATTC
37489738 TTAATTGACT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 14 0.50
24 14 0.50
ACGTcount: A:0.41, C:0.30, G:0.02, T:0.27
Consensus pattern (23 bp):
TACCAATTCATACCAAAACCAAA
Found at i:37490258 original size:259 final size:260
Alignment explanation
Indices: 37489798--37490317 Score: 1033
Period size: 259 Copynumber: 2.0 Consensus size: 260
37489788 TTAAACCAAA
37489798 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
1 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
37489863 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
66 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
37489928 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
131 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
37489993 CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
196 CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
37490058 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTT-TTCT
1 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
37490122 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
66 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
37490187 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
131 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
37490252 CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
196 CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
37490317 T
1 T
37490318 GTACTTAGTA
Statistics
Matches: 260, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
259 200 0.77
260 60 0.23
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (260 bp):
TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
Found at i:37518010 original size:29 final size:29
Alignment explanation
Indices: 37517968--37518023 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
37517958 TGAATGATCA
37517968 TAAAATCACACCCAATTCATGCATAAACT
1 TAAAATCACACCCAATTCATGCATAAACT
*
37517997 TAAAATCGCACCCAATTCATGCATAAA
1 TAAAATCACACCCAATTCATGCATAAA
37518024 TCTTGGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.45, C:0.27, G:0.05, T:0.23
Consensus pattern (29 bp):
TAAAATCACACCCAATTCATGCATAAACT
Found at i:37530347 original size:7 final size:6
Alignment explanation
Indices: 37530317--37530358 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
37530307 TTTGTTTTGA
*
37530317 TTTAAT TTTAAT TTTAGT TTTAAT CTTTAAT CTTTAAT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT -TTTAAT -TTTAAT TTTA
37530359 TTTATTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 20 0.61
7 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (6 bp):
TTTAAT
Found at i:37544462 original size:18 final size:20
Alignment explanation
Indices: 37544434--37544470 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
37544424 AAAATTAATG
37544434 TTTCTAAAAATATT-TTTAT
1 TTTCTAAAAATATTATTTAT
37544453 TTTC-AAAAATATTATTTA
1 TTTCTAAAAATATTATTTA
37544471 CCAATTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTCTAAAAATATTATTTAT
Found at i:37549415 original size:27 final size:27
Alignment explanation
Indices: 37549384--37549633 Score: 302
Period size: 27 Copynumber: 9.3 Consensus size: 27
37549374 AGAGGTTGAT
* * **
37549384 AAATGACTGAATTACTCTTACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
37549411 AAATGACCGAATTACCCCCATAAGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
*
37549438 AAATGACTGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
37549465 AAATGATCGAATTATCCCCTCAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
*
37549492 AAATGACCGAATTACCCCCACAGGATA
1 AAATGACCGAATTACCCCCACAGGGTA
37549519 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * * *
37549546 AAATGATCGAAATACCCCTATAGGGAA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
37549573 AAATGACCAAAATAACCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
37549600 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
37549627 AAATGAC
1 AAATGAC
37549634 TGTTATACCC
Statistics
Matches: 193, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCACAGGGTA
Found at i:37549642 original size:81 final size:81
Alignment explanation
Indices: 37549402--37549660 Score: 326
Period size: 81 Copynumber: 3.2 Consensus size: 81
37549392 GAATTACTCT
* *
37549402 TACAGGGTAAAATGACCGAATTACCCCCATAAGGTAAAATGACTGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAA
37549467 ATGATCGAATTAT-CCCC
66 ATGATCG--TTATACCCC
* *
37549484 T-CAGGGTAAAATGACCGAATTACCCCCACAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAA
**
37549548 ATGATCGAAATACCCC
66 ATGATCGTTATACCCC
* * * * * * *
37549564 TATAGGGAAAAATGACCAAAATAACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAA
37549629 ATGA-CTGTTATACCCC
66 ATGATC-GTTATACCCC
* * *
37549645 TAGAAGATAAAATGAC
1 TACAGGGTAAAATGAC
37549661 TATTATGGCA
Statistics
Matches: 153, Mismatches: 21, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
79 2 0.01
80 6 0.04
81 144 0.94
82 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.19
Consensus pattern (81 bp):
TACAGGGTAAAATGACCGAATTACCCCCATAGGGTAAAATGACCGAATTACCCCCACAGGGTAAA
ATGATCGTTATACCCC
Found at i:37549656 original size:54 final size:52
Alignment explanation
Indices: 37549403--37549660 Score: 234
Period size: 54 Copynumber: 4.8 Consensus size: 52
37549393 AATTACTCTT
* *
37549403 ACAGGGTAAAATGACCGAATTACCCCCATA-AGGTAAAATGACTGAATTACCCCC
1 ACAGGGTAAAATGACCGAA-TA-CCCC-TAGAGGTAAAATGACCGAAATACCCCC
* *
37549457 ACAGGGTAAAATGATCGAATTATCCCCTCAG-GGTAAAATGACCGAATTACCCCC
1 ACAGGGTAAAATGACCGAA-TA-CCCCT-AGAGGTAAAATGACCGAAATACCCCC
* * * * *
37549511 ACAGGATAAAATGACCGAATTACCCCCACAGGGTAAAATGATCGAAATACCCCT
1 ACAGGGTAAAATGACCGAA-TACCCCTAGA-GGTAAAATGACCGAAATACCCCC
* * *
37549565 ATAGGGAAAAATGACCAAAATAACCCCATAG-GGTAAAATGACCGAAATACCCCC
1 ACAGGGTAAAATGACC-GAAT-ACCCC-TAGAGGTAAAATGACCGAAATACCCCC
* * * *
37549619 ATAGGGTAAAATGACTGTTATACCCCTAGAAGATAAAATGAC
1 ACAGGGTAAAATGACCG-AATACCCCTAG-AGGTAAAATGAC
37549661 TATTATGGCA
Statistics
Matches: 171, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
52 4 0.02
53 10 0.06
54 149 0.87
55 7 0.04
56 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.18
Consensus pattern (52 bp):
ACAGGGTAAAATGACCGAATACCCCTAGAGGTAAAATGACCGAAATACCCCC
Found at i:37559074 original size:4 final size:4
Alignment explanation
Indices: 37559065--37559090 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
37559055 TGTTATTATT
37559065 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
37559091 CCTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:37566439 original size:40 final size:40
Alignment explanation
Indices: 37566384--37566626 Score: 434
Period size: 40 Copynumber: 6.1 Consensus size: 40
37566374 GAGCATTGGA
37566384 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
37566424 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
37566464 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
37566504 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
37566544 ATATATCCGGGCTATGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
37566584 ATATATCCGGGCTAAGACCCGAAGGCAATTATGC-AGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
37566623 ATAT
1 ATAT
37566627 GTCGGGTTGA
Statistics
Matches: 194, Mismatches: 9, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 9 0.05
40 185 0.95
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:37574993 original size:40 final size:40
Alignment explanation
Indices: 37574938--37575204 Score: 493
Period size: 40 Copynumber: 6.7 Consensus size: 40
37574928 TGAGCATTGG
37574938 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
37574978 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
37575018 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
37575058 GATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
37575097 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
37575137 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
37575177 GATATGTCCGGG-TAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
37575205 ATGTGTTTGC
Statistics
Matches: 221, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
39 55 0.25
40 166 0.75
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:37575071 original size:80 final size:80
Alignment explanation
Indices: 37574938--37575204 Score: 493
Period size: 79 Copynumber: 3.4 Consensus size: 80
37574928 TGAGCATTGG
37574938 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
37575003 GCAATTATGCGAGTT
66 GCAATTATGCGAGTT
37575018 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCT-AGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
37575082 GCAATTATGCGAGTT
66 GCAATTATGCGAGTT
* *
37575097 GATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
37575162 GCAATTATGCGAGTT
66 GCAATTATGCGAGTT
*
37575177 GATATGTCCGGG-TAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
37575205 ATGTGTTTGC
Statistics
Matches: 182, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
79 92 0.51
80 90 0.49
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (80 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
GCAATTATGCGAGTT
Found at i:37575164 original size:119 final size:120
Alignment explanation
Indices: 37574938--37575204 Score: 493
Period size: 119 Copynumber: 2.2 Consensus size: 120
37574928 TGAGCATTGG
37574938 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
*
37575003 GCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
37575058 GATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAG
1 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
37575122 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
37575177 GATATGTCCGGG-TAAGACCCGAAGGCAA
1 GATATATCCGGGCTAAGACCCGAAGGCAA
37575205 ATGTGTTTGC
Statistics
Matches: 143, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
118 1 0.01
119 128 0.90
120 14 0.10
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (120 bp):
GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAG
GCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:37598228 original size:132 final size:132
Alignment explanation
Indices: 37597242--37598186 Score: 1602
Period size: 132 Copynumber: 7.2 Consensus size: 132
37597232 AGGTCGAAGA
* * * *
37597242 CACCAAGCCTTGTCTCCTTGAGCAGCAGCAGAGTAGGTTGAAAATTGTAGACCTTATCTCCTTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* * *
37597307 GCAGTAGTGGAGCAGATCGAAGACAGAAAATCTTATCTTTCCTAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37597372 GC
131 GC
*
37597374 CACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
*
37597439 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37597504 GC
131 GC
*
37597506 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
*
37597571 GCAGTAGTGGAGCAGATCGAAGACGGAAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
*
37597636 GT
131 GC
* * * * *
37597638 CACCAAGCCTTATCTCCCTGAGCAGCAGTGTAGTGGGTTGAAAATGGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* ** *
37597703 GCAGTAGTGGAGCAGATCAAAGATAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAC
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37597768 GC
131 GC
*
37597770 AACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* * *
37597835 GCAGTAGTGGAGCAGATCGAAGATGGCAACTCTTATCTTTCCAAGGTAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37597900 GC
131 GC
*
37597902 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* *
37597967 GCAGTAGTGGAGCAGATCGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAACAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37598032 GC
131 GC
* *
37598034 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGTAGATCTTATTTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
*
37598099 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
37598164 GC
131 GC
*
37598166 CACCAAGCCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
37598187 AGTTGCAGTG
Statistics
Matches: 763, Mismatches: 50, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 763 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:37598268 original size:44 final size:44
Alignment explanation
Indices: 37598174--37598282 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 44
37598164 GCCACCAAGC
* * *
37598174 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGTCGATAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAAGTTAAAGACCATAAT
* * *
37598218 CCTATCTCCCTGAAGTTGCAGTAGAGC-GGATTAAA-ACCTTAGAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAAG-TTAAAGACCATA-AT
*
37598262 CTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAG
37598283 AGAATAGATC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 4 0.07
44 51 0.93
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAAGTTAAAGACCATAAT
Found at i:37603836 original size:27 final size:27
Alignment explanation
Indices: 37603805--37603982 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
37603795 TAAATTGTAC
37603805 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37603832 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37603858 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37603886 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
37603914 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37603941 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37603968 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37603983 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37603919 original size:82 final size:81
Alignment explanation
Indices: 37603806--37603961 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
37603796 AAATTGTACA
*
37603806 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
37603870 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37603887 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
37603952 TGCGAGTTGA
65 TGCGAATTGA
37603962 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37603973 original size:82 final size:81
Alignment explanation
Indices: 37603802--37603982 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
37603792 GATTAAATTG
*
37603802 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
37603867 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37603883 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
37603947 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37603965 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37603983 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37611889 original size:27 final size:27
Alignment explanation
Indices: 37611858--37612035 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
37611848 TAAATTGTAC
37611858 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37611885 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37611911 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37611939 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
37611967 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37611994 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37612021 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37612036 GACTCATATA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37611972 original size:82 final size:81
Alignment explanation
Indices: 37611859--37612014 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
37611849 AAATTGTACA
*
37611859 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
37611923 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37611940 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
37612005 TGCGAGTTGA
65 TGCGAATTGA
37612015 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37612026 original size:82 final size:81
Alignment explanation
Indices: 37611855--37612035 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
37611845 GATTAAATTG
*
37611855 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
37611920 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37611936 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
37612000 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37612018 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37612036 GACTCATATA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37615124 original size:42 final size:42
Alignment explanation
Indices: 37615019--37615228 Score: 257
Period size: 42 Copynumber: 5.0 Consensus size: 42
37615009 GCTTACAGAA
* *
37615019 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGGTAAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* *
37615061 AAATAAACGCTGCTAAAGATCATGTTCTTTAGCGGCACTTAGG
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
37615104 AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* * *
37615146 AAGAAAACGCCGCTAAA-AGTAATCTTCTATAGCGGCGCTT-GG
1 AA-AAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAGG
*
37615188 TCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 -AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
37615229 TTTCACAAAC
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
41 1 0.01
42 77 0.52
43 70 0.47
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
Found at i:37615162 original size:85 final size:85
Alignment explanation
Indices: 37615019--37615228 Score: 259
Period size: 85 Copynumber: 2.5 Consensus size: 85
37615009 GCTTACAGAA
* * * *
37615019 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGGTAAGGAAATAAACGCTGCT-AAAGATCA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAATAAACGCCGCTAAAAG-TAA
* *
37615083 TGTTCTTTAGCGGCACTTAGG-
65 TCTTCTATAGCGGCACTT-GGT
*
37615104 AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTAGGAAGA-AAACGCCGCTAAAAGTAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA-ATAAACGCCGCTAAAAGTAA
*
37615168 TCTTCTATAGCGGCGCTTGGT
65 TCTTCTATAGCGGCACTTGGT
*
37615189 CAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
37615229 TTTCACAAAC
Statistics
Matches: 110, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
84 4 0.04
85 101 0.92
86 5 0.05
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (85 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAATAAACGCCGCTAAAAGTAAT
CTTCTATAGCGGCACTTGGT
Found at i:37615697 original size:21 final size:21
Alignment explanation
Indices: 37615673--37615741 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
37615663 GCTTCTATCG
* *
37615673 CTGCTTCTCTTACTGCGGCCT
1 CTGCTTCTCTCACTGCAGCCT
* *
37615694 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCACTGCAGCCT
* *
37615715 CTGCTTCCCTCACTGCCGCCT
1 CTGCTTCTCTCACTGCAGCCT
37615736 CTGCTT
1 CTGCTT
37615742 TAAGTTGCTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.04, C:0.42, G:0.17, T:0.36
Consensus pattern (21 bp):
CTGCTTCTCTCACTGCAGCCT
Found at i:37620803 original size:25 final size:25
Alignment explanation
Indices: 37620772--37621055 Score: 128
Period size: 25 Copynumber: 10.6 Consensus size: 25
37620762 ATTTTTCTCA
37620772 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
37620797 ATGTAAGTTATGTA-TATAGTATAAAAGAT
1 ATGTAAGTTATGTATTA-AG--T-AAA-TT
* *
37620826 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
**
37620851 ATGTAAGTTATGTAGGTTATTA-TAAGCT
1 ATGTAAGTTATGTA--TTA--AGTAAATT
37620879 ATGTAAGTTATTATGTAAGTTAAGATATAATAT
1 ATGTAAG---TTATGT-A-TTAAG-TA-AAT-T
* *
37620912 ATGT-TGATTATATATTAAGTAAATT
1 ATGTAAG-TTATGTATTAAGTAAATT
* * * *
37620937 ATGTAAGTTATGGAGTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* **
37620962 ATATAAGTTATGTAAGTTATA-TAAGCT
1 ATGTAAGTTATGT-A-TTA-AGTAAATT
37620989 ATGTAAGTTAT-TATGTAAGTAATGTATT
1 ATGTAAGTTATGTAT-TAAGTAA---ATT
** * *
37621017 AAATAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
37621042 ATATAAGCTATGTA
1 ATGTAAGTTATGTA
37621056 CCATTTATTA
Statistics
Matches: 201, Mismatches: 30, Indels: 56
0.70 0.10 0.20
Matches are distributed among these distances:
24 4 0.02
25 80 0.40
26 8 0.04
27 24 0.12
28 36 0.18
29 21 0.10
30 8 0.04
31 12 0.06
32 3 0.01
33 5 0.02
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:37620807 original size:9 final size:9
Alignment explanation
Indices: 37620772--37621118 Score: 168
Period size: 9 Copynumber: 38.6 Consensus size: 9
37620762 ATTTTTCTCA
37620772 ATGTAAGTT
1 ATGTAAGTT
37620781 ATGT-A-TT
1 ATGTAAGTT
* *
37620788 AAGTAAATT
1 ATGTAAGTT
37620797 ATGTAAGTT
1 ATGTAAGTT
37620806 ATGTATA-TAGT
1 ATGTA-AGT--T
** *
37620817 ATAAAAGAT
1 ATGTAAGTT
37620826 ATGTAAGTT
1 ATGTAAGTT
37620835 ATGT-A-TT
1 ATGTAAGTT
37620842 ATGTAAGTT
1 ATGTAAGTT
37620851 ATGTAAGTT
1 ATGTAAGTT
*
37620860 ATGTAGGTT
1 ATGTAAGTT
* *
37620869 ATTATAAGCT
1 A-TGTAAGTT
37620879 ATGTAAGTTATT
1 ATGTAAG---TT
37620891 ATGTAAGTT
1 ATGTAAGTT
* *
37620900 AAGATATAATAT
1 ATG-TA-AGT-T
*
37620912 ATGT-TGATT
1 ATGTAAG-TT
*
37620921 ATAT-A-TT
1 ATGTAAGTT
* *
37620928 AAGTAAATT
1 ATGTAAGTT
37620937 ATGTAAGTT
1 ATGTAAGTT
*
37620946 ATG-GAG-T
1 ATGTAAGTT
37620953 ATGTAAGTT
1 ATGTAAGTT
*
37620962 ATATAAGTT
1 ATGTAAGTT
37620971 ATGTAAGTT
1 ATGTAAGTT
* *
37620980 ATATAAGCT
1 ATGTAAGTT
37620989 ATGTAAGTTATT
1 ATGTAAG---TT
*
37621001 ATGTAAGTA
1 ATGTAAGTT
37621010 ATGT-A-TT
1 ATGTAAGTT
**
37621017 AAATAAGTT
1 ATGTAAGTT
37621026 ATGT-A-TT
1 ATGTAAGTT
37621033 ATGTAAGTT
1 ATGTAAGTT
* *
37621042 ATATAAGCT
1 ATGTAAGTT
*
37621051 ATGTACCATTT
1 ATGTA--AGTT
37621062 AT-TAAGTT
1 ATGTAAGTT
*
37621070 ATGTATG-T
1 ATGTAAGTT
* *
37621078 ATGTGACTT
1 ATGTAAGTT
*
37621087 TTGTAAGTT
1 ATGTAAGTT
*
37621096 ATGTGAGTT
1 ATGTAAGTT
*
37621105 ATGTAAATT
1 ATGTAAGTT
37621114 ATGTA
1 ATGTA
37621119 TTAAATTAAA
Statistics
Matches: 250, Mismatches: 57, Indels: 62
0.68 0.15 0.17
Matches are distributed among these distances:
7 28 0.11
8 23 0.09
9 156 0.62
10 13 0.05
11 11 0.04
12 19 0.08
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.44
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:37620846 original size:16 final size:16
Alignment explanation
Indices: 37620825--37621043 Score: 102
Period size: 16 Copynumber: 13.8 Consensus size: 16
37620815 GTATAAAAGA
37620825 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
37620841 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
37620859 TATGTAGGTTAT-TA-
1 TATGTAAGTTATGTAT
* * *
37620873 TAAGCTATG-TAAGTTAT
1 TATG-TAAGTTATG-TAT
*
37620890 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
37620907 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
37620923 ATAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
* *
37620936 TATGTAAGTTATGGAG
1 TATGTAAGTTATGTAT
*
37620952 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
37620970 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
37620988 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
37621000 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
**
37621016 TAAATAAGTTATGTAT
1 TATGTAAGTTATGTAT
37621032 TATGTAAGTTAT
1 TATGTAAGTTAT
37621044 ATAAGCTATG
Statistics
Matches: 158, Mismatches: 26, Indels: 38
0.71 0.12 0.17
Matches are distributed among these distances:
12 11 0.07
13 7 0.04
14 9 0.06
15 6 0.04
16 65 0.41
17 22 0.14
18 38 0.24
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:37620881 original size:19 final size:19
Alignment explanation
Indices: 37620841--37620892 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
37620831 AGTTATGTAT
* *
37620841 TATGTAAGTTA-TGTAAGT
1 TATGTAAGTTATTATAAGC
*
37620859 TATGTAGGTTATTATAAGC
1 TATGTAAGTTATTATAAGC
37620878 TATGTAAGTTATTAT
1 TATGTAAGTTATTAT
37620893 GTAAGTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (19 bp):
TATGTAAGTTATTATAAGC
Found at i:37623813 original size:115 final size:115
Alignment explanation
Indices: 37623600--37623833 Score: 387
Period size: 115 Copynumber: 2.0 Consensus size: 115
37623590 AATATTTCTA
*
37623600 GCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAGG
1 GCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAGG
* * * *
37623665 AAATTTGTGGCGTTTCTTCATAAAACGCTGGTAATATATCACTTTTAGCG
66 AAATTTGCGGCGTTTCTTCACAAAACGCGGGTAATATATCACCTTTAGCG
* * * *
37623715 GCGTATTTCAAATGTGCCACTAAAAGAAAATAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
1 GCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAGG
37623780 AAATTTGCGGCGTTTCTTCACAAAACGCGGGTAATATATCACCTTTAGCG
66 AAATTTGCGGCGTTTCTTCACAAAACGCGGGTAATATATCACCTTTAGCG
37623830 GCGT
1 GCGT
37623834 TTTTTCTGAA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 110 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (115 bp):
GCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAGG
AAATTTGCGGCGTTTCTTCACAAAACGCGGGTAATATATCACCTTTAGCG
Found at i:37624325 original size:7 final size:6
Alignment explanation
Indices: 37624286--37624367 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 6
37624276 CAATATATCA
* *
37624286 TAAACC TTAAATCA TAAATCC TAAACCC CAAACC TAAAACTC TAAACTC
1 TAAACC -TAAA-CC TAAA-CC TAAA-CC TAAACC T-AAAC-C TAAAC-C
37624335 TAAACC GTAAACCC TAAACC GTAAACC TAAACC
1 TAAACC -TAAA-CC TAAACC -TAAACC TAAACC
37624368 ATATTTTTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
6 11 0.17
7 48 0.75
8 5 0.08
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (6 bp):
TAAACC
Found at i:37624330 original size:21 final size:21
Alignment explanation
Indices: 37624305--37624365 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
37624295 AATCATAAAT
*
37624305 CCTAAACCCCAAACCTAAAAC
1 CCTAAACCCTAAACCTAAAAC
* *
37624326 TCTAAACTCTAAACCGT-AAAC
1 CCTAAACCCTAAACC-TAAAAC
*
37624347 CCTAAACCGTAAACCTAAA
1 CCTAAACCCTAAACCTAAA
37624366 CCATATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.46, C:0.34, G:0.03, T:0.16
Consensus pattern (21 bp):
CCTAAACCCTAAACCTAAAAC
Found at i:37624339 original size:14 final size:13
Alignment explanation
Indices: 37624286--37624367 Score: 67
Period size: 14 Copynumber: 5.9 Consensus size: 13
37624276 CAATATATCA
* *
37624286 TAAACCTTAAATCA
1 TAAACC-TAAACCG
*
37624300 TAAATCCTAAACCC
1 TAAA-CCTAAACCG
*
37624314 CAAACCTAAAACTC-
1 TAAACCT-AAAC-CG
37624328 TAAACTCTAAACCG
1 TAAAC-CTAAACCG
37624342 TAAACCCTAAACCG
1 TAAA-CCTAAACCG
37624356 TAAACCTAAACC
1 TAAACCTAAACC
37624368 ATATTTTTTG
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
13 12 0.21
14 40 0.69
15 6 0.10
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (13 bp):
TAAACCTAAACCG
Found at i:37624533 original size:20 final size:21
Alignment explanation
Indices: 37624495--37624544 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
37624485 TCTTCAATTT
37624495 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAACCCTAAAACC
* *
37624515 CTAAACTCAAA-CCTTAAACC
1 CCAAACTCAAACCCTAAAACC
37624535 CCAAACTCAA
1 CCAAACTCAA
37624545 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (21 bp):
CCAAACTCAAACCCTAAAACC
Found at i:37624727 original size:7 final size:7
Alignment explanation
Indices: 37624694--37624756 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
37624684 TGCATTGAAA
37624694 CCCTAA-
1 CCCTAAC
*
37624700 CCGTAAC
1 CCCTAAC
37624707 CCCTAAATC
1 CCCT-AA-C
37624716 CCCTAAC
1 CCCTAAC
37624723 CCCTAAC
1 CCCTAAC
*
37624730 CCCTAAA
1 CCCTAAC
* *
37624737 GCATAAC
1 CCCTAAC
*
37624744 ACCTAAC
1 CCCTAAC
37624751 CCCTAA
1 CCCTAA
37624757 ACTTTAAATC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
6 5 0.11
7 31 0.69
8 4 0.09
9 5 0.11
ACGTcount: A:0.35, C:0.46, G:0.03, T:0.16
Consensus pattern (7 bp):
CCCTAAC
Found at i:37625474 original size:72 final size:72
Alignment explanation
Indices: 37625354--37625506 Score: 173
Period size: 72 Copynumber: 2.1 Consensus size: 72
37625344 CAATAGCTGA
* * * * * *
37625354 GAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCCCCAAAAATGCCGCTAAAT-CCCA
1 GAAAACGGCACCGTTTGGCTTAGGATTATTAACGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
37625418 AAAACTAC
66 AAAACT-C
* * * ** *
37625426 GGAAACGGCACCGTTTGGCTTAGGATTATTAATGGCGCTTGATTAAAAACGTCGCTAAATCCCCA
1 GAAAACGGCACCGTTTGGCTTAGGATTATTAACGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
*
37625491 AAAGCTC
66 AAAACTC
37625498 GAAAACGGC
1 GAAAACGGC
37625507 GTCGTTGGGC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
72 57 0.86
73 9 0.14
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (72 bp):
GAAAACGGCACCGTTTGGCTTAGGATTATTAACGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
AAAACTC
Found at i:37627602 original size:18 final size:19
Alignment explanation
Indices: 37627579--37627629 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
37627569 TTGTTATTAC
37627579 ATACATATTTTA-AAACAT
1 ATACATATTTTATAAACAT
* *
37627597 ATACATA-TATATATACAT
1 ATACATATTTTATAAACAT
*
37627615 ATATATATTTTATAA
1 ATACATATTTTATAA
37627630 TCTATGTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.69
19 5 0.19
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (19 bp):
ATACATATTTTATAAACAT
Found at i:37627610 original size:12 final size:12
Alignment explanation
Indices: 37627595--37627622 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
37627585 ATTTTAAAAC
37627595 ATATACATATAT
1 ATATACATATAT
37627607 ATATACATATAT
1 ATATACATATAT
37627619 ATAT
1 ATAT
37627623 TTTATAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATACATATAT
Found at i:37627954 original size:22 final size:22
Alignment explanation
Indices: 37627914--37627955 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37627904 TTTATTGATT
37627914 TCTTTTTATTATATATTTTCCA
1 TCTTTTTATTATATATTTTCCA
*
37627936 TCTTATTTATT-TATCTTTTC
1 TCTT-TTTATTATATATTTTC
37627956 TTATTTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (22 bp):
TCTTTTTATTATATATTTTCCA
Found at i:37631234 original size:9 final size:9
Alignment explanation
Indices: 37631220--37631267 Score: 78
Period size: 9 Copynumber: 5.3 Consensus size: 9
37631210 GTTCAGACTA
37631220 AAAAAAATC
1 AAAAAAATC
37631229 AAAAAAATC
1 AAAAAAATC
37631238 AAAAAAATC
1 AAAAAAATC
* *
37631247 AAAAAATTA
1 AAAAAAATC
37631256 AAAAAAATC
1 AAAAAAATC
37631265 AAA
1 AAA
37631268 GTAAAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATC
Found at i:37631293 original size:18 final size:19
Alignment explanation
Indices: 37631265--37631312 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
37631255 AAAAAAAATC
*
37631265 AAAGTAAAAAATAG-GAGAA
1 AAAG-AAAAAAAAGAGAGAA
*
37631284 AAAGAAAAAAAAGAAGAGGA
1 AAAGAAAAAAAAG-AGAGAA
37631304 AAAGAAAAA
1 AAAGAAAAA
37631313 TGAGAGGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 8 0.32
19 4 0.16
20 13 0.52
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (19 bp):
AAAGAAAAAAAAGAGAGAA
Found at i:37632156 original size:16 final size:17
Alignment explanation
Indices: 37632135--37632170 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
37632125 AAAATGAATG
37632135 AAAAAATGAAAAA-TAA
1 AAAAAATGAAAAAGTAA
37632151 AAAAAATGAAAAAGTAA
1 AAAAAATGAAAAAGTAA
37632168 AAA
1 AAA
37632171 TGGAGAGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (17 bp):
AAAAAATGAAAAAGTAA
Found at i:37633524 original size:88 final size:88
Alignment explanation
Indices: 37633375--37635286 Score: 3171
Period size: 88 Copynumber: 21.7 Consensus size: 88
37633365 AACAGATCAG
* ** * *
37633375 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGTGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633440 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * * * *
37633463 TGAAGATAAAAGATCTTGCATTCCTGCATTGACAGTGAAGCAGGTCGAAGACATAGACCTTGTCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37633528 CTCTCGGTTGTTATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
37633551 TGAAGACAAAAGATCTTGCCTTCCGGTATTGATAGCGAAGCAGATCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633616 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
37633639 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACCCAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633704 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
37633727 TGAAGACAAAAGATCTTGCCTTCCTATATTGACAGCGAAGCAGATCGAATACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633792 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
37633815 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633880 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
37633903 TGAAGACAAAAGATCTTGCCTTTCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37633968 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
37633991 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC-ATAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGA-AGACACAAACCTTGCC
*
37634055 TCTCTCGGTCGTGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* *
37634079 TGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
**
37634144 CTCTCGGTTGTGATGTTGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
37634167 TGAAGACAAAAGATCTTGCCTTCCTGTATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634232 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
37634255 TGAAGATAAAAGATCTTGCCTTCCTGTATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37634320 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
37634343 TGAAGATAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634408 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
37634431 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634496 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
37634519 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634584 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
37634607 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37634672 CTCTCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
37634695 TGAAAACAAAAGATCTTGCCTTCCTGTATTGACAGCGATGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634760 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
37634783 TCAAAAC-AAAGATCTTGCCTTCCTGTATTGACAACGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37634847 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
37634870 TGAAGACAAAAGATCTTGCCTTCCTATATTGACAGCGGAGCAGGTTGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37634935 TTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* ** *
37634958 TGAAGATAAAAGATCTTGCCTTCCTACATTGATAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37635023 CTCTCGGTTGTGATGGAGTTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
37635046 TGAAGATAAATGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
37635111 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
37635134 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37635199 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
37635222 TGAGGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAAACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
37635287 TCTTGTACTA
Statistics
Matches: 1725, Mismatches: 96, Indels: 6
0.94 0.05 0.00
Matches are distributed among these distances:
87 84 0.05
88 1640 0.95
89 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (88 bp):
TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
CTCTCGGTTGTGATGGAGCTGGT
Found at i:37633557 original size:43 final size:43
Alignment explanation
Indices: 37633431--37635242 Score: 684
Period size: 44 Copynumber: 41.2 Consensus size: 43
37633421 GAAGAAACAA
*
37633431 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGA-CAAAG
* * * ** * * * *
37633475 ATCTTGCAT-TC-CTGCATTGACAGTGAAGCAGGTCGAAGACATAG
1 ACCTTGCCTCTCTC-G-GTTGTGA-TGGAGCTGGTTGAAGACAAAG
* *
37633519 ACCTTGTCTCTCTCGGTTGTTATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * **
37633563 ATCTTGCCT-TC-CGGTAT-TGATAGCGAAGCAGATCAAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGAT-G-G-AGCTGGTTGAAGACA-AAG
37633607 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * * * *
37633651 ATCTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACCCAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGA-CAAAG
*
37633695 ACCTTACCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* ** * * * * *
37633739 ATCTTGCCT-TC-CTATAT-TGACAGCGAAGCAGATCGAATACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37633783 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * * *
37633827 ATCTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37633871 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * *
37633915 ATCTTGCCT-T-TCTGTAT-TGACAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37633959 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* ** * * * *
37634003 ATCTTGCCT-TC-CTGCAT-TGACAGCGAAGC-AGATCATAGACACAA-
1 ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGA-AGACA-AAG
*
37634047 ACCTTGCCTCTCTCGGTCGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * ** * * *
37634091 ATCTTACCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACA-AAG
**
37634135 ACCTTGCCTCTCTCGGTTGTGATGTTGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * *
37634179 ATCTTGCCT-TC-CTGTAT-TGATAGCGAAGCAGATCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGAT-G-G-AGCTGGTTGAAGACA-AAG
*
37634223 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGA-CAAAG
* * * * * * *
37634267 ATCTTGCCT-TC-CTGTAT-TAACAGCGAAGCAGATCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
* * *
37634311 ACCTTACCTCTCTCGGTTGTGATAGAGCTGGTTGAAGATAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGA-CAAAG
* * * * * *
37634355 ATCTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37634399 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * * *
37634443 ATCTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37634487 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* ** * * *
37634531 ATCTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACA-AAG
37634575 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * *
37634619 ATCTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACA-AAG
* *
37634663 ACCTTGCCTCTCTCGGTTGTGATGGAGCTAGTTGAAAACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* * * * *
37634707 ATCTTGCCT-TC-CTGTAT-TGACAGCGATGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTGA-TG-GA-GCTGGTTGAAGACA-AAG
* *
37634751 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTCAAAACAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAG
* * * * * *
37634794 ATCTTGCCT-TC-CTGTAT-TGACAACGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTCGGT-TGTG---ATGGAGCTGGTTGAAGACA-AAG
37634838 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC-AAAG
* *** ** * *
37634882 ATCTTGCCT-TCCTATATTGACAGCGGAGCAGGTTGAAGACACAA-
1 ACCTTGCCTCT-CTCGGTTGTGA-TGGAGCTGGTTGAAGACA-AAG
* *
37634926 ACCTTGCCTTTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGA-CAAAG
* * * *
37634970 ATCTTGCCT-TCCTAC--AT-TGATAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCT-CT-CGGTTGTGAT-G-G-AGCTGGTTGAAGACA-AAG
* *
37635014 ACCTTGCCTCTCTCGGTTGTGATGGAGTTGGTTGAAGATAAATG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAA-G
* ** * * **
37635058 ATCTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCAAAGACACAA-
1 ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACA-AAG
* *
37635102 ACCTTGCCTCTCTCGGTTGTGATAGAGCTGGTTGAAGATAAAAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGA-CAAAG
* ** * * *
37635146 ATCTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-
1 ACCTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACA-AAG
*
37635190 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAGGACAATAG
1 ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAA-AG
*
37635234 ATCTTGCCT
1 ACCTTGCCT
37635243 TCCTGCATTG
Statistics
Matches: 1283, Mismatches: 290, Indels: 390
0.65 0.15 0.20
Matches are distributed among these distances:
41 5 0.00
42 101 0.08
43 334 0.26
44 424 0.33
45 318 0.25
46 101 0.08
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (43 bp):
ACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAG
Found at i:37635380 original size:46 final size:46
Alignment explanation
Indices: 37635313--37635472 Score: 239
Period size: 46 Copynumber: 3.5 Consensus size: 46
37635303 GAGCAGACTA
* * *
37635313 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
1 AAGATAGTAAATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCG
*
37635359 AAGATAGTAAATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATTG
1 AAGATAGTAAATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * * *
37635405 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
1 AAGATAGTAAATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCG
*
37635451 AAGATAGTGAATCTTATCTTCC
1 AAGATAGTAAATCTTATCTTCC
37635473 CATTACAGTG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 102 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (46 bp):
AAGATAGTAAATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCG
Found at i:37635596 original size:132 final size:132
Alignment explanation
Indices: 37635445--37635847 Score: 628
Period size: 132 Copynumber: 3.1 Consensus size: 132
37635435 GCAGCAGAGT
* * * *
37635445 AGATCGAAGATAGTGAATCTTATCTTCCCATTACAGTGGAGAAGCGGATTTAAGCCATTAGTCTT
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
* * *
37635510 ATCACCTTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAACCTAAGCAGTAGTGGA
66 ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
37635575 GC
131 GC
*
37635577 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
* *
37635642 ATCACCCTAAACAGTAGTGAAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
66 ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
37635707 GC
131 GC
*
37635709 AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGG-TTTAAGCCATTAGTCC
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC-GGATTTAAGCCATTAGTCC
* ** * ** *
37635773 TATCACCCTAAGCAGTAGTGGGGTAGGTCAAAGACTATAGATTCTGTCCCCCTAAGCAGTAGTGG
65 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
37635838 AGC
130 AGC
37635841 AGATCAA
1 AGATCAA
37635848 CAATAACGAA
Statistics
Matches: 248, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 247 1.00
133 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
GC
Found at i:37635718 original size:44 final size:44
Alignment explanation
Indices: 37635509--37635719 Score: 126
Period size: 44 Copynumber: 4.8 Consensus size: 44
37635499 CCATTAGTCT
* * * *
37635509 TATCACCTTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* * ** ** *
37635553 TGTCAACCTAAGCAGTAGTGGAGCAGATCAAAGA-TGGTGAATC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* * * * * * *
37635596 TTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TCC
1 -TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTC
* * * *
37635641 TATCACCCTAAACAGTAGTGAAGTAGGTTGAAGATTGCAGATTC
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
* *
37635685 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
37635720 GGTGAATCTT
Statistics
Matches: 121, Mismatches: 36, Indels: 20
0.68 0.20 0.11
Matches are distributed among these distances:
41 3 0.02
43 28 0.23
44 68 0.56
45 19 0.16
46 1 0.01
47 1 0.01
48 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTC
Found at i:37637413 original size:6 final size:6
Alignment explanation
Indices: 37637402--37637431 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
37637392 ATATTTTAAA
*
37637402 ACATAT ACATAT ACATAT ACATAT ATATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT
37637432 TTTATAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (6 bp):
ACATAT
Found at i:37637768 original size:22 final size:22
Alignment explanation
Indices: 37637728--37637769 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37637718 TTTATTGATT
37637728 TCTTTTTATTATATATTTTCCA
1 TCTTTTTATTATATATTTTCCA
*
37637750 TCTTATTTATT-TATCTTTTC
1 TCTT-TTTATTATATATTTTC
37637770 TTATTTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (22 bp):
TCTTTTTATTATATATTTTCCA
Found at i:37639168 original size:3 final size:3
Alignment explanation
Indices: 37639160--37639196 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
37639150 ATTAATTACC
37639160 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
37639197 TTTTGTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:37639598 original size:20 final size:20
Alignment explanation
Indices: 37639575--37639644 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
37639565 AAAAATTAAA
37639575 AAATATTTTATTTAATTTTC
1 AAATATTTTATTTAATTTTC
*
37639595 AAATAATTTTAATATT--TTTTA
1 AAAT-ATTTT-AT-TTAATTTTC
37639616 AAATATTTT-TTTGAATTTTC
1 AAATATTTTATTT-AATTTTC
*
37639636 TAA-ATTTTA
1 AAATATTTTA
37639645 AATAAATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
17 2 0.05
18 1 0.03
19 5 0.12
20 15 0.38
21 13 0.32
22 2 0.05
23 2 0.05
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (20 bp):
AAATATTTTATTTAATTTTC
Found at i:37639640 original size:21 final size:20
Alignment explanation
Indices: 37639575--37639640 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 20
37639565 AAAAATTAAA
37639575 AAATATTTTATTTAATTTTC-
1 AAATATTTT-TTTAATTTTCT
* * *
37639595 AAATA-ATTTTAATATTTTTT
1 AAATATTTTTTTA-ATTTTCT
37639615 AAAATATTTTTTTGAATTTTCT
1 -AAATATTTTTTT-AATTTTCT
37639637 AAAT
1 AAAT
37639641 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
18 3 0.09
19 7 0.20
20 5 0.14
21 9 0.26
22 10 0.29
23 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (20 bp):
AAATATTTTTTTAATTTTCT
Found at i:37643983 original size:6 final size:6
Alignment explanation
Indices: 37643968--37644001 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
37643958 CTTTTAGTGA
*
37643968 GAATGT GAATGC GAATGT GAATGT GAATGT GAAT
1 GAATGT GAATGT GAATGT GAATGT GAATGT GAAT
37644002 ATGATAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (6 bp):
GAATGT
Found at i:37647772 original size:21 final size:20
Alignment explanation
Indices: 37647748--37647798 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
37647738 TATTTGGAGA
37647748 GATTTAAGGGGAGAATATTGG
1 GATTTAA-GGGAGAATATTGG
37647769 GATTT-AGGGAGAATATTGG
1 GATTTAAGGGAGAATATTGG
37647788 GATTT-AGGGAG
1 GATTTAAGGGAG
37647799 CTATATATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 24 0.80
20 1 0.03
21 5 0.17
ACGTcount: A:0.31, C:0.00, G:0.39, T:0.29
Consensus pattern (20 bp):
GATTTAAGGGAGAATATTGG
Found at i:37647780 original size:19 final size:19
Alignment explanation
Indices: 37647756--37647798 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
37647746 GAGATTTAAG
37647756 GGGAGAATATTGGGATTTA
1 GGGAGAATATTGGGATTTA
37647775 GGGAGAATATTGGGATTTA
1 GGGAGAATATTGGGATTTA
37647794 GGGAG
1 GGGAG
37647799 CTATATATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.42, T:0.28
Consensus pattern (19 bp):
GGGAGAATATTGGGATTTA
Found at i:37648931 original size:52 final size:52
Alignment explanation
Indices: 37648853--37649020 Score: 237
Period size: 52 Copynumber: 3.2 Consensus size: 52
37648843 AACACGTCAA
* *
37648853 GAAAGAAAGCCTGTGTAGTGTAATATGAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* *
37648905 GAAAGAAAGCTTGTGTGGTGTAATATGAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* * * * * *
37648957 GAAAGAAAGCCTATGTGGCGTAATATGGAAGAAAGCCTATGTGGCTTAACAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
*
37649009 GAAAGAGAGCCT
1 GAAAGAAAGCCT
37649021 ATATGGAAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.23
Consensus pattern (52 bp):
GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
Found at i:37649021 original size:26 final size:26
Alignment explanation
Indices: 37648853--37649022 Score: 214
Period size: 26 Copynumber: 6.5 Consensus size: 26
37648843 AACACGTCAA
* * *
37648853 GAAAGAAAGCCTGTGTAGTGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
*
37648879 GAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
37648905 GAAAGAAAGCTTGTGTGGTGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
37648931 GAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
37648957 GAAAGAAAGCCTATGTGGCGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
37648983 GGAAGAAAGCCTATGTGGCTTAACAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
*
37649009 GAAAGAGAGCCTAT
1 GAAAGAAAGCCTAT
37649023 ATGGAAAAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 128 1.00
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.24
Consensus pattern (26 bp):
GAAAGAAAGCCTATGTGGCGTAATAT
Found at i:37649034 original size:52 final size:52
Alignment explanation
Indices: 37648853--37649055 Score: 217
Period size: 52 Copynumber: 3.9 Consensus size: 52
37648843 AACACGTCAA
* * * *
37648853 GAAAGAAAGCCTGTGTAGTGTAATATGAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTATGTGGAGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* * * *
37648905 GAAAGAAAGCTTGTGTGGTGTAATATGAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTATGTGGAGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* * * * *
37648957 GAAAGAAAGCCTATGTGGCGTAATATGGAAGAAAGCCTATGTGGCTTAACAT
1 GAAAGAAAGCCTATGTGGAGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* * ** * * *
37649009 GAAAGAGAGCCTATATGGAAAAATATGGAAGGAATGCCTTTGTGGCA
1 GAAAGAAAGCCTATGTGGAGTAATAT-GAAAGAAAGCCTGTGTGGCA
37649056 AGCTCTGTAA
Statistics
Matches: 128, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
52 113 0.88
53 15 0.12
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (52 bp):
GAAAGAAAGCCTATGTGGAGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
Found at i:37649034 original size:78 final size:78
Alignment explanation
Indices: 37648874--37649054 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 78
37648864 TGTGTAGTGT
* * * *
37648874 AATATGAAAGAAAGCCTGTGTGGCGTAATATGAAAGAAAGCTTGTGTGGTGTAATATGAAAGAAA
1 AATATGAAAGAAAGCCTATGTGGCGTAATATGAAAGAAAGCCTATGTGGTGTAACATGAAAGAAA
* * *
37648939 GCCTGTGAGGCAT
66 GCCTATGAGGAAA
* *
37648952 AATATGAAAGAAAGCCTATGTGGCGTAATATGGAAGAAAGCCTATGTGGCT-TAACATGAAAGAG
1 AATATGAAAGAAAGCCTATGTGGCGTAATATGAAAGAAAGCCTATGTGG-TGTAACATGAAAGAA
37649016 AGCCTAT-ATGGAAA
65 AGCCTATGA-GGAAA
* * *
37649030 AATATGGAAGGAATGCCTTTGTGGC
1 AATAT-GAAAGAAAGCCTATGTGGC
37649055 AAGCTCTGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
78 70 0.80
79 17 0.19
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (78 bp):
AATATGAAAGAAAGCCTATGTGGCGTAATATGAAAGAAAGCCTATGTGGTGTAACATGAAAGAAA
GCCTATGAGGAAA
Found at i:37649088 original size:27 final size:26
Alignment explanation
Indices: 37649037--37649092 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
37649027 AAAAATATGG
* *
37649037 AAGGAATGCCTTTGTGGCAAGCTCTGT
1 AAGGAACGCATTTGTGGCAAGCTCT-T
37649064 AAGGAACGCATTTGTGGCACA-CTCTT
1 AAGGAACGCATTTGTGGCA-AGCTCTT
37649090 AAG
1 AAG
37649093 ATTCACCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
AAGGAACGCATTTGTGGCAAGCTCTT
Found at i:37651336 original size:20 final size:20
Alignment explanation
Indices: 37651311--37651349 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37651301 ACCCAATTAA
37651311 AAATTA-TTTTAAAGTGTTTT
1 AAATTACTTTTAAA-TGTTTT
37651331 AAATTACTTTTAAATGTTT
1 AAATTACTTTTAAATGTTT
37651350 ATAAGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (20 bp):
AAATTACTTTTAAATGTTTT
Found at i:37654762 original size:6 final size:6
Alignment explanation
Indices: 37654733--37654784 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
37654723 AATCAGAAAT
* *
37654733 AAATAA ACAA-AA AATATAAA AAATAA AAATAA AAACAA AAATAA AAACAA
1 AAATAA A-AATAA AA-AT-AA AAATAA AAATAA AAATAA AAATAA AAATAA
37654783 AA
1 AA
37654785 TTATTAAAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 1 0.03
6 30 0.77
7 4 0.10
8 4 0.10
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.12
Consensus pattern (6 bp):
AAATAA
Found at i:37654764 original size:13 final size:12
Alignment explanation
Indices: 37654733--37654784 Score: 59
Period size: 13 Copynumber: 4.1 Consensus size: 12
37654723 AATCAGAAAT
37654733 AAATAAACAAAAA
1 AAATAAA-AAAAA
*
37654746 ATATAAAAAATAA
1 AAATAAAAAA-AA
*
37654759 AAATAAAAACAA
1 AAATAAAAAAAA
37654771 AAATAAAAACAAA
1 AAATAAAAA-AAA
37654784 A
1 A
37654785 TTATTAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 14 0.42
13 19 0.58
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAATAAAAAAAA
Found at i:37654785 original size:11 final size:12
Alignment explanation
Indices: 37654733--37654784 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
37654723 AATCAGAAAT
37654733 AAATAAACAA-AA
1 AAATAAA-AACAA
*
37654745 AATATAAAAAATAA
1 AA-AT-AAAAACAA
37654759 AAATAAAAACAA
1 AAATAAAAACAA
37654771 AAATAAAAACAA
1 AAATAAAAACAA
37654783 AA
1 AA
37654785 TTATTAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
12 23 0.64
13 6 0.17
14 7 0.19
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAATAAAAACAA
Found at i:37655856 original size:17 final size:18
Alignment explanation
Indices: 37655829--37655862 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37655819 AAATTATTAT
37655829 CAATATTTTTTAAATTTA
1 CAATATTTTTTAAATTTA
37655847 CAAT-TTTTTTAAATTT
1 CAATATTTTTTAAATTT
37655863 TTTTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
CAATATTTTTTAAATTTA
Found at i:37658054 original size:69 final size:69
Alignment explanation
Indices: 37657968--37658107 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
37657958 ACTTGACATA
37657968 CTTATTGGACATCAAGGTGGATGAACAATTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
1 CTTATTGGACATCAAGGTGGATGAACAATTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
*
37658033 GTAG
66 ATAG
* * *
37658037 CTTATTGGACATCAAGGTGGATGAACAATTGTTTCGGGCCCTTGCTCAATATTGGAACCCTGCAT
1 CTTATTGGACATCAAGGTGGATGAACAATTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
37658102 ATAG
66 ATAG
37658106 CT
1 CT
37658108 GTTTCACTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (69 bp):
CTTATTGGACATCAAGGTGGATGAACAATTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
ATAG
Found at i:37663701 original size:12 final size:12
Alignment explanation
Indices: 37663672--37663702 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
37663662 TCATAAATTT
37663672 ATATATTCTTTG
1 ATATATTCTTTG
37663684 -TATATTCTTTG
1 ATATATTCTTTG
37663695 ATATATTC
1 ATATATTC
37663703 CCTCATAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.26, C:0.10, G:0.06, T:0.58
Consensus pattern (12 bp):
ATATATTCTTTG
Done.