Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 161 of 199
Found at i:47148091 original size:46 final size:46
Alignment explanation
Indices: 47148024--47148128 Score: 124
Period size: 46 Copynumber: 2.3 Consensus size: 46
47148014 ACATTTATAG
* *
47148024 AATACGTCACAAACGCCAAACAGAATACG-CTACACAAGCCAAACAA
1 AATACGCCACAAACGCCAAACAAAATACGCCT-CACAAGCCAAACAA
* * *
47148070 AATACGCCACACAA-GCCAAACAAAATATGCCTCACAAGGCAAACAG
1 AATACGCCACA-AACGCCAAACAAAATACGCCTCACAAGCCAAACAA
*
47148116 AATACTCCACAAA
1 AATACGCCACAAA
47148129 GGCAATATTG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
45 2 0.04
46 45 0.88
47 4 0.08
ACGTcount: A:0.50, C:0.30, G:0.10, T:0.10
Consensus pattern (46 bp):
AATACGCCACAAACGCCAAACAAAATACGCCTCACAAGCCAAACAA
Found at i:47149736 original size:2 final size:2
Alignment explanation
Indices: 47149729--47149777 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
47149719 GGAGAAAAGA
* * *
47149729 AG AG AG AG AG AA AG GG GG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
47149771 AG AG AG A
1 AG AG AG A
47149778 AGGGAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:47149741 original size:16 final size:16
Alignment explanation
Indices: 47149720--47149773 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
47149710 GTAGAGAATG
47149720 GAGAAAAGAAGAGAGA
1 GAGAAAAGAAGAGAGA
* **
47149736 GAGAAAGGGGGAGAGA
1 GAGAAAAGAAGAGAGA
*
47149752 GAGAGAGAGAGAGAGAGA
1 GAGA-AAAGA-AGAGAGA
47149770 GAGA
1 GAGA
47149774 GAGAAGGGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
16 17 0.59
17 2 0.07
18 10 0.34
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (16 bp):
GAGAAAAGAAGAGAGA
Found at i:47151518 original size:40 final size:40
Alignment explanation
Indices: 47151472--47151703 Score: 324
Period size: 40 Copynumber: 5.8 Consensus size: 40
47151462 TATAACCACA
* * * *
47151472 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* * *
47151512 CGCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* *
47151552 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
47151592 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
*
47151632 AGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
* *
47151672 AGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATA
47151704 TCATTCAAAT
Statistics
Matches: 179, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 175 0.98
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
Found at i:47159463 original size:27 final size:27
Alignment explanation
Indices: 47159432--47159582 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
47159422 TAAATTGTAC
47159432 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
47159459 TGCACTAAGTGTTCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47159485 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47159513 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47159541 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47159568 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47159583 GACTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 80 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47159495 original size:54 final size:55
Alignment explanation
Indices: 47159432--47159582 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 55
47159422 TAAATTGTAC
* *
47159432 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTTCGA-AATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * ** ** *
47159485 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
* * *
47159541 AGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
47159583 GACTCAATAT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 37 0.46
55 41 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGT
Found at i:47159573 original size:82 final size:81
Alignment explanation
Indices: 47159433--47159582 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 81
47159423 AAATTGTACA
* *
47159433 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTTCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
47159498 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
47159514 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTAT-ATAGCACTGAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
47159578 GTGCG
64 GTGCG
47159583 GACTCAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.28
82 44 0.72
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47175271 original size:19 final size:20
Alignment explanation
Indices: 47175247--47175290 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
47175237 TTTATGCTTC
*
47175247 TTCTTCTC-GTACGTTTGTT
1 TTCTTCTCTGTACGTTTCTT
*
47175266 TTCTTCTCTTTACGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
47175286 TTCTT
1 TTCTT
47175291 TTCTCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.05, C:0.23, G:0.09, T:0.64
Consensus pattern (20 bp):
TTCTTCTCTGTACGTTTCTT
Found at i:47178808 original size:10 final size:10
Alignment explanation
Indices: 47178790--47178820 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
47178780 TACGGTTAGG
47178790 TTATATATTA
1 TTATATATTA
*
47178800 TTTTATATTA
1 TTATATATTA
47178810 TTATATATTA
1 TTATATATTA
47178820 T
1 T
47178821 AATTTTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATATATTA
Found at i:47178865 original size:10 final size:10
Alignment explanation
Indices: 47178850--47178874 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47178840 AAGAATAATA
47178850 AAATTGTCTT
1 AAATTGTCTT
47178860 AAATTGTCTT
1 AAATTGTCTT
47178870 AAATT
1 AAATT
47178875 AGTAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (10 bp):
AAATTGTCTT
Found at i:47179697 original size:25 final size:25
Alignment explanation
Indices: 47179655--47179704 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47179645 ATCTGATCGA
* * *
47179655 TTTGGGTTTTGAATTTTCATACTTT
1 TTTGAGTTTTGAACTTTCAAACTTT
*
47179680 TTTGAGTTTTGAGCTTTCAAACTTT
1 TTTGAGTTTTGAACTTTCAAACTTT
47179705 ATTTAGACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.18, C:0.10, G:0.16, T:0.56
Consensus pattern (25 bp):
TTTGAGTTTTGAACTTTCAAACTTT
Found at i:47180949 original size:19 final size:19
Alignment explanation
Indices: 47180925--47180965 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
47180915 ATTTAATCCT
*
47180925 AATTCTAATCAAATTTTAA
1 AATTCTAATAAAATTTTAA
*
47180944 AATTCTCATAAAATTTTAA
1 AATTCTAATAAAATTTTAA
47180963 AAT
1 AAT
47180966 ATAAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCTAATAAAATTTTAA
Found at i:47186472 original size:44 final size:44
Alignment explanation
Indices: 47186424--47186967 Score: 331
Period size: 44 Copynumber: 12.6 Consensus size: 44
47186414 ATTTTAATCC
* *
47186424 GCTCCACTGCAACTTCAGGGAGATATGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * * **
47186468 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGC-AAT-T-T
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * ** * *
47186509 GCTCTACTGCAACTTTAAAGAGATAAGGTCTGTGGTT-TTCT-TCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GGTTCTTCTGTCT
* * *
47186553 GCTCCACTACAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * *
47186597 GCTCCACTGCAACTTCAGGGAGATAAGACT-GG--ATGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTG-TCT
* * ** *
47186638 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GGTTCTTCTGTCT
* * * * ** *
47186682 ACTCTACTGCAACTTCAGGTAGATAGGATTGACTTCTTCTGTTT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * * * **
47186726 GCTCCACTGTAACTTCAGGGAGATAAGACTGGATGC-GAT-T-T
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * * ** *
47186767 GCTCTACTGCAACTTCAGAGAGATAAGGTCTGTGGTT-TT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GGTTCTTCTGTCT
* *
47186811 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
* * * * *
47186855 GCTCCACTGCAACTTTAGGGAGATAAGACTGGATGCAATCTG-CT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTC-TTCTGTCT
** ** *
47186899 -CT--ACTGCAACTTCAAAGAGATAAGATTTGTGGTT-TT-AATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA-TTG-GGTTCTTCTGTCT
* *
47186940 GGTCTACTGCAACTTCAGGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
47186968 CTGGATGCGA
Statistics
Matches: 375, Mismatches: 96, Indels: 58
0.71 0.18 0.11
Matches are distributed among these distances:
40 1 0.00
41 102 0.27
42 18 0.05
43 28 0.07
44 221 0.59
45 5 0.01
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTGGGTTCTTCTGTCT
Found at i:47186583 original size:129 final size:129
Alignment explanation
Indices: 47186356--47186964 Score: 934
Period size: 129 Copynumber: 4.7 Consensus size: 129
47186346 TACAACTTTA
** **
47186356 AGGGA-ATAAGATCT-GATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTT
1 AGGGAGATAAGA-CTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTT
* *
47186419 AATCCGCTCCACTGCAACTTCAGGGAGATATGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTC
65 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
* * * * *
47186484 AGGGAGATAAGACTGGATGCAATTTGCTCTACTGCAACTTTAAAGAGATAAGGTCTGTGGTTTTC
1 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* *
47186549 TTCCGCTCCACTACAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
66 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
*
47186613 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * * *
47186678 ATCCACTCTACTGCAACTTCAGGTAGATAGGATTGACTTCTTCTGTTTGCTCCACTGTAACTTC
66 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
*
47186742 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGGTCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* *
47186807 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTT
66 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
* * * *
47186871 AGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* *
47186936 ATCCGGTCTACTGCAACTTCAGGGAGATA
66 ATCCGCTCCACTGCAACTTCAGGGAGATA
47186965 AGACTGGATG
Statistics
Matches: 435, Mismatches: 44, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
128 7 0.02
129 428 0.98
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
AGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTC
Found at i:47186817 original size:214 final size:212
Alignment explanation
Indices: 47186597--47187052 Score: 535
Period size: 214 Copynumber: 2.1 Consensus size: 212
47186587 TCTTCTGTCT
*
47186597 GCTCCACTGCAACTTCAGGGAGATAAGACTGG-ATGC-GATCTGCTCTACTGCAACTTCAGAGAG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGTATGCTG-TCTGCTCCACTGCAACTTCAGAGAG
* ** * * *
47186660 ATAAGATCTGTGGTTTTAATCCACTCTACTGCAACTTC-AGGTAGATAGGA-TTG-ACTTCTTCT
65 ATAAGA-C--TGGATGCAATCCACTCTACTGCAACTTCAAAG-AGATAAGATTTGTACTT-TT-A
* ** *
47186722 GTTTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAG
124 ATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAG
*
47186787 AGATAAGGTCTGTGGTTTTAATCC
189 AGATAAGATCTGTGGTTTTAATCC
* * * * * *
47186811 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGG--TATGCTGTCTGCTCCACTGCAACTTCAGAGA
** **
47186876 GATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAATCCG
64 GATAAGACTGGATGCAATCCACTCTACTGCAACTTCAAAGAGATAAGATTTGTACTTTTAATCCG
* * *
47186941 GTCTACTGCAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGTAACTTCAGAGAGATA
129 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATA
47187006 AGATCTGTGGTTTTAATCC
194 AGATCTGTGGTTTTAATCC
* * * *
47187025 ACTCCACTGCAATTTGATGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
47187053 TTGACTTTTG
Statistics
Matches: 205, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
214 164 0.80
215 7 0.03
216 3 0.01
217 30 0.15
218 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (212 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGGTATGCTGTCTGCTCCACTGCAACTTCAGAGAGA
TAAGACTGGATGCAATCCACTCTACTGCAACTTCAAAGAGATAAGATTTGTACTTTTAATCCGCT
CCACTGCAACTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAG
ATCTGTGGTTTTAATCC
Found at i:47187015 original size:85 final size:85
Alignment explanation
Indices: 47186356--47187052 Score: 409
Period size: 85 Copynumber: 8.1 Consensus size: 85
47186346 TACAACTTTA
* ** **
47186356 AGGGA-ATAAGATCT-GATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTT
1 AGGGAGATAAGA-CTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTT
*
47186419 AATCCGCTCCACTGCAACTTC
65 AATCCGCTCTACTGCAACTTC
* * * * * * *
47186440 AGGGAGATATGATTGGTTTCTTCTG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGGA
1 AGGGAGATAAGACTGG---ATGC-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
** ** *
47186501 TGCAATTTGCTCTACTGCAACTTT
62 TTTAATCCGCTCTACTGCAACTTC
** * * * * * * * * * *
47186525 AAAGAGATAAGGTCTGTGGTTTTC-TTCCGCTCCACTACAACTTCAGGGAGATAGGAT-TG-GCT
1 AGGGAGATAA-GAC--TGG-ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
** * *
47186587 TCTTCTGTCTGCTCCACTGCAACTTC
62 T-TT-AATCCGCTCTACTGCAACTTC
47186613 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
*
47186678 ATCCACTCTACTGCAACTTC
66 ATCCGCTCTACTGCAACTTC
* ** * * * * *
47186698 AGGTAGATAGGATTGACT-TCTTCTG-TTTGCTCCACTGTAACTTCAGGGAGATAAGA-C--TGG
1 AGGGAGATA--A--GACTGGATGC-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* *** **
47186758 ATGCGATTTGCTCTACTGCAACTTC
61 TTTTAATCCGCTCTACTGCAACTTC
* * * *** * * * * *
47186783 AGAGAGATAAGGTCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTT
1 AGGGAGATAA-GAC--TGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTT
** * * *
47186846 CTTCTGTCTGCTCCACTGCAACTTT
63 -TT-AATCCGCTCTACTGCAACTTC
* * *
47186871 AGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
*
47186936 ATCCGGTCTACTGCAACTTC
66 ATCCGCTCTACTGCAACTTC
* *
47186956 AGGGAGATAAGACTGGATGCGATTTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
47187021 ATCCACTCCACTGCAATTTG
66 ATCCGCTCTACTGCAACTTC
*
47187041 ATGGAGATAAGA
1 AGGGAGATAAGA
47187053 TTGACTTTTG
Statistics
Matches: 464, Mismatches: 115, Indels: 67
0.72 0.18 0.10
Matches are distributed among these distances:
82 2 0.00
83 1 0.00
84 9 0.02
85 305 0.66
86 17 0.04
87 13 0.03
88 111 0.24
89 6 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (85 bp):
AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
ATCCGCTCTACTGCAACTTC
Found at i:47187036 original size:258 final size:254
Alignment explanation
Indices: 47186295--47187008 Score: 939
Period size: 258 Copynumber: 2.8 Consensus size: 254
47186285 TGATTCATCA
** * *
47186295 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA----TTAAT-TG-CT--TCAACTACAAC
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTCTTCTGTCTGCTCCACTGCAAC
* ** **
47186352 TTTAAGGGA-ATAAGATCT-GATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCA
66 TTT-AGGGAGATAAGA-CTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* * * * * *
47186415 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATATGATTGGTTTCTTCTGTCTGCTCCACTGCAA
129 TTTTAATCCGCTCTACTGCAACTTCAGGGAGATAAGACTGG---ATTCTGTTTGCTCCACTGTAA
*
47186480 CTTCAGGGAGATAAGACTGGATGCAATTTGCTCTACTGCAACTTTAAAGAGATAAGGTCTGTGG
191 CTTCAGGGAGATAAGACTGGATGCAATTTGCTCTACTGCAACTTCAAAGAGATAAGGTCTGTGG
** *
47186544 TTTTCTTCCGCTCCACTACAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGG-TTCTTCTGTCTGCTCCACTGCAA
*
47186609 CTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
65 CTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
* * **
47186674 TTTAATCCACTCTACTGCAACTTCAGGTAGATAGGATTGACT-TCTTCTGTTTGCTCCACTGTAA
130 TTTAATCCGCTCTACTGCAACTTCAGGGAGATA--A--GACTGGATTCTGTTTGCTCCACTGTAA
* *
47186738 CTTCAGGGAGATAAGACTGGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGGTCTGTGG
191 CTTCAGGGAGATAAGACTGGATGCAATTTGCTCTACTGCAACTTCAAAGAGATAAGGTCTGTGG
47186802 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAA
1 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGG-TTCTTCTGTCTGCTCCACTGCAA
* * *
47186867 CTTTAGGGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAAAGAGATAAGATTTGTGGT
65 CTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
* * *
47186932 TTTAATCCGGTCTACTGCAACTTCAGGGAGATAAGACTGGATGC-GATTTGCTCTACTGTAACTT
130 TTTAATCCGCTCTACTGCAACTTCAGGGAGATAAGACTGGATTCTG-TTTGCTCCACTGTAACTT
*
47186996 CAGAGAGATAAGA
194 CAGGGAGATAAGA
47187009 TCTGTGGTTT
Statistics
Matches: 408, Mismatches: 40, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
249 34 0.08
254 8 0.02
255 33 0.08
256 3 0.01
257 7 0.02
258 320 0.78
262 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (254 bp):
TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTCTTCTGTCTGCTCCACTGCAAC
TTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTT
TTAATCCGCTCTACTGCAACTTCAGGGAGATAAGACTGGATTCTGTTTGCTCCACTGTAACTTCA
GGGAGATAAGACTGGATGCAATTTGCTCTACTGCAACTTCAAAGAGATAAGGTCTGTGG
Found at i:47187251 original size:50 final size:50
Alignment explanation
Indices: 47187100--47188418 Score: 308
Period size: 50 Copynumber: 26.9 Consensus size: 50
47187090 ACAATTCGCT
* * * * *
47187100 GTTGTAGTTTCAATCTGTCCCATTACACCGCTAGGGAAGTAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * ** * * * *
47187150 GTTGCAGCTTCAATCTTTTTAATTGCAACGTC-GAGGAA-CAAGATTTGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAG-GGAAGTAAGATTTACC
* * *
47187199 GTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGATTTTCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * ** ** *** * *
47187249 GTTGTGGCTTCAATCTTTTAAATTGCAATGTTGGGGAAGCAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * * * * **
47187299 GTCGTAGCTCCAATCTGCTCCACTGTACCGCCAGGGGAGTAAGATTCGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * * ** * ** * * ** **
47187349 GTTGTGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * ** * * * **
47187399 GTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGTAAGATTCATT
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
*** * ** **** * *
47187449 GTTACGGCTTCAATCTTTTAAATTGCAATATC-GTGGAAGCAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAG-GGAAGTAAGATTTACC
* * * * * *
47187499 GTCGTAGCTTCAATCTGCTCCACTGCACTGCCAGAGAAGTAAGATTTGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
*** * ** ** * * * *
47187549 GTTACGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * *
47187599 ATTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * ** ** * * * *
47187649 GTTG-CGACTTCAATCTTTTTGATTGCAATGTCGGGGAA-TAAGATTCACT
1 GTTGTAG-CTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * *
47187698 GTTGTAGCTTTAATCTGTT-C----CA----C---TAAGTAAGATTCATC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
** * ** * **** * * * *
47187736 GTTGCGGCTTCAATCTTTTAAATTGTAATATCGGGGAAGCAAGACTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * * * **
47187786 GTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGTAAGATTCGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
** * * * ** * ** * * ** *
47187836 GTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * ** * * * **
47187886 GTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGTAAGATTCATT
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
*** * ** ** *
47187936 GTTACGGCTTCAATCTTTTAAATTGCAATGCC-GTGGAAGTAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAG-GGAAGTAAGATTTACC
* * ** * *
47187986 GTCGTAGCTTCAATCTGTTCCACTGCACTACCAGAGAAGTAAGATTTGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
** * ** ** * * * *
47188036 GTTACAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * *
47188086 GTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * ** ** * * *
47188136 ATTG-CGACTTCAATCTTTTTGATTGCAATGTCGGGGAA-TAAGATTCACC
1 GTTGTAG-CTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * *
47188185 GTTGTAGCTTTAATCTGTT-C----CA----C---TAAGTAAGATTCACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
** * ** ** * * *
47188223 GTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTACC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
** * * *
47188273 GTCATAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTTGCC
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * * ** *** * ** * *
47188323 GTTGCAGCTTTAATATTTTAAATTGCAATACCGGGGAAACAAGATTCACT
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
* * * *
47188373 ATCGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGTAAGATT
1 GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATT
47188419 CGTCGTTGCG
Statistics
Matches: 854, Mismatches: 378, Indels: 74
0.65 0.29 0.06
Matches are distributed among these distances:
37 4 0.00
38 50 0.06
40 2 0.00
43 3 0.00
44 4 0.00
47 2 0.00
49 85 0.10
50 702 0.82
51 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (50 bp):
GTTGTAGCTTCAATCTGTTCCATTGCACCGCCAGGGAAGTAAGATTTACC
Found at i:47187343 original size:100 final size:100
Alignment explanation
Indices: 47187075--47188446 Score: 1461
Period size: 100 Copynumber: 14.0 Consensus size: 100
47187065 TAATTAACTA
* * * * * * *
47187075 CAATGTCGGGGAAGCACA-ATTCGCTGTTGTAGTTTCAATCTG-TCCCATTACACCGCTAGGGAA
1 CAATGTCGGGGAAGCA-AGATTCACCGTCGTAGCTTCAATCTGCT-CCACTGCACCGCCAGGGAA
** * *
47187138 GTAAGATTCACCGTTGCAGCTTCAATCTTTTTAATTG
64 GTAAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * ** * * *
47187175 CAACGTCGAGGAA-CAAGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* *
47187239 AAGATTTTCCGTTGTGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * *
47187274 CAATGTTGGGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGTACCGCCAGGGGAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * * *
47187339 AAGATTCGCCGTTGTGGCTTTAATATTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * * ** * *
47187374 TAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
**** *
47187439 AAGATTCATTGTTACGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * *
47187474 CAATATCGTGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACTGCCAGAGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
*
47187539 AAGATTTGCCGTTACGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * *
47187574 CAATGTCGGGGAAGCAAGATTCACCATTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * **
47187639 AAGATTTACCGTTGCGACTTCAATCTTTTTGATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * * *
47187674 CAATGTCGGGGAA-TAAGATTCACTGTTGTAGCTTTAATCTGTTCCACT------------AAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
***
47187726 AAGATTCATCGTTGCGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * * *
47187761 TAATATCGGGGAAGCAAGACTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * *
47187826 AAGATTCGCCGTTGCGGCTTTAATATTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * ** * *
47187861 TAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
**** *
47187926 AAGATTCATTGTTACGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * * ** *
47187961 CAATGCCGTGGAAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTGCACTACCAGAGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* *
47188026 AAGATTTGCCGTTACAGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* *
47188061 CAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * * **
47188126 AAGATTTACCATTGCGACTTCAATCTTTTTGATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* * * *
47188161 CAATGTCGGGGAA-TAAGATTCACCGTTGTAGCTTTAATCTGTTCCACT------------AAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
**
47188213 AAGATTCACCGTTGCGGCTTCAATCTTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
* *
47188248 CAATGTCGGGGAAGCAAGATTTACCGTCATAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * *
47188313 AAGATTTGCCGTTGCAGCTTTAATATTTTAAATTG
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
** * ** **
47188348 CAATACCGGGGAAACAAGATTCACTATCGTAGCTTCAATCTATTCCACTGCACCGCCAGGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
* * *
47188413 AAGATTCGTCGTTGCGGCTTCAATATTTTAAATT
66 AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATT
47188447 ACAACCTCAA
Statistics
Matches: 1067, Mismatches: 176, Indels: 58
0.82 0.14 0.04
Matches are distributed among these distances:
87 92 0.09
88 57 0.05
98 1 0.00
99 142 0.13
100 775 0.73
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (100 bp):
CAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGT
AAGATTTGCCGTTGCGGCTTCAATCTTTTAAATTG
Found at i:47188000 original size:487 final size:487
Alignment explanation
Indices: 47187075--47188446 Score: 2079
Period size: 487 Copynumber: 2.8 Consensus size: 487
47187065 TAATTAACTA
* * * * * * *
47187075 CAATGTCGGGGAAGCACA-ATTCGCTGTTGTAGTTTCAATCTG-TCCCATTACACCGCTAGGGAA
1 CAATGTCGGGGAAGCA-AGATTCACCGTTGTAGCTTCAATCTGCT-CCACTGCACCGCCAAGGAA
* * * * * **
47187138 GTAAGATTCACCGTTGC-AGCTTCAATCTTTTTAATTGCAACGTCGAGGAACAAGATTTGCCGTT
64 GTAAGATTTACCGTTGCGA-CTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACCGTT
* * *
47187202 GTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAGTAAGATT-TTCCGTTGTGGCTTCAATCTT
128 GTAGCTTTAATCTGTTCCACT------------AAGTAAGATTCAT-CGTTGCGGCTTCAATCTT
* *
47187266 TTAAATTGCAATGTTGGGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGTACCGCC
180 TTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCC
*
47187331 AGGGGAGTAAGATTCGCCGTTGTGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTC
245 AGGGGAGTAAGATTCGCCGTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTC
*
47187396 GCCGTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCA
310 ACCGTCGTAGCTTCAATCTGATCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCA
*
47187461 ATCTTTTAAATTGCAATATCGTGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCA
375 ATCTTTTAAATTGCAATACCGTGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCA
* *
47187526 CTGCCAGAGAAGTAAGATTTGCCGTTACGGCTTCAATCTTTTAAATTG
440 CTACCAGAGAAGTAAGATTTGCCGTTACAGCTTCAATCTTTTAAATTG
*
47187574 CAATGTCGGGGAAGCAAGATTCACCATTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
*
47187639 AAGATTTACCGTTGCGACTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACTGTTGTA
66 AAGATTTACCGTTGCGACTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACCGTTGTA
* *
47187704 GCTTTAATCTGTTCCACTAAGTAAGATTCATCGTTGCGGCTTCAATCTTTTAAATTGTAATATCG
131 GCTTTAATCTGTTCCACTAAGTAAGATTCATCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCG
*
47187769 GGGAAGCAAGACTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGTAAGATTCG
196 GGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGTAAGATTCG
47187834 CCGTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAA
261 CCGTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAA
47187899 TCTGATCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCAATCTTTTAAATTGCAA
326 TCTGATCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCAATCTTTTAAATTGCAA
* * *
47187964 TGCCGTGGAAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTGCACTACCAGAGAAGTAAG
391 TACCGTGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACTACCAGAGAAGTAAG
47188029 ATTTGCCGTTACAGCTTCAATCTTTTAAATTG
456 ATTTGCCGTTACAGCTTCAATCTTTTAAATTG
47188061 CAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
1 CAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
*
47188126 AAGATTTACCATTGCGACTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACCGTTGTA
66 AAGATTTACCGTTGCGACTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACCGTTGTA
*
47188191 GCTTTAATCTGTTCCACTAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCG
131 GCTTTAATCTGTTCCACTAAGTAAGATTCATCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCG
* * * * *
47188256 GGGAAGCAAGATTTACCGTCATAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTTG
196 GGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGTAAGATTCG
* * ** **
47188321 CCGTTGCAGCTTTAATATTTTAAATTGCAATACCGGGGAAACAAGATTCACTATCGTAGCTTCAA
261 CCGTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAA
** * * * * * *
47188386 TCT-ATTCCACTGCACCGCCAGGGAAGTAAGATTCGTCGTTGCGGCTTCAATATTTTAAATT
326 TCTGA-TCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCAATCTTTTAAATT
47188447 ACAACCTCAA
Statistics
Matches: 810, Mismatches: 58, Indels: 22
0.91 0.07 0.02
Matches are distributed among these distances:
486 1 0.00
487 680 0.84
488 1 0.00
498 1 0.00
499 125 0.15
500 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (487 bp):
CAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGT
AAGATTTACCGTTGCGACTTCAATCTTTTTGATTGCAATGTCGGGGAATAAGATTCACCGTTGTA
GCTTTAATCTGTTCCACTAAGTAAGATTCATCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCG
GGGAAGCAAGATTCACCGTCGTAGCTCCAATCTGCTCCACTGCACCGCCAGGGGAGTAAGATTCG
CCGTTGCGGCTTTAATATTTTAAATTGTAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAA
TCTGATCCACTATACTGCCAAGGAAGTAAGATTCATTGTTACGGCTTCAATCTTTTAAATTGCAA
TACCGTGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTGCACTACCAGAGAAGTAAG
ATTTGCCGTTACAGCTTCAATCTTTTAAATTG
Found at i:47188350 original size:187 final size:188
Alignment explanation
Indices: 47188022--47188396 Score: 529
Period size: 187 Copynumber: 2.0 Consensus size: 188
47188012 ACTACCAGAG
**
47188022 AAGTAAGATTTGCCGTTACAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCACCGTTACAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
** *
47188087 TTGTAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATCT
66 TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATAT
** ** * * * * *
47188152 TTTTGATTGCAATGTCGGGG-AATAAGATTCACCGTTGTAGCTTTAATCTGTTCCACT
131 TTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
* * *
47188209 AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTACCG
1 AAGTAAGATTCACCGTTACAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
* * * *
47188274 TCATAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTTGCCGTTGC-AGCTTTAATA
66 TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGA-CTTCAATA
*
47188338 TTTTAAATTGCAATACCGGGGAAACAAGATTCACTATCGTAGCTTCAATCTATTCCACT
130 TTTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
47188397 GCACCGCCAG
Statistics
Matches: 164, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
186 1 0.01
187 132 0.80
188 31 0.19
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (188 bp):
AAGTAAGATTCACCGTTACAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATAT
TTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
Found at i:47189504 original size:10 final size:10
Alignment explanation
Indices: 47189489--47189513 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47189479 TTTTGTTTTT
47189489 TTATTATTTA
1 TTATTATTTA
47189499 TTATTATTTA
1 TTATTATTTA
47189509 TTATT
1 TTATT
47189514 TTTTTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTATTTA
Found at i:47192229 original size:24 final size:25
Alignment explanation
Indices: 47192202--47192255 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
47192192 GGGTTTTTTC
*
47192202 ATGAAATTTAATGCAAATG-ATGCA
1 ATGAAATGTAATGCAAATGAATGCA
* *
47192226 ATGAAATGTAATGCAGATGAATGGA
1 ATGAAATGTAATGCAAATGAATGCA
47192251 ATGAA
1 ATGAA
47192256 TGCAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.26
Consensus pattern (25 bp):
ATGAAATGTAATGCAAATGAATGCA
Found at i:47198550 original size:25 final size:25
Alignment explanation
Indices: 47198489--47198552 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
47198479 TGCGAGAAAG
***
47198489 ATGCTCACACAAGTTGTAACTGTAA
1 ATGCTCACACAAGCCATAACTGTAA
* ** *
47198514 TTGCTCTTACAAGCCATATCTGTAA
1 ATGCTCACACAAGCCATAACTGTAA
47198539 ATGCTCACACAAGC
1 ATGCTCACACAAGC
47198553 TGTGAAATGG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (25 bp):
ATGCTCACACAAGCCATAACTGTAA
Found at i:47211070 original size:17 final size:17
Alignment explanation
Indices: 47211048--47211086 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
47211038 CATTGAGGTT
47211048 AAATATAA-ATATTAATA
1 AAATATAATATA-TAATA
*
47211065 AAATATAATATATATTA
1 AAATATAATATATAATA
47211082 AAATA
1 AAATA
47211087 ATTTTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATATATAATA
Found at i:47211534 original size:30 final size:30
Alignment explanation
Indices: 47211500--47211561 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
47211490 CTTAACAAGT
47211500 AAATGTCTCTAAAATAATAATAAAATTAAC
1 AAATGTCTCTAAAATAATAATAAAATTAAC
*
47211530 AAATGTCTTTAAAATAATAATAAAATTAAC
1 AAATGTCTCTAAAATAATAATAAAATTAAC
47211560 AA
1 AA
47211562 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAATAAAATTAAC
Found at i:47215636 original size:12 final size:12
Alignment explanation
Indices: 47215591--47215649 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
47215581 TTTTTTTAGT
47215591 TTAT-TTTATTA
1 TTATATTTATTA
* *
47215602 ATATAGTTATTA
1 TTATATTTATTA
*
47215614 TT-TTTTTATTA
1 TTATATTTATTA
47215625 TTACTA-TTATTA
1 TTA-TATTTATTA
47215637 TTATATTTATTA
1 TTATATTTATTA
47215649 T
1 T
47215650 ACTTACATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
11 14 0.37
12 23 0.61
13 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (12 bp):
TTATATTTATTA
Found at i:47215652 original size:23 final size:23
Alignment explanation
Indices: 47215591--47215652 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
47215581 TTTTTTTAGT
47215591 TTATTTTATTAATA-TAGTTATTA
1 TTATTTTATT-ATACTAGTTATTA
*
47215614 TTTTTTTATTATTACTA-TTATTA
1 TTATTTTATTA-TACTAGTTATTA
47215637 TTATATTTATTATACT
1 TTAT-TTTATTATACT
47215653 TACATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 1 0.03
23 24 0.71
24 9 0.26
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (23 bp):
TTATTTTATTATACTAGTTATTA
Found at i:47215787 original size:13 final size:13
Alignment explanation
Indices: 47215756--47215780 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47215746 ATTACCTATT
47215756 TTTATATATATAG
1 TTTATATATATAG
47215769 TTTATATATATA
1 TTTATATATATA
47215781 TTATATACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTTATATATATAG
Found at i:47215826 original size:25 final size:26
Alignment explanation
Indices: 47215798--47215857 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
47215788 CATTCATATT
47215798 TTTTATAATT-ATTTATGTTT-T-CATG
1 TTTTATAATTCA--TATGTTTATACATG
*
47215823 TTTTATAATTCATATGTTTATACATT
1 TTTTATAATTCATATGTTTATACATG
47215849 TTTTATAAT
1 TTTTATAAT
47215858 ATGTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
25 11 0.35
26 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTATAATTCATATGTTTATACATG
Found at i:47215826 original size:26 final size:26
Alignment explanation
Indices: 47215795--47215857 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
47215785 ATACATTCAT
47215795 ATTTTTTATAATT-ATTTATGTTT-T-C
1 ATTTTTTATAATTCA--TATGTTTATAC
*
47215820 ATGTTTTATAATTCATATGTTTATAC
1 ATTTTTTATAATTCATATGTTTATAC
47215846 ATTTTTTATAAT
1 ATTTTTTATAAT
47215858 ATGTACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 13 0.39
26 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATTTTTTATAATTCATATGTTTATAC
Found at i:47222510 original size:132 final size:132
Alignment explanation
Indices: 47222177--47223177 Score: 1386
Period size: 132 Copynumber: 7.6 Consensus size: 132
47222167 TCGAAGATAC
** *
47222177 TAATTCTATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCA
1 TAATTCTATCTCCCTAGG-CAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCA
** *
47222241 TTAGTGGAACAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
65 TTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
47222306 C-G
130 CAG
** *
47222308 TAATTCTATCTCCCT-GGTTGGCAGTGGAATTGATTGAAGATTACAGATCTTATCTCCCTAGGCA
1 TAATTCTATCTCCCTAGG-CAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCA
* *
47222372 TTAGTGGAGTAGGTCGAAGATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGC
65 TTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
47222437 CAG
130 CAG
* * * *
47222440 TAATTCTGTCTCCCTAGGCAGTAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCAG
1 TAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
47222505 TAGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
47222570 AG
131 AG
* *
47222572 TAATTCTATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * *
47222637 TAGTAGAGTAGATCGAAGATGGCAAATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
47222702 AG
131 AG
* *
47222704 AAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCAT
1 TAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * **
47222769 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCTTGAGGTTACAATCAAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
47222834 AG
131 AG
* * * * * * **
47222836 TAATTCTATCTCCTTGGGCAGCAGTGGAATTGATTGAAGATTTCAGATCTTATCTCCTTAAGCGG
1 TAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * *
47222901 TAGTGGAGCAGATCGAAGATGGC-GAATTTTACCTCCTTGGGGTTACAGTGGAGTACATTGAAGC
66 TAGTGGAGTAGATCGAAGATGGCAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
47222965 CAG
130 CAG
* ** * * *
47222968 TAATTCTATCCCCCT-GGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCA
1 TAATTCTATCTCCCTAGG-CAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCA
* * *
47223032 TTAGTGGAGCAGATCAAAGATGGCAGATTTGACCTCCCT-AGGATTACAGTGGAGTACATTGAAG
65 TTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGG-TTACAGTGGAGTACATTGAAG
47223096 CCAG
129 CCAG
* * * * * * *
47223100 TAATTCTATCTCCTTAGTC-GATAGTGGAATCGATCGAAGAATAGCAGATCTTATCTCCCTAAGC
1 TAATTCTATCTCCCTAGGCAG-CAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGC
*
47223164 AGTAGTGGAGTAGA
64 ATTAGTGGAGTAGA
47223178 CTGATAACGG
Statistics
Matches: 783, Mismatches: 78, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
131 129 0.16
132 619 0.79
133 35 0.04
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
TAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
AG
Found at i:47222795 original size:44 final size:44
Alignment explanation
Indices: 47222199--47222804 Score: 287
Period size: 44 Copynumber: 13.8 Consensus size: 44
47222189 CCTGGTTGGC
* **
47222199 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
** * * * *
47222243 AGTGGAACAGATCGAAGATGGCAGATTTTACCTCCCT-GTG-GTT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAG-GCATT
* ** *
47222286 ACAGTGGAGTACATTGAAG-CCGTA-AT-TCTATCTCCCT-GG--TT
1 --AGTGGAGTAGATTGAAGATGGCAGATCT-TATCTCCCTAGGCATT
* * **
47222327 GGCAGTGGAATTGATTGAAGATTACAGATCTTATCTCCCTAGGCATT
1 ---AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
* * * * *
47222374 AGTGGAGTAGGTCGAAGATGGCAGATTTTACCTCCCTGAGG-TTAT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCT-AGGCAT-T
* *** * * *
47222419 AGTGGAGTACATTGAAGCCAGTA-AT-TCTGTCTCCCTAGGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATCT-TATCTCCCTAGGCATT
* ** * *
47222462 AGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCAGT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
** * *
47222506 AGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTAAGG--TT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCT-AGGCATT
* *** * * * **
47222549 ACAGTGGAGTACATTGAAGCCAGTA-AT-TCTATCTCTCTGGGCAGC
1 --AGTGGAGTAGATTGAAGATGGCAGATCT-TATCTCCCTAGGCATT
* **
47222594 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
* * * * *
47222638 AGTAGAGTAGATCGAAGATGGCAAATTTTACCTCCCTGAGG--TT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCT-AGGCATT
* * *** * **
47222681 ACAATGGAGTACATTGAAGCCAG-AAAT-TCTATCTCCCTAGGCAGC
1 --AGTGGAGTAGATTGAAGATGGCAGATCT-TATCTCCCTAGGCATT
* ** *
47222726 AGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
* * *
47222770 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCC
1 AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCC
47222805 TTGAGGTTAC
Statistics
Matches: 409, Mismatches: 120, Indels: 66
0.69 0.20 0.11
Matches are distributed among these distances:
41 2 0.00
42 17 0.04
43 76 0.19
44 237 0.58
45 75 0.18
47 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATGGCAGATCTTATCTCCCTAGGCATT
Found at i:47224653 original size:12 final size:12
Alignment explanation
Indices: 47224636--47224682 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
47224626 TATTAATATA
*
47224636 ATTTTTATTTTT
1 ATTTTTATTATT
47224648 ATTTTTATTATT
1 ATTTTTATTATT
* *
47224660 ACTATTATTATT
1 ATTTTTATTATT
*
47224672 ATATTTATTAT
1 ATTTTTATTAT
47224683 ACTTACATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
ATTTTTATTATT
Found at i:47224856 original size:25 final size:26
Alignment explanation
Indices: 47224828--47224887 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
47224818 CATTCATATT
47224828 TTTTATAATT-ATTTATGTTT-T-CATG
1 TTTTATAATTCA--TATGTTTATACATG
*
47224853 TTTTATAATTCATATGTTTATACATT
1 TTTTATAATTCATATGTTTATACATG
47224879 TTTTATAAT
1 TTTTATAAT
47224888 ATGTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
25 11 0.35
26 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTATAATTCATATGTTTATACATG
Found at i:47224856 original size:26 final size:26
Alignment explanation
Indices: 47224825--47224887 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
47224815 ATACATTCAT
47224825 ATTTTTTATAATT-ATTTATGTTT-T-C
1 ATTTTTTATAATTCA--TATGTTTATAC
*
47224850 ATGTTTTATAATTCATATGTTTATAC
1 ATTTTTTATAATTCATATGTTTATAC
47224876 ATTTTTTATAAT
1 ATTTTTTATAAT
47224888 ATGTACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 13 0.39
26 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATTTTTTATAATTCATATGTTTATAC
Found at i:47228969 original size:18 final size:18
Alignment explanation
Indices: 47228946--47228982 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47228936 TAACATGGGG
47228946 CATTAGTTATTGGCATCT
1 CATTAGTTATTGGCATCT
*
47228964 CATTAGTTGTTGGCATCT
1 CATTAGTTATTGGCATCT
47228982 C
1 C
47228983 TTTGCGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (18 bp):
CATTAGTTATTGGCATCT
Found at i:47229606 original size:23 final size:22
Alignment explanation
Indices: 47229575--47229617 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47229565 TTATCAGCCT
*
47229575 AAATCACAAGTCCAAAAAAATTA
1 AAATCACAA-CCCAAAAAAATTA
*
47229598 AAATTACAACCCAAAAAAAT
1 AAATCACAACCCAAAAAAAT
47229618 GAAGGCCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.63, C:0.19, G:0.02, T:0.16
Consensus pattern (22 bp):
AAATCACAACCCAAAAAAATTA
Found at i:47230874 original size:17 final size:17
Alignment explanation
Indices: 47230855--47230886 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47230845 AAAATAAACA
47230855 AAAAGAA-AAAGAAAAG
1 AAAAGAAGAAAGAAAAG
47230871 AAAAGAAGAAAGAAAA
1 AAAAGAAGAAAGAAAA
47230887 AAGAGAGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAGAAGAAAGAAAAG
Found at i:47231925 original size:45 final size:45
Alignment explanation
Indices: 47231831--47232204 Score: 349
Period size: 45 Copynumber: 8.4 Consensus size: 45
47231821 GGAGCAGGCT
* * * * * *
47231831 GAAGATAGCAGATCTTGTC-TCCT-TGAGTAGCAGTGGAGTAGGTC
1 GAAGATAGTAGATCTTGTCTTCCTGT-ATTGGCAGCGAAGTAGATC
* * * *
47231875 AAAGATTGTAGCTCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
*
47231920 GAAGATAG-AAAGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-C
1 GAAGATAGTAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * *
47231964 TGAAGATAGTAGATCTTGTCTTCGTGTATTTGCAGCGAAGTAGGTC
1 -GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
47232010 GAAGATAGCATATCTTGTCTTCTTGTATTGGCAGCGAAGTGGATC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * *
47232055 GAATATAGTAGATCTTGTCTCCCTG-A---GCAGCAGTAGAGTAGGTC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGC-G-A-AGTAGATC
* *
47232099 GAAGA-ATGTAGATCTTTTCTTCCTGTATTGGCAGCGAGGTAGATC
1 GAAGATA-GTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* *
47232144 GAAGATAGCA-AGTCTTATCTTCCTGTATTGGCAGCGAAGTAGA-C
1 GAAGATAGTAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
47232188 TGAAGATAGCT-GATCTT
1 -GAAGATAG-TAGATCTT
47232205 ATCTCTCTGA
Statistics
Matches: 272, Mismatches: 39, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
41 5 0.02
42 1 0.00
43 2 0.01
44 46 0.17
45 205 0.75
46 7 0.03
47 1 0.00
48 5 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (45 bp):
GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
Found at i:47232203 original size:134 final size:134
Alignment explanation
Indices: 47231887--47232214 Score: 350
Period size: 134 Copynumber: 2.4 Consensus size: 134
47231877 AGATTGTAGC
* * * * *
47231887 TCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAG-AAAGTCTTGTCTTCCTGTATTGG
1 TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGA-TCTTATCTCCCTG-A---G
* * * *
47231951 CAGC-G-A-AGTA-GACTGAAG-ATAGTAGATCTTGTCTTCGTGTATTTGCAGCGAAGTAGGTCG
61 CAGCAGTAGAGTAGGTC-GAAGAAT-GTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCG
47232011 AAGATAGCATA
124 AAGATAGCATA
* * * * *
47232022 TCTTGTCTTCTTGTATTGGCAGCGAAGTGGATCGAATATAGTAGATCTTGTCTCCCTGAGCAGCA
1 TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTATCTCCCTGAGCAGCA
* *
47232087 GTAGAGTAGGTCGAAGAATGTAGATCTTTTCTTCCTGTATTGGCAGCGAGGTAGATCGAAGATAG
66 GTAGAGTAGGTCGAAGAATGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
47232152 CA-A
131 CATA
*
47232155 GTCTTATCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAGCT-GATCTTATCTCTCTGA
1 -TCTTATCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAG-TAGATCTTATCTCCCTGA
47232215 AGTTACAGTA
Statistics
Matches: 166, Mismatches: 18, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
131 5 0.03
132 1 0.01
133 3 0.02
134 101 0.61
135 54 0.33
136 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (134 bp):
TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTATCTCCCTGAGCAGCA
GTAGAGTAGGTCGAAGAATGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
CATA
Found at i:47232249 original size:41 final size:40
Alignment explanation
Indices: 47232201--47232743 Score: 209
Period size: 44 Copynumber: 12.8 Consensus size: 40
47232191 AGATAGCTGA
* * *
47232201 TCTTATCTCTCTGAAGTTACAGTAGAACAGATCGCATCTAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGCAT-TAG
* * **
47232242 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-AGCAT-TAG
* *
47232285 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTGCATTCAG
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGCATT-AG
* * * ** *
47232327 TCTTATCTCTCTAAAGTTGCAGT-GAAGTAGATAGAAGAAACCAA
1 TCTTATCTCTCTGAAGTTGCAGTAG-AGCAGAT---AG-CATTAG
* * * *
47232371 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACA-TAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---AGCATTAG
* * *
47232414 ATCTTATCTATCTAAAGTTGCAGTAGAGCAGATCA-CATCCAG
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT-AGCAT-TAG
* * * * ** *
47232456 TCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT---AG-CATTAG
* * * * *
47232500 TCCTATCTC-CTGAAGTTGCAGTGGAGCGGATTAAAAACA-CAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---AGCATTAG
* * *
47232542 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAG
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGCAT-TAG
* * * * * *
47232584 TCTTAT-TCCACTGAAGTTGCAGTGGAGCAGAAAGAAAAAACTAA
1 TCTTATCT-CTCTGAAGTTGCAGTAGAGCAGATAG----CATTAG
* * * * * *
47232628 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACA-CAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---AGCATTAG
*
47232671 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCTAG
1 -TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGCAT-TAG
* * *
47232713 TCTTATCTCACTGAAGTTGTAGTGGAGCAGA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
47232744 CGGAAGAAAC
Statistics
Matches: 381, Mismatches: 85, Indels: 72
0.71 0.16 0.13
Matches are distributed among these distances:
40 8 0.02
41 142 0.37
42 14 0.04
43 38 0.10
44 169 0.44
45 9 0.02
48 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (40 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGCATTAG
Found at i:47232290 original size:85 final size:85
Alignment explanation
Indices: 47232199--47232832 Score: 459
Period size: 85 Copynumber: 7.4 Consensus size: 85
47232189 GAAGATAGCT
* * * * * *
47232199 GATCTTATCTCTCTGAAGTTACAGTAGAACAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAAACCAGTCTTATCTCCCTGAAGTTGCAG
*
47232264 TGGAGCAGATTAAAAATATA
66 TGGAGCAGATTAAAAATACA
* * * ** * *
47232284 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAAACCAGTCTTATCTCCCTGAAGTTGCAG
* *
47232349 TGAAGTAGA-TAGAAGAA-ACCA
66 TGGAGCAGATTA-AA-AATA-CA
* * * * * ** *
47232370 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TAGAAAC-CAG-TCTTATCTCCCTGAAGTTG
* * * *
47232434 CAGTAGAGCAGA-T-CACATCCA
63 CAGTGGAGCAGATTAAAAATACA
* * * * *
47232455 G-TCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCCTATCT-CCTGAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT---AGAAACCAGTCTTATCTCCCTGAAGTTG
* *
47232518 CAGTGGAGCGGATTAAAAACACA
63 CAGTGGAGCAGATTAAAAATACA
* * * *
47232541 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTAT-TCCACTGAAGTTGCA
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAAACCAGTCTTATCTCC-CTGAAGTTGCA
* *
47232605 GTGGAGCAGA-AAGAAAAAACTA
65 GTGGAGCAGATTA-AAAATAC-A
* * * * * *
47232627 -ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TAGAAAC-CAG-TCTTATCTCCCTGAAGTTG
* **
47232691 CAGTAGAGCAGATT--GCAT-CTA
63 CAGTGGAGCAGATTAAAAATAC-A
* * * * * * * * *
47232712 G-TCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCCTATCTTCTTGAATTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA---TAGAAACCAGTCTTATCTCCCTGAAGTTG
*
47232776 CAGTGGAGCAGATTAAAAACACA
63 CAGTGGAGCAGATTAAAAATACA
47232799 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
47232833 CGTATCAGAC
Statistics
Matches: 427, Mismatches: 92, Indels: 60
0.74 0.16 0.10
Matches are distributed among these distances:
83 1 0.00
84 33 0.08
85 243 0.57
86 19 0.04
87 46 0.11
88 83 0.19
89 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (85 bp):
GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATAGAAACCAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTAAAAATACA
Found at i:47232387 original size:129 final size:129
Alignment explanation
Indices: 47232245--47232834 Score: 853
Period size: 129 Copynumber: 4.6 Consensus size: 129
47232235 CATCTAGTCT
* * *
47232245 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * *
47232310 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGTAGATAGAAGAAACCAATCT
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
* * *
47232374 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
47232439 GAGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGT-AGAGCAGATAGAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGA-AGCAGATAGAAGAAACCAATCC
*
47232503 TATCT-CCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
47232567 GAGCAGATCGCATCCAGTCTTAT-TCCACTGAAGTTGCAGTGGAGCAGAAAGAAAAAACTAATCC
66 GAGCAGATCGCATCCAGTCTTATCT-CACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
47232631 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * **
47232696 GAGCAGATTGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
* * * *
47232760 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
47232825 GAGCAGATCG
66 GAGCAGATCG
47232835 TATCAGACTT
Statistics
Matches: 419, Mismatches: 37, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
127 1 0.00
128 114 0.27
129 303 0.72
130 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (129 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
Found at i:47232717 original size:257 final size:257
Alignment explanation
Indices: 47232245--47232834 Score: 876
Period size: 257 Copynumber: 2.3 Consensus size: 257
47232235 CATCTAGTCT
* *
47232245 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * * * *
47232310 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGTAGATAGAAGAAACCAATCTT
65 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGAAAGAAAAAACCAATCCT
*
47232375 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTAG
130 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTATCTAAAGTTGCAGTAG
* * *
47232440 AGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCC
195 AGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
47232503 TATCTCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTAG
1 TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
* * *
47232568 AGCAGATCGCATCCAGTCTTAT-TCCACTGAAGTTGCAGTGGAGCAGAAAGAAAAAACTAATCCT
66 AGCAGATCGCATCCAGTCTTATCT-CACTAAAGTTGCAGTGAAGCAGAAAGAAAAAACCAATCCT
* *
47232632 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
130 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTATCTAAAGTTGCAGTAG
** * * * * *
47232697 AGCAGATTGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
195 AGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
47232760 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
47232825 GAGCAGATCG
65 GAGCAGATCG
47232835 TATCAGACTT
Statistics
Matches: 298, Mismatches: 32, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
256 1 0.00
257 226 0.76
258 71 0.24
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (257 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGAAAGAAAAAACCAATCCTA
TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTATCTAAAGTTGCAGTAGA
GCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
Found at i:47232946 original size:44 final size:43
Alignment explanation
Indices: 47232898--47233046 Score: 109
Period size: 44 Copynumber: 3.2 Consensus size: 43
47232888 TATCTCCTTA
47232898 AAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATATACCTCTG
1 AAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATAT-CCTCTG
* ** * *** * * *
47232942 AAGTTGCAGTAGGTTAAATTAGATCTTATCATGTCAAACCTTATCTCCCTG
1 AAGTTGCAGT--G-T--AGTAGA--TTAAAACGAGGAATCATATC-CTCTG
*
47232993 AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATGCCTCTG
1 AAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATAT-CCTCTG
47233037 AAGTTGCAGT
1 AAGTTGCAGT
47233047 AGGTTAAATT
Statistics
Matches: 75, Mismatches: 21, Indels: 18
0.66 0.18 0.16
Matches are distributed among these distances:
44 35 0.47
45 1 0.01
46 5 0.07
47 1 0.01
48 1 0.01
49 6 0.08
50 1 0.01
51 25 0.33
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (43 bp):
AAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATATCCTCTG
Found at i:47232953 original size:257 final size:255
Alignment explanation
Indices: 47232245--47232908 Score: 850
Period size: 257 Copynumber: 2.6 Consensus size: 255
47232235 CATCTAGTCT
* *
47232245 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
47232310 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGT-AGATAGAAGAAACCAATCT
65 GAGCAGATCGCA-TCAGTCTTATTTCT-TAAAGTTGCAGTG-AGTCAGATAGAAGAAACTAATCC
* * *
47232374 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTA
127 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
47232439 GAGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCC
192 GAGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
47232503 TATCTCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTAG
1 TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
* * * * *
47232568 AGCAGATCGCATCCAGTCTTATTCCACTGAAGTTGCAGTGGAG-CAGAAAGAAAAAACTAATCCT
66 AGCAGATCGCAT-CAGTCTTATTTC-TTAAAGTTGCAGT-GAGTCAGATAGAAGAAACTAATCCT
47232632 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
128 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
** * * * * *
47232697 AGCAGATTGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
193 AGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
47232760 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *** * **
47232825 GAGCAGATCGTATCAGACTTTATTTTCTTAAAGACACAGT-AGTCAAGTTA-AAGCTACTAATCC
65 GAGCAGATCGCATCAGTC-TTA-TTTCTTAAAGTTGCAGTGAGTC-AGATAGAAGAAACTAATCC
* *
47232888 TATCTCCTTAAAGTTGCAGTG
127 TATCTCCCTGAAGTTGCAGTG
47232909 TAGTAGATTA
Statistics
Matches: 351, Mismatches: 46, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
256 3 0.01
257 257 0.73
258 88 0.25
259 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (255 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCGCATCAGTCTTATTTCTTAAAGTTGCAGTGAGTCAGATAGAAGAAACTAATCCTATC
TCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC
AGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
Found at i:47232999 original size:51 final size:51
Alignment explanation
Indices: 47232939--47233097 Score: 145
Period size: 51 Copynumber: 3.3 Consensus size: 51
47232929 TCATATACCT
*
47232939 CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGTCAAACCTTATCTCC
1 CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGACAAACCTTATCTCC
** ** * ** * * *
47232990 CTGAAGTTGCAGT--G-T--AGCAGA--TTAAAACGAGGAATCATATGC-CT
1 CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGACAAACCTTAT-CTCC
*
47233034 CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGCCAAACCTTATCTCC
1 CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGACAAACCTTATCTCC
47233085 CTGAAGTTGCAGT
1 CTGAAGTTGCAGT
47233098 GGAGCAGGTT
Statistics
Matches: 77, Mismatches: 22, Indels: 18
0.66 0.19 0.15
Matches are distributed among these distances:
44 25 0.32
45 1 0.01
46 5 0.06
47 1 0.01
48 1 0.01
49 5 0.06
50 1 0.01
51 38 0.49
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (51 bp):
CTGAAGTTGCAGTAGGTTAAATTAGATCTTATCATGACAAACCTTATCTCC
Found at i:47233051 original size:95 final size:95
Alignment explanation
Indices: 47232888--47233110 Score: 383
Period size: 95 Copynumber: 2.3 Consensus size: 95
47232878 CTACTAATCC
* * *
47232888 TATCTCCTTAAAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
*
47232953 GGTTAAATTAGATCTTATCATGTCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
*
47232983 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATGCCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
47233048 GGTTAAATTAGATCTTATCATGCCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* *
47233078 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAA
47233111 GATACAAGTC
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 121 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (95 bp):
TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
GGTTAAATTAGATCTTATCATGCCAAACCT
Found at i:47233133 original size:95 final size:95
Alignment explanation
Indices: 47232888--47233141 Score: 325
Period size: 95 Copynumber: 2.7 Consensus size: 95
47232878 CTACTAATCC
* * * * ** * *
47232888 TATCTCCTTAAAGTTGCAGTGTAGTAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATGCCCCTGAAGTTGCAGTA
*
47232953 GGTTAAATTAGATCTTATCATGTCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* ** *
47232983 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATGCCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATGCCCCTGAAGTTGCAGTA
47233048 GGTTAAATTAGATCTTATCATGCCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* *
47233078 TATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAA-GATACAAGTCTTAT-CTCCCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA-ACAA-TCATATGC-CCCTGAAGTTGCA
47233140 GT
63 GT
47233142 GGAGCAGACT
Statistics
Matches: 145, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
93 2 0.01
94 6 0.04
95 137 0.94
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (95 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATGCCCCTGAAGTTGCAGTA
GGTTAAATTAGATCTTATCATGCCAAACCT
Found at i:47233184 original size:44 final size:44
Alignment explanation
Indices: 47233079--47233169 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
47233069 GCCAAACCTT
** * *
47233079 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGATACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTC
47233123 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA-ATCACAAATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAT-ACAAATCTC
47233167 ATC
1 ATC
47233170 CCCATAGAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTC
Found at i:47234870 original size:9 final size:9
Alignment explanation
Indices: 47234853--47234892 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
47234843 TACTATGTAA
*
47234853 TTTAAATTG
1 TTTATATTG
47234862 TTTATATTG
1 TTTATATTG
*
47234871 TTTAT-TTC
1 TTTATATTG
47234879 TTTATATTG
1 TTTATATTG
47234888 TTTAT
1 TTTAT
47234893 TTCAAGACTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.68
Consensus pattern (9 bp):
TTTATATTG
Found at i:47234884 original size:17 final size:17
Alignment explanation
Indices: 47234862--47234895 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47234852 ATTTAAATTG
47234862 TTTATATTGTTTATTTC
1 TTTATATTGTTTATTTC
47234879 TTTATATTGTTTATTTC
1 TTTATATTGTTTATTTC
47234896 AAGACTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTATATTGTTTATTTC
Found at i:47238385 original size:13 final size:13
Alignment explanation
Indices: 47238367--47238391 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47238357 GCAATTCTGC
47238367 ATATGGAATGGAG
1 ATATGGAATGGAG
47238380 ATATGGAATGGA
1 ATATGGAATGGA
47238392 ATGGAGAGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (13 bp):
ATATGGAATGGAG
Found at i:47249527 original size:15 final size:15
Alignment explanation
Indices: 47249509--47249537 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47249499 ATCATTCTAA
47249509 AAAAATAAAATAAAT
1 AAAAATAAAATAAAT
47249524 AAAAATAAAATAAA
1 AAAAATAAAATAAA
47249538 ATTCTGCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAATAAAATAAAT
Found at i:47250010 original size:44 final size:44
Alignment explanation
Indices: 47249942--47250029 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
47249932 TAGATCACAT
*
47249942 CAGATTGAAGCTAGAAATCTTATCTCCCTCAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCCTATCTCCCTCAGATTACAGCGGAG
* * *
47249986 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCCTATCTCCCTCAGATTACAGCGGAG
47250030 TGGATTAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
CAGATTGAAGCTAGAAATCCTATCTCCCTCAGATTACAGCGGAG
Found at i:47250072 original size:142 final size:142
Alignment explanation
Indices: 47249816--47250238 Score: 666
Period size: 142 Copynumber: 3.0 Consensus size: 142
47249806 AAGATAACAG
* * * * ** * **
47249816 ATCTTATCTCACTGAGAATACAACGGATCAGATCAAAGCTAGTAATTCTATCTCTTTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
47249881 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
47249946 TTGAAGCTAGAA
131 TTGAAGCTAGAA
*
47249958 ATCTTATCTCCCTCAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
47250023 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
*
47250088 TTGAAGCCAGAA
131 TTGAAGCTAGAA
* *
47250100 ATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * * *
47250165 ATTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
*
47250230 ATGAAGCTA
131 TTGAAGCTA
47250239 CAACAACAAA
Statistics
Matches: 257, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
142 257 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (142 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
TTGAAGCTAGAA
Found at i:47250152 original size:44 final size:44
Alignment explanation
Indices: 47250084--47250177 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
47250074 TAGATCGCAT
* *
47250084 CAGATTGAAGCCAGAAATCTTATCTCCTTGAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGGAG
* * *
47250128 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACATTGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGGAG
*
47250172 CGGATT
1 CAGATT
47250178 AAAACAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGGAG
Found at i:47250196 original size:44 final size:44
Alignment explanation
Indices: 47250099--47250210 Score: 111
Period size: 44 Copynumber: 2.5 Consensus size: 44
47250089 TGAAGCCAGA
* * * *
47250099 AATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAACAAGT
* * *
47250143 AATCCTATCTCCCTGAGATTACATTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAC-AAGT
* *
47250187 GATCTTATCTCTCTGA-AGTTACAG
1 AATCTTATCTCCCTGAGA-TTACAG
47250211 CAGAGTAGAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
43 1 0.02
44 52 0.95
45 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAACAAGT
Found at i:47255473 original size:15 final size:15
Alignment explanation
Indices: 47255445--47255486 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
47255435 TATATTAAGA
47255445 ATATTATTTAATTAT
1 ATATTATTTAATTAT
* *
47255460 ATATTATTTTATTAA
1 ATATTATTTAATTAT
47255475 AT-TGTATTTAAT
1 ATAT-TATTTAAT
47255487 CAATAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
ATATTATTTAATTAT
Found at i:47255496 original size:30 final size:31
Alignment explanation
Indices: 47255425--47255501 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
47255415 ATTCATATTT
*
47255425 TAATAATTATTATATTAAGAATATTATTTAA
1 TAATAATTATTTTATTAAGAATATTATTTAA
*
47255456 TTATATATTATTTTATT-A-AAT-TGTATTTAA
1 TAATA-ATTATTTTATTAAGAATAT-TATTTAA
47255486 TCAATAATTATGTTTA
1 T-AATAATTAT-TTTA
47255502 AATAAGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 1 0.03
30 16 0.41
31 12 0.31
32 10 0.26
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (31 bp):
TAATAATTATTTTATTAAGAATATTATTTAA
Found at i:47257629 original size:22 final size:21
Alignment explanation
Indices: 47257588--47257633 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
47257578 TACGTGCATA
* *
47257588 TATTTTTATGATATACATACAT
1 TATTTTTATAACATACATAC-T
*
47257610 TATTTTTATAACATATATACT
1 TATTTTTATAACATACATACT
47257631 TAT
1 TAT
47257634 ATATTTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTTTTATAACATACATACT
Found at i:47262022 original size:11 final size:12
Alignment explanation
Indices: 47262006--47262034 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47261996 CCCCTAATTA
47262006 AAAGTG-TTGAG
1 AAAGTGATTGAG
47262017 AAAGTGATTGAG
1 AAAGTGATTGAG
47262029 AAAGTG
1 AAAGTG
47262035 GTGTTCAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.34, T:0.24
Consensus pattern (12 bp):
AAAGTGATTGAG
Found at i:47266322 original size:21 final size:21
Alignment explanation
Indices: 47266293--47266336 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
47266283 TAATCATATG
* *
47266293 TTTAGATTTGTTTTTTTTTTAA
1 TTTAGATTT-ATTATTTTTTAA
47266315 TTTA-ATTTATTATTTTTTAA
1 TTTAGATTTATTATTTTTTAA
47266335 TT
1 TT
47266337 ATTCACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 4 0.20
22 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTAGATTTATTATTTTTTAA
Found at i:47272698 original size:18 final size:16
Alignment explanation
Indices: 47272651--47272702 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
47272641 GGCAACCCAA
47272651 TTATTATTATTATTATTT
1 TTATT-TTATT-TTATTT
*
47272669 TTACTTTA-TTTATTACT
1 TTATTTTATTTTATT--T
47272686 TTATTTTATTTTATTT
1 TTATTTTATTTTATTT
47272702 T
1 T
47272703 ACTTATTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 5 0.17
16 3 0.10
17 11 0.38
18 10 0.34
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:47272884 original size:44 final size:44
Alignment explanation
Indices: 47272836--47272925 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
47272826 ATTGACCGAG
47272836 TTCATTGCCATCATTTGCGATCGACAGTAACAACACGGGGAGTT
1 TTCATTGCCATCATTTGCGATCGACAGTAACAACACGGGGAGTT
*
47272880 TTCATTGCCATCATTTGCGATCGATAGTAACAACACGGGGAGTT
1 TTCATTGCCATCATTTGCGATCGACAGTAACAACACGGGGAGTT
47272924 TT
1 TT
47272926 TCTAAACTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
TTCATTGCCATCATTTGCGATCGACAGTAACAACACGGGGAGTT
Found at i:47273797 original size:10 final size:10
Alignment explanation
Indices: 47273765--47273798 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
47273755 GTATATTCCT
*
47273765 AAAGTAAAAA
1 AAAGAAAAAA
47273775 AAAGAGAAAAA
1 AAAGA-AAAAA
47273786 AAAGAAAAAA
1 AAAGAAAAAA
47273796 AAA
1 AAA
47273799 TAATTTGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:47280965 original size:29 final size:29
Alignment explanation
Indices: 47280920--47281058 Score: 118
Period size: 29 Copynumber: 4.7 Consensus size: 29
47280910 TCCGATTCTA
47280920 TTATATGTGAAGCCTTTGTGGCGAAATATG
1 TTATATG-GAAGCCTTTGTGGCGAAATATG
* * *
47280950 TTAT-TTGAGAGCCTTTGTGGTGGAATATG
1 TTATATGGA-AGCCTTTGTGGCGAAATATG
* * * * *
47280979 TTATATGGAAGTCATTGTGGCTAATTCTG
1 TTATATGGAAGCCTTTGTGGCGAAATATG
* * * * *
47281008 TTATGTGTGACGCCTTTGTAGCGGAATATA
1 TTATATG-GAAGCCTTTGTGGCGAAATATG
47281038 TTATATGGGAAGCCTTTGTGG
1 TTATAT-GGAAGCCTTTGTGG
47281059 GTGATTCTGT
Statistics
Matches: 81, Mismatches: 24, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
28 2 0.02
29 42 0.52
30 36 0.44
31 1 0.01
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (29 bp):
TTATATGGAAGCCTTTGTGGCGAAATATG
Found at i:47280985 original size:59 final size:59
Alignment explanation
Indices: 47280918--47281058 Score: 167
Period size: 59 Copynumber: 2.4 Consensus size: 59
47280908 TGTCCGATTC
* * *
47280918 TATTATATGTGAAGCCTTTGTGGCGAAATATGTTATTTGAGA-GCCTTTGTGGTGGAATA
1 TATTATATG-GAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
* * * * * * *
47280977 TGTTATATGGAAGTCATTGTGGCTAATTCTGTTATGTGTGACGCCTTTGTAGCGGAATA
1 TATTATATGGAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
47281036 TATTATATGGGAAGCCTTTGTGG
1 TATTATAT-GGAAGCCTTTGTGG
47281059 GTGATTCTGT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
58 25 0.37
59 30 0.45
60 12 0.18
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (59 bp):
TATTATATGGAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
Found at i:47281072 original size:30 final size:30
Alignment explanation
Indices: 47280920--47281084 Score: 119
Period size: 30 Copynumber: 5.6 Consensus size: 30
47280910 TCCGATTCTA
*
47280920 TTATATGTGAAGCCTTTGTGGCG-AAATATG
1 TTATATGTGAAGCCTTTGTGG-GTGAATATG
47280950 TTAT-T-TGAGAGCCTTTGT-GGTGGAATATG
1 TTATATGTGA-AGCCTTTGTGGGT-GAATATG
* * * *
47280979 TTATATG-GAAGTCATTGTGGCT-AATTCTG
1 TTATATGTGAAGCCTTTGTGGGTGAA-TATG
* * * *
47281008 TTATGTGTGACGCCTTTGTAGCG-GAATATA
1 TTATATGTGAAGCCTTTGT-GGGTGAATATG
* * *
47281038 TTATATGGGAAGCCTTTGTGGGTGATTCTG
1 TTATATGTGAAGCCTTTGTGGGTGAATATG
*
47281068 TTATATGTGATGCCTTT
1 TTATATGTGAAGCCTTT
47281085 TTGGCTATCT
Statistics
Matches: 102, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
27 1 0.01
28 6 0.06
29 38 0.37
30 54 0.53
31 3 0.03
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (30 bp):
TTATATGTGAAGCCTTTGTGGGTGAATATG
Found at i:47291834 original size:18 final size:18
Alignment explanation
Indices: 47291811--47291847 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47291801 GAAAATAAAG
47291811 AATATAAAATAGAAAATA
1 AATATAAAATAGAAAATA
*
47291829 AATATAAAATATAAAATA
1 AATATAAAATAGAAAATA
47291847 A
1 A
47291848 TAAAAGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AATATAAAATAGAAAATA
Found at i:47311726 original size:152 final size:152
Alignment explanation
Indices: 47311472--47311754 Score: 424
Period size: 152 Copynumber: 1.9 Consensus size: 152
47311462 ACCATCGTTA
* * * *
47311472 ATATCAAGTCCCTTGCCTATTGGAGGGTTATGTTGACCAATGCCCTCTATTGGCGGCATCTACCA
1 ATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGCCCTCTACTGGCAGCATCTACCA
* * *
47311537 TACTCATTTCTTTAGGCTTCAAGTCCTCATAGAAGTATTGGAGAAGAGACTCTTCTGTTATCCCA
66 TACTCATTTCTATAGGCTTCAAGCCCTCATAAAAGTATTGGAGAAGAGACTCTTCTGTTATCCCA
47311602 TGAGTATTCGTAACCATTATCG
131 TGAGTATTCGTAACCATTATCG
* * *
47311624 ATATCAACTCTCTTTCCTATTGGAGGGTCATGTTGACCAATGCCCTCTACTGGCAGCATCTAGCA
1 ATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGCCCTCTACTGGCAGCATCTACCA
* * * *
47311689 TACTCATTT-TAATGGGTTTTAAGCCCTGATAAAAGTATTGGAGAAGAGACTCTTCTGTTATCCC
66 TACTCATTTCT-ATAGGCTTCAAGCCCTCATAAAAGTATTGGAGAAGAGACTCTTCTGTTATCCC
47311753 AT
130 AT
47311755 TTTATGGGTA
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
151 1 0.01
152 115 0.99
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (152 bp):
ATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGCCCTCTACTGGCAGCATCTACCA
TACTCATTTCTATAGGCTTCAAGCCCTCATAAAAGTATTGGAGAAGAGACTCTTCTGTTATCCCA
TGAGTATTCGTAACCATTATCG
Found at i:47315088 original size:23 final size:21
Alignment explanation
Indices: 47315053--47315095 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
47315043 AAATGTTTTA
47315053 AATTTAATCTAAACCATTTATAT
1 AATTTAATCTAAA--ATTTATAT
* *
47315076 AATTTGATTTAAAATTTATA
1 AATTTAATCTAAAATTTATA
47315096 AAATCCTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (21 bp):
AATTTAATCTAAAATTTATAT
Found at i:47318552 original size:18 final size:20
Alignment explanation
Indices: 47318529--47318572 Score: 65
Period size: 18 Copynumber: 2.2 Consensus size: 20
47318519 TGTTATGTAC
47318529 AAAAAATTAAAT-AAA-ACA
1 AAAAAATTAAATGAAATACA
47318547 AAAAAATTAAATGAAATTACA
1 AAAAAATTAAATGAAA-TACA
47318568 AAAAA
1 AAAAA
47318573 CAAATAGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.52
19 3 0.13
21 8 0.35
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (20 bp):
AAAAAATTAAATGAAATACA
Found at i:47323348 original size:5 final size:5
Alignment explanation
Indices: 47323338--47323367 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
47323328 TTTGGAATAT
47323338 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
47323368 AAGGCTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:47324356 original size:21 final size:21
Alignment explanation
Indices: 47324330--47324369 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47324320 TTCGGGTGGA
*
47324330 TCAGCTCTTTTGAGCTTCTTT
1 TCAGCTCTTATGAGCTTCTTT
47324351 TCAGCTCTTATGAGCTTCT
1 TCAGCTCTTATGAGCTTCT
47324370 GTTGGCGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.25, G:0.15, T:0.47
Consensus pattern (21 bp):
TCAGCTCTTATGAGCTTCTTT
Found at i:47326263 original size:105 final size:105
Alignment explanation
Indices: 47326081--47326289 Score: 400
Period size: 105 Copynumber: 2.0 Consensus size: 105
47326071 ATGAATTTGA
47326081 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
1 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
47326146 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
66 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
*
47326186 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCTATCTCAACATAACATAT
1 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
*
47326251 TTTACGTGTAACTCACCATTTCAAAGTCTCTCATACATA
66 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATA
47326290 CATATCTTGG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (105 bp):
CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
Found at i:47334901 original size:33 final size:33
Alignment explanation
Indices: 47334830--47334989 Score: 103
Period size: 33 Copynumber: 4.8 Consensus size: 33
47334820 TTTTTATATG
* * *
47334830 TAAGACCCTAACTGGGCTATGGCATTTTAATGA
1 TAAGACCATAACTGGGCTATGGCATTTGAATCA
* *
47334863 AAAGACCATAACTGGGTTATGGCACTTTGAA-CA
1 TAAGACCATAACTGGGCTATGGCA-TTTGAATCA
*** * * *
47334896 TAAGACCATGGTTGGACTATGATAGTATTT--ATAA
1 TAAGACCATAACTGGGCTATG---GCATTTGAATCA
** *
47334930 GTAAGACCATAGTTGGGCTATGGCATTCTG-ATGA
1 -TAAGACCATAACTGGGCTATGGCATT-TGAATCA
*
47334964 TAAGACCATAACTGGGTTATGGCATT
1 TAAGACCATAACTGGGCTATGGCATT
47334990 ACAAATCTAA
Statistics
Matches: 99, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
32 4 0.04
33 62 0.63
34 9 0.09
35 22 0.22
36 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (33 bp):
TAAGACCATAACTGGGCTATGGCATTTGAATCA
Found at i:47334969 original size:101 final size:101
Alignment explanation
Indices: 47334794--47334987 Score: 280
Period size: 101 Copynumber: 1.9 Consensus size: 101
47334784 GAATTGACGA
* * * * *
47334794 ATAAGACCATGGTTGGACCATGGCAATTTTTATATGTAAGACCCTAACTGGGCTATGGCATTTTA
1 ATAAGACCATGGTTGGACCATGACAATATTTATAAGTAAGACCATAACTGGGCTATGGCATTCTA
47334859 ATGAAAAGACCATAACTGGGTTATGGCACTTTGAAC
66 ATGAAAAGACCATAACTGGGTTATGGCACTTTGAAC
* * * ** *
47334895 ATAAGACCATGGTTGGACTATGATAGTATTTATAAGTAAGACCATAGTTGGGCTATGGCATTCTG
1 ATAAGACCATGGTTGGACCATGACAATATTTATAAGTAAGACCATAACTGGGCTATGGCATTCTA
*
47334960 ATGATAAGACCATAACTGGGTTATGGCA
66 ATGAAAAGACCATAACTGGGTTATGGCA
47334988 TTACAAATCT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 81 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (101 bp):
ATAAGACCATGGTTGGACCATGACAATATTTATAAGTAAGACCATAACTGGGCTATGGCATTCTA
ATGAAAAGACCATAACTGGGTTATGGCACTTTGAAC
Found at i:47340535 original size:9 final size:9
Alignment explanation
Indices: 47340518--47340548 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
47340508 TCGAGTTGAT
47340518 TCGAATAAC
1 TCGAATAAC
*
47340527 TCGATTAAC
1 TCGAATAAC
47340536 TCGAATAAC
1 TCGAATAAC
47340545 TCGA
1 TCGA
47340549 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:47343642 original size:29 final size:29
Alignment explanation
Indices: 47343607--47343673 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
47343597 GTGAATGTCT
* * *
47343607 CAACATTGGGATCAGAATGCTCAATGCCG
1 CAACATTGGGATCAAAATGCCCAAGGCCG
* **
47343636 CAACATTGAGATCAAAATGCCCAAGGTTG
1 CAACATTGGGATCAAAATGCCCAAGGCCG
47343665 CAACATTGG
1 CAACATTGG
47343674 CTAGGGAAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (29 bp):
CAACATTGGGATCAAAATGCCCAAGGCCG
Found at i:47346267 original size:4 final size:4
Alignment explanation
Indices: 47346258--47346305 Score: 96
Period size: 4 Copynumber: 12.0 Consensus size: 4
47346248 TATTAAATCA
47346258 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
47346306 ATCTATTGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:47347326 original size:42 final size:42
Alignment explanation
Indices: 47347272--47347438 Score: 194
Period size: 42 Copynumber: 4.0 Consensus size: 42
47347262 GATTTTAGGC
*
47347272 TTACG-CCTAGCAGGCTTATTGCCAGTGAAACAATATCAGACT
1 TTACGTCC-AGCAGGCTTAATGCCAGTGAAACAATATCAGACT
* * * *
47347314 TTACGTCCAGCAGGCCTAATGCCAGTGAAATAATTTTAGACT
1 TTACGTCCAGCAGGCTTAATGCCAGTGAAACAATATCAGACT
* * * * *
47347356 TTAAGTCTAGCAAGCTTAATGCCAGTGAAAAAATATCAAACT
1 TTACGTCCAGCAGGCTTAATGCCAGTGAAACAATATCAGACT
* * *
47347398 TTACGTCTAGCAGGCTTAATGCCGGTGAAAC-ATTTCAGACT
1 TTACGTCCAGCAGGCTTAATGCCAGTGAAACAATATCAGACT
47347439 ATATGTCTAG
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 8 0.08
42 95 0.90
43 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (42 bp):
TTACGTCCAGCAGGCTTAATGCCAGTGAAACAATATCAGACT
Found at i:47347419 original size:84 final size:83
Alignment explanation
Indices: 47347278--47347454 Score: 246
Period size: 84 Copynumber: 2.1 Consensus size: 83
47347268 AGGCTTACGC
* * * *
47347278 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGTCCAGCAGGCCTAATGCCAGTGAA
1 CTAGCAAGCTTAATGCCAGTGAAAAAATATCAAACTTTACGTCCAGCAGGCCTAATGCCAGTGAA
* *
47347343 ATAATTTTAGACTTTAAGT
66 A-AATTTCAGACTATAAGT
* * *
47347362 CTAGCAAGCTTAATGCCAGTGAAAAAATATCAAACTTTACGTCTAGCAGGCTTAATGCCGGTGAA
1 CTAGCAAGCTTAATGCCAGTGAAAAAATATCAAACTTTACGTCCAGCAGGCCTAATGCCAGTGAA
* *
47347427 ACATTTCAGACTATATGT
66 AAATTTCAGACTATAAGT
47347445 CTAGCAAGCT
1 CTAGCAAGCT
47347455 AAGTGTCGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
83 23 0.28
84 59 0.72
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (83 bp):
CTAGCAAGCTTAATGCCAGTGAAAAAATATCAAACTTTACGTCCAGCAGGCCTAATGCCAGTGAA
AAATTTCAGACTATAAGT
Found at i:47354614 original size:41 final size:42
Alignment explanation
Indices: 47354472--47354660 Score: 174
Period size: 42 Copynumber: 4.5 Consensus size: 42
47354462 GGCTTAGCGC
* * *
47354472 CTAGTAGGCTT-ATCGCCAGTGAAATAATTTCAGACTTTACGT
1 CTAGCAGGCTTAAT-GCCGGTGAAACAATTTCAGACTTTACGT
* * *
47354514 CTAGCAGGCTTAATGCCAGTAAAACAATATCAGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGT
* *
47354556 CTAGCAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGT
* * * * * *
47354597 CTAGCAGG-ATAAGTGCCGGTG-TACTAA-ATCAGGCTTTAAGC
1 CTAGCAGGCTTAA-TGCCGGTGAAAC-AATTTCAGACTTTACGT
47354638 CTAGCAGGC-TAAGTGCCGGTGAA
1 CTAGCAGGCTTAA-TGCCGGTGAA
47354661 TCTATTTAAA
Statistics
Matches: 124, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
40 5 0.04
41 58 0.47
42 59 0.48
43 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (42 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGT
Found at i:47363434 original size:539 final size:539
Alignment explanation
Indices: 47362417--47363482 Score: 1623
Period size: 539 Copynumber: 2.0 Consensus size: 539
47362407 TTGACCTAAT
* * *
47362417 CATCAGTAATAACTTTTGTACCTACAGAAGTGTTAACCTGAACATCTCCTATTCCCTTGGCTTCA
1 CATCAGTAATAACTTTTGTACCTACAGAAGTGCTAACCTAAACATCCCCTATTCCCTTGGCTTCA
* * *
47362482 ATGATCTGGCCATTTCAAACTCTGATTCTCGAACTGAATAATCTATCAATCTCCTTGAACATGCT
66 ATGATCTGGCCATTTCAAACTCTGATTCTCAAACTGAAGAATATATCAATCTCCTTGAACATGCT
* * *
47362547 TTCATCTGAAACCATATGGTTTGTACAACCACTATCAATCAACTAGTTTTTCTTGTCTTGGTTGT
131 TTCATCTGAAACCATATGGTTTGTACAACCACTATCAATCAACCAGTTTTTCTTATCTTAGTTGT
*
47362612 TGACTGTGAAGCATGAAGCAGTGAATGTGAGCTCCTCCTAAGCTTGATTTTCTTCAGCACTTGAG
196 TGACTGTGAAGCATGAAGCAGTGAATGTGAGCTCCTCCTAAGATTGATTTTCTTCAGCACTTGAG
* * *
47362677 CCTAATTAGACTACTATTGTTGTTACTGCACTTTGTTTTTATAAATTCTAAAATCGTGGCCGAAT
261 CCTAATTAGACTACTATTGTTGCTACTGCACTTTGTTTTTACAAATTCTAAAATCGTGGCCAAAT
* *** * * *
47362742 TGCTTACAGTTTTTACACTGTGCACCAATTTTTATCCAACAAAACTTTTATGAATGACCCATCTT
326 TGCTTACAATTTTTACACTACACACCAAGTCTTATCCAACAAAACTTTTATAAATGACCCATCTT
* * * *
47362807 TTTGCAATTCGATCATGGTGGATACTTTTTCTTTCCACCATCTCTTTTTTCCCTTTCTCTTGCTT
391 TTTGCAATCCAAGCATGGTGGATACTTTTTCTTTCCACCATCTCTTTTTACCCTTTCTCTTGCTT
* * * * * *
47362872 GATTCCTTTTCTTCTTGCCTTTGTTTCTTGAAGAGCATGGAGTTTCCTTGTTTCTCGCTTGGTAA
456 GATGCCATTTCTTCTTGCCTTTGTTGCTTGAAAAGCATAGAGTTTCCTTGTTTCTCACTTGGTAA
47362937 GCACCTTCTACGTGAAAGA
521 GCACCTTCTACGTGAAAGA
* *
47362956 CATCAGTAATAACTTTTGTACCTATAGAAGTGCTAACCTAAACGTCCCC-ATTTCCCTTGGCTTC
1 CATCAGTAATAACTTTTGTACCTACAGAAGTGCTAACCTAAACATCCCCTA-TTCCCTTGGCTTC
* * * *
47363020 AATGATCTGGCCATTTCCAAGTCTGATTCTCAAACTGAAGGATATGTCAATCTCCTTGAACATGC
65 AATGATCTGGCCATTTCAAACTCTGATTCTCAAACTGAAGAATATATCAATCTCCTTGAACATGC
* * *
47363085 TTTCATCTGAAACCATATGGTTTGTACAACCTCTGTCAATCAACCATTTTTTCTTATCTTAGTTG
130 TTTCATCTGAAACCATATGGTTTGTACAACCACTATCAATCAACCAGTTTTTCTTATCTTAGTTG
* * * *
47363150 TTGATTTTGAAGCATGAAGTAGTGAAT-TCGAGCTCCTCCTGAGATTGATTTTCTTCAGCACTTG
195 TTGACTGTGAAGCATGAAGCAGTGAATGT-GAGCTCCTCCTAAGATTGATTTTCTTCAGCACTTG
* * * *
47363214 AGCCTGATTAGACTGCTATTGTTGCTGCTGCACTTTGTTTTTACAAATTCTAAAATTGTGGCCAA
259 AGCCTAATTAGACTACTATTGTTGCTACTGCACTTTGTTTTTACAAATTCTAAAATCGTGGCCAA
* * * *
47363279 ATTGCTTACAATTTTTACACTACACACCAGGTCTTGTCCAGCAAAACTTTTCTAAATGACCCATC
324 ATTGCTTACAATTTTTACACTACACACCAAGTCTTATCCAACAAAACTTTTATAAATGACCCATC
* *
47363344 TTTTTGCAATCCAAGCATGGTGGATACTTTTTCTTTTCACCATCTCTTTTTAGCCTTTCTCTTGC
389 TTTTTGCAATCCAAGCATGGTGGATACTTTTTCTTTCCACCATCTCTTTTTACCCTTTCTCTTGC
47363409 TTGATGCCATTTCTTCTTGCCTTTGTTGCTTGAAAAGCATAGAGTTTCCTTGTTTCTCACTTGGT
454 TTGATGCCATTTCTTCTTGCCTTTGTTGCTTGAAAAGCATAGAGTTTCCTTGTTTCTCACTTGGT
47363474 AAGCACCTT
519 AAGCACCTT
47363483 TTGTGTGCCC
Statistics
Matches: 472, Mismatches: 53, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
538 2 0.00
539 470 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (539 bp):
CATCAGTAATAACTTTTGTACCTACAGAAGTGCTAACCTAAACATCCCCTATTCCCTTGGCTTCA
ATGATCTGGCCATTTCAAACTCTGATTCTCAAACTGAAGAATATATCAATCTCCTTGAACATGCT
TTCATCTGAAACCATATGGTTTGTACAACCACTATCAATCAACCAGTTTTTCTTATCTTAGTTGT
TGACTGTGAAGCATGAAGCAGTGAATGTGAGCTCCTCCTAAGATTGATTTTCTTCAGCACTTGAG
CCTAATTAGACTACTATTGTTGCTACTGCACTTTGTTTTTACAAATTCTAAAATCGTGGCCAAAT
TGCTTACAATTTTTACACTACACACCAAGTCTTATCCAACAAAACTTTTATAAATGACCCATCTT
TTTGCAATCCAAGCATGGTGGATACTTTTTCTTTCCACCATCTCTTTTTACCCTTTCTCTTGCTT
GATGCCATTTCTTCTTGCCTTTGTTGCTTGAAAAGCATAGAGTTTCCTTGTTTCTCACTTGGTAA
GCACCTTCTACGTGAAAGA
Found at i:47375723 original size:33 final size:32
Alignment explanation
Indices: 47375686--47375757 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
47375676 ATACAGCATT
47375686 ATCATTAGATAGTTTT-ATTTGTTTTAGTCACTC
1 ATCATTAGATAGTTTTCA--TGTTTTAGTCACTC
* *
47375719 ATCATTAGTTTGTTTTCATGTTTTAGTCACTC
1 ATCATTAGATAGTTTTCATGTTTTAGTCACTC
*
47375751 GTCATTA
1 ATCATTA
47375758 ATTTGGCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 20 0.57
33 14 0.40
34 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.12, T:0.51
Consensus pattern (32 bp):
ATCATTAGATAGTTTTCATGTTTTAGTCACTC
Found at i:47375858 original size:12 final size:13
Alignment explanation
Indices: 47375835--47375870 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
47375825 GGTCTCTCAT
47375835 TTTATCTTTTTAA
1 TTTATCTTTTTAA
47375848 TTTAT-TTTTTAA
1 TTTATCTTTTTAA
*
47375860 TTTTTCTTTTT
1 TTTATCTTTTT
47375871 TCTAAGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATCTTTTTAA
Found at i:47386971 original size:40 final size:40
Alignment explanation
Indices: 47386871--47387135 Score: 268
Period size: 40 Copynumber: 6.7 Consensus size: 40
47386861 GCTCCTCGTT
* * * *
47386871 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
47386911 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
47386950 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
47386990 TGAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
47387030 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
47387070 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
47387111 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
47387136 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 26, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
39 39 0.20
40 139 0.72
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47387095 original size:120 final size:119
Alignment explanation
Indices: 47386873--47387135 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 119
47386863 TCCTCGTTCA
* * *
47386873 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * * *
47386938 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCATG
66 TAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCA-C
* * * *
47386992 AATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-A
** * ** * *
47387057 TTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
47387112 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
47387136 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 75 0.62
121 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:47387144 original size:41 final size:41
Alignment explanation
Indices: 47387067--47387144 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47387057 TTTGTATCTC
* * *
47387067 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47387108 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47387145 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47394963 original size:40 final size:40
Alignment explanation
Indices: 47394863--47395127 Score: 277
Period size: 40 Copynumber: 6.7 Consensus size: 40
47394853 GCTCCTCGTT
* * * *
47394863 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
47394903 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
47394942 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
47394982 TGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
47395022 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
47395062 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
47395103 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
47395128 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 24, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 141 0.72
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:47395087 original size:80 final size:80
Alignment explanation
Indices: 47394830--47395127 Score: 254
Period size: 80 Copynumber: 3.7 Consensus size: 80
47394820 AAATCACGTA
* ** * * *
47394830 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
47394892 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
47394908 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
**
47394971 AATAACTCGCATGAATG
64 AATAACTCGCACAAATG
* *
47394988 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
47395052 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
47395068 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
47395128 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 49 0.27
80 105 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:47395136 original size:41 final size:41
Alignment explanation
Indices: 47395059--47395136 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47395049 TTTGTATCTC
* * *
47395059 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47395100 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47395137 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47399946 original size:22 final size:22
Alignment explanation
Indices: 47399921--47400000 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 22
47399911 TTTACCTTTG
47399921 ATTTTAATATTAAAATAAAAAT
1 ATTTTAATATTAAAATAAAAAT
* * * *
47399943 ATTTTAAATTTTAAATTTAATTTGCATT
1 ATTTT-AATATTAAA-ATAA----AAAT
47399971 GATTTTAATATTAAAATAAAAAT
1 -ATTTTAATATTAAAATAAAAAT
47399994 ATTTTAA
1 ATTTTAA
47400001 ATTTTAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
22 12 0.28
23 10 0.23
24 3 0.07
27 3 0.07
28 10 0.23
29 5 0.12
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (22 bp):
ATTTTAATATTAAAATAAAAAT
Found at i:47399953 original size:29 final size:28
Alignment explanation
Indices: 47399921--47400022 Score: 81
Period size: 28 Copynumber: 3.8 Consensus size: 28
47399911 TTTACCTTTG
47399921 ATTTTAATATTAAAATAAAAATATTTTAA
1 ATTTTAA-ATTAAAATAAAAATATTTTAA
* * *** *
47399950 ATTTTAAATTTAATTTGCATTGATTTT-A
1 ATTTTAAATTAAAATAAAAAT-ATTTTAA
47399978 A---T--ATTAAAATAAAAATATTTTAA
1 ATTTTAAATTAAAATAAAAATATTTTAA
*
47400001 ATTTTAAATTTAAATAAAAATA
1 ATTTTAAATTAAAATAAAAATA
47400023 AAATAATATA
Statistics
Matches: 53, Mismatches: 13, Indels: 15
0.65 0.16 0.19
Matches are distributed among these distances:
22 5 0.09
23 10 0.19
25 1 0.02
26 1 0.02
28 24 0.45
29 12 0.23
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (28 bp):
ATTTTAAATTAAAATAAAAATATTTTAA
Found at i:47400540 original size:3 final size:3
Alignment explanation
Indices: 47400532--47400559 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
47400522 CATGGTTGCT
47400532 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
47400560 AAGAGTCGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:47411392 original size:43 final size:43
Alignment explanation
Indices: 47411267--47411393 Score: 161
Period size: 41 Copynumber: 3.0 Consensus size: 43
47411257 ATAGGATCTC
* *
47411267 CGATATGTGTTTACGTGTAAGACCAAGTCTGGGACATTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
* *
47411310 CG-TATTTGATT-CGTGTAAGACC-CTGTCTGGGACAATGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCAT
* * *
47411351 CGATATGTGATTACATGTAAGACCACGTATGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
47411394 TGTACGGGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
41 29 0.41
42 15 0.21
43 26 0.37
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:47424926 original size:27 final size:27
Alignment explanation
Indices: 47424890--47424944 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
47424880 ACTTAGATTT
**
47424890 TACATTGGTTAAATACTTAGTGTGAGA
1 TACATTGGTTAAATACCAAGTGTGAGA
47424917 TACATTGGTTAAATACCAAGTGTGAGA
1 TACATTGGTTAAATACCAAGTGTGAGA
47424944 T
1 T
47424945 TTGCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (27 bp):
TACATTGGTTAAATACCAAGTGTGAGA
Found at i:47428620 original size:3 final size:3
Alignment explanation
Indices: 47428612--47428669 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
47428602 ATTACTTAAC
* * * * * * *
47428612 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAA TGT TAC TAT AAC TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
47428660 TAT TAT TAT T
1 TAT TAT TAT T
47428670 TATATTAGTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:47433366 original size:18 final size:20
Alignment explanation
Indices: 47433331--47433372 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
47433321 CAGATTCAAA
47433331 AAAATAAAAAAATCAAAATC
1 AAAATAAAAAAATCAAAATC
47433351 AAAAT-AAAAAAT-AAAATC
1 AAAATAAAAAAATCAAAATC
47433369 AAAA
1 AAAA
47433373 ATGAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAATAAAAAAATCAAAATC
Found at i:47433371 original size:24 final size:23
Alignment explanation
Indices: 47433326--47433372 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
47433316 GAGTTCAGAT
47433326 TCAAAAAAATAAAAAAATCAAAA
1 TCAAAAAAATAAAAAAATCAAAA
47433349 TCAAAATAAA-AAATAAAATCAAAA
1 TCAAAA-AAATAAA-AAAATCAAAA
47433373 ATGAGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.15
Consensus pattern (23 bp):
TCAAAAAAATAAAAAAATCAAAA
Found at i:47433407 original size:14 final size:15
Alignment explanation
Indices: 47433380--47433410 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47433370 AAAATGAGAG
47433380 AAAAAGAAAGAAGAA
1 AAAAAGAAAGAAGAA
47433395 AAAAAGAAA-AAGAA
1 AAAAAGAAAGAAGAA
47433409 AA
1 AA
47433411 GAAAATAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAGAA
Found at i:47435926 original size:44 final size:44
Alignment explanation
Indices: 47435617--47435914 Score: 449
Period size: 44 Copynumber: 6.8 Consensus size: 44
47435607 ACAGATTGGT
*
47435617 AAGATTGTGAA-TCCTATCTCCCTGGACAGCAGTGGAATAGGTTA
1 AAGATTGT-AAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
*
47435661 AAGATTGTAAGTCCTATCTCCTTGGACAGCAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* *
47435705 AAGATTGTAAGTCCTATCTCCCTAGACAACAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* * *
47435749 AAGATTGTAAGTCCTATCTCTCTAGACAACAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
* * *
47435793 AAGATTGTAAGTCCTATCTTCCTGGACAACAGTGGAATAGGTTA
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
*
47435837 AAGATTGTAAGTCCTATCTCCCTGGATAGCAGTGGAATAGGTTG
1 AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
47435881 AAGATTGTGAA-TCCTATCTCCCT-GAGCAGCAGTG
1 AAGATTGT-AAGTCCTATCTCCCTGGA-CAGCAGTG
47435915 AAGTACGTTG
Statistics
Matches: 236, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
43 4 0.02
44 230 0.97
45 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
AAGATTGTAAGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTG
Found at i:47435993 original size:88 final size:88
Alignment explanation
Indices: 47435897--47436994 Score: 1497
Period size: 88 Copynumber: 12.5 Consensus size: 88
47435887 GTGAATCCTA
* * * * * *
47435897 TCTCCCTGAGCAGCAGTGAAGTACGTTGAAAATAGCAGATATTGTCTTCCTGTACTGGCAGTGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* * * *
47435962 GTAGATCGAAGATCTCATCCTTA
66 GTAGATCGAAGACCCCAGCCTTG
* * *
47435985 TCTCCCTGAACAGCAGCGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGGGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
47436050 GTAGATCGAAGACCCCAACCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * * * * *
47436073 TTTCCCTGAGCAGCAATAGAGTAGGTTGAAAATAGTAGATCTTGTCTTCTTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
47436138 GTAGATTGAAGACCCCAGCCTTG
66 GTAGATCGAAGACCCCAGCCTTG
** * *
47436161 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCACGTCTTCCTGTATTGGTAGTGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* *
47436226 GTAGATCGAAGACCCCAACCTTA
66 GTAGATCGAAGACCCCAGCCTTG
* * * * *
47436249 TCTCCCTTAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTATATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
47436314 GTAGATCGAAGACCCCAGCCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * * *
47436337 TCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTTTTCTTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
* *
47436402 GTAGATCAAAGACCCCAGCCTTA
66 GTAGATCGAAGACCCCAGCCTTG
*
47436425 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAAT-GACAGATCTTGT-TTTCTAGTATTGGCAGCG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAG-CAGATCTTGTCTTCCT-GTATTGGCAGCG
* *
47436488 AAGTAGATCGAAAACTCCAGCCTTG
64 AAGTAGATCGAAGACCCCAGCCTTG
* * * *
47436513 TCTCCTTGAGCAGCAGTGGAGTAGGTTAAAAATATCAGATCTTGTATTCC-GTTATTGGCAGCAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTG-TATTGGCAGCGA
*
47436577 AGTAGATCGAAGACCCTAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
** * * *
47436601 TCTCCCT-ACGCAATAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCTTGTATTGGCAGCGA
1 TCTCCCTGA-GCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA
47436665 AGTAGATCGAAGACCCCAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
* * * *
47436689 TCTCCCTAAGCAGTAGTGGAGTAGGTTAAAAAT-GAAAGATCTTGTCTTCCAGTATTGGCAGCGA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAG-CAGATCTTGTCTTCCTGTATTGGCAGCGA
* *
47436753 AGTAGATTGAAAACCCCAGCCTTG
65 AGTAGATCGAAGACCCCAGCCTTG
* * * *
47436777 TCTTCTTAAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATATTGTCTTCCTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
47436842 GTAGATCGAAGACCCCAGTCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* *
47436865 TCTCCCTGAGTAACAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
*
47436930 GTAGATCGAAGACCCCAACCTTG
66 GTAGATCGAAGACCCCAGCCTTG
* * *
47436953 TCTCCCTGAGTAGCAGTGGAGTAGGTTGAAAATA-TAGATCTT
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTT
47436995 ATCTATCTGA
Statistics
Matches: 892, Mismatches: 108, Indels: 21
0.87 0.11 0.02
Matches are distributed among these distances:
87 14 0.02
88 872 0.98
89 6 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (88 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
GTAGATCGAAGACCCCAGCCTTG
Found at i:47436866 original size:44 final size:44
Alignment explanation
Indices: 47436818--47436960 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
47436808 ATAGCAGATA
*
47436818 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
* ** * * * ** * ***
47436862 TTGTCTCCCTG-AGTAACAGTGGAGTAGGTTAAAAATAGCAGATC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAG-TC
* **
47436906 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAACC
1 TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
47436950 TTGTCTCCCTG
1 TTGTCTCCCTG
47436961 AGTAGCAGTG
Statistics
Matches: 68, Mismatches: 29, Indels: 4
0.67 0.29 0.04
Matches are distributed among these distances:
43 18 0.26
44 33 0.49
45 17 0.25
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
TTGTCTCCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGTC
Found at i:47452669 original size:63 final size:61
Alignment explanation
Indices: 47452560--47452678 Score: 157
Period size: 63 Copynumber: 1.9 Consensus size: 61
47452550 CATCAGGTAC
* ** *
47452560 CATAATAAAACACATATTGATAGTTCATGTACCACATTGGACATTTTATGAAAGTACACATAT
1 CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTT-T-AAAGTACACATAT
* * *
47452623 CATAATAAAATACATATTAATAGTTCAAATACCTCATTAGATATTTTTAAAGTACA
1 CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTTTAAAGTACA
47452679 TGTACTACAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
61 8 0.16
62 1 0.02
63 40 0.82
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (61 bp):
CATAATAAAACACATATTAATAGTTCAAATACCACATTAGACATTTTTAAAGTACACATAT
Found at i:47455209 original size:15 final size:16
Alignment explanation
Indices: 47455179--47455210 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
47455169 TCAAACATGC
47455179 TTTAACACATTATCAA
1 TTTAACACATTATCAA
47455195 TTTAACACA-TATCAA
1 TTTAACACATTATCAA
47455210 T
1 T
47455211 AAGGCACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTAACACATTATCAA
Found at i:47466297 original size:914 final size:917
Alignment explanation
Indices: 47464520--47466314 Score: 3159
Period size: 914 Copynumber: 2.0 Consensus size: 917
47464510 CTTGTGGATT
* * *
47464520 TCCCTTCGTTTCGATTTATCCACCAGGAAAGCAAACTTGTTCCCTTTCTTTACAGCCGAACAGCC
1 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
* *
47464585 ATGCAAACTAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCTGACATCAGCAATTAGCAA
66 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
47464650 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCCACCT
131 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAG-CACCT
*
47464715 GTAGTTCTAGGTTTAGTTTGCCCAAATTGTCATCAGAGTTGCTTAATTTGAACACTTCAATCCCA
195 GTAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCA
47464780 TTTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATA
260 TTTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATA
47464845 ATCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
325 ATCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
*
47464910 TCTGACTGTTTATAAAGACCTTCAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCA
390 TCTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCA
47464975 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
455 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
*
47465040 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGTCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
520 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
47465105 TGTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
585 TGTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
*
47465170 GTCATGTAAAAATAGTCATCGGACGAAAGCCGGAAAAGGCCAGTATCATCCTTGAGGGAAATGGG
650 GTCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGG
47465235 TTTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGAT
715 TTTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGAT
* * * * *
47465300 AATTCTGACCAATGAAAGGTACGTACGTTGAGTCAGGCGGTGTTTAGTACAGATCGGTAGGCATC
780 AATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCATC
*
47465365 GACACGATCTCAATTCCATTGATGAAATCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGA
845 GACACGATCTCAATTCCATTGATGAAAGCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGA
47465430 TCTCGATC
910 TCTCGATC
* *
47465438 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTGCAGCCGAATAGCC
1 TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
47465503 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
66 ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
* *
47465568 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATCCGAAGGTGGTTGT-G-G-ACCTG
131 GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCACCTG
* * *
47465630 TAGTTCTAGGTTTGGTTTGCCCAAATTGCCATTAGAGTTGCTTAATTTGAACACTTGAATCCCAT
196 TAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCAT
*
47465695 TTAAGATTACATCATAGTACTTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
261 TTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
47465760 TCCTTAAATATC-GAAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
326 TCCTTAAATATCAG-AACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCG
*
47465824 TCTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTGGTTCA
390 TCTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCA
47465889 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
455 CAAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATG
47465954 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
520 CTTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCG
* *
47466019 TGTATCTCGGAATCATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
585 TGTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTT
* * *** *
47466084 GTCATGTAAAAATAGTCATTGGATGAATTTCGAAAAAGGCCAGTATCATCCTTGTGGGAAATGGG
650 GTCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGG
* * * *
47466149 TTTGGCCC-CAACATTCAATCGATACGCCATCTCAATTATCGTGTCATTCTTAACGAGGAATGGA
715 TTT-GCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGA
* *
47466213 TAATTCTGGCCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATTGGTAGGCAT
779 TAATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCAT
* * *
47466278 CGACACGTTCTCGATTCCATTGTTGAAAGCGTAAGTA
844 CGACACGATCTCAATTCCATTGATGAAAGCGTAAGTA
47466315 TCGTTAGAAG
Statistics
Matches: 834, Mismatches: 41, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
913 1 0.00
914 651 0.78
915 4 0.00
916 1 0.00
917 1 0.00
918 176 0.21
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (917 bp):
TCCCTTCATTTCGATTTATCCACCAGCAAAGCAAACTTGTTCCCTTTATTTACAGCCGAACAGCC
ATGCAAACCAGTAAAGAAATTATGGCAATCAAACCAGCCGCACATCCGACATCAGCAATTAGCAA
GCTTCTCTTCTTGGATTTTTCACCTGCAGAATTGGACGAATACGAAGGTGGTCGTGGAGCACCTG
TAGTTCTAGGTTTAGTTTGCCCAAATTGCCATCAGAGTTGCTTAATTTGAACACTTCAATCCCAT
TTAAGATTACATCATAGTAATTTGCATGAATGGTGATGTACTCCTTTGATACTAACACGACATAA
TCCTTAAATATCAGAACTTTGCCTTGCACAGTCCACACAATCACATCAGCGTTTTGTTTAGCCGT
CTGACTGTTTATAAAGACCTTAAACTTTTGGTCTCCCAGAGAGTTTACCAGATCTTGTCGTTCAC
AAAAATGAAGCCTCACCATATACCTAAATCCCGAACCCATGGGCAATCTCCATGATAAGTTATGC
TTCTCGTTGTACGCAAGGCTAGGCCCCATTGCCTGTGTAGTCTGATAAACCATCTCCGGTGCCGT
GTATCTCAGAATAATTGTGTAGTTGATTAGCATGGAGGTGTTGACAGTGACATAATTATTTTTTG
TCATGTAAAAATAGTCATCGGACGAAAGCCGAAAAAGGCCAGTATCATCCTTGAGGGAAATGGGT
TTGCCCTCAACATTCAATCGATACGCCATCTCAAGTACCGTATCATTCTCAACGAGGAATGGATA
ATTCTGACCAACGAAAGGTACATACGTTGAGTCAGGCAGTGTGTAGTAAAGATCGGTAGGCATCG
ACACGATCTCAATTCCATTGATGAAAGCGTAAGTAAAGATTGGTAGGCATCAACACGATCACGAT
CTCGATC
Found at i:47469287 original size:102 final size:100
Alignment explanation
Indices: 47469155--47469394 Score: 392
Period size: 102 Copynumber: 2.4 Consensus size: 100
47469145 TTTCCTGAAC
*
47469155 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAA-GCCATGT
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTG-CCAACGCCATGT
*
47469219 CTCAAACATGGTCTTACAGGGGACCTCTCTCATCTCGG
65 CCCAAACATGGTCTTACAGGGGA-C-CTCTCATCTCGG
* *
47469257 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTC
*
47469322 CCAAACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
*
47469357 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGAC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAC
47469395 CTCTTTACCC
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
100 48 0.37
101 5 0.04
102 77 0.59
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTC
CCAAACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:47469382 original size:152 final size:150
Alignment explanation
Indices: 47469114--47469398 Score: 369
Period size: 152 Copynumber: 1.9 Consensus size: 150
47469104 CATGCCAAAA
* * * * *
47469114 CCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGAACTGCCAATGCCATATCCCAGATATG
1 CCATATCCCAGACATGGTCTTACATGGGATGTCTCCTG-ACTGCCAACGCCATATCCCAAACATG
** *
47469179 GTCTTACATGGGAGTTCTCATATCGGTGCCCAAGCCATGTCTCAAACATGGTCTTACAGGGGACC
65 GTCTTACATGGGACCTCTCATATCGGTGCCCAAGCCATGTCCCAAACATGGTCTTACAGGGGACC
47469244 TCTCTCATCTCGGTGCCAATG
130 TCTCTCATCTCGGTGCCAATG
* *
47469265 CCATATCCCAGACATGGTCTTACATGGGACT-TCTCATCTCG-GTGCCAACGCCATGTCCCAAAC
1 CCATATCCCAGACATGGTCTTACATGGGA-TGTCTC--CT-GACTGCCAACGCCATATCCCAAAC
* * * *
47469328 ATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAATGCCATGTCCCAGATATGGTCTTACATGG
62 ATGGTCTTACATGGGACCTCTCATATCGGTGCCCAA-GCCATGTCCCAAACATGGTCTTACAGGG
47469392 GACCTCT
126 GACCTCT
47469399 TTACCCAAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
151 35 0.30
152 77 0.67
153 2 0.02
154 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (150 bp):
CCATATCCCAGACATGGTCTTACATGGGATGTCTCCTGACTGCCAACGCCATATCCCAAACATGG
TCTTACATGGGACCTCTCATATCGGTGCCCAAGCCATGTCCCAAACATGGTCTTACAGGGGACCT
CTCTCATCTCGGTGCCAATG
Found at i:47469395 original size:50 final size:50
Alignment explanation
Indices: 47469114--47469398 Score: 344
Period size: 50 Copynumber: 5.7 Consensus size: 50
47469104 CATGCCAAAA
** * *
47469114 CCATGTCCCAGACATGGTCTTACATGGGATGTTTC--CT-GAACTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG--GTGCCAATG
* * ** *
47469163 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAA-G
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAATG
* * *
47469213 CCATGTCTCAAACATGGTCTTACAGGGGACCTCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-C-CTCTCATCTCGGTGCCAATG
* * *
47469265 CCATATCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
*
47469315 CCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
*
47469365 CCATGTCCCAGATATGGTCTTACATGGGACCTCT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
47469399 TTACCCAAAT
Statistics
Matches: 202, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
49 30 0.15
50 123 0.61
51 10 0.05
52 39 0.19
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATG
Found at i:47474337 original size:25 final size:23
Alignment explanation
Indices: 47474309--47474445 Score: 85
Period size: 25 Copynumber: 6.0 Consensus size: 23
47474299 GTGCTATCAT
47474309 ATTATTAGCATGTCAGTGCTCTCTG
1 ATTATTAGCA--TCAGTGCTCTCTG
*
47474334 ATTA-T-G-A-CA-TGCTCTCTA
1 ATTATTAGCATCAGTGCTCTCTG
*
47474352 ATTATTAGCACGTTAGTGCTCTCTG
1 ATTATTAGCA--TCAGTGCTCTCTG
*
47474377 ATTATTAGTCCATCAGTTCTCTCTG
1 ATTATTAG--CATCAGTGCTCTCTG
* *
47474402 ATTACTA--A-CA-CGCTCTCTG
1 ATTATTAGCATCAGTGCTCTCTG
*
47474421 ATTATTAGCACATTAGTGCTCTCTG
1 ATTATTAG--CATCAGTGCTCTCTG
47474446 TTTAGACAAT
Statistics
Matches: 86, Mismatches: 11, Indels: 30
0.68 0.09 0.24
Matches are distributed among these distances:
18 12 0.14
19 16 0.19
20 3 0.03
21 2 0.02
22 1 0.01
23 2 0.02
24 3 0.03
25 45 0.52
27 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (23 bp):
ATTATTAGCATCAGTGCTCTCTG
Found at i:47476352 original size:51 final size:50
Alignment explanation
Indices: 47476238--47476364 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 50
47476228 GATGGTCATG
* * *
47476238 TGTGTAGTACTATGTACAGGCTACTAAGTGTACCAGAATGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTACCAGAATGATGGATCACA
*
47476288 TGTGTAGTACTATGTGCAGGCTACTACA-TGTACC-GGATGGTAAT-GATCACA
1 TGTGTAGTACTATGTGCAGGCTACTA-AGTGTACCAGAAT-G--ATGGATCACA
*
47476339 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
47476365 TGTGAACCGA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 3 0.04
50 32 0.47
51 31 0.46
52 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTAAGTGTACCAGAATGATGGATCACA
Found at i:47476426 original size:45 final size:45
Alignment explanation
Indices: 47476370--47476464 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
47476360 TACTATGTGA
*
47476370 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGATTCC
1 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
* * *
47476415 ACCGGACATCATTGATTATTAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
47476460 ACCGA
1 ACCGA
47476465 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCCGAATCC
Found at i:47486204 original size:12 final size:12
Alignment explanation
Indices: 47486187--47486211 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47486177 TTCATAAGTG
47486187 AGATAAGATGAA
1 AGATAAGATGAA
47486199 AGATAAGATGAA
1 AGATAAGATGAA
47486211 A
1 A
47486212 AAGAAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AGATAAGATGAA
Found at i:47491261 original size:27 final size:28
Alignment explanation
Indices: 47491132--47491261 Score: 113
Period size: 28 Copynumber: 4.7 Consensus size: 28
47491122 AACACGTCAG
* * *
47491132 GAAATAATAAACCTTTCTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
* *
47491160 GAAAGAATAAGCCTTTGCGGTGAAGTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
* * * * ** *
47491188 -AAATCAGT-AGCCTTTATTGCAAACTAC
1 GAAA-GAATAAGCCTTTGTGGTGAACTAT
47491215 GAAAGAATAAGCCTTTGTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGTGAACTAT
*
47491243 GAAAG-ATTAGCCTTTGTGG
1 GAAAGAATAAGCCTTTGTGG
47491262 CGGACTTTGT
Statistics
Matches: 77, Mismatches: 22, Indels: 7
0.73 0.21 0.07
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTGTGGTGAACTAT
Found at i:47493582 original size:37 final size:36
Alignment explanation
Indices: 47493524--47493712 Score: 177
Period size: 37 Copynumber: 5.1 Consensus size: 36
47493514 ATTACACAAG
*
47493524 TAATCCAACTGA-AACACGCCAATCGCTCATAAGAGC
1 TAATCCACCTGATAACACGCCAAT-GCTCATAAGAGC
*
47493560 TAATCCACCTGATAATACGCCAAATGCTCATAAGAGC
1 TAATCCACCTGATAACACGCC-AATGCTCATAAGAGC
* * * *
47493597 TAATCCACCCGATAACATGTCAAATGCTCATAAGAGG
1 TAATCCACCTGATAACACG-CCAATGCTCATAAGAGC
* * *
47493634 TAATCTACCCT-ATAACAGGCCAAATGCTCATATGAGC
1 TAATCCA-CCTGATAACACGCC-AATGCTCATAAGAGC
** **
47493671 TAATCCACCCT-ATGGCACGCCAAACACTCATAAGAGC
1 TAATCCA-CCTGATAACACGCC-AATGCTCATAAGAGC
47493708 TAATC
1 TAATC
47493713 ATCCACCCTC
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
36 12 0.09
37 110 0.86
38 6 0.05
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.21
Consensus pattern (36 bp):
TAATCCACCTGATAACACGCCAATGCTCATAAGAGC
Found at i:47493701 original size:74 final size:74
Alignment explanation
Indices: 47493536--47493712 Score: 221
Period size: 74 Copynumber: 2.4 Consensus size: 74
47493526 ATCCAACTGA
* *
47493536 AACACGCCAATCGCTCATAAGAGCTAATCCACCTGATAATACGCCAAATGCTCATAAGAGCTAAT
1 AACACGCCAAACGCTCATAAGAGCTAATCCACCTGATAACACGCCAAATGCTCATAAGAGCTAAT
47493601 CCACCCGAT
66 CCACCCGAT
* * * * * * *
47493610 AACATGTCAAATGCTCATAAGAGGTAATCTACCCT-ATAACAGGCCAAATGCTCATATGAGCTAA
1 AACACGCCAAACGCTCATAAGAGCTAATCCA-CCTGATAACACGCCAAATGCTCATAAGAGCTAA
*
47493674 TCCACCCTAT
65 TCCACCCGAT
** *
47493684 GGCACGCCAAACACTCATAAGAGCTAATC
1 AACACGCCAAACGCTCATAAGAGCTAATC
47493713 ATCCACCCTC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 82 0.96
75 3 0.04
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.20
Consensus pattern (74 bp):
AACACGCCAAACGCTCATAAGAGCTAATCCACCTGATAACACGCCAAATGCTCATAAGAGCTAAT
CCACCCGAT
Found at i:47494746 original size:86 final size:86
Alignment explanation
Indices: 47494647--47494824 Score: 322
Period size: 86 Copynumber: 2.1 Consensus size: 86
47494637 TTTTAGTTAG
*
47494647 GGATTAAATTGTTAAAGGTGTAAATTCTAGCTTTTTATTGCGAAATGATGGTTGATATGAGTTGT
1 GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
47494712 TTCAAAGTCCCTTGCACCTAT
66 TTCAAAGTCCCTTGCACCTAT
* *
47494733 GGATTAAATTGTTAAATGTGTAAATTCTAGCATTTTATTGTGAAATGATGGTTGATATGAGTTGT
1 GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
47494798 TTCAAAGTCCCTTGCACCTAT
66 TTCAAAGTCCCTTGCACCTAT
47494819 GG-TTAA
1 GGATTAA
47494825 TATGGATTTA
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 4 0.04
86 85 0.96
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (86 bp):
GGATTAAATTGTTAAAGGTGTAAATTCTAGCATTTTATTGCGAAATGATGGTTGATATGAGTTGT
TTCAAAGTCCCTTGCACCTAT
Done.