Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 165 of 199
Found at i:48457421 original size:45 final size:45
Alignment explanation
Indices: 48457361--48457453 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
48457351 TACTATGTGA
* * *
48457361 ACCAAACATCCTTGATTAGTAAGGTGGTTGCTATGTACTGATTCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
* *
48457406 ACCAGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
48457451 ACC
1 ACC
48457454 GAGTATCTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (45 bp):
ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
Found at i:48460208 original size:50 final size:50
Alignment explanation
Indices: 48459991--48460391 Score: 480
Period size: 50 Copynumber: 7.8 Consensus size: 50
48459981 GATCATAACA
* * ** *
48459991 TGCCAAAGCCATGTCCCAGACATGCTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* ** *
48460042 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATATTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* ** *
48460093 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
*
48460144 TGTCC-ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * * *
48460194 TGCCAACGTCATGTCCTAGGCATGGCCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
48460244 TGCCAATGTCATGTCCTAGACATGGTCTTACATGAGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
48460294 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
*
48460349 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
48460392 TTACCCAAAT
Statistics
Matches: 317, Mismatches: 25, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
49 2 0.01
50 136 0.43
51 130 0.41
52 2 0.01
53 4 0.01
55 2 0.01
56 41 0.13
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:48465487 original size:102 final size:100
Alignment explanation
Indices: 48465307--48465644 Score: 439
Period size: 102 Copynumber: 3.3 Consensus size: 100
48465297 TATCGATGAA
* * * *
48465307 CACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCTATAAAT-ATGGTCACATGTGTAGTAC
* *
48465372 TAAGTGAAAGCTACAATGTGTACCGAGAAGCTTTGGT
65 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
* *
48465409 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTTATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCTATAAAT-ATGGTCACATGTGTAGTAC
*
48465474 TAAGTGAAGGCTACTATGTGTACTGAAAAGCTTTGGT
65 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* * *
48465511 CACGTGTGTAGTACTATGTGAAGGCTACTACATGAACCGTA-AAACT-TGATCACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATC-TATAAA-TATGGTCACATGTGTAGTA
* * * * *
48465574 CTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
64 CTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
48465611 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
48465645 TATCAAATGA
Statistics
Matches: 212, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
100 37 0.17
101 42 0.20
102 129 0.61
103 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (100 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCTATAAATATGGTCACATGTGTAGTACT
AAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:48465577 original size:50 final size:50
Alignment explanation
Indices: 48465311--48465644 Score: 336
Period size: 51 Copynumber: 6.6 Consensus size: 50
48465301 GATGAACACG
* * * * *
48465311 TGTGTAGTACTGTGTGAATGCTACTACGTGTATCGATAAATA-ATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGGTCACA
* * * * * * *
48465362 TGTGTAGTACTAAGTGAAAGCTACAATGTGTACCG-AGAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGTCACA
* **
48465413 TGTGTAGTACTGTGTGAAGGCTACTACGTGAA-TTTATAAA-TGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAACT--TGGTCACA
* * * * *
48465464 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACTG-AAAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGTCACA
* *
48465515 TGTGTAGTACTATGTGAAGGCTACTACATGAACCGTAAAACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGTCACA
* *
48465565 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGTCACA
48465615 TGTGTAGTACTATGTGAAGGCTACTACGTG
1 TGTGTAGTACTATGTGAAGGCTACTACGTG
48465645 TATCAAATGA
Statistics
Matches: 237, Mismatches: 35, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
49 2 0.01
50 90 0.38
51 139 0.59
52 5 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGTCACA
Found at i:48471466 original size:15 final size:14
Alignment explanation
Indices: 48471447--48471476 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
48471437 AATTTCTCTT
48471447 TAAAAAATTGGGAA
1 TAAAAAATTGGGAA
48471461 TAAAAAATTGGGAA
1 TAAAAAATTGGGAA
48471475 TA
1 TA
48471477 GACTTTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (14 bp):
TAAAAAATTGGGAA
Found at i:48473680 original size:21 final size:21
Alignment explanation
Indices: 48473624--48473707 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
48473614 TGATCAGTAT
*
48473624 ACGACACAT-AAGTGCCTGTA
1 ACGACACATAAAGTGCCTGAA
** *
48473644 ACGACACACGAGGTGCCTGAA
1 ACGACACATAAAGTGCCTGAA
48473665 ACGACACATAAAGTGCCTGAGA
1 ACGACACATAAAGTGCCTGA-A
*
48473687 TGCGACACATAAAGTGCCTGA
1 -ACGACACATAAAGTGCCTGA
48473708 TCGGCAAAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.15
21 26 0.48
22 1 0.02
23 19 0.35
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (21 bp):
ACGACACATAAAGTGCCTGAA
Found at i:48473704 original size:44 final size:41
Alignment explanation
Indices: 48473624--48473707 Score: 98
Period size: 44 Copynumber: 2.0 Consensus size: 41
48473614 TGATCAGTAT
* *
48473624 ACGACACATAAGTGCCTGTAACGACACACGAGGTGCCTGAA
1 ACGACACATAAGTGCCTGTAACGACACACAAAGTGCCTGAA
*
48473665 ACGACACATAAAGTGCCTG-AGATGCGACACATAAAGTGCCTGA
1 ACGACACAT-AAGTGCCTGTA-A--CGACACACAAAGTGCCTGA
48473708 TCGGCAAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 10 0.28
42 10 0.28
44 16 0.44
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (41 bp):
ACGACACATAAGTGCCTGTAACGACACACAAAGTGCCTGAA
Found at i:48474915 original size:15 final size:16
Alignment explanation
Indices: 48474897--48474928 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
48474887 TTAATTAATA
48474897 TAATTT-ATAATATTT
1 TAATTTAATAATATTT
48474912 TAATTTAATAATATTT
1 TAATTTAATAATATTT
48474928 T
1 T
48474929 TGTAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTAATAATATTT
Found at i:48480970 original size:42 final size:41
Alignment explanation
Indices: 48480838--48481152 Score: 269
Period size: 43 Copynumber: 7.5 Consensus size: 41
48480828 CTCGGTGGAT
* * *
48480838 TCAGCACTTAGCAACCACC-ATAAATTCAGTGACACAGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
* *
48480879 TCAGCACATAGCAACCCCTTTCACAATTAAG-GATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* * *
48480922 TCAGCACTTAGAAACCACCTTTATATTCAGTGAAACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
* **
48480964 TCAGCACTTAGCAACCCCTTTCACGA-TCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* *
48481007 TCAGCACATAGCAACCACCTTTATATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
** *
48481049 TCAGCACTTAGCAACCCCTTTCACAA-TCAAAGATACGGTGGGA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* * * * * * *
48481092 TCAGCAGTTAGCAACCACCTCTAGAGTCAATAATTCGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
*
48481134 TCAGCACTTAACAACCCCT
1 TCAGCACTTAGCAACCCCT
48481153 CGGGGAATCA
Statistics
Matches: 225, Mismatches: 33, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
40 2 0.01
41 29 0.13
42 89 0.40
43 91 0.40
44 14 0.06
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (41 bp):
TCAGCACTTAGCAACCCCTTTAAATTCAGTGATACGGGGAA
Found at i:48480976 original size:85 final size:85
Alignment explanation
Indices: 48480830--48481152 Score: 443
Period size: 85 Copynumber: 3.8 Consensus size: 85
48480820 ATCCGCTACT
* * * * * *
48480830 CGGTGGATTCAGCACTTAGCAACCACC-ATAAATTCAGTGACACAGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
* *
48480894 CCCTTTCACAATTAAGGATA
66 CCCTTTCACAATCAAAGATA
*
48480914 CGGTGGAATCAGCACTTAGAAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
*
48480979 CCCTTTCACGATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* *
48480999 CGGTGGAATCAGCACATAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
48481064 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * * * * * * *
48481084 CGGTGGGATCAGCAGTTAGCAACCACCTCTAGAGTCAAT-AATTCGGGGAATCAGCACTTAACAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAA-ACGGGGAATCAGCACTTAGCAA
48481148 CCCCT
65 CCCCT
48481153 CGGGGAATCA
Statistics
Matches: 213, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
84 26 0.12
85 187 0.88
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:48485005 original size:18 final size:18
Alignment explanation
Indices: 48484967--48485012 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
48484957 TTTTATTTCA
* * *
48484967 TTTATACATTTATATATT
1 TTTATAAATTTATAAAAT
48484985 TTTATAAATTTATAAAAT
1 TTTATAAATTTATAAAAT
48485003 TTTA-AAATTT
1 TTTATAAATTT
48485013 TTATTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTATAAATTTATAAAAT
Found at i:48486360 original size:29 final size:29
Alignment explanation
Indices: 48486292--48486366 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 29
48486282 AAATTTTTAA
48486292 ATAA-TAATTTTTAAAAAAATTCTAAAATT
1 ATAATTAA-TTTTAAAAAAATTCTAAAATT
* * *
48486321 AT-CTTAGTTTTAAAAAAA-TCTGAAATTT
1 ATAATTAATTTTAAAAAAATTCT-AAAATT
*
48486349 ATAATTAATTTTTAAAAA
1 ATAATTAATTTTAAAAAA
48486367 TTATAGATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
27 3 0.08
28 18 0.49
29 16 0.43
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (29 bp):
ATAATTAATTTTAAAAAAATTCTAAAATT
Found at i:48487092 original size:6 final size:6
Alignment explanation
Indices: 48487081--48487106 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
48487071 CACTAAATAC
48487081 AATTTT AATTTT AATTTT AATTTT AA
1 AATTTT AATTTT AATTTT AATTTT AA
48487107 ATATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
AATTTT
Found at i:48489347 original size:27 final size:27
Alignment explanation
Indices: 48489317--48489553 Score: 203
Period size: 27 Copynumber: 8.8 Consensus size: 27
48489307 AAAATTATTG
48489317 AAATACCCTCAAAGGGTAAAATTACCA
1 AAATACCCTCAAAGGGTAAAATTACCA
* ** *
48489344 AAATATCCTTGAAGGGTAAAATTACCG
1 AAATACCCTCAAAGGGTAAAATTACCA
* *
48489371 AAATACCCTCGAAGGGTAAAATTACTA
1 AAATACCCTCAAAGGGTAAAATTACCA
* * *
48489398 AAATACCCTTGAAA-GGAAAAATTACTA
1 AAATACCC-TCAAAGGGTAAAATTACCA
* **
48489425 AAATACCCTTAAAGGGTAAAATTACTG
1 AAATACCCTCAAAGGGTAAAATTACCA
* * * *
48489452 AAACACCTTCGAAGGGTAAAATTA-TA
1 AAATACCCTCAAAGGGTAAAATTACCA
* *
48489478 GAAATACCCTCAAAGGGT-AAATTATCG
1 -AAATACCCTCAAAGGGTAAAATTACCA
* * * * *
48489505 AAGTACCCCCAAAGGATAAAATTATCG
1 AAATACCCTCAAAGGGTAAAATTACCA
*
48489532 AAATACCC-CTAAAAGGTAAAAT
1 AAATACCCTC-AAAGGGTAAAAT
48489554 GACTGTTATA
Statistics
Matches: 174, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
26 26 0.15
27 145 0.83
28 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (27 bp):
AAATACCCTCAAAGGGTAAAATTACCA
Found at i:48489374 original size:54 final size:53
Alignment explanation
Indices: 48489304--48489498 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 53
48489294 TGCGATTCGT
* *
48489304 GGTAAAATTATTGAAATACCCTCAAAGGGTAAAATTACCAAAATATCCTTGAAG
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATA-CCTTGAAG
* * *
48489358 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACTAAAATACCCTTGAAA
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATA-CCTTGAAG
* * * * *
48489412 GGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTACTGAAACACCTTCGAAG
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATACCTT-GAAG
48489466 GGTAAAATTA-TAGAAATACCCTCAAAGGGTAAA
1 GGTAAAATTACT-GAAATACCCTCAAAGGGTAAA
48489499 TTATCGAAGT
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 5 0.04
54 117 0.96
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (53 bp):
GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATACCTTGAAG
Found at i:48489440 original size:81 final size:79
Alignment explanation
Indices: 48489304--48489539 Score: 258
Period size: 81 Copynumber: 2.9 Consensus size: 79
48489294 TGCGATTCGT
* * * * *
48489304 GGTAAAATTATTGAAATACCCTCAAAGGGTAAAATTACCAAAATATCCTTGAAGGGTAAAATTAC
1 GGTAAAATTA-TAAAATACCCTCAAA-GGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
48489369 CGAAATACCCTCGAAG
64 CGAAATACCCTCGAAG
*
48489385 GGTAAAATTACTAAAATACCCTTGAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
1 GGTAAAATTA-TAAAATACCC-TCAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
* * *
48489450 TGAAACACCTTCGAAG
64 CGAAATACCCTCGAAG
** * * ** * *
48489466 GGTAAAATTATAGAAATACCCTCAAAGGGTAAATTA-TCGAAGTACCCCCAAAGGATAAAATTAT
1 GGTAAAATTATA-AAATACCCTCAAAGGAAAAATTACT-AAAATACCCTTAAAGGGTAAAATTAC
48489530 CGAAATACCC
64 CGAAATACCC
48489540 CTAAAAGGTA
Statistics
Matches: 130, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 41 0.32
81 84 0.65
82 4 0.03
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (79 bp):
GGTAAAATTATAAAATACCCTCAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTACCG
AAATACCCTCGAAG
Found at i:48489760 original size:26 final size:26
Alignment explanation
Indices: 48489731--48489807 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
48489721 TTGCCACATA
* * *
48489731 TACTGTTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCTTTGCTGCGT
48489757 TACTATTACTGGCAGCTTTGCTGCGT
1 TACTATTACTGGCAGCTTTGCTGCGT
* *
48489783 CATTATTACTGGCAGCTTTGCTGCG
1 TACTATTACTGGCAGCTTTGCTGCG
48489808 ATATTGGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.38
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCGT
Found at i:48490478 original size:20 final size:20
Alignment explanation
Indices: 48490453--48490495 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
48490443 TTCCAAAATT
* * *
48490453 AAGAAACGAGTTTTATCAAC
1 AAGAAACAAGTTTCACCAAC
48490473 AAGAAACAAGTTTCACCAAC
1 AAGAAACAAGTTTCACCAAC
48490493 AAG
1 AAG
48490496 TCTAAGTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (20 bp):
AAGAAACAAGTTTCACCAAC
Found at i:48517487 original size:30 final size:31
Alignment explanation
Indices: 48517422--48517490 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
48517412 ACTATTAATC
* *
48517422 AGTGACTGTTTTGTCACTTTTTTATAATGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
48517453 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
48517482 AAGTGACTG
1 -AGTGACTG
48517491 AAATGAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 14 0.41
31 15 0.44
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Found at i:48519490 original size:22 final size:22
Alignment explanation
Indices: 48519462--48519578 Score: 92
Period size: 25 Copynumber: 5.0 Consensus size: 22
48519452 GGCCCTTATG
48519462 GTATTCTATTAGCCTTTGTGGC
1 GTATTCTATTAGCCTTTGTGGC
* * *
48519484 ATATTCTGTTAGCTTTTGTGGC
1 GTATTCTATTAGCCTTTGTGGC
* *
48519506 GTATTATGTATGTTGCCTTTGTGGC
1 GTA-T-TCTAT-TAGCCTTTGTGGC
48519531 GTATTCTGTATGTTA-CCTTTGTGGC
1 GTATTC--TA--TTAGCCTTTGTGGC
* *
48519556 GTATTCTGATTGGCCCTTGTGGC
1 GTATTCT-ATTAGCCTTTGTGGC
48519579 ATACTCTAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 17
0.72 0.12 0.17
Matches are distributed among these distances:
22 23 0.31
23 12 0.16
24 5 0.07
25 32 0.43
26 1 0.01
27 1 0.01
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.46
Consensus pattern (22 bp):
GTATTCTATTAGCCTTTGTGGC
Found at i:48519561 original size:25 final size:25
Alignment explanation
Indices: 48519498--48519563 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
48519488 TCTGTTAGCT
* *
48519498 TTTGTGGCGTATTATGTATGTTGCC
1 TTTGTGGCGTATTCTGTATGTTACC
48519523 TTTGTGGCGTATTCTGTATGTTACC
1 TTTGTGGCGTATTCTGTATGTTACC
48519548 TTTGTGGCGTATTCTG
1 TTTGTGGCGTATTCTG
48519564 ATTGGCCCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.11, C:0.14, G:0.27, T:0.48
Consensus pattern (25 bp):
TTTGTGGCGTATTCTGTATGTTACC
Found at i:48521684 original size:29 final size:30
Alignment explanation
Indices: 48521626--48521684 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
48521616 AAACATTTTT
48521626 ACTTTCCCTCCAAAACCTTTACACCCTCCC
1 ACTTTCCCTCCAAAACCTTTACACCCTCCC
*
48521656 ACTTTCCC-CCTAAAACTTTTAC-CCCTCCC
1 ACTTTCCCTCC-AAAACCTTTACACCCTCCC
48521685 CCCAGTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.22, C:0.49, G:0.00, T:0.29
Consensus pattern (30 bp):
ACTTTCCCTCCAAAACCTTTACACCCTCCC
Found at i:48525784 original size:19 final size:19
Alignment explanation
Indices: 48525723--48525784 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
48525713 ACGGCCTACC
48525723 AACACCTCCACCACCGAGT
1 AACACCTCCACCACCGAGT
* * **
48525742 AACATCATCCA-CAGCCCACC
1 AACA-CCTCCACCA-CCGAGT
48525762 AACACCTCCACCACCGAGT
1 AACACCTCCACCACCGAGT
48525781 AACA
1 AACA
48525785 TCATCCATAG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.35, C:0.47, G:0.08, T:0.10
Consensus pattern (19 bp):
AACACCTCCACCACCGAGT
Found at i:48525811 original size:39 final size:39
Alignment explanation
Indices: 48525720--48525812 Score: 114
Period size: 39 Copynumber: 2.4 Consensus size: 39
48525710 GTTACGGCCT
**
48525720 ACCAACACCTCCACCACCGAGTAACATCATCCACAGCCC
1 ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
** * *
48525759 ACCAACACCTCCACCACCGAGTAACATCATCCATAGTCC
1 ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
* *
48525798 GCCAGCAAATCCACC
1 ACCAACAAATCCACC
48525813 GGAAGCAGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.33, C:0.46, G:0.09, T:0.12
Consensus pattern (39 bp):
ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
Found at i:48539729 original size:13 final size:13
Alignment explanation
Indices: 48539711--48539755 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
48539701 ACATTGTTAA
48539711 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
* *
48539724 ACTTTTTCACAGC
1 ACTTTTTAAAAGC
*
48539737 ACTTTTCAAAAGC
1 ACTTTTTAAAAGC
48539750 A-TTTTT
1 ACTTTTT
48539756 CAACCTCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:48542027 original size:22 final size:22
Alignment explanation
Indices: 48541996--48542041 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
48541986 TCAGGAGCCC
48541996 AAAACCGAGACCAAAACCCAAA
1 AAAACCGAGACCAAAACCCAAA
* *
48542018 AAAACTGAGACCAAGACCCAAA
1 AAAACCGAGACCAAAACCCAAA
48542040 AA
1 AA
48542042 TTGGTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.59, C:0.28, G:0.11, T:0.02
Consensus pattern (22 bp):
AAAACCGAGACCAAAACCCAAA
Found at i:48542400 original size:11 final size:11
Alignment explanation
Indices: 48542327--48542402 Score: 61
Period size: 11 Copynumber: 6.8 Consensus size: 11
48542317 ATTCCAAAAA
*
48542327 TAATATTATTT
1 TAATATTAATT
48542338 TAATAGTTTAATAT
1 TAATA--TTAAT-T
48542352 TAA-ATTTAATT
1 TAATA-TTAATT
*
48542363 TAATATTTATGT
1 TAATATTAAT-T
48542375 TAATATT-ATT
1 TAATATTAATT
48542385 T--TATTAATT
1 TAATATTAATT
48542394 TAATATTAA
1 TAATATTAA
48542403 AATGATTATC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 21 0.38
12 15 0.27
13 5 0.09
14 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
TAATATTAATT
Found at i:48542420 original size:68 final size:69
Alignment explanation
Indices: 48542345--48542479 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 69
48542335 TTTTAATAGT
* * * *
48542345 TTAATATTAAATTTAATTTAATATTTATGTTAATAT-TATTTTATTAATTTAATATTAAAATGAT
1 TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
48542409 TATC
66 TATC
* *
48542413 TTAATATTAAATTTAATCTAATATTTATCTTGATATATATTATATTAATTTAACATTAAAGTGAT
1 TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
48542478 TA
66 TA
48542480 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
68 33 0.55
69 27 0.45
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
TATC
Found at i:48543580 original size:24 final size:26
Alignment explanation
Indices: 48543526--48543583 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
48543516 ACCTATCTCA
*
48543526 TTATATATATATATATTTTATAATTGT
1 TTATA-ATATATATATTATATAATTGT
* *
48543553 TTATAATATTTATATTATGTAA-TG-
1 TTATAATATATATATTATATAATTGT
48543577 TTATAAT
1 TTATAAT
48543584 TGTGATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.25
25 2 0.07
26 14 0.50
27 5 0.18
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (26 bp):
TTATAATATATATATTATATAATTGT
Found at i:48543601 original size:34 final size:33
Alignment explanation
Indices: 48543527--48543602 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 33
48543517 CCTATCTCAT
* *
48543527 TATATATA-TATATATTTTATAATTGTTTATAA
1 TATATATATTATATATGTTATAATTGTATATAA
* *
48543559 TATTTATATTATGTAATGTTATAATTGTGATATATA
1 TATATATATTATAT-ATGTTATAATTGT-ATATA-A
48543595 TATATATA
1 TATATATA
48543603 AGATGATCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 7 0.20
33 4 0.11
34 12 0.34
35 4 0.11
36 8 0.23
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (33 bp):
TATATATATTATATATGTTATAATTGTATATAA
Found at i:48544888 original size:17 final size:19
Alignment explanation
Indices: 48544859--48544893 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
48544849 CCCTCGTCCT
48544859 CTAAGGAGAAAT-AGAAAG
1 CTAAGGAGAAATAAGAAAG
48544877 CTAAGG-GAAATAAGAAA
1 CTAAGGAGAAATAAGAAA
48544894 TTGATTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.06, G:0.26, T:0.11
Consensus pattern (19 bp):
CTAAGGAGAAATAAGAAAG
Found at i:48547328 original size:45 final size:45
Alignment explanation
Indices: 48547251--48547336 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
48547241 AGATACTCGG
* * *
48547251 TGGATTCATCACATAGAAACCACCTTATTAATCAATGATGTCCGA
1 TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCGA
*
48547296 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGT
48547337 TCGGTTCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCGA
Found at i:48547409 original size:51 final size:51
Alignment explanation
Indices: 48547338--48547635 Score: 298
Period size: 51 Copynumber: 5.9 Consensus size: 51
48547328 CAATGATGTT
* * * *
48547338 CGGTTCACATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * **
48547389 CGATACACGTAGTAGCCTGCACATAGTGCTACACACGTGATCGA-AATTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATC
* ** * * *
48547440 TGGTATGCATAGTAGCCTGCACATAGTACTACACATGTTACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * *
48547491 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGA-AACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATC
** * * * *
48547542 CGGTATGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATTA--TTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-ATTACCATC
48547592 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
48547636 CACTTTCACT
Statistics
Matches: 194, Mismatches: 48, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.01
50 42 0.22
51 145 0.75
52 5 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
Found at i:48547483 original size:102 final size:102
Alignment explanation
Indices: 48547345--48547631 Score: 461
Period size: 102 Copynumber: 2.8 Consensus size: 102
48547335 GTTCGGTTCA
* *
48547345 CATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
* * *
48547410 CATAGTGCTACACACGTGATCGAAATTATCTGGTATG
66 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
* *
48547447 CATAGTAGCCTGCACATAGTACTACACATGTTACCATTACCATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
48547512 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
66 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
* * *
48547549 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATTA--TTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACC-ATTACCATCCGATACACGTAGTAGCCTGC
48547612 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
48547632 CCATCACTTT
Statistics
Matches: 172, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
101 40 0.23
102 128 0.74
103 4 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATCCGGTATG
Found at i:48553326 original size:11 final size:11
Alignment explanation
Indices: 48553253--48553328 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
48553243 TATTCCAAAA
*
48553253 TAATATTATTT
1 TAATATTAATT
48553264 TAATAGTTTAATAT
1 TAATA--TTAAT-T
48553278 TAA-ATTTAATT
1 TAATA-TTAATT
48553289 TAATACTT-ATCT
1 TAATA-TTAAT-T
48553301 TAATATT-ATT
1 TAATATTAATT
48553311 T--TATTAATT
1 TAATATTAATT
48553320 TAATATTAA
1 TAATATTAA
48553329 ACGATTATCT
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 21 0.38
12 15 0.27
13 5 0.09
14 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:48553342 original size:38 final size:37
Alignment explanation
Indices: 48553275--48553346 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
48553265 AATAGTTTAA
48553275 TATTAAATTTAATTTAATACTTATCTTAATATTATTT
1 TATTAAATTTAATTTAATACTTATCTTAATATTATTT
48553312 TATT-AATTTAATATTAA-ACGATTATCTTAATATTA
1 TATTAAATTTAAT-TTAATAC--TTATCTTAATATTA
48553347 AATTTAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
36 10 0.31
37 8 0.25
38 14 0.44
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.53
Consensus pattern (37 bp):
TATTAAATTTAATTTAATACTTATCTTAATATTATTT
Found at i:48553427 original size:62 final size:60
Alignment explanation
Indices: 48553338--48553455 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 60
48553328 AACGATTATC
* * * * *
48553338 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAAATTAATCTAATATTTATCTTG-A-ATAAACATTATATTAATTTAATAAGAT
*
48553400 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAATATTATATTAATTTAATA
1 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATA
48553456 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
60 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (60 bp):
TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATAAGAT
Found at i:48559624 original size:38 final size:40
Alignment explanation
Indices: 48559552--48559634 Score: 145
Period size: 38 Copynumber: 2.1 Consensus size: 40
48559542 CATCTGCTAC
48559552 ATAAA-AAAAATTATTGGGATAAAAAATGGTTTTGAAAAA
1 ATAAATAAAAATTATTGGGATAAAAAATGGTTTTGAAAAA
48559591 A-AAATAAAAATTATTGGGAT-AAAAATGGTTTTGAAAAA
1 ATAAATAAAAATTATTGGGATAAAAAATGGTTTTGAAAAA
48559629 ATAAAT
1 ATAAAT
48559635 GAGATGGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
38 22 0.52
39 20 0.48
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (40 bp):
ATAAATAAAAATTATTGGGATAAAAAATGGTTTTGAAAAA
Found at i:48559642 original size:23 final size:24
Alignment explanation
Indices: 48559615--48559660 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
48559605 TGGGATAAAA
48559615 ATGGTTTTG-AAAAAATAAATGAG
1 ATGGTTTTGAAAAAAATAAATGAG
48559638 ATGGTTTTGAAAAAAATAAATGA
1 ATGGTTTTGAAAAAAATAAATGA
48559661 TTGACTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (24 bp):
ATGGTTTTGAAAAAAATAAATGAG
Found at i:48560414 original size:111 final size:111
Alignment explanation
Indices: 48560219--48560526 Score: 287
Period size: 110 Copynumber: 2.8 Consensus size: 111
48560209 AAGAACATCA
* * * *
48560219 TTAGCGGCGT-TTAC-AACCACGCGCCGC-AAAATCTCCTATCCAAACGCAAT-G-TTTTCGTCT
1 TTAGCGGCGTATTACGAA--ACGCGCCGCAAAAATATCCTA-ACAAACGC-ATCGTTTTTAGTGT
* * * * *
48560279 TTATGTATGCAAGAATTAGTGGCGCTTC-AAAAACATGCCGC-AAAGTGTC
62 TGATGTATCCTAGAATTAGTGGCGCTTCTAAAAA-ACGCCGCGAAAGCGTC
* * ** *
48560328 TTAGCGGCGTTTTAC-ACCAACGCGCCG-TAATTTCTCCTAACCAAAACGCATCGTTTTTAGTGT
1 TTAGCGGCGTATTACGA--AACGCGCCGCAAAAATATCCTAA-C-AAACGCATCGTTTTTAGTGT
48560391 TGAT-TATCCTAGAATTAGTGGCGCTTCTAAAAAACGCCGCGAAAGCGTC
62 TGATGTATCCTAGAATTAGTGGCGCTTCTAAAAAACGCCGCGAAAGCGTC
* * * * *
48560440 TTAGCGGCGTATTGCGATATGCGCCGCAAAAATATCTTAACAAACGCATCGTTTTTGGTGTTGAT
1 TTAGCGGCGTATTACGAAACGCGCCGCAAAAATATCCTAACAAACGCATCGTTTTTAGTGTTGAT
48560505 GTATCCTAG-ATTAGTGGCGCTT
66 GTATCCTAGAATTAGTGGCGCTT
48560527 GTGATATGCG
Statistics
Matches: 166, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
109 10 0.06
110 61 0.37
111 50 0.30
112 44 0.27
113 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (111 bp):
TTAGCGGCGTATTACGAAACGCGCCGCAAAAATATCCTAACAAACGCATCGTTTTTAGTGTTGAT
GTATCCTAGAATTAGTGGCGCTTCTAAAAAACGCCGCGAAAGCGTC
Found at i:48560909 original size:255 final size:258
Alignment explanation
Indices: 48560573--48561362 Score: 1149
Period size: 255 Copynumber: 3.0 Consensus size: 258
48560563 TCATAGAAAG
* *
48560573 CGCCACAAAATATCTTTACTAAAACGCGTAG-TTTAATTTTGATGTATACTTATATTAGTGGCGC
1 CGCCGCAAAATATCTTAACTAAAACGCGTAGTTTTAA-TTT--TG---ACTTATATTAGTGGCGC
48560637 TTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCT
60 TTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCT
48560702 TAACAAAACGCAGTGTTTGGT-TTAAGCTATG-TACATTTAGTGGCGCTTATAGGAAAACGCCGC
125 TAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGC
* *
48560765 AAAAAATTCTGAACC-AAACGCATCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACG
190 AAAATA-TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGT-GCGCTGACG
48560829 TTAAAA
253 TTAAAA
48560835 CGCCGCAAAATATC-TAACTAAAACGCGTAGTTTTAATTTTGA-TTATATTAGTGGCGCTTACTA
1 CGCCGCAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGACTTATATTAGTGGCGCTTACTA
*
48560898 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTAACTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
48560963 AACGCAGTG-TTGGTCTTAAGCTA-GTTACA-TTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
*
48561025 TCTGAACCAAAAACGCACCATTTTGGTCTCGA-GTATACTTCAATTAGTGCGGCTGACGTCTAAA
196 TCTGAACC-AAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGC-GCTGACGT-TAAA
48561089 A
258 A
* *
48561090 CGTCGCAAAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTTATACTTATATTA-TGGC
1 CGCCGC-AAAATATCTTAACTAAAACGCGTAGTTTTAA-TTT--TG----ACTTATATTAGTGGC
* * * * *
48561154 GCTTACTAGAAAAACGCCGTTAAAG-AT-GCCTTAGCAGCACTTGATCCAAAGTGCCGCAACGTA
58 GCTTACTAG-AAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTA
* *
48561217 TCTTAACAAAACGTAGTGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGC
122 TCTTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGC
* *
48561282 TGCAAAATATCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGCG-TGAC
187 CGCAAAATATCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGCGCTGAC
48561346 GTTAAAA
252 GTTAAAA
48561353 CGCCGCAAAA
1 CGCCGCAAAA
48561363 AAGCAAAATA
Statistics
Matches: 486, Mismatches: 20, Indels: 44
0.88 0.04 0.08
Matches are distributed among these distances:
253 10 0.02
254 62 0.13
255 136 0.28
256 9 0.02
257 21 0.04
258 3 0.01
259 2 0.00
260 2 0.00
261 18 0.04
262 22 0.05
263 57 0.12
264 35 0.07
265 51 0.10
266 58 0.12
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (258 bp):
CGCCGCAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGACTTATATTAGTGGCGCTTACTA
GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGCGCTGACGTTAAAA
Found at i:48561870 original size:14 final size:13
Alignment explanation
Indices: 48561851--48561898 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
48561841 GTAAGTTTGT
48561851 AGTTTAGGTTTAA
1 AGTTTAGGTTTAA
*
48561864 GAGTTTAAAGTTTAA
1 -AGTTT-AGGTTTAA
*
48561879 AGTTTACGGGTTAA
1 AGTTTA-GGTTTAA
48561893 AGTTTA
1 AGTTTA
48561899 AAGGTTACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 1 0.03
14 21 0.72
15 7 0.24
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (13 bp):
AGTTTAGGTTTAA
Found at i:48561877 original size:7 final size:7
Alignment explanation
Indices: 48561858--48561901 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
48561848 TGTAGTTTAG
48561858 GTTTAAGA
1 GTTTAA-A
48561866 GTTTAAA
1 GTTTAAA
48561873 GTTTAAA
1 GTTTAAA
**
48561880 GTTTACG
1 GTTTAAA
*
48561887 GGTTAAA
1 GTTTAAA
48561894 GTTTAAA
1 GTTTAAA
48561901 G
1 G
48561902 GTTACGGGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.39
Consensus pattern (7 bp):
GTTTAAA
Found at i:48561892 original size:21 final size:21
Alignment explanation
Indices: 48561868--48561917 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
48561858 GTTTAAGAGT
*
48561868 TTAAAGTTTAAAGTTTACGGG
1 TTAAAGTTTAAAGGTTACGGG
48561889 TTAAAGTTTAAAGGTTACGGG
1 TTAAAGTTTAAAGGTTACGGG
48561910 TTAAAGTT
1 TTAAAGTT
48561918 AGGGGCCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (21 bp):
TTAAAGTTTAAAGGTTACGGG
Found at i:48562432 original size:21 final size:22
Alignment explanation
Indices: 48562395--48562435 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
48562385 CCCCCTCTTG
48562395 ATTTCCCCAAATTCATTCCCTA
1 ATTTCCCCAAATTCATTCCCTA
*
48562417 ATTTCCCC-ATTTCATTCCC
1 ATTTCCCCAAATTCATTCCC
48562436 CCAATCCCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (22 bp):
ATTTCCCCAAATTCATTCCCTA
Found at i:48563262 original size:15 final size:15
Alignment explanation
Indices: 48563238--48563270 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
48563228 AAGGTTTCTA
*
48563238 TATTAGTATTAAATT
1 TATTACTATTAAATT
48563253 TATTACTATTAAATT
1 TATTACTATTAAATT
48563268 TAT
1 TAT
48563271 AAATAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TATTACTATTAAATT
Found at i:48563617 original size:9 final size:8
Alignment explanation
Indices: 48563572--48563659 Score: 72
Period size: 9 Copynumber: 10.4 Consensus size: 8
48563562 CTACATAATA
48563572 AATTACAT
1 AATTACAT
48563580 AATAATACAT
1 AAT--TACAT
*
48563590 ACTTACAT
1 AATTACAT
*
48563598 AAATTAAAT
1 -AATTACAT
48563607 AAGTTACAT
1 AA-TTACAT
*
48563616 AA-TACACA
1 AATTACA-T
48563624 AATTACAT
1 AATTACAT
48563632 AACTTACAT
1 AA-TTACAT
48563641 AA-TACAT
1 AATTACAT
48563648 AATTTACAT
1 AA-TTACAT
48563657 AAT
1 AAT
48563660 ACACAACTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
7 11 0.17
8 15 0.23
9 32 0.49
10 7 0.11
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.33
Consensus pattern (8 bp):
AATTACAT
Found at i:48563627 original size:25 final size:25
Alignment explanation
Indices: 48563593--48563646 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
48563583 AATACATACT
* *
48563593 TACATAAATTAAATAAGTTACATAA
1 TACACAAATTAAATAACTTACATAA
*
48563618 TACACAAATTACATAACTTACATAA
1 TACACAAATTAAATAACTTACATAA
48563643 TACA
1 TACA
48563647 TAATTTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.30
Consensus pattern (25 bp):
TACACAAATTAAATAACTTACATAA
Found at i:48563646 original size:16 final size:16
Alignment explanation
Indices: 48563627--48563674 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
48563617 ATACACAAAT
48563627 TACATAACTTACATAA
1 TACATAACTTACATAA
*
48563643 TACATAATTTACATAA
1 TACATAACTTACATAA
* *
48563659 TACACAACTGACATAA
1 TACATAACTTACATAA
48563675 CTTACANNNN
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.29
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:48574709 original size:43 final size:44
Alignment explanation
Indices: 48574652--48574735 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
48574642 AGATACTCGG
* * *
48574652 TGGATTCATCACATAG-AAACACCTTATTAATCAATGATGTCGA
1 TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGTCGA
*
48574695 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGT
48574736 TCGGTTCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 14 0.39
44 22 0.61
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (44 bp):
TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGTCGA
Found at i:48574808 original size:51 final size:51
Alignment explanation
Indices: 48574737--48575032 Score: 280
Period size: 51 Copynumber: 5.9 Consensus size: 51
48574727 CAATGATGTT
* * * *
48574737 CGGTTCACATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * **
48574788 CGATACACGTAGTAGCCTGCACATAGTGCTACACACGTGATCGA-AATTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATC
* ** * * *
48574839 TGGTATGCATAGTAGCCTGCACATAGTA-TACACATGTTACCATT-CCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
* * * * *
48574888 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGA-AACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATC
** * * * *
48574939 CGGTATGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATTA--TTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-ATTACCATC
48574989 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
48575033 CACTTTCACT
Statistics
Matches: 190, Mismatches: 48, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
49 29 0.15
50 58 0.31
51 100 0.53
52 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATC
Found at i:48574902 original size:100 final size:101
Alignment explanation
Indices: 48574744--48575028 Score: 441
Period size: 100 Copynumber: 2.8 Consensus size: 101
48574734 GTTCGGTTCA
* *
48574744 CATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATT-CCATCCGATACACGTAGTAGCCTGCA
* * *
48574809 CATAGTGCTACACACGTGATCGAAATTATCTGGTATG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTATG
* *
48574846 CATAGTAGCCTGCACATAGTA-TACACATGTTACCATTCCATCCGATACACGTAGTAGCCTACAC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTCCATCCGATACACGTAGTAGCCTGCAC
48574910 ATAGTACTACACACGTGATCGAAACTATCCGGTATG
66 ATAGTACTACACACGTGATCGAAACTATCCGGTATG
* *
48574946 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATT--ATTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACC-ATTCCA-TCCGATACACGTAGTAGCCTGC
48575009 ACATAGTACTACACACGTGA
64 ACATAGTACTACACACGTGA
48575029 CCATCACTTT
Statistics
Matches: 169, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
100 81 0.48
101 65 0.38
102 23 0.14
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATTCCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTATG
Found at i:48580631 original size:37 final size:36
Alignment explanation
Indices: 48580580--48580687 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 36
48580570 ATTCCAAAAA
*
48580580 TAATA-TTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATACTTATCTTAATA-TTTAATATT-AATTTAATAT
**
48580616 TAATACTTATCTTAATATTATTTTATTAATTTAATAT
1 TAATACTTATCTTAATATT-TAATATTAATTTAATAT
* *
48580653 TAAAACGATTATCTTAATATTAAAT-TTAATTTAAT
1 TAATAC--TTATCTTAATATTTAATATTAATTTAAT
48580688 GTTTATCTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
36 15 0.25
37 31 0.52
38 1 0.02
39 13 0.22
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (36 bp):
TAATACTTATCTTAATATTTAATATTAATTTAATAT
Found at i:48580653 original size:11 final size:11
Alignment explanation
Indices: 48580580--48580655 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
48580570 ATTCCAAAAA
*
48580580 TAATATTATTT
1 TAATATTAATT
48580591 TAATAGTTTAATAT
1 TAATA--TTAAT-T
48580605 TAA-ATTTAATT
1 TAATA-TTAATT
48580616 TAATACTT-ATCT
1 TAATA-TTAAT-T
48580628 TAATATT-ATT
1 TAATATTAATT
48580638 T--TATTAATT
1 TAATATTAATT
48580647 TAATATTAA
1 TAATATTAA
48580656 AACGATTATC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 21 0.38
12 15 0.27
13 5 0.09
14 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:48580669 original size:39 final size:37
Alignment explanation
Indices: 48580602--48580674 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
48580592 AATAGTTTAA
*
48580602 TATTAAATTTAATTTAATACTTATCTTAATATTATTT
1 TATTAAATTTAATTTAAAACTTATCTTAATATTATTT
48580639 TATT-AATTTAATATTAAAACGATTATCTTAATATTA
1 TATTAAATTTAAT-TTAAAAC--TTATCTTAATATTA
48580675 AATTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 8 0.25
37 10 0.31
39 14 0.44
ACGTcount: A:0.41, C:0.05, G:0.01, T:0.52
Consensus pattern (37 bp):
TATTAAATTTAATTTAAAACTTATCTTAATATTATTT
Found at i:48580735 original size:62 final size:60
Alignment explanation
Indices: 48580666--48580783 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 60
48580656 AACGATTATC
* * * * *
48580666 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAAATTAATCTAATATTTATCTTG-A-ATAAACATTATATTAATTTAATAAGAT
*
48580728 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAATATTATATTAATTTAATA
1 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATA
48580784 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
60 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (60 bp):
TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATAAGAT
Found at i:48585143 original size:2 final size:2
Alignment explanation
Indices: 48585136--48585160 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
48585126 TCTTTAAGTT
48585136 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
48585161 TAAATGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48586993 original size:40 final size:41
Alignment explanation
Indices: 48586919--48586998 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
48586909 ACATAATAAA
48586919 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
1 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
48586960 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAA
1 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAA
48586999 TGAGATGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (41 bp):
AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
Found at i:48587007 original size:23 final size:24
Alignment explanation
Indices: 48586980--48587026 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
48586970 GGGATAAAAA
48586980 ATGGTTTTG-AAAAAATAAATGAG
1 ATGGTTTTGAAAAAAATAAATGAG
48587003 ATGGTTTTGAAAAAAAATAAATGA
1 ATGGTTTTG-AAAAAAATAAATGA
48587027 TTGACTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
25 13 0.59
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (24 bp):
ATGGTTTTGAAAAAAATAAATGAG
Found at i:48587884 original size:114 final size:114
Alignment explanation
Indices: 48587657--48587971 Score: 372
Period size: 113 Copynumber: 2.8 Consensus size: 114
48587647 AAGAACATCA
* * *
48587657 TTAGCGGCG-TTTACAACCACGCGCCGCAAAATCTCCTATCCAAAACGCAAT-G-TTTTCGTCTT
1 TTAGCGGCGTTTTACAACCACGCGCCGCAAAATCTCCTAACCAAAACGC-ATCGTTTTTAGTGTT
* * * * * *
48587719 TATGTATGCAAGAATTAGTGGCGCTTCAAAAAACATGCCGCTAAAGTGTC
65 GATGTATCCTAGAATTAGTGGCGCTTCAAAAAACACGCCGCGAAAGCGTC
* **
48587769 TTAGCGGCGTTTTAC-ACCAACGCGCCGTAATTTCTCCTAACCAAAACGCATCGTTTTTAGTGTT
1 TTAGCGGCGTTTTACAACC-ACGCGCCGCAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTT
48587833 GATGTATCCTAGAATTAGTGGCGCTTCTAAAAAA-ACGCCGCGAAAGCGTC
65 GATGTATCCTAGAATTAGTGGCGCTTC-AAAAAACACGCCGCGAAAGCGTC
* * * * * * * *
48587883 TTAGCGGCGTATTGCGA-TATGCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTGGTGTTG
1 TTAGCGGCGTTTTACAACCACGCGCCGCAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
*
48587947 ATGTATCCTAGATTTAGTGGCGCTT
66 ATGTATCCTAGAATTAGTGGCGCTT
48587972 TGTGATATGC
Statistics
Matches: 174, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
112 14 0.08
113 95 0.55
114 58 0.33
115 7 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (114 bp):
TTAGCGGCGTTTTACAACCACGCGCCGCAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
ATGTATCCTAGAATTAGTGGCGCTTCAAAAAACACGCCGCGAAAGCGTC
Found at i:48588621 original size:77 final size:76
Alignment explanation
Indices: 48588447--48588625 Score: 195
Period size: 77 Copynumber: 2.3 Consensus size: 76
48588437 TATGTTACAT
**
48588447 TTAGTGGCGCTTA-TAGGAAAACGCCGCAAAATATCTGAACCAAAACGCACCATTTTGGTCTCGA
1 TTAGTGGCGCTTACTA-GAAAACGCCGCAAAATATCTGAACCAAAACGCACCATTTTAATCTCGA
48588511 TGTATACTTCAA
65 TGTATACTTCAA
* * * * ** * *
48588523 TTAGTGGCGCTGACGT-TAAAACGTCGCAAAAATATCTTAACCAAAACGC-GTAGTTTTAATTTT
1 TTAGTGGCGCTTAC-TAGAAAACGCCGC-AAAATATCTGAACCAAAACGCACCA-TTTTAATCTC
48588586 GATGTATACTT-ATA
63 GATGTATACTTCA-A
48588600 TTAGTGGCGCTTACTAGAAAACGCCG
1 TTAGTGGCGCTTACTAGAAAACGCCG
48588626 TTAAAGAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
76 24 0.29
77 59 0.70
78 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (76 bp):
TTAGTGGCGCTTACTAGAAAACGCCGCAAAATATCTGAACCAAAACGCACCATTTTAATCTCGAT
GTATACTTCAA
Found at i:48588736 original size:266 final size:266
Alignment explanation
Indices: 48588026--48588820 Score: 1406
Period size: 259 Copynumber: 3.0 Consensus size: 266
48588016 AAAGCGCCAC
*
48588026 AAAATATCTTTACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
1 AAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
48588091 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
*
48588156 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAAAA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
*
48588221 TCTGAACCAAAACGCATCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
196 TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
48588286 GCCGCA
261 GCCGCA
48588292 AAAATATCTTAACTAAAACGCGTAGTTTTAA-TTT--TG---A-TTATATTAGTGGCGCTTACTA
1 AAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
*
48588350 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTAACTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
48588415 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
*
48588480 TCTGAACCAAAACGCACCATTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
196 TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
*
48588545 GTCGCA
261 GCCGCA
*
48588551 AAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
1 AAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
* * * *
48588616 GAAAACGCCGTTAAAGAATAGCTTTAGCAGCACTTGATCCAAAGTGCCGCAACGTATCTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
* * *
48588681 AACGTAGTGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCTGCAAAATA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
*
48588746 TCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
196 TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
48588811 GCCGCA
261 GCCGCA
48588817 AAAA
1 AAAA
48588821 AGCAAAATAC
Statistics
Matches: 504, Mismatches: 18, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
259 247 0.49
260 4 0.01
262 2 0.00
263 2 0.00
265 4 0.01
266 245 0.49
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (266 bp):
AAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAATA
TCTGAACCAAAACGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
GCCGCA
Found at i:48589413 original size:21 final size:22
Alignment explanation
Indices: 48589378--48589418 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
48589368 TAAGGTTACG
48589378 AGTTTAGAGTGTAAG-GTTTGT
1 AGTTTAGAGTGTAAGAGTTTGT
* *
48589399 AGTTTAGGGTTTAAGAGTTT
1 AGTTTAGAGTGTAAGAGTTT
48589419 AAAGTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (22 bp):
AGTTTAGAGTGTAAGAGTTTGT
Found at i:48589419 original size:15 final size:14
Alignment explanation
Indices: 48589399--48589448 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
48589389 TAAGGTTTGT
48589399 AGTTTAGGGTTTAA
1 AGTTTAGGGTTTAA
**
48589413 GAGTTTAAAGTTTAA
1 -AGTTTAGGGTTTAA
*
48589428 AGGTTACGGGTTTAA
1 AGTTTA-GGGTTTAA
48589443 AGTTTA
1 AGTTTA
48589449 AAGGTTACGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 5 0.18
15 23 0.82
ACGTcount: A:0.32, C:0.02, G:0.26, T:0.40
Consensus pattern (14 bp):
AGTTTAGGGTTTAA
Found at i:48589424 original size:22 final size:21
Alignment explanation
Indices: 48589399--48589455 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
48589389 TAAGGTTTGT
*
48589399 AGTTTAGGGTTTAAGAGTTTAA
1 AGTTTAAGG-TTAAGAGTTTAA
* *
48589421 AGTTTAAAGGTTACGGGTTTAA
1 AGTTT-AAGGTTAAGAGTTTAA
48589443 AGTTTAAAGGTTA
1 AGTTT-AAGGTTA
48589456 CGGGTTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (21 bp):
AGTTTAAGGTTAAGAGTTTAA
Found at i:48589425 original size:29 final size:30
Alignment explanation
Indices: 48589369--48589451 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 30
48589359 TTTTGAGTGT
* * * *
48589369 AAGGTTACGAGTTT-AGAGTGTAAGGTTTG
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
* *
48589398 TAGTTTA-GGGTTTAAGAGTTTAAAGTTTA
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
48589427 AAGGTTACGGGTTTAA-AGTTTAAAG
1 AAGGTTACGGGTTTAAGAGTTTAAAG
48589452 GTTACGGGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 5 0.11
29 31 0.70
30 8 0.18
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.37
Consensus pattern (30 bp):
AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
Found at i:48589454 original size:15 final size:15
Alignment explanation
Indices: 48589406--48589454 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
48589396 TGTAGTTTAG
48589406 GGTTTAAGAGTTTAAA
1 GGTTTAA-AGTTTAAA
* **
48589422 -GTTTAAAGGTTACG
1 GGTTTAAAGTTTAAA
48589436 GGTTTAAAGTTTAAA
1 GGTTTAAAGTTTAAA
48589451 GGTT
1 GGTT
48589455 ACGGGTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.39
Consensus pattern (15 bp):
GGTTTAAAGTTTAAA
Found at i:48589456 original size:22 final size:22
Alignment explanation
Indices: 48589415--48589467 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
48589405 GGGTTTAAGA
48589415 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
48589437 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
48589459 G-TTAAAGTT
1 GTTTAAAGTT
48589468 AGGGGCCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 8 0.26
22 23 0.74
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (22 bp):
GTTTAAAGTTTAAAGGTTACGG
Found at i:48591115 original size:15 final size:15
Alignment explanation
Indices: 48591091--48591123 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
48591081 AAGGTTTCTA
*
48591091 TATTAGTATTAAATT
1 TATTACTATTAAATT
48591106 TATTACTATTAAATT
1 TATTACTATTAAATT
48591121 TAT
1 TAT
48591124 AAATAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TATTACTATTAAATT
Found at i:48591326 original size:24 final size:26
Alignment explanation
Indices: 48591299--48591353 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
48591289 TATATATCTT
* *
48591299 ACATAATACATAAC-TACATAACAA-
1 ACATAATAAAGAACTTACATAACAAC
*
48591323 ACATAATAAAGAACTTACATAATAAC
1 ACATAATAAAGAACTTACATAACAAC
48591349 ACATA
1 ACATA
48591354 TCGTACATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 12 0.46
25 9 0.35
26 5 0.19
ACGTcount: A:0.58, C:0.18, G:0.02, T:0.22
Consensus pattern (26 bp):
ACATAATAAAGAACTTACATAACAAC
Found at i:48591475 original size:9 final size:9
Alignment explanation
Indices: 48591443--48591659 Score: 140
Period size: 9 Copynumber: 25.8 Consensus size: 9
48591433 TACATAATAA
48591443 TACAT-ACT
1 TACATAACT
*
48591451 TACATAAAT
1 TACATAACT
* *
48591460 TAAATAAGT
1 TACATAACT
48591469 TACATAA--
1 TACATAACT
* *
48591476 TACACAAAT
1 TACATAACT
48591485 TACATAACT
1 TACATAACT
48591494 TACATAA--
1 TACATAACT
*
48591501 TACATAATT
1 TACATAACT
48591510 TACATAA--
1 TACATAACT
*
48591517 TACACAACT
1 TACATAACT
*
48591526 GACATAACT
1 TACATAACT
48591535 TACATAA--
1 TACATAACT
**
48591542 TACATATTT
1 TACATAACT
48591551 TACATAACT
1 TACATAACT
48591560 TACATAA--
1 TACATAACT
*
48591567 GACATAACT
1 TACATAACT
*
48591576 TACATAAGT
1 TACATAACT
*
48591585 TTCATAA--
1 TACATAACT
*
48591592 TACACAACT
1 TACATAACT
*
48591601 GACATAACT
1 TACATAACT
**
48591610 TATTTAA--
1 TACATAACT
*
48591617 TACACAACT
1 TACATAACT
* *
48591626 TACACAGCT
1 TACATAACT
48591635 TACATAACT
1 TACATAACT
*
48591644 TACACAACT
1 TACATAACT
48591653 TACATAA
1 TACATAA
48591660 TAAATAACTT
Statistics
Matches: 161, Mismatches: 33, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
7 40 0.25
8 5 0.03
9 116 0.72
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (9 bp):
TACATAACT
Found at i:48591512 original size:25 final size:23
Alignment explanation
Indices: 48591439--48591595 Score: 116
Period size: 25 Copynumber: 6.3 Consensus size: 23
48591429 AAATTACATA
* *
48591439 ATAATACATACTTACATAAATTAA
1 ATAATACATA-ATACATAAATTAC
*
48591463 ATAAGTTACATAATACACAAATTAC
1 ATAA--TACATAATACATAAATTAC
*
48591488 ATAACTTACATAATACATAATTTAC
1 ATAA--TACATAATACATAAATTAC
* *
48591513 ATAATACACAACTGACATAACTTAC
1 ATAATACATAA-T-ACATAAATTAC
* *
48591538 ATAATACATATTTTACATAACTTAC
1 ATAATACATA--ATACATAAATTAC
* * *
48591563 ATAAGACATAACTTACATAAGTTTC
1 ATAATACATAA--TACATAAATTAC
48591588 ATAATACA
1 ATAATACA
48591596 CAACTGACAT
Statistics
Matches: 110, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
23 6 0.05
24 5 0.05
25 92 0.84
26 7 0.06
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.32
Consensus pattern (23 bp):
ATAATACATAATACATAAATTAC
Found at i:48591518 original size:41 final size:41
Alignment explanation
Indices: 48591444--48591582 Score: 167
Period size: 41 Copynumber: 3.4 Consensus size: 41
48591434 ACATAATAAT
* * *
48591444 ACAT-ACTTACATAAATTAAATAAGTTACATAATACACAAATT
1 ACATAACTTACAT-AA-TACATAATTTACATAATACACAAATG
*
48591486 ACATAACTTACATAATACATAATTTACATAATACACAACTG
1 ACATAACTTACATAATACATAATTTACATAATACACAAATG
* *
48591527 ACATAACTTACATAATACATATTTTACATAACTTACA-TAA-G
1 ACATAACTTACATAATACATAATTTACATAA--TACACAAATG
48591568 ACATAACTTACATAA
1 ACATAACTTACATAA
48591583 GTTTCATAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
41 68 0.78
42 7 0.08
43 12 0.14
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (41 bp):
ACATAACTTACATAATACATAATTTACATAATACACAAATG
Found at i:48591538 original size:50 final size:48
Alignment explanation
Indices: 48591484--48591641 Score: 154
Period size: 50 Copynumber: 3.2 Consensus size: 48
48591474 AATACACAAA
* *
48591484 TTACATAACTTACATAATACATAATTTACATAATACACAACTGACATAAC
1 TTACATAA--TACATAATACATAACTTACATAATACACAACTTACATAAC
* * * *
48591534 TTACATAATACATATTTTACATAACTTACATAAGACATAACTTACATAAG
1 TTACATAATACATA--ATACATAACTTACATAATACACAACTTACATAAC
* * ** * *
48591584 TTTCATAATACACAACTGACATAACTTATTTAATACACAACTTACACAGC
1 TTACATAATACATAA-T-ACATAACTTACATAATACACAACTTACATAAC
48591634 TTACATAA
1 TTACATAA
48591642 CTTACACAAC
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
48 6 0.07
49 1 0.01
50 80 0.92
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.32
Consensus pattern (48 bp):
TTACATAATACATAATACATAACTTACATAATACACAACTTACATAAC
Found at i:48591605 original size:25 final size:25
Alignment explanation
Indices: 48591502--48591659 Score: 122
Period size: 25 Copynumber: 6.2 Consensus size: 25
48591492 CTTACATAAT
48591502 ACATAA-TTTACATAATACACAACTG
1 ACATAACTTT-CATAATACACAACTG
* * ** *
48591527 ACATAACTTACATAATACATATTTT
1 ACATAACTTTCATAATACACAACTG
* * * *
48591552 ACATAACTTACATAAGACATAACTT
1 ACATAACTTTCATAATACACAACTG
*
48591577 ACATAAGTTTCATAATACACAACTG
1 ACATAACTTTCATAATACACAACTG
* *
48591602 ACATAACTTAT-TTAATACACAACTT
1 ACATAACTT-TCATAATACACAACTG
* * * *
48591627 ACACAGCTTACATAACTTACACAACTT
1 ACATAACTTTCATAA--TACACAACTG
48591654 ACATAA
1 ACATAA
48591660 TAAATAACTT
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
25 89 0.84
26 3 0.03
27 14 0.13
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (25 bp):
ACATAACTTTCATAATACACAACTG
Found at i:48591643 original size:18 final size:18
Alignment explanation
Indices: 48591448--48591659 Score: 101
Period size: 16 Copynumber: 12.6 Consensus size: 18
48591438 AATAATACAT
* * *
48591448 ACTTACATAAATTAAATA
1 ACTTACATAACTTACACA
*
48591466 AGTTACATAA--TACACA
1 ACTTACATAACTTACACA
* *
48591482 AATTACATAACTTACATA
1 ACTTACATAACTTACACA
* *
48591500 A--TACATAATTTACATA
1 ACTTACATAACTTACACA
* * *
48591516 A--TACACAACTGACATA
1 ACTTACATAACTTACACA
*
48591532 ACTTACATAA--TACATA
1 ACTTACATAACTTACACA
** *
48591548 TTTTACATAACTTACATA
1 ACTTACATAACTTACACA
* *
48591566 A--GACATAACTTACATA
1 ACTTACATAACTTACACA
* *
48591582 AGTTTCATAA--TACACA
1 ACTTACATAACTTACACA
* ***
48591598 ACTGACATAACTTATTTA
1 ACTTACATAACTTACACA
*
48591616 A--TACACAACTTACACA
1 ACTTACATAACTTACACA
*
48591632 GCTTACATAACTTACACA
1 ACTTACATAACTTACACA
48591650 ACTTACATAA
1 ACTTACATAA
48591660 TAAATAACTT
Statistics
Matches: 150, Mismatches: 32, Indels: 24
0.73 0.16 0.12
Matches are distributed among these distances:
16 91 0.61
18 59 0.39
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (18 bp):
ACTTACATAACTTACACA
Found at i:48597156 original size:21 final size:21
Alignment explanation
Indices: 48597126--48597194 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
48597116 CAACAACTTA
* * *
48597126 AAGCACAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
** *
48597147 AAGCAGAGGCTACAGTGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
48597168 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
48597189 AAGCAG
1 AAGCAG
48597195 CGATAGAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.42, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:48597680 original size:42 final size:41
Alignment explanation
Indices: 48597627--48597879 Score: 217
Period size: 42 Copynumber: 6.0 Consensus size: 41
48597617 GCATTTGTGA
48597627 AACAAGCGCCGCTAAAGAACACTACT-TTTAGCGGCGTTTTT
1 AACAAGCGCCGCTAAAGAACA-TACTCTTTAGCGGCGTTTTT
*
48597668 GAACAAGCGCCGCTAAAGAACACTACT-TTTAGAGGCGTTTTCT
1 -AACAAGCGCCGCTAAAGAACA-TACTCTTTAGCGGCGTTTT-T
**
48597711 TCCAAAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTTT
1 AAC-AAGCGCCGCTAAAGAACAT-ACTCTTTAGCGGCGTTTTT
** * **
48597753 TCCTAAGCACCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT
1 AAC-AAGCGCCGCTAAAGAACATACTCTTTAGCGGCG-TTTTT
* * * *
48597796 CATAAGCGCCGCGAAAGAACATGA-TCTTTAGTGGCGTGTATTT
1 AACAAGCGCCGCTAAAGAACAT-ACTCTTTAGCGGCGT-T-TTT
***** *
48597839 TTTTTGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTT
1 AACAAGCGCCGCTAAAGAACATACTCTTTAGCGGCGTTTTT
48597880 TTCTGTAAGC
Statistics
Matches: 181, Mismatches: 20, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
41 4 0.02
42 107 0.59
43 70 0.39
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (41 bp):
AACAAGCGCCGCTAAAGAACATACTCTTTAGCGGCGTTTTT
Found at i:48597731 original size:85 final size:84
Alignment explanation
Indices: 48597630--48597880 Score: 253
Period size: 85 Copynumber: 3.0 Consensus size: 84
48597620 TTTGTGAAAC
*
48597630 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC-AAGCGCCGCTAAAGAACACT
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-AACTAAGCACCGCTAAAGAACA-T
48597692 ACT-TTTAGAGGCGTTTTCTTCCA-
62 ACTCTTTAGAGGCGTTTT-TT-CAT
** **
48597715 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCACCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAACTAAGCACCGCTAAAGAACATACTC
*
48597780 TTTAGCGGCGTTTTTTCAT
66 TTTAGAGGCGTTTTTTCAT
* * ** ** * *
48597799 AAGCGCCGCGAAAGAACATGATCTTTAGTGGCGTGTATTT-TTTTTGCGCCGCTAAAGAACATAA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGT-T-TTTAACTAAGCACCGCTAAAGAACATAC
*
48597863 TCTTTAGCGGCGTTTTTT
64 TCTTTAGAGGCGTTTTTT
48597881 TCTGTAAGCA
Statistics
Matches: 144, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.01
84 38 0.26
85 100 0.69
86 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAACTAAGCACCGCTAAAGAACATACTC
TTTAGAGGCGTTTTTTCAT
Found at i:48597803 original size:127 final size:129
Alignment explanation
Indices: 48597630--48597899 Score: 311
Period size: 127 Copynumber: 2.1 Consensus size: 129
48597620 TTTGTGAAAC
* *
48597630 AAGCGCCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCTAAAGAACACT-A-
1 AAGCACCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACA-TGAT
*
48597693 CTTTTAGAGGCGT-T-TTCTTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTC
65 C-TTTAGAGGCGTGTATT-TT-CAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTC
48597755 -CT
127 TCT
** ** *
48597757 AAGCACCGCTAAAGAACA-TGGTCTTTAGCGGCGTTTTTTCATAAGCGCCGCGAAAGAACATGAT
1 AAGCACCGCTAAAGAACACTACT-TTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACATGAT
* **** *
48597821 CTTTAGTGGCGTGTATTTTTTTTGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTGT
65 CTTTAGAGGCGTGTATTTTCAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTCT
*
48597886 AAGCACCGCAAAAG
1 AAGCACCGCTAAAG
48597900 TTAGCGACGT
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
126 3 0.02
127 91 0.75
128 11 0.09
129 16 0.13
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (129 bp):
AAGCACCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACATGATC
TTTAGAGGCGTGTATTTTCAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTCT
Found at i:48598495 original size:15 final size:15
Alignment explanation
Indices: 48598475--48598503 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
48598465 ATAGCAAATG
48598475 TTTGACTTAATTTTA
1 TTTGACTTAATTTTA
48598490 TTTGACTTAATTTT
1 TTTGACTTAATTTT
48598504 CAAGTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTGACTTAATTTTA
Found at i:48603138 original size:26 final size:26
Alignment explanation
Indices: 48603102--48603155 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
48603092 AGATTGACAG
48603102 TATATCAGACATGGCCTAATCTGAAT
1 TATATCAGACATGGCCTAATCTGAAT
48603128 TATATCAGACATGGCCTAATCTGAAT
1 TATATCAGACATGGCCTAATCTGAAT
48603154 TA
1 TA
48603156 ATCCTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (26 bp):
TATATCAGACATGGCCTAATCTGAAT
Found at i:48604877 original size:21 final size:21
Alignment explanation
Indices: 48604838--48604878 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
48604828 GGCCATAATG
*
48604838 ATGTTCATACATGCCATTAAC
1 ATGTTCATACATGCAATTAAC
*
48604859 ATGTTCATACATGGAATTAA
1 ATGTTCATACATGCAATTAA
48604879 AAGCCATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (21 bp):
ATGTTCATACATGCAATTAAC
Found at i:48612454 original size:30 final size:31
Alignment explanation
Indices: 48612413--48612480 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
48612403 ATTTCCGAGC
*
48612413 TTGGGGACAAAAGTGTAAA-TATGC-AAAAGT
1 TTGGGGGCAAAAGTG-AAATTATGCAAAAAGT
* * *
48612443 TTGGGGGCAAAATTGAAATTTTTCAAAAAGT
1 TTGGGGGCAAAAGTGAAATTATGCAAAAAGT
48612474 TTGGGGG
1 TTGGGGG
48612481 AGGACTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 3 0.09
30 16 0.50
31 13 0.41
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.28
Consensus pattern (31 bp):
TTGGGGGCAAAAGTGAAATTATGCAAAAAGT
Found at i:48612841 original size:26 final size:26
Alignment explanation
Indices: 48612807--48612856 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
48612797 GAATATAAAG
*
48612807 GGGGTTGCTAAGTGTTAATTCCCCAA
1 GGGGTTGCTAAGTGCTAATTCCCCAA
*
48612833 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTAATTCCCC
48612857 GAATCATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTAATTCCCCAA
Found at i:48612960 original size:102 final size:102
Alignment explanation
Indices: 48612804--48613033 Score: 356
Period size: 102 Copynumber: 2.3 Consensus size: 102
48612794 ATTGAATATA
*
48612804 AAGGGGGTTGCTAAGTGTTA-ATT-CCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGG
1 AAGGGGGTTGCTAAGTG-CAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGG
* * *
48612867 TGGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
65 TGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* *
48612905 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
48612970 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
* * *
48613007 AAAGGGGTTGCCAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCAGATTCCCC
48613034 GAATCACTGG
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
100 1 0.01
101 20 0.17
102 97 0.82
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG
Found at i:48618324 original size:16 final size:16
Alignment explanation
Indices: 48618303--48618348 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
48618293 TTATTAAATT
48618303 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
48618319 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
48618334 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
48618349 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:48618422 original size:120 final size:119
Alignment explanation
Indices: 48618209--48618465 Score: 496
Period size: 120 Copynumber: 2.1 Consensus size: 119
48618199 GGCAGTTGTC
48618209 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
48618274 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATA-TTTAATTATAATATATTTAA
48618329 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
1 TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
48618394 ATATTAATTATTAAGAATTTTATTAAATTATATATTTAATTATAATATATTTAA
66 ATATTAATTATTAAGAATTTTATTAAATTATATATTTAATTATAATATATTTAA
48618448 TAATAATTATGTTTAAAT
1 TAATAATTATG-TTAAAT
48618466 ATAATTAAAT
Statistics
Matches: 136, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
119 31 0.23
120 105 0.77
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (119 bp):
TAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGA
ATATTAATTATTAAGAATTTTATTAAATTATATATTTAATTATAATATATTTAA
Found at i:48618443 original size:15 final size:15
Alignment explanation
Indices: 48618423--48618470 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
48618413 TTATTAAATT
48618423 ATATATTTAATTATA
1 ATATATTTAATTATA
*
48618438 ATATATTTAATAATA
1 ATATATTTAATTATA
* *
48618453 ATTATGTTTAAATATA
1 A-TATATTTAATTATA
48618469 AT
1 AT
48618471 TAAATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATATATTTAATTATA
Found at i:48618469 original size:16 final size:16
Alignment explanation
Indices: 48618424--48618472 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
48618414 TATTAAATTA
*
48618424 TATATTTAATTATAA-
1 TATATTTAAATATAAT
48618439 TATATTT-AATAATAAT
1 TATATTTAAAT-ATAAT
*
48618455 TATGTTTAAATATAAT
1 TATATTTAAATATAAT
48618471 TA
1 TA
48618473 AATTATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 2 0.07
15 11 0.38
16 13 0.45
17 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
TATATTTAAATATAAT
Found at i:48618689 original size:45 final size:44
Alignment explanation
Indices: 48618607--48618697 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
48618597 ACCTCTATTC
* *
48618607 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
*** * *
48618651 CATTCAACCAAACAGTTGATTTGCTATTACATCTCTATTCAATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCAATTA
48618696 CA
1 CA
48618698 CCTCTATTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
Found at i:48618724 original size:16 final size:16
Alignment explanation
Indices: 48618676--48618729 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
48618666 TTGATTTGCT
* *
48618676 ATTACATCTCTATTCA
1 ATTACACCTCTATTCC
48618692 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
48618708 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
48618724 AATACA
1 ATTACA
48618730 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:48624203 original size:33 final size:33
Alignment explanation
Indices: 48624161--48624368 Score: 121
Period size: 33 Copynumber: 5.7 Consensus size: 33
48624151 ATATAAAGGG
48624161 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
48624194 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
* *
48624236 GGTTGCTAAGTGCTGATTCCCTGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* ** *
48624269 GGTTGCTAAGTGTTGA-TCCCACTGTGTCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCC-C-GAATC----AT-TG---GT
* *
48624311 GGTTGCTAAGTGTTGATACCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
48624344 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
48624369 TAAAGGACAA
Statistics
Matches: 135, Mismatches: 19, Indels: 41
0.69 0.10 0.21
Matches are distributed among these distances:
32 4 0.03
33 55 0.41
34 10 0.07
35 1 0.01
36 3 0.02
37 5 0.04
38 5 0.04
39 3 0.02
40 1 0.01
41 5 0.04
42 40 0.30
43 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:48624279 original size:75 final size:75
Alignment explanation
Indices: 48624156--48624367 Score: 325
Period size: 75 Copynumber: 2.8 Consensus size: 75
48624146 ATTGAATATA
48624156 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
*
48624221 TTTAAATGTG
66 CTTAAATGTG
* * * * * *
48624231 AAGGGGGTTGCTAAGTGCTGATTCCCTGACTCATTGGTGGTTGCTAAGTGTTGATCCCACTGTGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
48624296 CTTAAATGTG
66 CTTAAATGTG
* * * *
48624306 AAAGGGGTTGCTAAGTGTTGATACCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
48624368 ATAAAGGACA
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 121 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (75 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
CTTAAATGTG
Found at i:48628482 original size:24 final size:22
Alignment explanation
Indices: 48628446--48628508 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
48628436 GATCGGATGA
*
48628446 AATAAAAAGAATAATAACAGTAGT
1 AATAAAAAGAATAATAAC--TAAT
*
48628470 AATGAAAAGAAT-ATAACTAAT
1 AATAAAAAGAATAATAACTAAT
48628491 AATAAAAAGAATAGATAA
1 AATAAAAAGAATA-ATAA
48628509 TAACCAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 14 0.41
23 9 0.26
24 11 0.32
ACGTcount: A:0.65, C:0.03, G:0.11, T:0.21
Consensus pattern (22 bp):
AATAAAAAGAATAATAACTAAT
Found at i:48636997 original size:21 final size:22
Alignment explanation
Indices: 48636951--48636997 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
48636941 GAACTATTTC
* *
48636951 ATCAGTATCATCACCAGTGATT
1 ATCAGTATCATCAACAGTGATA
48636973 ATCA-TATCATCAACA-TAGATA
1 ATCAGTATCATCAACAGT-GATA
48636994 ATCA
1 ATCA
48636998 AGCATGTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCAGTATCATCAACAGTGATA
Found at i:48637908 original size:62 final size:63
Alignment explanation
Indices: 48637783--48637909 Score: 238
Period size: 62 Copynumber: 2.0 Consensus size: 63
48637773 TACATGAATA
48637783 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGAATATCCAGTGGGGTC
1 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGAATATCCAGTGGGGTC
*
48637846 ACTTCATCAGTGGGAGTATCAACAGAGTC-GGGGTACTTACCTCTTGGATATCCAGTGGGGTC
1 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGAATATCCAGTGGGGTC
48637908 AC
1 AC
48637910 CTCAGCAGGC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 34 0.54
63 29 0.46
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (63 bp):
ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGAATATCCAGTGGGGTC
Found at i:48640888 original size:17 final size:18
Alignment explanation
Indices: 48640849--48640889 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
48640839 CTAAATCTAC
*
48640849 AATTCTGTTGTAAACAGG
1 AATTCTGTTATAAACAGG
*
48640867 AATTCTGTTATGAACA-G
1 AATTCTGTTATAAACAGG
48640884 AATTCT
1 AATTCT
48640890 TATCTCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
AATTCTGTTATAAACAGG
Found at i:48642673 original size:21 final size:20
Alignment explanation
Indices: 48642632--48642701 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
48642622 AGGCTCGTCC
48642632 ATATTATTTTTTAAAATATAT
1 ATATTA-TTTTTAAAATATAT
**
48642653 ATATTATTTTTAATTTA-AT
1 ATATTATTTTTAAAATATAT
* *
48642672 ATTTTTATTTATTAAAATTTTAT
1 A-TATTATTT-TTAAAA-TATAT
48642695 ATATTAT
1 ATATTAT
48642702 CATCTTAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
19 3 0.08
20 16 0.42
21 10 0.26
22 6 0.16
23 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATTATTTTTAAAATATAT
Found at i:48644224 original size:20 final size:21
Alignment explanation
Indices: 48644195--48644244 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
48644185 AATAATCAAG
* *
48644195 GTATCGATAT-TTTAAGGCAT
1 GTATCAATATCTTTAAAGCAT
48644215 GTATCAATATCTTTAAAGCAT
1 GTATCAATATCTTTAAAGCAT
48644236 GTATCAATA
1 GTATCAATA
48644245 CCTAATGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (21 bp):
GTATCAATATCTTTAAAGCAT
Found at i:48650818 original size:19 final size:19
Alignment explanation
Indices: 48650790--48650827 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
48650780 ATTGATAGAT
48650790 TTTAAACTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
*
48650809 TTTAAGCTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
48650828 AAGGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (19 bp):
TTTAAACTTAAGAGTGAAA
Found at i:48653225 original size:14 final size:15
Alignment explanation
Indices: 48653201--48653229 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48653191 CCAATTTAAG
48653201 TTTTTATGAATTTTT
1 TTTTTATGAATTTTT
48653216 TTTTTA-GAATTTTT
1 TTTTTATGAATTTTT
48653230 ATAAGCTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTATGAATTTTT
Found at i:48653257 original size:9 final size:9
Alignment explanation
Indices: 48653243--48653453 Score: 64
Period size: 9 Copynumber: 22.7 Consensus size: 9
48653233 AGCTTATATC
48653243 AATTTTAAT
1 AATTTTAAT
48653252 AATTTTAATT
1 AATTTTAA-T
*
48653262 ATTTTTAATT
1 AATTTTAA-T
*
48653272 ATTTTTAATT
1 AATTTTAA-T
* *
48653282 ATTTTTTAAG
1 A-ATTTTAAT
48653292 AATTTTAAT
1 AATTTTAAT
*
48653301 -ATGTTT-TT
1 AAT-TTTAAT
* *
48653309 ACTTTAAAT
1 AATTTTAAT
48653318 -ATTTTAAAT
1 AATTTT-AAT
*
48653327 AAGTTTTATT
1 AA-TTTTAAT
48653337 AATTTT-AT
1 AATTTTAAT
*
48653345 AATTTT-TT
1 AATTTTAAT
* *
48653353 ACAATTTATT
1 A-ATTTTAAT
*
48653363 AGA-TTTATT
1 A-ATTTTAAT
48653372 ATATTGTTAAT
1 A-ATT-TTAAT
48653383 AATATTT-AT
1 AAT-TTTAAT
*
48653392 AAGTTTTCAT
1 AA-TTTTAAT
48653402 AATTTCT-AT
1 AATTT-TAAT
*
48653411 AAGTTTATAT
1 AATTTTA-AT
48653421 CAATTTTAAT
1 -AATTTTAAT
*
48653431 -ATTTT-TT
1 AATTTTAAT
48653438 AATTTTCAAT
1 AATTTT-AAT
48653448 AATTTT
1 AATTTT
48653454 TTTAATTTTT
Statistics
Matches: 159, Mismatches: 21, Indels: 43
0.71 0.09 0.19
Matches are distributed among these distances:
7 1 0.01
8 28 0.18
9 54 0.34
10 53 0.33
11 23 0.14
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
AATTTTAAT
Found at i:48653279 original size:20 final size:19
Alignment explanation
Indices: 48653245--48653350 Score: 80
Period size: 20 Copynumber: 5.7 Consensus size: 19
48653235 CTTATATCAA
48653245 TTTTAATAATTTTAATTAT
1 TTTTAATAATTTTAATTAT
*
48653264 TTTTAATTATTTTTAATTATT
1 TTTTAA-TAATTTTAATTA-T
*
48653285 TTTTAAGAATTTTAA-TAT
1 TTTTAATAATTTTAATTAT
* *
48653303 GTTTT--T-ACTTTAAATAT
1 -TTTTAATAATTTTAATTAT
* *
48653320 TTTAAATAAGTTTT-ATTAA
1 TTTTAATAA-TTTTAATTAT
48653339 TTTT-ATAATTTT
1 TTTTAATAATTTT
48653351 TTACAATTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
16 9 0.13
17 7 0.10
18 6 0.09
19 19 0.28
20 21 0.30
21 7 0.10
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTAATAATTTTAATTAT
Found at i:48653307 original size:10 final size:10
Alignment explanation
Indices: 48653245--48653287 Score: 70
Period size: 10 Copynumber: 4.4 Consensus size: 10
48653235 CTTATATCAA
*
48653245 TTTTAA-TAA
1 TTTTAATTAT
48653254 TTTTAATTAT
1 TTTTAATTAT
48653264 TTTTAATTAT
1 TTTTAATTAT
48653274 TTTTAATTAT
1 TTTTAATTAT
48653284 TTTT
1 TTTT
48653288 TAAGAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 6 0.19
10 26 0.81
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:48653449 original size:65 final size:62
Alignment explanation
Indices: 48653243--48653453 Score: 158
Period size: 65 Copynumber: 3.2 Consensus size: 62
48653233 AGCTTATATC
* * * * * * *
48653243 AATTTTAATAATTTTAATTATTTTTAATTATTTTTAATTATTTTTTAAGAATTTTAATATGTTTT
1 AATTTTAATAATTTTAATAAGTTTT-ATTAATTTT-ATAAGTTTAT-ACAATTTTAATAT-TTTT
48653308 T
62 T
* * * * * * *
48653309 ACTTTAAAT-ATTTTAAATAAGTTTTATTAATTTTATAATTTTTTACAATTTATTAGATTTATT
1 AATTTTAATAATTTT-AATAAGTTTTATTAATTTTATAAGTTTATACAATTT-TAATATTTTTT
48653372 ATATTGTTAATAATATTT-ATAAGTTTTCA-TAATTTCTATAAGTTTATATCAATTTTAATATTT
1 A-ATT-TTAATAAT-TTTAATAAGTTTT-ATTAATTT-TATAAGTTTATA-CAATTTTAATATTT
48653435 TTT
60 TTT
48653438 AATTTTCAATAATTTT
1 AATTTT-AATAATTTT
48653454 TTTAATTTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
63 11 0.09
64 20 0.17
65 41 0.35
66 37 0.31
67 9 0.08
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (62 bp):
AATTTTAATAATTTTAATAAGTTTTATTAATTTTATAAGTTTATACAATTTTAATATTTTTT
Found at i:48653472 original size:20 final size:18
Alignment explanation
Indices: 48653424--48653473 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
48653414 TTTATATCAA
48653424 TTTTAATA-TTTTTTAAT
1 TTTTAATATTTTTTTAAT
*
48653441 TTTCAATAATTTTTTTAATT
1 TTTTAAT-ATTTTTTTAA-T
48653461 TTTTAATCATTTT
1 TTTTAAT-ATTTT
48653474 ATAGGAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 6 0.22
18 1 0.04
19 8 0.30
20 12 0.44
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTAATATTTTTTTAAT
Found at i:48657545 original size:25 final size:25
Alignment explanation
Indices: 48657512--48657562 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 25
48657502 TAAATTATAG
48657512 TTTCATCC-TCAAAGTCTTTTTATTTT
1 TTTCATCCTTCAAAG--TTTTTATTTT
48657538 TTTC-TCCTTCAAAGTTTTTATTTT
1 TTTCATCCTTCAAAGTTTTTATTTT
48657562 T
1 T
48657563 ATTTTGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.46
25 3 0.12
26 10 0.42
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTCATCCTTCAAAGTTTTTATTTT
Found at i:48658612 original size:11 final size:10
Alignment explanation
Indices: 48658584--48658638 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
48658574 AATTAAAATG
48658584 TTAAAATAAA
1 TTAAAATAAA
*
48658594 TTTAAATAAA
1 TTAAAATAAA
48658604 TTAACAAT--A
1 TTAA-AATAAA
* *
48658613 TTGAAATAAG
1 TTAAAATAAA
*
48658623 TTGAAATAAA
1 TTAAAATAAA
48658633 TTAAAA
1 TTAAAA
48658639 ATGTGAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
8 3 0.08
9 4 0.11
10 26 0.72
11 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (10 bp):
TTAAAATAAA
Found at i:48658648 original size:29 final size:29
Alignment explanation
Indices: 48658574--48658649 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
48658564 ATAATATATG
* *
48658574 AATT-AAAATGTTAAAATAAATTTAAATA
1 AATTAAAAATGTGAAAATAAATTGAAATA
*
48658602 AATTAACAATAT-TG-AAATAAGTTGAAATA
1 AATTAA-AA-ATGTGAAAATAAATTGAAATA
48658631 AATTAAAAATGTGAAAATA
1 AATTAAAAATGTGAAAATA
48658650 TTTGAAAGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
27 2 0.05
28 8 0.20
29 25 0.62
30 3 0.08
31 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (29 bp):
AATTAAAAATGTGAAAATAAATTGAAATA
Found at i:48659089 original size:14 final size:14
Alignment explanation
Indices: 48659058--48659098 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
48659048 GTTAAATTTT
*
48659058 AAAATAAATATATCAA
1 AAAATAAA-A-ATAAA
48659074 AAAATAAAAATAAA
1 AAAATAAAAATAAA
48659088 AAAATAAAAAT
1 AAAATAAAAAT
48659099 GTAAACAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 15 0.62
15 1 0.04
16 8 0.33
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:48660619 original size:23 final size:23
Alignment explanation
Indices: 48660592--48660642 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
48660582 GAAGATTTTG
48660592 GCATATTCCCTGAAGCGAATATT
1 GCATATTCCCTGAAGCGAATATT
*
48660615 GCATA-TCCCTGAAGTGAATATT
1 GCATATTCCCTGAAGCGAATATT
*
48660637 ACATAT
1 GCATAT
48660643 AATTATTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (23 bp):
GCATATTCCCTGAAGCGAATATT
Found at i:48664201 original size:31 final size:31
Alignment explanation
Indices: 48664166--48664229 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
48664156 AAGTTCACTC
48664166 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
1 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
48664197 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
1 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
48664228 AA
1 AA
48664230 GCACTCACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (31 bp):
AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
Found at i:48667267 original size:6 final size:6
Alignment explanation
Indices: 48667259--48667338 Score: 72
Period size: 6 Copynumber: 12.5 Consensus size: 6
48667249 GAAAGAAAAT
* * *
48667259 AATAAT AATAATA AATAGAA AATAGAA AATAACA AACAAA AATAAT AAT-AA
1 AATAAA AATAA-A AATA-AA AATA-AA AATAA-A AATAAA AATAAA AATAAA
48667310 AATAAA AATAAA AATAAA GAACTAAA AAT
1 AATAAA AATAAA AATAAA -AA-TAAA AAT
48667339 GGGAAAATAG
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
5 4 0.06
6 29 0.46
7 25 0.40
8 5 0.08
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:48667313 original size:11 final size:11
Alignment explanation
Indices: 48667254--48667327 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 11
48667244 GAAATGAAAG
48667254 AAAATAATAATA
1 AAAATAA-AATA
*
48667266 ATAAT-AAATA
1 AAAATAAAATA
48667276 GAAAATAGAAAATA
1 -AAAAT--AAAATA
*
48667290 ACAAACAAAAATA
1 A-AAA-TAAAATA
*
48667303 ATAATAAAATA
1 AAAATAAAATA
48667314 AAAATAAAAATA
1 AAAAT-AAAATA
48667326 AA
1 AA
48667328 GAACTAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
10 4 0.08
11 15 0.31
12 14 0.29
13 8 0.16
14 8 0.16
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:48667335 original size:20 final size:19
Alignment explanation
Indices: 48667259--48667338 Score: 69
Period size: 20 Copynumber: 4.2 Consensus size: 19
48667249 GAAAGAAAAT
*
48667259 AATAATAATAATAAA-TAGAA
1 AATAAAAATAA-AAACTA-AA
48667279 AATAGAAAATAACAAAC-AAA
1 AATA-AAAATAA-AAACTAAA
*
48667299 AATAATAAT-AAAA-TAAA
1 AATAAAAATAAAAACTAAA
48667316 AATAAAAATAAAGAACTAAA
1 AATAAAAATAAA-AACTAAA
48667336 AAT
1 AAT
48667339 GGGAAAATAG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
17 14 0.28
18 3 0.06
19 6 0.12
20 17 0.34
21 10 0.20
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (19 bp):
AATAAAAATAAAAACTAAA
Found at i:48670133 original size:22 final size:23
Alignment explanation
Indices: 48670108--48670167 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
48670098 TGGACTGAAT
48670108 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
48670130 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
48670152 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
48670168 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:48670135 original size:4 final size:4
Alignment explanation
Indices: 48670117--48670150 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
48670107 TATAAAAATT
48670117 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
48670151 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:48671550 original size:23 final size:22
Alignment explanation
Indices: 48671499--48671550 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
48671489 CCTCGTCTTT
*
48671499 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
48671521 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
48671544 TTCTTTT
1 TTCTTTT
48671551 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:48671565 original size:18 final size:18
Alignment explanation
Indices: 48671544--48671582 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
48671534 TTTCTTCAAC
* *
48671544 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
48671562 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
48671580 TTC
1 TTC
48671583 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Done.