Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 167 of 199
Found at i:49088047 original size:22 final size:22
Alignment explanation
Indices: 49088022--49088077 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 22
49088012 TGGATTGATC
49088022 TAGTTCTTAGTTTGTGTTGTAA
1 TAGTTCTTAGTTTGTGTTGTAA
* * **
49088044 TAG-T-TTAATTT-TTTTGTTC
1 TAGTTCTTAGTTTGTGTTGTAA
49088063 TAGTTCTTAGTTTGT
1 TAGTTCTTAGTTTGT
49088078 TTATGCTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.31
20 7 0.27
21 7 0.27
22 4 0.15
ACGTcount: A:0.16, C:0.05, G:0.18, T:0.61
Consensus pattern (22 bp):
TAGTTCTTAGTTTGTGTTGTAA
Found at i:49088832 original size:25 final size:25
Alignment explanation
Indices: 49088785--49088836 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
49088775 AGGCATACCC
49088785 ATATTATTTAAAAATAATAATATTT
1 ATATTATTTAAAAATAATAATATTT
**
49088810 ATATTATTTTAAATTTAAT-ATATTT
1 ATATTA-TTTAAAAATAATAATATTT
49088835 AT
1 AT
49088837 TTACTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
ATATTATTTAAAAATAATAATATTT
Found at i:49090464 original size:14 final size:15
Alignment explanation
Indices: 49090440--49090472 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
49090430 AAGTCTAAGT
*
49090440 TTTATTATGTTATTC
1 TTTATTATGTTATTA
49090455 TTTA-TATGTTATTA
1 TTTATTATGTTATTA
49090469 TTTA
1 TTTA
49090473 AAATCTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (15 bp):
TTTATTATGTTATTA
Found at i:49091781 original size:37 final size:37
Alignment explanation
Indices: 49091734--49091813 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
49091724 TGTTTCAATT
* *
49091734 AAATTCAGAGTGCGTTTCGGAAATATAAAATTTTAAA
1 AAATTTAGAGTGCATTTCGGAAATATAAAATTTTAAA
*
49091771 AAATTTAGAGTGCATTTCGGAAATATAAAATTTTATA
1 AAATTTAGAGTGCATTTCGGAAATATAAAATTTTAAA
49091808 AAATTT
1 AAATTT
49091814 TCACAAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (37 bp):
AAATTTAGAGTGCATTTCGGAAATATAAAATTTTAAA
Found at i:49094293 original size:12 final size:11
Alignment explanation
Indices: 49094278--49094311 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
49094268 AAATGAGAAC
49094278 ACAAATAAATAA
1 ACAAATAAA-AA
49094290 ACAAATAAAAA
1 ACAAATAAAAA
49094301 ACAAA-AAAAA
1 ACAAATAAAAA
49094311 A
1 A
49094312 TATAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.27
11 7 0.32
12 9 0.41
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (11 bp):
ACAAATAAAAA
Found at i:49108692 original size:12 final size:13
Alignment explanation
Indices: 49108675--49108704 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
49108665 AAATTTAGAT
49108675 TATAAA-AAAATA
1 TATAAACAAAATA
49108687 TATAAACAAAATA
1 TATAAACAAAATA
49108700 TATAA
1 TATAA
49108705 TGCATTTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (13 bp):
TATAAACAAAATA
Found at i:49115367 original size:17 final size:17
Alignment explanation
Indices: 49115347--49115384 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
49115337 TTTGATTATA
49115347 AAATATGA-AAAATGTAT
1 AAATATGATAAAA-GTAT
*
49115364 AAATATTATAAAAGTAT
1 AAATATGATAAAAGTAT
49115381 AAAT
1 AAAT
49115385 GTACATACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (17 bp):
AAATATGATAAAAGTAT
Found at i:49115527 original size:3 final size:3
Alignment explanation
Indices: 49115519--49115566 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
49115509 ATATGTAAGT
49115519 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
49115567 TAACATAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49124332 original size:82 final size:82
Alignment explanation
Indices: 49124209--49124406 Score: 317
Period size: 82 Copynumber: 2.4 Consensus size: 82
49124199 TTGAGATGGT
* * * *
49124209 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTGGTTAACATCTTATTGCTATA
1 TAACATATTTTGTTTGTTTTTTTAAATGATTTGTTAAAATGGTTAGTTAACATCTTACTGCTATA
*
49124274 GGATAATTTTGTTAGCA
66 AGATAATTTTGTTAGCA
49124291 TAACATATTTTGTTTGTTTTTTTAAATGATTTGTTAAAATGGTTAGTTAACATCTTACTGCTATA
1 TAACATATTTTGTTTGTTTTTTTAAATGATTTGTTAAAATGGTTAGTTAACATCTTACTGCTATA
* *
49124356 AGATCATTTTGTTAGTA
66 AGATAATTTTGTTAGCA
*
49124373 TAACATATTTTGTTTG-TTTTTTAAATGATCTGTT
1 TAACATATTTTGTTTGTTTTTTTAAATGATTTGTT
49124407 GAAAGATGTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
81 17 0.16
82 91 0.84
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTTAAATGATTTGTTAAAATGGTTAGTTAACATCTTACTGCTATA
AGATAATTTTGTTAGCA
Found at i:49126453 original size:17 final size:17
Alignment explanation
Indices: 49126431--49126472 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
49126421 TAGTTAGGGG
*
49126431 TTTTAAATGTTTTTTAA
1 TTTTAAATATTTTTTAA
*
49126448 TTTTAATTATTTTTTAA
1 TTTTAAATATTTTTTAA
*
49126465 GTTTAAAT
1 TTTTAAAT
49126473 TCATTTGCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTAAATATTTTTTAA
Found at i:49126473 original size:18 final size:18
Alignment explanation
Indices: 49126440--49126478 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
49126430 GTTTTAAATG
*
49126440 TTTTTTAATTTTAATT-A
1 TTTTTTAATTTAAATTCA
49126457 TTTTTTAAGTTTAAATTCA
1 TTTTTTAA-TTTAAATTCA
49126476 TTT
1 TTT
49126479 GCTGACGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTTAATTTAAATTCA
Found at i:49127541 original size:3 final size:3
Alignment explanation
Indices: 49127523--49127584 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
49127513 AAATTTTAAA
* * * * *
49127523 AAT AAA AAT AAAT AAT AAT GAAA AAT AAAT AAT AAC AAT AAT AAT GAG
1 AAT AAT AAT -AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT AAT
49127571 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
49127585 GAACAAAATG
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
3 38 0.83
4 8 0.17
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:49129413 original size:51 final size:50
Alignment explanation
Indices: 49129358--49129527 Score: 190
Period size: 51 Copynumber: 3.5 Consensus size: 50
49129348 GCACCATTGT
* *
49129358 AACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTAC
1 AACTTCAGGGAAATAAGATTTGTAA-TTGTAGCTTTAATCTGTTCCACTGC
* * *
49129409 AACTTTTAGGGAAATAAGA----T--TTGTAGCTTTAATCTGCTCAACTGC
1 AAC-TTCAGGGAAATAAGATTTGTAATTGTAGCTTTAATCTGTTCCACTGC
* * * *
49129454 AACTTCAGGGAGATAAAATTCGTAATTTGTAGCTTTAATTTGTTCCACTGC
1 AACTTCAGGGAAATAAGATTTGTAA-TTGTAGCTTTAATCTGTTCCACTGC
49129505 AACTTCAGGGAAATAAGATTTGT
1 AACTTCAGGGAAATAAGATTTGT
49129528 TATCTTTAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
44 12 0.12
45 25 0.26
48 2 0.02
51 45 0.46
52 13 0.13
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35
Consensus pattern (50 bp):
AACTTCAGGGAAATAAGATTTGTAATTGTAGCTTTAATCTGTTCCACTGC
Found at i:49129573 original size:96 final size:96
Alignment explanation
Indices: 49129239--49129559 Score: 312
Period size: 96 Copynumber: 3.4 Consensus size: 96
49129229 GTTTTGCTGG
* ** * * *
49129239 TTGTAGCTTTAACCTATTCCATTGCAACTTCAGGGAGATAGGACTTAC-T-A-TGGTAGATTTAA
1 TTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA-TT-CGTAACTTGTAGCTTTAA
*** * * * * *
49129301 TCCAATCCATTGCAAC-TTCAGAGG-TATAGGAC
64 TCTGTTCCACTACAACTTTCAG-GGAAATAAGAT
* * * * *
49129333 TTGTTGCTTCAATCTGCACCATTGTAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATC
1 TTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGTAACTTGTAGCTTTAATC
*
49129398 TGTTCCACTACAACTTTTAGGGAAATAAGAT
66 TGTTCCACTACAACTTTCAGGGAAATAAGAT
* * * * *
49129429 TTGTAGCTTTAATCTGCTCAACTGCAACTTCAGGGAGATAAAATTCGTAATTTGTAGCTTTAATT
1 TTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGTAACTTGTAGCTTTAATC
*
49129494 TGTTCCACTGCAAC-TTCAGGGAAATAAGAT
66 TGTTCCACTACAACTTTCAGGGAAATAAGAT
* *
49129524 TTGTTATCTTTAATTTGCTCCATTGCAACTTCAGGG
1 TTG-TAGCTTTAATCTGCTCCATTGCAACTTCAGGG
49129560 TGACGAGACT
Statistics
Matches: 185, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
93 3 0.02
94 36 0.19
95 41 0.22
96 105 0.57
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (96 bp):
TTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGTAACTTGTAGCTTTAATC
TGTTCCACTACAACTTTCAGGGAAATAAGAT
Found at i:49129914 original size:44 final size:44
Alignment explanation
Indices: 49129478--49130390 Score: 501
Period size: 44 Copynumber: 20.0 Consensus size: 44
49129468 AAAATTCGTA
* * *
49129478 ATTTGTAGCTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * **
49129522 ATTTGTTATCTTTAATTTGCTCCATTGCAACTTCAGGGTGACGAG
1 ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * * *
49129567 ACTCGTATCTTCAATCTACTCCATTGCAACTTCAGGGAGATGAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * ** ** *
49129611 ATTTGTAACTTCAATCTAATCCACTATAACTTCAGAGAGATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
49129655 ATTTGCTATCTTCAATTTGCTCCACTTCAACTTCAAGGATATAAG
1 ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
**
49129700 ATTTGAAGCTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAGATAAGG
1 A--T-----TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA-G
* * * *
49129752 CTTGCTATAGTAGATTTAATCTGAC-CTACTGCAACTTCAGAGG-CAT-AG
1 -AT--T-T-GTAGCTTTAATCTG-CTCCACTGCAACTTCAG-GGAGATAAG
** * ***
49129800 AAGT-TATCGTTTCAATCTGCTCCACTGCAAACTTCAAAAAGATAAG
1 ATTTGTAGC-TTT-AATCTGCTCCACTGC-AACTTCAGGGAGATAAG
** * * * *
49129846 ATTTGCTATTTTTAA-CTTGGTCCACTACAATTTTAGGGAGATAAG
1 ATTTG-TAGCTTTAATC-TGCTCCACTGCAACTTCAGGGAGATAAG
* * **
49129891 GTTTGCAGCTTTAATCTGCTCCACTGCAACTTCAATGAGATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * *
49129935 ATTTGTAGCCTGTCTTCAATCTGCTCCACTGCAATTTTAGGTATATAAG
1 ATTTGTAG-C--T-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAG
** * * * *
49129984 ATTTGTTTATTTTTAACCTACTCCACTACAACTTCAAGGAGATAA-
1 ATTTG--TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * *
49130029 AGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAG
1 A-TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
49130074 ATTTGTTATCTCTGATCTACTCCACTGTAACTTCAGTGAGATAAG
1 ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
49130119 ATCTATAACTTCAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT-A-A-----G
* **
49130170 ATTTGTAGCTTTAATCTGCTCTACTGCAACTTCATAGAGATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
** *** ** *
49130214 ATTTGCTATATCCGATCTATTCCACTGTAACTTCAGGGAGATAAG
1 ATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * * *
49130259 ATTTGTAGCTTCAATATACTCTACTGCAACTTTAGAGAGATAAG
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * *
49130303 ATTCAT-TATAC-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAA
1 ATT--TGTA-GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* * *
49130348 ATTTGTGGCTTTAATCTACTCCACTGCAACTTCAAGGAGATAA
1 ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
49130391 AATTCGCCAT
Statistics
Matches: 660, Mismatches: 161, Indels: 96
0.72 0.18 0.10
Matches are distributed among these distances:
42 2 0.00
43 6 0.01
44 256 0.39
45 198 0.30
46 44 0.07
47 7 0.01
48 10 0.02
49 34 0.05
50 29 0.04
51 70 0.11
52 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
ATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG
Found at i:49129983 original size:93 final size:90
Alignment explanation
Indices: 49129813--49129988 Score: 205
Period size: 93 Copynumber: 1.9 Consensus size: 90
49129803 TTATCGTTTC
* *
49129813 AATCTGCTCCACTGCAAACTTCAAAAAGATAAGATTTGCTATTTTTAACTTGGTCCACTACAATT
1 AATCTGCTCCACTGCAAACTTCAAAAAGATAAGATTTGCTATTTTCAACTTGCTCCACTACAATT
*
49129878 TTAGGGAGATAAGGTTTGCAGCTTT
66 TTAGGGAGATAAGATTTGCAGCTTT
**
49129903 AATCTGCTCCACTGC-AACTTCAATGAGATAAGATTTG-TAGCCTGTCTTCAA-TCTGCTCCACT
1 AATCTGCTCCACTGCAAACTTCAAAAAGATAAGATTTGCTA---T-T-TTCAACT-TGCTCCACT
* * *
49129965 GCAATTTTAGGTATATAAGATTTG
60 ACAATTTTAGGGAGATAAGATTTG
49129989 TTTATTTTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
88 2 0.03
89 20 0.28
90 15 0.21
91 1 0.01
92 2 0.03
93 32 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (90 bp):
AATCTGCTCCACTGCAAACTTCAAAAAGATAAGATTTGCTATTTTCAACTTGCTCCACTACAATT
TTAGGGAGATAAGATTTGCAGCTTT
Found at i:49130020 original size:95 final size:89
Alignment explanation
Indices: 49129478--49130390 Score: 449
Period size: 89 Copynumber: 10.0 Consensus size: 89
49129468 AAAATTCGTA
* * * * * * *
49129478 ATTTGTAGCTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTTAATTTGCT
1 ATTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTACT
* ** * **
49129543 CCATTGCAACTTCAGGGTGACGAG
66 CCACTGCAACTTCAATGAGATAAG
* ** * * * * * * * * *
49129567 ACTCGTATCTTCAATCTACTCCATTGCAACTTCAGGGAGATGAGATTTG-TAACTTCAATCTAAT
1 ATTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTACT
**
49129631 CCACTATAACTTCAGA-GAGATAAG
66 CCACTGCAACTTCA-ATGAGATAAG
* * * * * * *
49129655 ATTTGCTATCTTCAATTTGCTCCACTTCAACTTCA-AGGATATAAGATTTGAAGCTTGTAGCTTT
1 ATTT-ATAGCTTTAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTT---G--T-TATCTTT
* **
49129719 AATCTATTCCACTGCAACTTCAGGGAGATAAGG
58 AATCTACTCCACTGCAACTTCAATGAGATAA-G
* * * *
49129752 CTTGCTATAGTAGATTTAATCTGAC-CTACTGCAACTTCAGAG-GCAT-AGA--AGTTATCGTTT
1 -AT--T-TA-TAGCTTTAATCTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGTTATC-TTT
* **
49129812 CAATCTGCTCCACTGCAAACTTCAAAAAGATAAG
58 -AATCTACTCCACTGC-AACTTCAATGAGATAAG
* ** * * * * * * * * *
49129846 ATTTGCTATTTTTAA-CTTGGTCCACTACAATTTTAGGGAGATAAGGTTTG-CAGCTTTAATCTG
1 ATTT-ATAGCTTTAATC-TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTA
49129909 CTCCACTGCAACTTCAATGAGATAAG
64 CTCCACTGCAACTTCAATGAGATAAG
* * * * *
49129935 ATTTGTAGCCTGTCTTCAATCTGCTCCACTGCAATTTTAG-GTATATAAGATTTGTTTATTTTTA
1 ATTTATAG-C--T-TT-AATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTG-TTATCTTTA
* * *
49129999 ACCTACTCCACTACAACTTCAAGGAGATAA-
59 ATCTACTCCACTGCAACTTCAATGAGATAAG
* * *
49130029 AGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTTATCTCTGATCTAC
1 A-TTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTAC
* *
49130094 TCCACTGTAACTTCAGTGAGATAAG
65 TCCACTGCAACTTCAATGAGATAAG
* * * * *
49130119 ATCTATAACTTCAATCTGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTGATTTGTAGCTTTAA
1 ATTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TT-TG---T-TATCTTTAA
* *
49130184 TCTGCTCTACTGCAACTTC-ATAGAGATAAG
60 TCTACTCCACTGCAACTTCAAT-GAGATAAG
* ** *** ** * * * * *
49130214 ATTTGCTATATCCGATCTATTCCACTGTAACTTCAGGGAGATAAGATTTG-TAGCTTCAATATAC
1 ATTT-ATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTAC
* *
49130278 TCTACTGCAACTTTAGA-GAGATAAG
65 TCCACTGCAACTTCA-ATGAGATAAG
* * * **
49130303 ATTCATTATA-C-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTG-TGGCTTTAATCT
1 A-T--TTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCT
*
49130365 ACTCCACTGCAACTTCAAGGAGATAA
63 ACTCCACTGCAACTTCAATGAGATAA
49130391 AATTCGCCAT
Statistics
Matches: 631, Mismatches: 137, Indels: 112
0.72 0.16 0.13
Matches are distributed among these distances:
88 31 0.05
89 261 0.41
90 74 0.12
91 16 0.03
92 12 0.02
93 35 0.06
94 21 0.03
95 86 0.14
96 62 0.10
97 1 0.00
98 1 0.00
100 4 0.01
101 25 0.04
102 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (89 bp):
ATTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTTAATCTACT
CCACTGCAACTTCAATGAGATAAG
Found at i:49130200 original size:140 final size:134
Alignment explanation
Indices: 49130002--49130390 Score: 421
Period size: 140 Copynumber: 2.9 Consensus size: 134
49129992 ATTTTTAACC
* *
49130002 TACTCCACTACAACTTCA-AGGAGATAA-AGT--TTATAGCTTTAATCTGCTCTACTGCAACTTC
1 TACTCCACTGCAACTTCAGA-GAGATAAGATTCATTATAGCTTTAATCTGCTCTACTGCAACTTC
49130063 AGAGAGATAAGATTTGTTATCTCTGATCTACTCCACTGTAACTTCAGTGAGATAAGATCTATAAC
65 AGAGAGATAAGATTTG-TATCTCTGATCTACTCCACTGTAACTTCAG-GAGATAAGATCTATAAC
*
49130128 TTCAATC
128 TTCAATA
* * * *
49130135 TGCTCCACTGCAGCTTCAGAGAGATAAGATTTGTGATTTGTAGCTTTAATCTGCTCTACTGCAAC
1 TACTCCACTGCAACTTCAGAGAGATAAGA--T-TCA-TTATAGCTTTAATCTGCTCTACTGCAAC
* * * * * *
49130200 TTCATAGAGATAAGATTTGCTATATCCGATCTATTCCACTGTAACTTCAGGGAGATAAGATTTGT
62 TTCAGAGAGATAAGATTTG-TATCTCTGATCTACTCCACTGTAACTTCA-GGAGATAAGATCTAT
*
49130265 AGCTTCAATA
125 AACTTCAATA
* * * *
49130275 TACTCTACTGCAACTTTAGAGAGATAAGATTCATTATA-C-TCAATCTGCTCCACTGCAACTTCA
1 TACTCCACTGCAACTTCAGAGAGATAAGATTCATTATAGCTTTAATCTGCTCTACTGCAACTTCA
* * ** * * *
49130338 GGGAGATAAAATTTGTGGCTTTAATCTACTCCACTGCAACTTCAAGGAGATAA
66 GAGAGATAAGATTTGTATCTCTGATCTACTCCACTGTAACTTC-AGGAGATAA
49130391 AATTCGCCAT
Statistics
Matches: 213, Mismatches: 33, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
133 50 0.23
134 37 0.17
135 1 0.00
136 4 0.02
137 3 0.01
138 1 0.00
140 116 0.54
141 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (134 bp):
TACTCCACTGCAACTTCAGAGAGATAAGATTCATTATAGCTTTAATCTGCTCTACTGCAACTTCA
GAGAGATAAGATTTGTATCTCTGATCTACTCCACTGTAACTTCAGGAGATAAGATCTATAACTTC
AATA
Found at i:49137092 original size:26 final size:27
Alignment explanation
Indices: 49137063--49137115 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
49137053 TAAAAATTTT
49137063 AAAAAATAAA-AA-AATAAATAATAATG
1 AAAAAATAAATAATAA-AAATAATAATG
*
49137089 -AAAAATAAATAATAACAATAATAATG
1 AAAAAATAAATAATAAAAATAATAATG
49137115 A
1 A
49137116 GAATAGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
25 9 0.39
26 12 0.52
27 2 0.09
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (27 bp):
AAAAAATAAATAATAAAAATAATAATG
Found at i:49137216 original size:4 final size:4
Alignment explanation
Indices: 49137191--49137240 Score: 73
Period size: 4 Copynumber: 12.5 Consensus size: 4
49137181 ATACAAAAAG
* * *
49137191 AATA AATG AATA AATG AATA AATA AATA CATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
49137239 AA
1 AA
49137241 AGCTTTCATG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:49139464 original size:17 final size:17
Alignment explanation
Indices: 49139444--49139479 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
49139434 ATCTATATAA
49139444 TTATATTTAAAAGTTTT
1 TTATATTTAAAAGTTTT
* *
49139461 TTATATTTTACAGTTTT
1 TTATATTTAAAAGTTTT
49139478 TT
1 TT
49139480 TAATATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.64
Consensus pattern (17 bp):
TTATATTTAAAAGTTTT
Found at i:49145775 original size:19 final size:19
Alignment explanation
Indices: 49145738--49145777 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
49145728 AAATATCTGG
*
49145738 TTGAATTTTAATGAAAATT
1 TTGAATTTTAATAAAAATT
49145757 TTGAATTTT-ATAAATAATT
1 TTGAATTTTAATAAA-AATT
49145776 TT
1 TT
49145778 TTTATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (19 bp):
TTGAATTTTAATAAAAATT
Found at i:49146945 original size:14 final size:17
Alignment explanation
Indices: 49146915--49146951 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
49146905 TATAGAAATG
49146915 AGTAATTGAATTAAAGT
1 AGTAATTGAATTAAAGT
49146932 -GTAATT-AA-TAAAGT
1 AGTAATTGAATTAAAGT
49146946 AGTAAT
1 AGTAAT
49146952 CATATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.32
15 7 0.37
16 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (17 bp):
AGTAATTGAATTAAAGT
Found at i:49151309 original size:15 final size:16
Alignment explanation
Indices: 49151289--49151323 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
49151279 TTCTGTTCCT
*
49151289 TTTTTTTTCTTTTT-A
1 TTTTTTTCCTTTTTCA
49151304 TTTTTTTCCTTTTTCA
1 TTTTTTTCCTTTTTCA
49151320 TTTT
1 TTTT
49151324 CTATCTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTTCCTTTTTCA
Found at i:49151907 original size:3 final size:3
Alignment explanation
Indices: 49151885--49151946 Score: 58
Period size: 3 Copynumber: 20.3 Consensus size: 3
49151875 TAGTCCTTTT
*
49151885 TTA TT- TTA TTA -TA TTA -TA TTA TTTG TTA TTA TTA TTA TTA TTGCA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT--A
49151930 TTA TATA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA T
49151947 ACTTATGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
2 6 0.12
3 36 0.72
4 5 0.10
5 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:49152159 original size:7 final size:7
Alignment explanation
Indices: 49152122--49152186 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
49152112 TTCATACATT
49152122 TTTTATA
1 TTTTATA
*
49152129 TTTTACA
1 TTTTATA
49152136 TTTTATACA
1 TTTTAT--A
*
49152145 TATATATA
1 T-TTTATA
49152153 TTTTATA
1 TTTTATA
*
49152160 TATTAT-
1 TTTTATA
49152166 TTTT-TA
1 TTTTATA
*
49152172 TTTTATT
1 TTTTATA
49152179 TTTTATA
1 TTTTATA
49152186 T
1 T
49152187 AATATATATT
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
5 1 0.02
6 7 0.16
7 29 0.64
8 2 0.04
9 2 0.04
10 4 0.09
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTATA
Found at i:49152162 original size:33 final size:34
Alignment explanation
Indices: 49152096--49152163 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 34
49152086 CGTATATCCA
* *
49152096 TTTATATTTTATAATATTCATACATTTTTTATAT
1 TTTACATTTTATAATATTCATACATTTTATATAT
*
49152130 TTTACATTTTATACATA-T-ATATATTTTATATAT
1 TTTACATTTTATA-ATATTCATACATTTTATATAT
49152163 T
1 T
49152164 ATTTTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 14 0.47
34 13 0.43
35 3 0.10
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (34 bp):
TTTACATTTTATAATATTCATACATTTTATATAT
Found at i:49152168 original size:12 final size:12
Alignment explanation
Indices: 49152144--49152186 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
49152134 CATTTTATAC
49152144 ATATATATATTTT
1 ATATAT-TATTTT
49152157 ATATATTATTTT
1 ATATATTATTTT
* *
49152169 TTATTTTATTTT
1 ATATATTATTTT
*
49152181 TTATAT
1 ATATAT
49152187 AATATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 21 0.78
13 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
ATATATTATTTT
Found at i:49153394 original size:15 final size:15
Alignment explanation
Indices: 49153374--49153411 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
49153364 TTAAGTATAG
49153374 CCACAAATGAGTGTA
1 CCACAAATGAGTGTA
49153389 CCACAAATGAGTGTA
1 CCACAAATGAGTGTA
*
49153404 CTACAAAT
1 CCACAAAT
49153412 ATTGAGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (15 bp):
CCACAAATGAGTGTA
Found at i:49156618 original size:18 final size:18
Alignment explanation
Indices: 49156580--49156615 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
49156570 TTATTATTTT
*
49156580 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
49156598 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
49156616 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:49156721 original size:10 final size:9
Alignment explanation
Indices: 49156692--49156717 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
49156682 AATTTATATT
49156692 AATATTTTA
1 AATATTTTA
49156701 AATATTTTA
1 AATATTTTA
49156710 AATATTTT
1 AATATTTT
49156718 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:49158054 original size:13 final size:13
Alignment explanation
Indices: 49158036--49158062 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49158026 ATCAACTACT
49158036 TGAATATTTTTGC
1 TGAATATTTTTGC
49158049 TGAATATTTTTGC
1 TGAATATTTTTGC
49158062 T
1 T
49158063 TAAATATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (13 bp):
TGAATATTTTTGC
Found at i:49160221 original size:16 final size:16
Alignment explanation
Indices: 49160200--49160237 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
49160190 TTTGATTCGC
49160200 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
49160216 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
49160232 CGTAAT
1 TGTAAT
49160238 AGGTAATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:49160311 original size:44 final size:46
Alignment explanation
Indices: 49160219--49160312 Score: 131
Period size: 44 Copynumber: 2.1 Consensus size: 46
49160209 ATAGAGGTGT
* *
49160219 AATGGAATAGAGGCGTAATAGGTAATCCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGACGTAATAGGTAATCCTTGTGTTTGGTTGAATGG
*
49160265 AATGGAATAGA-ACTGTAATA-GT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGAC-GTAATAGGTAATCCTTGTGTTTGGTTGAATGG
49160309 AATG
1 AATG
49160313 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 24 0.55
45 3 0.07
46 17 0.39
ACGTcount: A:0.30, C:0.05, G:0.29, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAGACGTAATAGGTAATCCTTGTGTTTGGTTGAATGG
Found at i:49160480 original size:26 final size:26
Alignment explanation
Indices: 49160451--49160565 Score: 86
Period size: 26 Copynumber: 4.3 Consensus size: 26
49160441 TTAATCATAT
49160451 TTTAACATAATTATTATTAAATATAA
1 TTTAACATAATTATTATTAAATATAA
* * * * * *
49160477 TTTAATAAAATATATGAATTTACTAAAA
1 TTTAACATAAT-TAT-TATTAAATATAA
* * * * *
49160505 TCATAATATATAATATTATAAAATATAT
1 T-TTAACATA-ATTATTATTAAATATAA
*
49160533 TTTAAAATAATTATTATTAAATATAA
1 TTTAACATAATTATTATTAAATATAA
49160559 TTTAACA
1 TTTAACA
49160566 AAAATATATA
Statistics
Matches: 64, Mismatches: 21, Indels: 8
0.69 0.23 0.09
Matches are distributed among these distances:
26 29 0.45
27 9 0.14
28 16 0.25
29 9 0.14
30 1 0.02
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (26 bp):
TTTAACATAATTATTATTAAATATAA
Found at i:49160498 original size:18 final size:17
Alignment explanation
Indices: 49160471--49160587 Score: 54
Period size: 18 Copynumber: 7.0 Consensus size: 17
49160461 TTATTATTAA
49160471 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
49160488 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* *
49160506 CATA-ATATATAATATTATAAA
1 -ATATA-ATTTAATA--A-AAT
49160527 ATAT-ATTT--TAAAAT
1 ATATAATTTAATAAAAT
* *
49160541 A-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
*
49160553 ATATAATTTAACAAAAAT
1 ATATAATTTAA-TAAAAT
49160571 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
49160588 TCTTAGTATT
Statistics
Matches: 74, Mismatches: 11, Indels: 30
0.64 0.10 0.26
Matches are distributed among these distances:
12 1 0.01
13 9 0.12
14 7 0.09
15 2 0.03
17 14 0.19
18 29 0.39
19 6 0.08
20 4 0.05
21 2 0.03
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:49160557 original size:41 final size:41
Alignment explanation
Indices: 49160447--49160574 Score: 122
Period size: 41 Copynumber: 3.1 Consensus size: 41
49160437 TAATTTAATC
*
49160447 ATATTTTAACATAATTATTATTAAATATAATTTAATAAAAT
1 ATATTTTAAAATAATTATTATTAAATATAATTTAATAAAAT
* * *
49160488 ATATGAATTTACTAA-AATCA-TA--ATATATAATATT-ATAAAAT
1 ATAT---TTTA-AAATAATTATTATTAAATATAAT-TTAATAAAAT
*
49160529 ATATTTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
1 ATATTTTAAAATAATTATTATTAAATATAATTTAA-TAAAAT
49160571 ATAT
1 ATAT
49160575 AATTTAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 21
0.70 0.08 0.22
Matches are distributed among these distances:
37 2 0.03
38 8 0.12
39 2 0.03
40 2 0.03
41 32 0.47
42 11 0.16
43 2 0.03
44 8 0.12
45 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (41 bp):
ATATTTTAAAATAATTATTATTAAATATAATTTAATAAAAT
Found at i:49163237 original size:51 final size:50
Alignment explanation
Indices: 49163160--49163264 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
49163150 ATGCTGGTTT
* * *
49163160 TGATACCCTATCTTGATACGTGCAACAAATGGACACTTAAATTTAAACAAA
1 TGATACCCTATCTTGATACATACAACAAATGGACACTT-AATATAAACAAA
*
49163211 TGATACCCTATCTTGATACATACAACACATGGACACTTAATATAAACAAA
1 TGATACCCTATCTTGATACATACAACAAATGGACACTTAATATAAACAAA
49163261 TGAT
1 TGAT
49163265 TTATAGCTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 15 0.30
51 35 0.70
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (50 bp):
TGATACCCTATCTTGATACATACAACAAATGGACACTTAATATAAACAAA
Found at i:49164697 original size:44 final size:45
Alignment explanation
Indices: 49164608--49164698 Score: 114
Period size: 44 Copynumber: 2.0 Consensus size: 45
49164598 TGCTGTATTG
* *
49164608 GAATAGAGGCATAATAGTAAATCAATTATTTTGTTGAATGTAATA
1 GAATAGAGGCATAATAGTAAATCAATTATTTGGTTGAATGGAATA
* * *
49164653 GAATAGAGGCGTAATAGT-ATTC-TTGTATTTGGTTGAATGGAATA
1 GAATAGAGGCATAATAGTAAATCAAT-TATTTGGTTGAATGGAATA
49164697 GA
1 GA
49164699 TGTGTAATAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
43 1 0.03
44 22 0.55
45 17 0.43
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.35
Consensus pattern (45 bp):
GAATAGAGGCATAATAGTAAATCAATTATTTGGTTGAATGGAATA
Found at i:49165809 original size:15 final size:15
Alignment explanation
Indices: 49165781--49165827 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
49165771 ATAAAATATA
49165781 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
49165796 TATTAAATATATTAT
1 AATTAAATATATTAT
49165811 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
49165824 AATT
1 AATT
49165828 TTATAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 7 0.24
14 6 0.21
15 16 0.55
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:49165810 original size:120 final size:120
Alignment explanation
Indices: 49165663--49166076 Score: 638
Period size: 120 Copynumber: 3.5 Consensus size: 120
49165653 TAATCATAGT
* *
49165663 TTAACACAATTATTTTTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
49165728 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
66 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
* *
49165783 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTTATAAAATTCTTAATAATT
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
* * *
49165848 AATATTCTTATATGAATTTACTCAAATCATAATATATGTTACTATAAAAGATAAT
66 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
* * * *
49165903 TTAACATAATAATTATTAAATATGTTTTAATTAAAATA-ATAATTTAATAAAATCCTTAATAATC
1 TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
*
49165967 AATATTCTTATATGAATTTAC-CAAAATCATAATATATGATGCTATAAAATAT-AA
66 AATATTCTTATATGAATTTACTC-AAATCATAATATATGATACTATAAAATATAAA
* * *
49166021 TTGGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TT--AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
49166077 TAAAATAATT
Statistics
Matches: 268, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
118 4 0.01
119 100 0.37
120 164 0.61
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (120 bp):
TTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAA
Found at i:49166127 original size:47 final size:46
Alignment explanation
Indices: 49166058--49166312 Score: 176
Period size: 47 Copynumber: 5.6 Consensus size: 46
49166048 TTAATTAAAA
*
49166058 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * **
49166105 TATATGAATTTGTATAATTTAAAATAATTATTATTAATTATAA-TTTAA
1 TATATGAATTTATATAATTTAAAATAATTA-TAATAA-TA-AATTTTCT
* * *
49166153 TA-AT-AA--TATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAATTTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
* *
49166196 TATATGAATTTATATAATTTAAAATAA-T-TAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * * *
49166241 TA-AT-AATGATATATAATTTCATAA-AATTCTTGATAATAAATTTTAT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
49166287 TATATGAATTTATATAATTTAAAATA
1 TATATGAATTTATATAATTTAAAATA
49166313 TTAATATTAA
Statistics
Matches: 162, Mismatches: 23, Indels: 46
0.70 0.10 0.20
Matches are distributed among these distances:
42 2 0.01
43 10 0.06
44 42 0.26
45 14 0.09
46 14 0.09
47 62 0.38
48 16 0.10
49 2 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:49166166 original size:18 final size:17
Alignment explanation
Indices: 49166139--49166177 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
49166129 TAATTATTAT
49166139 TAATTATAATTTAATAA
1 TAATTATAATTTAATAA
*
49166156 TAATATATAATTTCATAA
1 TAAT-TATAATTTAATAA
49166174 -AATT
1 TAATT
49166178 CTTGATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 7 0.35
18 12 0.60
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATAATTTAATAA
Found at i:49166187 original size:91 final size:91
Alignment explanation
Indices: 49166092--49166337 Score: 440
Period size: 91 Copynumber: 2.7 Consensus size: 91
49166082 TAATTATAAC
* * *
49166092 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAATTATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
49166157 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
49166183 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
49166248 GATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
*
49166274 TAATAAATTTTATTATATGAATTTATATAATTTAAAAT-ATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
49166338 GAACGATCAA
Statistics
Matches: 150, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
90 26 0.17
91 124 0.83
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTGA
Found at i:49166517 original size:20 final size:22
Alignment explanation
Indices: 49166481--49166521 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
49166471 ATGGCTATGC
49166481 TTAAATAATATTTTTTAATTAT
1 TTAAATAATATTTTTTAATTAT
49166503 TTAAA-AATA-TTTTTAATTA
1 TTAAATAATATTTTTTAATTA
49166522 AGAGAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 4 0.21
22 5 0.26
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAAATAATATTTTTTAATTAT
Found at i:49166618 original size:20 final size:22
Alignment explanation
Indices: 49166577--49166622 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
49166567 TATATGTAAT
49166577 ATTATTAAAATAATATTTTTTA
1 ATTATTAAAATAATATTTTTTA
*
49166599 ATTATTTAAA-AATA-TTTTTA
1 ATTATTAAAATAATATTTTTTA
49166619 ATTA
1 ATTA
49166623 ATGCGGTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.43
21 4 0.17
22 9 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATTAAAATAATATTTTTTA
Found at i:49173198 original size:13 final size:13
Alignment explanation
Indices: 49173180--49173211 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
49173170 ATCGACTAAG
49173180 CAATTCCAAGCTT
1 CAATTCCAAGCTT
49173193 CAATTCCAAGCTT
1 CAATTCCAAGCTT
49173206 CAATTC
1 CAATTC
49173212 TGATTATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31
Consensus pattern (13 bp):
CAATTCCAAGCTT
Found at i:49178758 original size:19 final size:19
Alignment explanation
Indices: 49178734--49178789 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
49178724 TAAATTACTC
*
49178734 ATCTTAGTTAATTGAGTTT
1 ATCTTAGTTAATTAAGTTT
*
49178753 ATCTTAGTTAATTAAGTTG
1 ATCTTAGTTAATTAAGTTT
* **
49178772 CTGGTAGTTAATTAAGTT
1 ATCTTAGTTAATTAAGTT
49178790 GCTGGAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.48
Consensus pattern (19 bp):
ATCTTAGTTAATTAAGTTT
Found at i:49178790 original size:19 final size:19
Alignment explanation
Indices: 49178757--49178794 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
49178747 GAGTTTATCT
49178757 TAGTTAATTAAGTTGCTGG
1 TAGTTAATTAAGTTGCTGG
49178776 TAGTTAATTAAGTTGCTGG
1 TAGTTAATTAAGTTGCTGG
49178795 AATAAATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (19 bp):
TAGTTAATTAAGTTGCTGG
Found at i:49178832 original size:19 final size:19
Alignment explanation
Indices: 49178805--49178843 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
49178795 AATAAATTAC
49178805 TCATATTAGTTAATTAAGT
1 TCATATTAGTTAATTAAGT
* *
49178824 TCATCTTAGTTAATTTAGT
1 TCATATTAGTTAATTAAGT
49178843 T
1 T
49178844 GCTGGAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (19 bp):
TCATATTAGTTAATTAAGT
Found at i:49178969 original size:9 final size:10
Alignment explanation
Indices: 49178946--49178982 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
49178936 TAAGTCTAAT
49178946 ATGTGTTTAA
1 ATGTGTTTAA
49178956 ATGTGTTT-A
1 ATGTGTTTAA
49178965 ATGTGTTTAA
1 ATGTGTTTAA
49178975 ATGTGTTT
1 ATGTGTTT
49178983 GTTAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (10 bp):
ATGTGTTTAA
Found at i:49178970 original size:19 final size:19
Alignment explanation
Indices: 49178946--49178982 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
49178936 TAAGTCTAAT
49178946 ATGTGTTTAAATGTGTTTA
1 ATGTGTTTAAATGTGTTTA
49178965 ATGTGTTTAAATGTGTTT
1 ATGTGTTTAAATGTGTTT
49178983 GTTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (19 bp):
ATGTGTTTAAATGTGTTTA
Found at i:49179034 original size:64 final size:64
Alignment explanation
Indices: 49178960--49179079 Score: 197
Period size: 64 Copynumber: 1.9 Consensus size: 64
49178950 GTTTAAATGT
*
49178960 GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTT-ACATGTGACTATTTAGTTGCTTATTAA
1 GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGA-AGGTGACTATTTAGTTGCTTATTAA
* *
49179024 GTTTAGTGTGTTTAAATGTGTTTGTTAATAAATGTTTGAAGGTGACTATTTAGTTG
1 GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGAAGGTGACTATTTAGTTG
49179080 GAATCAGTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
64 51 0.98
65 1 0.02
ACGTcount: A:0.27, C:0.04, G:0.21, T:0.48
Consensus pattern (64 bp):
GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGAAGGTGACTATTTAGTTGCTTATTAA
Found at i:49181796 original size:102 final size:103
Alignment explanation
Indices: 49181664--49181875 Score: 383
Period size: 102 Copynumber: 2.1 Consensus size: 103
49181654 TTTTATAACA
49181664 AAAATAACTTTTTATTTTTAAACTAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
1 AAAATAACTTTTTATTTTTAAACTAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
49181729 AAATCAATTTATTAAAAA-AATAAAGTTATTATTATTT
66 AAATCAATTTATTAAAAATAATAAAGTTATTATTATTT
*
49181766 AAAATAACTTTTTATTTTTTAAA-TAATAGGATACAAATACTAAATCGATCTACAAATAATTCTA
1 AAAATAACTTTTTA-TTTTTAAACTAATAGGATACAAATACTAAATCAATCTACAAATAATTCTA
*
49181830 TAAATCAATTTATTAAAAATAATAGAGTTATTATTATTT
65 TAAATCAATTTATTAAAAATAATAAAGTTATTATTATTT
49181869 AAAATAA
1 AAAATAA
49181876 TAATTATTTA
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
102 73 0.69
103 33 0.31
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (103 bp):
AAAATAACTTTTTATTTTTAAACTAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
AAATCAATTTATTAAAAATAATAAAGTTATTATTATTT
Found at i:49190987 original size:19 final size:18
Alignment explanation
Indices: 49190935--49190987 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
49190925 AAATAGATAT
49190935 AATTATTTTGGTTAAAGTTA
1 AATTATTTTGG--AAAGTTA
*
49190955 AAATATTTAT-GAAAGTTA
1 AATTATTT-TGGAAAGTTA
49190973 ATATTATTTTGGAAA
1 A-ATTATTTTGGAAA
49190988 AAAATATAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 9 0.32
19 10 0.36
20 8 0.29
21 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
AATTATTTTGGAAAGTTA
Found at i:49193112 original size:17 final size:17
Alignment explanation
Indices: 49193073--49193114 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
49193063 AATTAGAATG
*
49193073 TAAAAATTAAAATAAAA
1 TAAAAAATAAAATAAAA
*
49193090 -ACAAAAATATAATAAAA
1 TA-AAAAATAAAATAAAA
49193107 TAAAAAAT
1 TAAAAAAT
49193115 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAAAATAAAATAAAA
Found at i:49196704 original size:30 final size:30
Alignment explanation
Indices: 49196668--49196736 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
49196658 TCCACTTGAC
* *
49196668 TTAGATAGCCAC-AGAGGTGTCCATACATCA
1 TTAGATAGCCACAAG-GGTGTCCACAAATCA
49196698 TTAGATAGCCACAAGGGTGTCCACAAATCA
1 TTAGATAGCCACAAGGGTGTCCACAAATCA
49196728 TTAGATAGC
1 TTAGATAGC
49196737 AATAAAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 34 0.94
31 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (30 bp):
TTAGATAGCCACAAGGGTGTCCACAAATCA
Found at i:49197191 original size:54 final size:52
Alignment explanation
Indices: 49197110--49197323 Score: 209
Period size: 53 Copynumber: 4.1 Consensus size: 52
49197100 GCCATTTTTA
* * * * * *
49197110 TCTTCTTTCCTCACATGATAGCATAGTCCCAGATTAGGTCTTACACTATGTGG
1 TCTTCTATCTTCATATGAT-GCATAGTCCTAGACTAGGTCTTACACTATATGG
** * * * *
49197163 TCTTCGTATCCCCATATGATGCCATAGTCTTAGATTAGGTCTTACATTATATGA
1 TCTTC-TATCTTCATATGATG-CATAGTCCTAGACTAGGTCTTACACTATATGG
** *
49197217 TC-T-TATCTTCATATGATGTTTAGTCTTAGACTAGGTCTTACACTATATGG
1 TCTTCTATCTTCATATGATGCATAGTCCTAGACTAGGTCTTACACTATATGG
* *
49197267 TCTTCTTATCTTCATATGATGTC-TAATCCTAGACTAGGTCTTACACTATATGA
1 TCTTC-TATCTTCATATGATG-CATAGTCCTAGACTAGGTCTTACACTATATGG
49197320 TCTT
1 TCTT
49197324 TTTGCTATGG
Statistics
Matches: 136, Mismatches: 19, Indels: 12
0.81 0.11 0.07
Matches are distributed among these distances:
50 29 0.21
51 14 0.10
53 53 0.39
54 40 0.29
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (52 bp):
TCTTCTATCTTCATATGATGCATAGTCCTAGACTAGGTCTTACACTATATGG
Found at i:49197300 original size:53 final size:53
Alignment explanation
Indices: 49197144--49197323 Score: 222
Period size: 53 Copynumber: 3.4 Consensus size: 53
49197134 AGTCCCAGAT
* * ** * *
49197144 TAGGTCTTACACTATGTGGTCTTCGTATCCCCATATGATGCCATAGTCTTAGAT
1 TAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTC-TAGTCTTAGAC
* * *
49197198 TAGGTCTTACATTATAT-G--ATCTTATCTTCATATGATGTTTAGTCTTAGAC
1 TAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTCTAGTCTTAGAC
* *
49197248 TAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTCTAATCCTAGAC
1 TAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTCTAGTCTTAGAC
*
49197301 TAGGTCTTACACTATATGATCTT
1 TAGGTCTTACACTATATGGTCTT
49197324 TTTGCTATGG
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
50 26 0.24
51 16 0.15
53 51 0.47
54 15 0.14
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (53 bp):
TAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTCTAGTCTTAGAC
Found at i:49197939 original size:27 final size:26
Alignment explanation
Indices: 49197909--49197974 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
49197899 TTATACAGTA
49197909 ACAGTACAGTATAGCCCTTGGCCCAAT
1 ACAGTACAGTAT-GCCCTTGGCCCAAT
* * *
49197936 ACAGTAACAGTGTGGCCTTGGCCCAGT
1 ACAGT-ACAGTATGCCCTTGGCCCAAT
*
49197963 TCAGTATCAGTA
1 ACAGTA-CAGTA
49197975 CAGTGCAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 25 0.78
28 6 0.19
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (26 bp):
ACAGTACAGTATGCCCTTGGCCCAAT
Found at i:49198377 original size:27 final size:27
Alignment explanation
Indices: 49198337--49198614 Score: 294
Period size: 27 Copynumber: 10.3 Consensus size: 27
49198327 ACCCTACGAG
49198337 GTCATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTACCCTTCGGGGGTATTTCA
* **
49198364 GCCATTTTACCCTTTAGGGGTATTTC-
1 GTCATTTTACCCTTCGGGGGTATTTCA
* *
49198390 GATCATTTTACCCTTTGGGGGTATTT-T
1 G-TCATTTTACCCTTCGGGGGTATTTCA
*
49198417 GATCATTTTACCCTAT-GGGGGTATTTTA
1 G-TCATTTTACCCT-TCGGGGGTATTTCA
* * * *
49198445 GTCATTTTACCCTACAGAGTTATTTCA
1 GTCATTTTACCCTTCGGGGGTATTTCA
*
49198472 GTCATTTTACCCTTCGGGGGTATTT-T
1 GTCATTTTACCCTTCGGGGGTATTTCA
* * *
49198498 GATTATTTTACCTTTCGAGGGTATTTCA
1 G-TCATTTTACCCTTCGGGGGTATTTCA
**
49198526 GTCATTTTACCCTTCAAGGGTATTTCA
1 GTCATTTTACCCTTCGGGGGTATTTCA
* *
49198553 GTCATTTTACCCCTCGAGGGTATTTCA
1 GTCATTTTACCCTTCGGGGGTATTTCA
* ** *
49198580 GTCATTTTATCCTTCAAGGGTATTTTA
1 GTCATTTTACCCTTCGGGGGTATTTCA
49198607 GTCATTTT
1 GTCATTTT
49198615 CCCACAAATC
Statistics
Matches: 215, Mismatches: 29, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 210 0.98
28 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTTCGGGGGTATTTCA
Found at i:49198477 original size:81 final size:81
Alignment explanation
Indices: 49198338--49198614 Score: 337
Period size: 81 Copynumber: 3.4 Consensus size: 81
49198328 CCCTACGAGG
* * * *
49198338 TCATTTTACCCTTCGGGGGTATTTCAGCCATTTTACCCTTTAGGGGTATTTC-GATCATTTTACC
1 TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCAGAGGTATTTCAG-TCATTTTACC
*
49198402 CTTTGGGGGTATTTTGA
65 CTTCGGGGGTATTTTGA
* * * *
49198419 TCATTTTACCCTAT-GGGGGTATTTTAGTCATTTTACCCTACAGAGTTATTTCAGTCATTTTACC
1 TCATTTTACCCT-TCGAGGGTATTTCAGTCATTTTACCCTTCAGAGGTATTTCAGTCATTTTACC
49198483 CTTCGGGGGTATTTTGA
65 CTTCGGGGGTATTTTGA
* *
49198500 TTATTTTACCTTTCGAGGGTATTTCAGTCATTTTACCCTTCA-AGGGTATTTCAGTCATTTTACC
1 TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCAGA-GGTATTTCAGTCATTTTACC
* * *
49198564 CCTCGAGGGTA-TTTCA
65 CTTCGGGGGTATTTTGA
* * *
49198580 GTCATTTTATCCTTCAAGGGTATTTTAGTCATTTT
1 -TCATTTTACCCTTCGAGGGTATTTCAGTCATTTT
49198615 CCCACAAATC
Statistics
Matches: 170, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
80 6 0.04
81 162 0.95
82 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.44
Consensus pattern (81 bp):
TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCAGAGGTATTTCAGTCATTTTACCC
TTCGGGGGTATTTTGA
Found at i:49200041 original size:48 final size:48
Alignment explanation
Indices: 49199968--49200061 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
49199958 TTTCTTGGCT
* *
49199968 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAAAGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
49200016 TAAAAACGCCTAAGTCAG-CTCAACTTGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTCCAACAATAAAGGATTCAAC
49200062 AGAAATTCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:49202561 original size:48 final size:48
Alignment explanation
Indices: 49202477--49202570 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
49202467 TTTCTTGGCT
* *
49202477 TAAAAACGCCTAAGTCAGCCTAACTTCCACCGATAAAGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
49202525 TAAAAATGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
49202571 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.40, C:0.27, G:0.14, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:49204736 original size:54 final size:54
Alignment explanation
Indices: 49204668--49204865 Score: 168
Period size: 54 Copynumber: 3.6 Consensus size: 54
49204658 TACAAAGTGT
* * * *
49204668 GAGCAGACTTGCGGACAACAATGGTGCGAGCTATCACGCAAACAGACCAAAAGC
1 GAGCAGACTCGCGGACAACAATGGTGCGAGCTATCATGCGAACAGACCAAATGC
* ** * * **
49204722 GAGCAGACTCGCGGACAGCAATGGCACGAGTTGTCATGCGAACAG-CCACGGTGC
1 GAGCAGACTCGCGGACAACAATGGTGCGAGCTATCATGCGAACAGACCA-AATGC
* * **
49204776 TG-GCAGACTCGCGGACAACAATGGTGC-AGGCTGTCATGCGGACAGACCATTTGC
1 -GAGCAGACTCGCGGACAACAATGGTGCGA-GCTATCATGCGAACAGACCAAATGC
* * * *
49204830 GAGCAAACTCTCGGACGAAAAAAGGTGCGAGCTATC
1 GAGCAGACTCGCGGAC-AACAATGGTGCGAGCTATC
49204866 TTGGGAACTG
Statistics
Matches: 114, Mismatches: 23, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
53 5 0.04
54 90 0.79
55 18 0.16
56 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.14
Consensus pattern (54 bp):
GAGCAGACTCGCGGACAACAATGGTGCGAGCTATCATGCGAACAGACCAAATGC
Found at i:49208135 original size:10 final size:9
Alignment explanation
Indices: 49208110--49208134 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
49208100 ATTTTTAAAG
49208110 AATTTTTGT
1 AATTTTTGT
49208119 AATTTTTGT
1 AATTTTTGT
49208128 AATTTTT
1 AATTTTT
49208135 TAAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
AATTTTTGT
Found at i:49218241 original size:50 final size:50
Alignment explanation
Indices: 49218176--49218411 Score: 256
Period size: 50 Copynumber: 4.6 Consensus size: 50
49218166 TCTTGTACTA
* * ** * *
49218176 CCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG
* * ** *
49218226 CCCATGCCCTGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG
49218276 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG
* * * * * **
49218326 CCAACGTCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATTTCAATAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCTC---GGTG
49218382 CCAATGCCATGTCCCAGACATGGTCTTACA
1 CCAATGCCATGTCCCAGACATGGTCTTACA
49218412 CTGGCTCACA
Statistics
Matches: 154, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
50 121 0.79
53 4 0.03
56 29 0.19
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG
Found at i:49231334 original size:17 final size:17
Alignment explanation
Indices: 49231293--49231335 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
49231283 GTAAAATTCT
*
49231293 AACTAAGAAATAAAAAAA
1 AACTAA-AAAGAAAAAAA
*
49231311 AACCTAAAAAGAAATAAA
1 AA-CTAAAAAGAAAAAAA
49231329 AACTAAA
1 AACTAAA
49231336 TACAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 13 0.59
19 4 0.18
ACGTcount: A:0.74, C:0.09, G:0.05, T:0.12
Consensus pattern (17 bp):
AACTAAAAAGAAAAAAA
Found at i:49232031 original size:22 final size:22
Alignment explanation
Indices: 49232006--49232049 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
49231996 CAATCATGGA
*
49232006 TCTCCTTAAGAATAATCTTCCT
1 TCTCCTAAAGAATAATCTTCCT
49232028 TCTCCTAAAGAATAATCTTCCT
1 TCTCCTAAAGAATAATCTTCCT
49232050 AACACTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.39
Consensus pattern (22 bp):
TCTCCTAAAGAATAATCTTCCT
Found at i:49235410 original size:41 final size:41
Alignment explanation
Indices: 49235349--49235452 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
49235339 ACTGGCCTTT
* * * *
49235349 AGCCTGCTAGACCTATAGTCTGAAATGTATCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATATATCACCGGCATCA
* * *
49235390 AGCCTGCTAGACGTAAAGTCTGAATTATTTCATCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATATCACCGGCATCA
* *
49235431 AGCCTACTAGATGTAAAGTCTG
1 AGCCTGCTAGACGTAAAGTCTG
49235453 CATTACATTC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAATATATCACCGGCATCA
Found at i:49235716 original size:12 final size:12
Alignment explanation
Indices: 49235701--49235754 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
49235691 ACTCAAAACT
49235701 TATATATATACA
1 TATATATATACA
**
49235713 TATATATATTTGA
1 TATATATA-TACA
*
49235726 GTATTATACATACA
1 -TA-TATATATACA
49235740 TATATATATACA
1 TATATATATACA
49235752 TAT
1 TAT
49235755 CTTTGACTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
12 20 0.61
13 4 0.12
14 4 0.12
15 5 0.15
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (12 bp):
TATATATATACA
Found at i:49240833 original size:18 final size:16
Alignment explanation
Indices: 49240810--49240852 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
49240800 TTTTTATGAT
49240810 AATAAAATATTATAAGGA
1 AATAAAATATT-TAA-GA
49240828 AATAAAAT-TTTAAGA
1 AATAAAATATTTAAGA
*
49240843 GATAAAATAT
1 AATAAAATAT
49240853 AGAATAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 9 0.39
16 4 0.17
17 2 0.09
18 8 0.35
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (16 bp):
AATAAAATATTTAAGA
Found at i:49241120 original size:14 final size:15
Alignment explanation
Indices: 49241093--49241121 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49241083 TTGATGACTT
49241093 CCTAAGGTTTTCAAG
1 CCTAAGGTTTTCAAG
49241108 CCTAAGG-TTTCAAG
1 CCTAAGGTTTTCAAG
49241122 ATCTTCCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (15 bp):
CCTAAGGTTTTCAAG
Found at i:49243219 original size:238 final size:238
Alignment explanation
Indices: 49242920--49243399 Score: 766
Period size: 238 Copynumber: 2.0 Consensus size: 238
49242910 TAAGGTTAAA
49242920 TTAGTAAATTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAAATTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
* * * * *
49242985 AAACACCATCGAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTTGGCCATCCTTATTTT
66 AAACACCACCGAAAATTGAACGAAAAGAAACCA-AAAAGCTTCAACATTCGACCATCCTTATTTT
* *
49243050 GCTTGCATGTGAGTATTTTTCATCCTATTTTTAATGATTTCTATG-TTTTAGGATCGTTGTAGCT
130 GCTTGCATGTGAGTATTTTTCATCCTAGTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
49243114 TAATCTAGCAAGCTCGGGGACTAATTTGCAAACCTGTTAATAA-G
195 TAATCTAGCAAGCTCGGGGACTAATTTGCAAACCTGTTAA-AAGG
* * *
49243158 TTAGTAAATTAGTTAATAAGTGAATTAAAATAAAATAAATAATGTATCATCTTTTTTAATTTGTT
1 TTAGTAAATTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
* * *
49243223 AAACACCACCGAAAGTTGAAGGAAAAGAAACTAAAAAGCTTCAACATTCGACCATCCTTATTTTG
66 AAACACCACCGAAAATTGAACGAAAAGAAACCAAAAAGCTTCAACATTCGACCATCCTTATTTTG
** *
49243288 CTTGCATGTGAGTATTTTTTGTCCTGGTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCTT
131 CTTGCATGTGAGTATTTTTCATCCTAGTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCTT
* *
49243353 AATCTAGCTAGCTTGGGGACTAATTTGCAAACCTGTTAAAAGG
196 AATCTAGCAAGCTCGGGGACTAATTTGCAAACCTGTTAAAAGG
49243396 TTAG
1 TTAG
49243400 GGTTTTGCCA
Statistics
Matches: 222, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
237 70 0.32
238 152 0.68
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (238 bp):
TTAGTAAATTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
AAACACCACCGAAAATTGAACGAAAAGAAACCAAAAAGCTTCAACATTCGACCATCCTTATTTTG
CTTGCATGTGAGTATTTTTCATCCTAGTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCTT
AATCTAGCAAGCTCGGGGACTAATTTGCAAACCTGTTAAAAGG
Found at i:49243700 original size:21 final size:20
Alignment explanation
Indices: 49243671--49243723 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
49243661 ATTTTGATAA
49243671 AATATGAATTTTGATTGAATTG
1 AATA-GAATTTT-ATTGAATTG
*
49243693 AATAGAATAATTATTGAATTG
1 AATAGAAT-TTTATTGAATTG
*
49243714 AATTGAATTT
1 AATAGAATTT
49243724 GTTCATTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 20 0.74
22 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (20 bp):
AATAGAATTTTATTGAATTG
Found at i:49248055 original size:19 final size:19
Alignment explanation
Indices: 49248031--49248070 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
49248021 CGTCACTGGC
*
49248031 AAATTCACGTGGTGTACCA
1 AAATTCACATGGTGTACCA
49248050 AAATTCACATGGTGTACCA
1 AAATTCACATGGTGTACCA
49248069 AA
1 AA
49248071 CCTAGCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (19 bp):
AAATTCACATGGTGTACCA
Found at i:49252327 original size:25 final size:25
Alignment explanation
Indices: 49252242--49252438 Score: 109
Period size: 25 Copynumber: 7.8 Consensus size: 25
49252232 ATATTTCTTA
* *
49252242 ATATTATAGTATATATATTCTTTTAAT
1 ATATTAT-GTATATATATT-TTATACT
* ** **
49252269 ATATTAGGTATAT-T-TTAAATTTT
1 ATATTATGTATATATATTTTATACT
*
49252292 ATATTACGTATATATATTTTATACT
1 ATATTATGTATATATATTTTATACT
* * * *
49252317 ATTTTATGTATATATCTTTAATATT
1 ATATTATGTATATATATTTTATACT
* *
49252342 ATATTATTTATATATATATTTTTAC-
1 ATATTATGTATATATAT-TTTATACT
* * *
49252367 ATGTTATCTTATGTATATATCTTA-ACT
1 ATATTAT-GTA--TATATATTTTATACT
* *
49252394 ATATTATGTATGTAT-TTTTAACACT
1 ATATTATGTATATATATTTT-ATACT
*
49252419 ATATTATGTACATAT-TTTTA
1 ATATTATGTATATATATTTTA
49252439 ATATTATCAC
Statistics
Matches: 130, Mismatches: 31, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
23 17 0.13
24 9 0.07
25 66 0.51
26 17 0.13
27 14 0.11
28 7 0.05
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
ATATTATGTATATATATTTTATACT
Found at i:49252386 original size:30 final size:29
Alignment explanation
Indices: 49252325--49252386 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
49252315 CTATTTTATG
*
49252325 TATATATCTTTAATATTATATTATTTATA
1 TATATATCTTTAATATTATATTATGTATA
* * *
49252354 TATATATTTTTACATGTTATCTTATGTATA
1 TATATATCTTTA-ATATTATATTATGTATA
49252384 TAT
1 TAT
49252387 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TATATATCTTTAATATTATATTATGTATA
Found at i:49252616 original size:16 final size:15
Alignment explanation
Indices: 49252592--49252639 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
49252582 TAATTATCAT
*
49252592 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
49252608 TATTTTAATATTTTA
1 TATTTTAATATTTTA
49252623 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
49252639 T
1 T
49252640 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:49252627 original size:7 final size:8
Alignment explanation
Indices: 49252592--49252643 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
49252582 TAATTATCAT
*
49252592 TATTCTAA
1 TATTTTAA
*
49252600 TATTTTGA
1 TATTTTAA
49252608 TATTTTAA
1 TATTTTAA
49252616 TATTTT-A
1 TATTTTAA
49252623 TATTTTATA
1 TATTTTA-A
*
49252632 TATTTTAT
1 TATTTTAA
49252640 TATT
1 TATT
49252644 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:49254223 original size:12 final size:12
Alignment explanation
Indices: 49254206--49254241 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
49254196 AACATTTTGA
49254206 CATTCATGCATT
1 CATTCATGCATT
49254218 CATTCATGCATT
1 CATTCATGCATT
*
49254230 CATTCATACATT
1 CATTCATGCATT
49254242 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:49262644 original size:69 final size:70
Alignment explanation
Indices: 49262524--49262697 Score: 203
Period size: 69 Copynumber: 2.5 Consensus size: 70
49262514 CTTTCCAAGG
* **
49262524 AAAATCAACACATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
49262587 T-TTTT
65 TGTTTT
** * *
49262592 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
49262657 TGTTTT
65 TGTTTT
** * *
49262663 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
49262698 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
69 84 0.92
70 3 0.03
71 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:49262841 original size:76 final size:75
Alignment explanation
Indices: 49262715--49263056 Score: 440
Period size: 72 Copynumber: 4.5 Consensus size: 75
49262705 TTTGTTTTTC
* *
49262715 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
49262780 GTTGTTAAAAA
66 GTT-TTAAAAA
*
49262791 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
49262856 GTTTT---CA
66 GTTTTAAAAA
* * * * * *
49262863 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
49262928 ATTTTCAAAAAAA
66 GTTTT---AAAAA
* * *
49262941 AAAATCAACTTATATTGCGAGAGATGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
49263005 TCTGTTTTTAAAA
63 TCTGTTTTAAAAA
* *
49263018 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAG
49263057 ATTACACACT
Statistics
Matches: 235, Mismatches: 21, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
72 65 0.28
75 2 0.01
76 65 0.28
77 39 0.17
78 37 0.16
80 27 0.11
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:49263183 original size:132 final size:131
Alignment explanation
Indices: 49262945--49263188 Score: 364
Period size: 132 Copynumber: 1.8 Consensus size: 131
49262935 AAAAAAAAAA
* * *
49262945 TCAACTTATATTGCGAGAGATGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG-T-ACACGCTGAGGTAATTTCAATTTCTGT
* ** *
49263010 TTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATT
64 TTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGATTACACACTGTGGTATT
49263075 TTT
129 TTT
* *
49263078 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GGTACACGCTGAGGTAATTTCAATTTCTGTT
49263142 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 -TTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
49263189 GACACGCTGA
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
131 26 0.26
132 42 0.42
133 30 0.30
134 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (131 bp):
TCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGTACACGCTGAGGTAATTTCAATTTCTGTTT
TAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGATTACACACTGTGGTATTTT
T
Found at i:49263448 original size:14 final size:14
Alignment explanation
Indices: 49263429--49263456 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
49263419 CTGAGGTCTT
49263429 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
49263443 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
49263457 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:49263674 original size:78 final size:76
Alignment explanation
Indices: 49263443--49263728 Score: 352
Period size: 72 Copynumber: 3.8 Consensus size: 76
49263433 ATTTCTGTTC
*
49263443 TTCAATTTCTGTTCGT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTCAATTTCTGTT-TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
49263507 CGCTGAGGTAAT
65 CGCTGAGGTATT
* * ** * *
49263519 TTCAATTTCTGTTTTC----AAAATTCAACTTATATTGCGAGAAATGAGTTAAGCCTCAAGACAC
1 TTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
49263580 GTTGAGGTATT
66 GCTGAGGTATT
*
49263591 TTCAATTTCTGTTTTCAAAAAAAACAT-AACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTC
1 TTCAATTTCTGTTTTCAAAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
*
49263654 ACATGCTGAGGTATT
62 ACACGCTGAGGTATT
** *
49263669 TTCAATTTCTGTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49263729 ATTACACACT
Statistics
Matches: 179, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
72 64 0.36
75 2 0.01
76 45 0.25
77 3 0.02
78 64 0.36
79 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (76 bp):
TTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATT
Found at i:49263745 original size:78 final size:77
Alignment explanation
Indices: 49263443--49263748 Score: 333
Period size: 78 Copynumber: 4.0 Consensus size: 77
49263433 ATTTCTGTTC
**
49263443 TTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACA
1 TTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACA
* *
49263507 CGCTGAGGTAAT
66 CACTGAGGTATT
* * * ** *
49263519 TTCAATTTCTG-TTTT---CAAAATTCAACTTATATTGCGAGAAATGAGTTAAGCCTCA-AGACA
1 TTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACA
**
49263579 CGTTGAGGTATT
66 CACTGAGGTATT
* * *
49263591 TTCAATTTCTGTTTTCAAAAAAAACAT-AACTTATATTGCGAGAGGTGAGTTGAGCCTC-G-GTT
1 TTCAATTTCTGTTTTTAAAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAG-A
49263653 CACATGCTGAGGTATT
64 CACA--CTGAGGTATT
* * *
49263669 TTCAATTTCTGTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTAC
1 TTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-GAC
*
49263734 ACACTGTGGTATT
65 ACACTGAGGTATT
49263747 TT
1 TT
49263749 TTCAATTCAT
Statistics
Matches: 190, Mismatches: 26, Indels: 26
0.79 0.11 0.11
Matches are distributed among these distances:
72 59 0.31
73 3 0.02
75 3 0.02
76 46 0.24
77 3 0.02
78 71 0.37
79 1 0.01
80 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (77 bp):
TTCAATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACA
CACTGAGGTATT
Found at i:49264035 original size:14 final size:14
Alignment explanation
Indices: 49264016--49264050 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
49264006 CGCCGAGGTA
49264016 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
49264030 TTTTCAATTTTTGT
1 TTTTCAATTTCTGT
*
49264044 CTTTCAA
1 TTTTCAA
49264051 AAAAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:49264086 original size:93 final size:90
Alignment explanation
Indices: 49263873--49264121 Score: 310
Period size: 91 Copynumber: 2.8 Consensus size: 90
49263863 CTACTTTTTC
* * *
49263873 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGGTATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
**
49263937 TG-TTTTCATTATTATGTTTTTGAA
66 TGTTTTTCATTATTATGTTTTAAAA
* * * *
49263961 AGAATCAACTCGTATTGAGAGAGGCGAGTTGAGCCTCAAGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT-ACACGCCGAGGTATTTTCAATTT
49264026 CTGTTTTTCAATT-TT-TGTCTTTCAAAAA
65 CTGTTTTTC-ATTATTATGT-TTT--AAAA
* * *
49264054 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
49264118 TGTT
66 TGTT
49264122 GTCAAAAAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
88 35 0.25
90 27 0.20
91 36 0.26
92 5 0.04
93 35 0.25
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (90 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
TGTTTTTCATTATTATGTTTTAAAA
Found at i:49264155 original size:74 final size:75
Alignment explanation
Indices: 49264051--49264237 Score: 344
Period size: 74 Copynumber: 2.5 Consensus size: 75
49264041 TGTCTTTCAA
*
49264051 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
49264116 TCTG-TTGTC
66 TCTGTTTGTC
49264125 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
49264190 TCTGTTTGTC
66 TCTGTTTGTC
49264200 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
49264238 GGCTCACATG
Statistics
Matches: 111, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
73 38 0.34
74 68 0.61
75 5 0.05
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTGTTTGTC
Found at i:49264298 original size:165 final size:161
Alignment explanation
Indices: 49264108--49264439 Score: 495
Period size: 165 Copynumber: 2.0 Consensus size: 161
49264098 GCTGAGGTAA
* *
49264108 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTGTAAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA-G
*
49264173 CTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65 CTGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* **
49264237 CGGCTCACATGCTGAGGTCTTTTCAATTTCTATT
130 CGG--CACACGCTGAGGTAATTTCAATTTCTATT
* *
49264271 TTTCAATTTCTGTTCGTAAAAAAAAATCAACCCATTTTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTGTT-GT-AAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
49264336 GCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCC
64 GCTGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
49264401 TCGGGACACGCTGAGGTAATTTCAATTTCTATT
129 TCGGCACACGCTGAGGTAATTTCAATTTCTATT
*
49264434 TGTCAA
1 TTTCAA
49264440 AAATTAACTC
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
163 44 0.29
164 11 0.07
165 98 0.64
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (161 bp):
TTTCAATTTCTGTTGTAAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAGC
TGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
GGCACACGCTGAGGTAATTTCAATTTCTATT
Found at i:49264394 original size:73 final size:72
Alignment explanation
Indices: 49264292--49264514 Score: 277
Period size: 73 Copynumber: 3.0 Consensus size: 72
49264282 GTTCGTAAAA
* *
49264292 AAAAATCAACCCATTTTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTT-AATTT
*
49264356 CTGTTTTTC
64 CTATTTTTC
* * *
49264365 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAATTTC
*
49264430 TATTTGTC
65 TATTTTTC
* * * *
49264438 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTTAATT
*
49264503 TCTACTTTTC
63 TCTATTTTTC
49264513 AA
1 AA
49264515 TTTCTGTTTT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
72 2 0.02
73 87 0.67
74 12 0.09
75 28 0.22
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAATTTCT
ATTTTTC
Found at i:49264779 original size:75 final size:74
Alignment explanation
Indices: 49264665--49265007 Score: 404
Period size: 72 Copynumber: 4.5 Consensus size: 74
49264655 TTTGTTTTTC
* *
49264665 AAAATCGACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
49264730 GTTGTTAAAA
66 GTT-TTAAAA
**
49264740 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
49264805 GTTTT--CA
66 GTTTTAAAA
* * ** * * *
49264812 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
49264877 GTTTTCAAAAAAA
66 GTTTT----AAAA
* * * *
49264890 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTAAAGGTATTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCT-GAGGTAATTTCAAT
*
49264954 TTCTATTTTTTAAAA
62 TTC--TGTTTTAAAA
*
49264969 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49265008 ATTACACACT
Statistics
Matches: 234, Mismatches: 21, Indels: 21
0.85 0.08 0.08
Matches are distributed among these distances:
72 66 0.28
74 2 0.01
75 64 0.27
77 1 0.00
78 35 0.15
79 39 0.17
80 6 0.03
81 16 0.07
83 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAA
Found at i:49265537 original size:227 final size:220
Alignment explanation
Indices: 49265030--49265593 Score: 636
Period size: 227 Copynumber: 2.5 Consensus size: 220
49265020 GGTATTTTTT
* * *
49265030 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCTGAGGTATTTTCAATTTCTGT
** * * ** * * * *
49265093 TT-TCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCATCAAGCCACGTTGAGGTATTTTCA
65 TTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCA
* * ** *
49265157 ATTTCTGTTTTCAAAAAAAAATCAACTTATATTGTGAGAGGTGAGTTAAGCCTCGGTTCACACGC
130 ATTTCTATTTTC---AAAAAATCAACTTATATTGCGAGAAATGAGTTAAGCCTCAG-T-ACACGC
*
49265222 TGAGGTAATTTCAATTTCTGTTTTTCAAATA
190 TGAGGTAATTTCAATTTCTGTTTTTCAAAAA
* * *
49265253 TTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTCTTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GTCACATGCTGAGGTATTTTCAATTTCTGT
*
49265318 TCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
65 T--T--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAAT
* * *
49265383 TTCAATTTCTATTTTC-AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGT
126 TTCAATTTCTATTTTCAAAAAATCAACTTATATTGCGAGAAATGAGTTAAGCCTC-AGTACACGC
*
49265446 TGAGGTATTTTCAATTTCTG-TTTTCAAAAAAAAA
190 TGAGGTAATTTCAATTTCTGTTTTTC----AAAAA
*
49265480 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACATGCTGAGGTATTTTCAATTTCTG-
*
49265545 TTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
64 ---TTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAG
49265594 ATTACACACT
Statistics
Matches: 291, Mismatches: 32, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
222 1 0.00
223 36 0.12
224 24 0.08
225 25 0.09
226 33 0.11
227 107 0.37
229 1 0.00
230 62 0.21
231 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (220 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCTGAGGTATTTTCAATTTCTGTT
TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGGTAATTTCAA
TTTCTATTTTCAAAAAATCAACTTATATTGCGAGAAATGAGTTAAGCCTCAGTACACGCTGAGGT
AATTTCAATTTCTGTTTTTCAAAAA
Found at i:49265610 original size:79 final size:77
Alignment explanation
Indices: 49265030--49265613 Score: 570
Period size: 72 Copynumber: 7.7 Consensus size: 77
49265020 GGTATTTTTT
* *
49265030 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTAATTTCAATTTCTG--
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACACGCTGAGGTATTTTCAATTTCTGTT
* *
49265092 TTTT--CAAAAT
66 TTTTAAAAAAAA
* ** * * *
49265102 TCAACTTATATTGCGAGAAATGAGTTGAGCATCA-AGCCACGTTGAGGTATTTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACACGCTGAGGTATTTTCAATTTCTGTT
**
49265166 TTCAAAAAAAAA
66 TTTTAAAAAAAA
* * * * ** *
49265178 TCAACTTATATTGTGAGAGGTGAGTTAAGCCTCGGTTCACACGCTGAGGTAATTTCAATTTCTG-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-AGACACGCTGAGGTATTTTCAATTTCTGT
* *
49265242 TTTTT--CAAATA
65 TTTTTAAAAAAAA
* * * *
49265253 TTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACTCACATGCTGAGGTCTTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA--GACACGCTGAGGTATTTTCAATTTCTG
* **
49265317 TTCGTAAAAAAAAAA
64 TT-TTTTAAAAAAAA
* *
49265332 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTAATTTCAATTTC--TA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACACGCTGAGGTATTTTCAATTTCTGTT
* *
49265394 TTTT--CAAAAT
66 TTTTAAAAAAAA
* ** *
49265404 TCAACTTATATTGCGAGAAATGAGTTGAGCCTCA-AGACACGTTGAGGTATTTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACACGCTGAGGTATTTTCAATTTCTGTT
**
49265468 TTCAAAAAAAAA
66 TTTTAAAAAAAA
* * ** *
49265480 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-AGACACGCTGAGGTATTTTCAATTTCTG-
49265545 TTTTTTAAAAAAAA
64 TTTTTTAAAAAAAA
* * * *
49265559 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-GACACGCTGAGGTATTTT
49265614 TTCAATTCAT
Statistics
Matches: 411, Mismatches: 78, Indels: 39
0.78 0.15 0.07
Matches are distributed among these distances:
72 111 0.27
74 7 0.02
75 58 0.14
76 68 0.17
77 25 0.06
78 47 0.11
79 94 0.23
80 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (77 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAGACACGCTGAGGTATTTTCAATTTCTGTT
TTTTAAAAAAAA
Found at i:49265900 original size:14 final size:14
Alignment explanation
Indices: 49265881--49265915 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
49265871 CGCCGAGGTA
49265881 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
49265895 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
49265909 CTTTCAA
1 TTTTCAA
49265916 AAAAAAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:49265953 original size:93 final size:90
Alignment explanation
Indices: 49265738--49265986 Score: 290
Period size: 91 Copynumber: 2.8 Consensus size: 90
49265728 CTACTTTTTC
* * * *
49265738 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGATATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
* **
49265802 TG-TTTTCATTATTATGTTTTTGAA
66 TGTTTTTCAATATTATGTTTTAAAA
* * * * *
49265826 AGAATCAACTCGTATTGTGAGAGGCGATTTGAGCCTCAAGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT-ACACGCCGAGGTATTTTCAATTT
*
49265891 CTGTTTTTCAAT-TTCTGTCTTTCAAAAA
65 CTGTTTTTCAATATTATGT-TTT--AAAA
* * *
49265919 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
49265983 TGTT
66 TGTT
49265987 GTCAAAAAAA
Statistics
Matches: 134, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
88 34 0.25
90 28 0.21
91 36 0.27
92 2 0.01
93 34 0.25
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (90 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
TGTTTTTCAATATTATGTTTTAAAA
Found at i:49266020 original size:74 final size:74
Alignment explanation
Indices: 49265896--49266102 Score: 328
Period size: 74 Copynumber: 2.8 Consensus size: 74
49265886 AATTTCTGTT
* *
49265896 TTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTGT-TGTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
49265961 ACGCTGAGGTAA
63 ACGCTGAGGTAA
*
49265973 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
49266038 CTGAGGTAA
66 CTGAGGTAA
*
49266047 TTTCAATTTCTGTTTGTC--AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTCAATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
49266103 GGCTCACATG
Statistics
Matches: 124, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
73 36 0.29
74 67 0.54
75 5 0.04
76 3 0.02
77 13 0.10
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (74 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTAA
Found at i:49266181 original size:164 final size:163
Alignment explanation
Indices: 49265973--49266268 Score: 477
Period size: 164 Copynumber: 1.8 Consensus size: 163
49265963 GCTGAGGTAA
* **
49265973 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTGTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACA-G
* * *
49266038 CTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
65 CTGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCT
49266102 CGGCTCACATGCTGAGGTCTTTTCAATTTCTATT
130 CGGCTCACATGCTGAGGTCTTTTCAATTTCTATT
*
49266136 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACAG
1 TTTCAATTTCTGTT-GTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACAG
* * *
49266201 CTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCGACTAATATTGCGAGAGGTGAGTTGAGCCT
65 CTGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCT
49266266 CGG
130 CGG
49266269 GACACGCTGA
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
163 23 0.19
164 98 0.81
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (163 bp):
TTTCAATTTCTGTTGTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACAGC
TGAGGTATATTTAAATTTCTGTTTGTCAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTC
GGCTCACATGCTGAGGTCTTTTCAATTTCTATT
Found at i:49266229 original size:89 final size:87
Alignment explanation
Indices: 49266047--49266230 Score: 237
Period size: 89 Copynumber: 2.1 Consensus size: 87
49266037 GCTGAGGTAA
* * * *
49266047 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG--CACAT
*
49266112 GCTGAGGTCTTTTCAATTTCTATT
64 GCTGAGGTCTTTTAAATTTCTATT
49266136 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGTTCGT--AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGCACA
* *
49266200 -GCTGAGGTATTTTTAAATTTCTGTT
63 TGCTGAGGT-CTTTTAAATTTCTATT
49266225 TTTCAA
1 TTTCAA
49266231 AAATCGACTA
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
88 8 0.10
89 38 0.45
91 36 0.43
92 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.38
Consensus pattern (87 bp):
TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGCACATGC
TGAGGTCTTTTAAATTTCTATT
Found at i:49266754 original size:224 final size:222
Alignment explanation
Indices: 49266513--49267513 Score: 961
Period size: 226 Copynumber: 4.5 Consensus size: 222
49266503 TTTGTTTTTC
* *
49266513 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
**
49266578 GTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 GTT-TT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* ** * *
49266643 TTTCAATTTCTGTTT-TCAAAATTCAACTTATATTGCGAGAAATAAGTTGAGCCTCAAG-ACACG
128 TTTCAATTTCTGTTTGTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACG
*
49266706 TTGAGGTATTTTCAATTTCTATTTTCAAAAA
192 CTGAGGTATTTTCAATTTCTATTTTCAAAAA
* *
49266737 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
* * * *
49266801 TCTGTATTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGT
63 TCTGT-TTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGA
*
49266866 GG-----T--A----T-TTT-T-----TTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-
123 GGTAATTTCAATTTCTGTTTGTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGC
* *
49266912 ACACGCTGAGGTAATTTCAATTTCTGTTGTT-AAAAA
187 ACACGCTGAGGTATTTTCAATTTCTATT-TTCAAAAA
** * *
49266948 AAAATCAACTCATATTGCGAGAAATGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
* * * ** * * *
49267013 GTTTT-CAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
66 GTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * * *
49267077 CAATTTCTG-TTGTAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCACGGTTCACAC
131 CAATTTCTGTTTGT---CAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACAC
* *
49267141 GCTGAGGTAATTTCAATTTCTGTTTGTC----A
191 GCTGAGGTATTTTCAATTTCTATTT-TCAAAAA
* * * * *
49267170 AAAATTAACTCATATTGCGAGAGGTGAGTTGAACCTC-GGCTCACATGCTAAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
* * *
49267234 TCTGTTCGTAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCAGGACACGCTGAGGT
63 TCTGTT--TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
* ** * * *
49267299 AATTTCAATTTCTGTTT-TCAAAATTCAACTTATATTGCGAGAAATAAGTTGAGGCTCAAG-ACA
126 AATTTCAATTTCTGTTTGTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACA
* *
49267362 CGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAA
190 CGCTGAGGTATTTTCAATTTCTATTTTC-AAAAA
* *
49267396 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
*
49267460 TCTGTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
63 TCTG---TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49267514 ATTACACACT
Statistics
Matches: 646, Mismatches: 80, Indels: 98
0.78 0.10 0.12
Matches are distributed among these distances:
203 8 0.01
205 34 0.05
208 4 0.01
209 25 0.04
210 1 0.00
211 94 0.15
212 4 0.01
214 3 0.00
215 1 0.00
216 4 0.01
217 1 0.00
221 5 0.01
222 62 0.10
223 33 0.05
224 92 0.14
225 30 0.05
226 132 0.20
227 61 0.09
228 50 0.08
229 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (222 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTTGTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGA
GGTATTTTCAATTTCTATTTTCAAAAA
Found at i:49266767 original size:148 final size:147
Alignment explanation
Indices: 49266499--49266836 Score: 419
Period size: 148 Copynumber: 2.2 Consensus size: 147
49266489 TAAGCCTTTT
* * ** * *
49266499 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAAGACACGCTGAGG
*
49266564 TAATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
65 TAATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GG
49266629 -ACACGCTGAGGTAATTTC
129 TACACGCTGAGGTAATTTC
* *
49266647 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATAAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATAAGTTGAGCCTCAAGACACGCTGAGG
* * **
49266712 TATTTTCAATTTCTATT-TTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGG
65 TAATTTCAATTTCTATTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG
* *
49266776 TTCACATGCTGAGGTATTTTC
129 -T-ACACGCTGAGGTAATTTC
*
49266797 AATTTCTGTATTTAAAAAAAAATCAACTCATATTGCGAGA
1 AATTTCTGT-TTT----CAAAATCAACTCATATTGCGAGA
49266837 GGTGAGTTGA
Statistics
Matches: 163, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
147 13 0.08
148 101 0.62
150 25 0.15
151 3 0.02
154 17 0.10
155 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (147 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTA
CACGCTGAGGTAATTTC
Found at i:49266873 original size:78 final size:75
Alignment explanation
Indices: 49266513--49266853 Score: 447
Period size: 76 Copynumber: 4.5 Consensus size: 75
49266503 TTTGTTTTTC
* *
49266513 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
49266578 GTTGTTAAAAA
66 GTT-TTAAAAA
** *
49266589 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
49266654 GTTTT---CA
66 GTTTTAAAAA
* * ** * * *
49266661 AAATTCAACTTATATTGCGAGAAATAAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
49266726 ATTTTCAAAAA
66 GTTTT-AAAAA
* *
49266737 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
49266801 TCTGTATTTAAAAA
63 TCTGT-TTTAAAAA
*
49266815 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49266854 ATTACACACT
Statistics
Matches: 234, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
72 64 0.27
75 3 0.01
76 99 0.42
78 64 0.27
79 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTAAAAA
Found at i:49266884 original size:359 final size:363
Alignment explanation
Indices: 49266516--49269105 Score: 1452
Period size: 359 Copynumber: 6.9 Consensus size: 363
49266506 GTTTTTCAAA
49266516 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
49266581 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
66 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
*
49266646 CAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATAAGTTGAGCCTCAAGACACGTTGAG
131 CAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
49266711 GTATTTTCAATTTCTATTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGG
196 GTATTTTCAATTTCTATTTT-AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCACGG
* *
49266776 TTCACATGCTGAGGTATTTTCAATTTCTGTATT-TAAAAAAAAATCAACTCATATTGCGAGAGGT
260 TTCACACGCTGAGGTAATTTCAATTTCTGT-TTGT---AAAAAATCAACTCATATTGCGAGAGGT
* * * **
49266840 GAGTTGAGCTTCAGATTACA-C-A-CTGTGGTA-TT-T-TT-T
321 GAGTTGAACCTCAGATCACAGCAAGCTGTGCAATTTCTGTTCT
49266876 -TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
*
49266940 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGTCTCAGGACACGCTGAGGTAATTT
66 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
49267005 CAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
131 CAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* *
49267070 GTATTTTCAATTTCTGTTGTAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCACGGT
196 GTATTTTCAATTTCTATTTTAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCACGGT
* *
49267135 TCACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTT
261 TCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
49267200 GAACCTCGGCTCACATGCTAAGGTCTTTTCAATTTCTGTTCGT
326 GAACCTCAGATCACA-GC-AA-G-CTGTGCAATTTCTGTTC-T
* * *
49267243 AAAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 -------ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
* * * * * * *
49267308 TTCTGTT-TT---CAAAATTCAACTTATATTGCGAGAAATAAGTTGAGGCTCAAGACACGTTGAG
59 TTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
* * **
49267369 GTATTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-
124 GTAATTTCAATTTCTGTTTTC-----AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCA
* * * * * *
49267433 GGTTCACATGCTGAGGTATTTTCAATTTCTGTTTTTTTAAAAAAAATCAACTCATATTGCGAGAG
184 AG---ACACGTTGAGGTATTTTCAATTTC--TATTTTAAAAAAAAATCAACTTATATTGCGAGAG
* * *
49267498 GTGAGTTGAGCTTCA-GATT-ACACACTGTGGT-ATTT---TTTC-----------AAT----TC
244 GTGAGTTGAGC--CACGGTTCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAAATCAACTC
* *** * * * *
49267542 ATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACAATGAGGTAATTTCAAATTCTGTTTGTCAAG
307 ATATTGCGAGAGGTGAGTTGAACCTCA-GATCACAGCAAGCT--GTGCAATTTCTG--T-TC---
*
49267606 A
363 T
* * ** *
49267607 ATCAACTCATATTGCAAGAGGT--G--G-G--T--TGA-AC-CT--TTTAATTTC---TACT-TT
1 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
* * ** * * *
49267655 -TT----CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTT
66 GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * ** ***
49267715 CAATTTTTGTTTTCATTATTATGTTTTTGAAAGAATCAACTCGTATTGCGAGAGGCGAGTTGAGC
131 CAA-------TTTC-------TG-TTTTCAAA-ATTCAACTTATATTGCGAGAAATGAGTTGAGC
**
49267780 CTCAAGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAAAATC
180 CTCAAG--ACACGTTGAGGTATTTTCAATTTC------T--A------T-TTT-AAAAAAAAATC
* * *
49267845 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTGAATTTCTG-T
227 AACTTATATTGCGAGAGGTGAGTTGAGCCAC-GGTTCACACGCTGAGGTAATTTCAATTTCTGTT
* * * *
49267906 TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA-CAC-GCTGAGGTAATT
291 TGT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-AGATCACAGC-AAGCT--GT
* *
49267969 TCAATTTCTGTTTGTCAAAA
350 GCAATTTCTG--T-TC---T
* * **
49267989 ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACTTGCTGAGGTCTTTTCAATTTCT
1 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTAATTTCAATTTCT
* **
49268053 GTTTTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
63 G----------T-TGTT--AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
* * * * * **
49268118 CA-GCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGA
115 CACGCTGAGGTA-ATTTCAATTTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGA
*** * * * * * *
49268182 GCCTTGGGACACGCTGAGGTAATTTCAATTTCTGTTTGT---CAAAAATTAACTCATATTGCGAG
178 GCCTCAAGACACGTTGAGGTATTTTCAATTTCTATTT-TAAAAAAAAATCAACTTATATTGCGAG
* * * * * ** *
49268244 AGGTGAGTTAAGCCTCGGCTCACATGCTGAAGTCTTTTCAATTTCTGTTCGTAAAAAAAAATCAA
242 AGGTGAGTTGAGCCACGGTTCACACGCTGAGGTAATTTCAATTTCTGTTTGT---AAAAAATCAA
* * * * **
49268309 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CAC-GCTGAGGTATTTTTAAATTTCTGTTTT
304 CTCATATTGCGAGAGGTGAGTTGAACCTCA-GATCACAGC--AAG--CTGTGCAATTTCTG---T
*
49268372 TCAAAA
361 TC---T
* * *
49268378 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
* * * * *
49268443 -TGT---CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCACATGCCGAGGTC
66 GT-TAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTA
* * * **
49268503 TTTTCAATTTCTGTTTTTCAATTTCTGCTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
127 ATTTCAATTTCTG---------TT-T--TC------AAAATTCAACTTATATTGCGAGAAATGAG
* * * * ** * *
49268568 TTGAGCCTCAGGACA-GCTGAGGTATTTTTAAATTTCTGTTTT--TCAAAAATCGACTCATATTG
174 TTGAGCCTCAAGACACGTTGAGGTA-TTTTCAATTTCTATTTTAAAAAAAAATCAACTTATATTG
* * * * *
49268630 CGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAATTTCTATTTGTCAAAAATTA
238 CGAGAGGTGAGTTGAGCCACGGTTCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAAATCA
* * * *
49268693 ACTCATATTGCGAGAGGTGAGTT-AAGCCTCGGCTCACATGCTGAAGTCTTTTCAATTTCTGTTC
303 ACTCATATTGCGAGAGGTGAGTTGAA-CCTCAGATCACA-GC--AAG-CTGTGCAATTTCTGTTC
49268757 GT
363 -T
* * *
49268759 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAA
1 -------ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAA
** ** *
49268824 TTTCTGTT-TT--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
58 TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
* ** *
49268886 GGTAATTTCAATTTCTGTTTGTCAAAAATT-AACTCATATTGCGAGAGCTGAGTTGAGCCTC-GG
123 GGTAATTTCAATTTCTGTTT-TC-AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAG
* * * *
49268949 CTCACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTTTTCAAAAAAATCAACTCAT
186 ---ACACGTTGAGGTATTTTCAATTTCTATT-TT-AA------------AAAAAAATCAACTTAT
* * * * *
49269014 ATTGCGAAAGCTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
234 ATTGCGAGAGGTGAGTTGAGCCACGGTTCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAA
* *
49269077 ATTAACTCATATGGCGAGAGGTGAGTTGA
299 ATCAACTCATATTGCGAGAGGTGAGTTGA
49269106 GTCTCGGCTC
Statistics
Matches: 1841, Mismatches: 184, Indels: 381
0.77 0.08 0.16
Matches are distributed among these distances:
339 49 0.03
340 4 0.00
341 3 0.00
344 7 0.00
346 6 0.00
347 2 0.00
348 2 0.00
349 3 0.00
350 57 0.03
351 1 0.00
352 1 0.00
353 2 0.00
354 6 0.00
355 41 0.02
357 24 0.01
358 73 0.04
359 223 0.12
361 32 0.02
362 19 0.01
363 9 0.00
364 41 0.02
365 5 0.00
366 4 0.00
367 1 0.00
369 2 0.00
370 32 0.02
371 108 0.06
372 16 0.01
373 25 0.01
374 9 0.00
375 63 0.03
376 43 0.02
377 2 0.00
378 27 0.01
379 4 0.00
380 51 0.03
381 6 0.00
382 85 0.05
383 6 0.00
384 41 0.02
385 37 0.02
386 34 0.02
387 54 0.03
388 222 0.12
389 118 0.06
390 100 0.05
391 1 0.00
392 2 0.00
395 2 0.00
396 1 0.00
397 5 0.00
400 3 0.00
402 22 0.01
404 32 0.02
405 10 0.01
411 1 0.00
412 5 0.00
413 2 0.00
418 8 0.00
419 47 0.03
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (363 bp):
ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
GTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTATTTTAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCACGGT
TCACACGCTGAGGTAATTTCAATTTCTGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAACCTCAGATCACAGCAAGCTGTGCAATTTCTGTTCT
Found at i:49266949 original size:133 final size:137
Alignment explanation
Indices: 49266741--49267429 Score: 496
Period size: 149 Copynumber: 4.8 Consensus size: 137
49266731 CAAAAAAAAA
*
49266741 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTG
1 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTG
* *
49266805 TAT-TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT-TCAGATTACACACTGTGG
63 T-TGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCTCAG--GACACACTGAGG
49266868 -T-A-T-TTTT-T
125 TTAATTGTTTTAT
* * *
49266876 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTG
** *
49266941 TTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG-TCTCAGGACACGCTGAGGTAATTT
66 TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCTCAGGACACACTGAGG----TT
49267005 CAATTTCTGTTTTCAAAAT
127 -AA--T-TGTTTT----AT
** * *
49267024 TCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTG
1 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTG
* * *
49267089 -TAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGC-CAC-GGTTCACACGCTGAGGTAA
66 TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCTCAGG---ACACACTGAGG---
49267151 TTTCAATTTCTGTTTGTCAAAAAT
125 -TT-AA--T-TGTTT-T-----AT
* * * * *
49267175 T-AACTCATATTGCGAGAGGTGAGTTGAACCTC-GGCTCACATGCTAAGGTCTTTTCAATTTCTG
1 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTG
* * *
49267238 TTCG-T-AAAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGC-CTCAGGACACGCTGAGGTA
63 TT-GTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCTCAGGACACACTGAGG--
49267300 ATTTCAATTTCTGTTTTCAAAAT
125 --TT-AA--T-TGTTTT----AT
** * * * *
49267323 TCAACTTATATTGCGAGAAATAAGTTGAGGCTCAAGACACGTTGAGGTATTTTCAATTTCTGTT-
1 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTG
*
49267387 TTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGC
66 TT--AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
49267430 CTCGGTTCAC
Statistics
Matches: 468, Mismatches: 49, Indels: 60
0.81 0.08 0.10
Matches are distributed among these distances:
131 9 0.02
132 2 0.00
133 67 0.14
135 31 0.07
136 3 0.01
138 1 0.00
142 1 0.00
143 4 0.01
146 3 0.01
147 62 0.13
148 65 0.14
149 91 0.19
150 58 0.12
151 6 0.01
152 61 0.13
153 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (137 bp):
TCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTG
TTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCTCAGGACACACTGAGGTTAATT
GTTTTAT
Found at i:49267276 original size:77 final size:74
Alignment explanation
Indices: 49266876--49267513 Score: 664
Period size: 72 Copynumber: 8.5 Consensus size: 74
49266866 GGTATTTTTT
*
49266876 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
49266941 TTAAAAAAAAA
66 -T-AAAAAAAA
** *
49266952 TCAACTCATATTGCGAGAAATGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
** *
49267016 T-TCAAAAT
66 TAAAAAAAA
* ** * * *
49267024 TCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
49267089 TAAAAAAAAA
66 T-AAAAAAAA
* *
49267099 TCAACTTATATTGCGAGAGGTGAGTTGAGCCAC-GGTTCACACGCTGAGGTAATTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
*
49267163 TTTGT--CAAAAA
63 -TTGTAAAAAAAA
* * * * **
49267174 TTAACTCATATTGCGAGAGGTGAGTTGAACCTC-GGCTCACATGCTAAGGTCTTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
49267238 TTCGTAAAAAAAA
63 TT-GTAAAAAAAA
* *
49267251 TCAACTCATATTGCGAAAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
** *
49267315 T-TCAAAAT
66 TAAAAAAAA
* ** * * * * * *
49267323 TCAACTTATATTGCGAGAAATAAGTTGAGGCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
49267388 TCAAAAAAAAAA
66 T---AAAAAAAA
* * *
49267400 TCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
*
49267464 TTTTTTTAAAAAAAA
63 ---TTGTAAAAAAAA
*
49267479 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49267514 ATTACACACT
Statistics
Matches: 474, Mismatches: 65, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
72 121 0.26
73 3 0.01
74 4 0.01
75 120 0.25
76 61 0.13
77 91 0.19
78 6 0.01
79 63 0.13
80 1 0.00
82 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (74 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
TAAAAAAAA
Found at i:49267820 original size:14 final size:14
Alignment explanation
Indices: 49267801--49267835 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
49267791 CGCCGAGGTA
49267801 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
49267815 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
49267829 CTTTCAA
1 TTTTCAA
49267836 AAAAAAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:49267870 original size:93 final size:90
Alignment explanation
Indices: 49267658--49267906 Score: 308
Period size: 88 Copynumber: 2.8 Consensus size: 90
49267648 CTACTTTTTC
* * *
49267658 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGGTATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
* **
49267722 TG-TTTTCATTATTATGTTTTTGAA
66 TGTTTTTCAATATTATGTTTTAAAA
* * *
49267746 AGAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT-ACACGCCGAGGTATTTTCAATTT
*
49267811 CTGTTTTTCAAT-TTCTGTCTTTCAAAAA
65 CTGTTTTTCAATATTATGT-TTT--AAAA
* * * *
49267839 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTGAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
49267903 TGTT
66 TGTT
49267907 GTCAAAAAAA
Statistics
Matches: 138, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
88 36 0.26
90 29 0.21
91 35 0.25
92 2 0.01
93 36 0.26
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (90 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTACACGCCGAGGTATTTTCAATTTC
TGTTTTTCAATATTATGTTTTAAAA
Found at i:49268060 original size:14 final size:14
Alignment explanation
Indices: 49268041--49268069 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
49268031 TGCTGAGGTC
49268041 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
49268055 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
49268069 T
1 T
49268070 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:49268148 original size:89 final size:87
Alignment explanation
Indices: 49267967--49268150 Score: 246
Period size: 89 Copynumber: 2.1 Consensus size: 87
49267957 GCTGAGGTAA
* * *
49267967 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACTT
1 TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--CACTA
*
49268032 GCTGAGGTCTTTTCAATTTCTGTT
64 GCTGAGGTCTTTTAAATTTCTGTT
*
49268056 TTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC-
1 TTTCAATTTCTGTTCGT--AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCACT
*
49268119 AGCTGAGGTATTTTTAAATTTCTGTT
63 AGCTGAGGT-CTTTTAAATTTCTGTT
49268145 TTTCAA
1 TTTCAA
49268151 AAATCGACTC
Statistics
Matches: 85, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
88 8 0.09
89 38 0.45
91 37 0.44
92 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (87 bp):
TTTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCACTAGC
TGAGGTCTTTTAAATTTCTGTT
Found at i:49268175 original size:73 final size:73
Alignment explanation
Indices: 49268076--49268985 Score: 902
Period size: 73 Copynumber: 12.0 Consensus size: 73
49268066 TGTTCGTAAA
*
49268076 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
49268140 CTGTTTTTC
65 CTGTTTTTC
* ** *
49268149 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
49268214 TGTTTGTC
66 TGTTTTTC
* * * * *
49268222 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GGCTCACATGCTGAAGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
***
49268286 TTCTGTTCGTAAAA
63 TTCTGTT--T-TTC
*
49268300 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
49268365 CTGTTTTTC
65 CTGTTTTTC
* * *
49268374 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
49268439 TGTTTGTC
66 TGTTTTTC
* * * *
49268447 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCACATGCCGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
49268511 TTCTGTTTTTC
63 TTCTGTTTTTC
** * * * * *
49268522 AATTTCTGCTCGTAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-
1 -A-----------AAAATCAACTCATATTGCGAGA--G-GTGAGTTGAG-----CCTCAGGACAC
*
49268583 GCTGAGGTATTTTTAAATTTCTGTTTTTC
46 GCTGAGGTA-TTTTCAATTTCTGTTTTTC
* * *
49268612 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
49268677 TATTTGTC
66 TGTTTTTC
* * * * *
49268685 AAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTC-GGCTCACATGCTGAAGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
***
49268749 TTCTGTTCGTAAA
63 TTCTGTT--TTTC
*
49268762 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
49268827 CTGTTTTTC
65 CTGTTTTTC
* *
49268836 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
49268901 TGTTTGTC
66 TGTTTTTC
* * * *
49268909 AAAAATTAACTCATATTGCGAGAGCTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
* *
49268973 TTCTATTCTTC
63 TTCTGTTTTTC
49268984 AA
1 AA
49268986 TTTCTGTTTT
Statistics
Matches: 694, Mismatches: 95, Indels: 94
0.79 0.11 0.11
Matches are distributed among these distances:
72 7 0.01
73 255 0.37
74 124 0.18
75 112 0.16
76 25 0.04
77 52 0.07
78 54 0.08
79 5 0.01
80 1 0.00
81 2 0.00
84 2 0.00
85 1 0.00
86 2 0.00
87 17 0.02
89 8 0.01
90 21 0.03
92 4 0.01
93 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:49268522 original size:14 final size:14
Alignment explanation
Indices: 49268503--49268529 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49268493 TGCCGAGGTC
49268503 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
49268517 TTTTCAATTTCTG
1 TTTTCAATTTCTG
49268530 CTCGTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:49268698 original size:238 final size:238
Alignment explanation
Indices: 49268278--49269112 Score: 1299
Period size: 238 Copynumber: 3.6 Consensus size: 238
49268268 TGCTGAAGTC
49268278 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTG-TCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
49268343 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
65 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** * *
49268408 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGT
130 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAGT
*
49268473 GAGTTGAGCCTCGGCTCACATGCCGAGGTCTTTTCAATTTCTGT
195 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
49268517 TTTTCAATTTCTGCTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTG-TCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
49268582 A-GCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAG
65 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
49268646 CCTCGGGACACGCTGAGGTAATTTCAATTTCTATTTGTCAAAAATTAACTCATATTGCGAGAGGT
130 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAGT
* *
49268711 GAGTTAAGCCTCGGCTCACATGCTGAAGTCTTTTCAATTTCTG-
195 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
49268754 -----------T-TCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
49268806 CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
49268871 CTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAG-AGCT
131 CTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAG-T
*
49268935 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTAT
195 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
* ** ** * * *
49268979 TCTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGACA
1 TTTTCAATTTCTGTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * * * *
49269044 CGCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATGGCGAGAGGTGAGTTGAGT
66 CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
49269108 CTCGG
131 CTCGG
49269113 CTCACATGCT
Statistics
Matches: 551, Mismatches: 29, Indels: 34
0.90 0.05 0.06
Matches are distributed among these distances:
223 48 0.09
224 167 0.30
226 1 0.00
236 1 0.00
237 55 0.10
238 214 0.39
239 65 0.12
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (238 bp):
TTTTCAATTTCTGTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAGTG
AGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGT
Found at i:49268765 original size:462 final size:461
Alignment explanation
Indices: 49267815--49269112 Score: 2203
Period size: 462 Copynumber: 2.8 Consensus size: 461
49267805 CAATTTCTGT
*
49267815 TTTTCAATTTCTG-TCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTCAATTTCTGTTC-GT-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
49267879 ACACGCTGAGGTA-ATTTGAATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
64 ACACGCTGAGGTATTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGT
*
49267942 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAG
127 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAG
* *
49268007 AGGTGAGTTGAGCCTCGGCTCACTTGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCG
192 AAGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTG-TCG
49268072 TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTTAAA
256 TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTTAAA
*
49268137 TTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGT
321 TTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
*
49268202 AATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCAC
386 AATTTCAATTTCTATTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCAC
49268267 ATGCTGAAGTC
451 ATGCTGAAGTC
49268278 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
49268343 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
49268408 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGT
131 CCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGT
*
49268473 GAGTTGAGCCTCGGCTCACATGCCGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGCTCGTAAA
196 GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTG-TCGT-AA
49268538 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTTAAATTT
259 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTTAAATTT
49268603 CTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
324 CTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
49268668 TTCAATTTCTATTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATG
389 TTCAATTTCTATTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATG
49268733 CTGAAGTC
454 CTGAAGTC
49268741 TTTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
49268805 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** *
49268870 CCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAG-AGC
131 CCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAG-
* * ** *
49268934 TGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTCTTCAATTTCTGTTTTTCA
195 TGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTG-TCGTAA
* * * * *
49268999 AAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATT
259 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-GCTGAGGTATTTTTAAATT
* ** * *
49269063 TCTGTTTGTCAAAAATTAACTCATATGGCGAGAGGTGAGTTGAGTCTCGG
323 TCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
49269113 CTCACATGCT
Statistics
Matches: 796, Mismatches: 33, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
461 97 0.12
462 447 0.56
463 246 0.31
464 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (461 bp):
TTTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGT
GAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTCGTAAAA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAGCTGAGGTATTTTTAAATTTCT
GTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
CAATTTCTATTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACATGCT
GAAGTC
Found at i:49268998 original size:14 final size:14
Alignment explanation
Indices: 49268965--49268999 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
49268955 TGCTGAGGTC
49268965 TTTTCAATTTCTAT
1 TTTTCAATTTCTAT
* *
49268979 TCTTCAATTTCTGT
1 TTTTCAATTTCTAT
49268993 TTTTCAA
1 TTTTCAA
49269000 AAAAATCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAT
Found at i:49269059 original size:89 final size:88
Alignment explanation
Indices: 49268892--49269065 Score: 251
Period size: 89 Copynumber: 2.0 Consensus size: 88
49268882 CTGAGGTAAT
* * *
49268892 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGCTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGC-CACACG
**
49268957 CTGAGGTCTTTTCAATTTCTATTC
65 CTGAGGTAATTTCAATTTCTATTC
* *
49268981 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGG-GACAC
1 TTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGCCACAC
49269045 GCTGAGGTAATTTCAATTTCT
64 GCTGAGGTAATTTCAATTTCT
49269066 GTTTGTCAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
89 38 0.50
91 38 0.50
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (88 bp):
TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGCCACACGC
TGAGGTAATTTCAATTTCTATTC
Found at i:49269140 original size:75 final size:74
Alignment explanation
Indices: 49268981--49269127 Score: 188
Period size: 73 Copynumber: 2.0 Consensus size: 74
49268971 ATTTCTATTC
* * *
49268981 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGACACG
1 TTCAATTTCTGTTTGTC-AAAAAATCAACTCATATGGCGAAAGCTGAGTTGAGCCTCGGCACACG
49269046 CTGAGGTAAT
65 CTGAGGTAAT
* * * * *
49269056 TTCAATTTCTGTTTGTC-AAAAATTAACTCATATGGCGAGAGGTGAGTTGAGTCTCGGCTCACAT
1 TTCAATTTCTGTTTGTCAAAAAATCAACTCATATGGCGAAAGCTGAGTTGAGCCTCGG--CACAC
49269120 GCTGAGGT
64 GCTGAGGT
49269128 CTTTTTAATT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 35 0.56
75 27 0.44
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (74 bp):
TTCAATTTCTGTTTGTCAAAAAATCAACTCATATGGCGAAAGCTGAGTTGAGCCTCGGCACACGC
TGAGGTAAT
Found at i:49269151 original size:14 final size:14
Alignment explanation
Indices: 49269128--49269178 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
49269118 ATGCTGAGGT
*
49269128 CTTTTTAATTTCTA
1 CTTTTCAATTTCTA
49269142 CTTTTCAATTTCTA
1 CTTTTCAATTTCTA
* *
49269156 TTTTTTCAATTTATA
1 -CTTTTCAATTTCTA
*
49269171 TTTTTCAA
1 CTTTTCAA
49269179 AAATCAACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.63
Consensus pattern (14 bp):
CTTTTCAATTTCTA
Found at i:49269163 original size:15 final size:15
Alignment explanation
Indices: 49269129--49269175 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
49269119 TGCTGAGGTC
49269129 TTTTT-AATTTCTA-
1 TTTTTCAATTTCTAT
*
49269142 CTTTTCAATTTCTAT
1 TTTTTCAATTTCTAT
*
49269157 TTTTTCAATTTATAT
1 TTTTTCAATTTCTAT
49269172 TTTT
1 TTTT
49269176 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 4 0.14
14 8 0.28
15 17 0.59
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCAATTTCTAT
Found at i:49269426 original size:76 final size:76
Alignment explanation
Indices: 49269300--49269642 Score: 437
Period size: 72 Copynumber: 4.5 Consensus size: 76
49269290 TTTGTTTTTC
* *
49269300 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCATTTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
49269365 GTTGTT-AAAAA
66 GTT-TTAAAAAA
**
49269376 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
49269441 GTTTT----CA
66 GTTTTAAAAAA
* * ** * * *
49269448 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
49269513 GTTTTCAAAAAA
66 GTTTT-AAAAAA
* * * *
49269525 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
49269589 TCTGTTTTTAAAAAA
63 TCTG-TTTTAAAAAA
*
49269604 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49269643 ATTACACACT
Statistics
Matches: 239, Mismatches: 18, Indels: 16
0.88 0.07 0.06
Matches are distributed among these distances:
72 66 0.28
75 2 0.01
76 65 0.27
77 35 0.15
79 66 0.28
80 5 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAAA
Done.