Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 168 of 199
Found at i:49269662 original size:79 final size:76
Alignment explanation
Indices: 49269300--49269642 Score: 435
Period size: 79 Copynumber: 4.5 Consensus size: 76
49269290 TTTGTTTTTC
* * *
49269300 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCATTTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
49269365 GTTGTTAAAAA
66 GTTTTTAAAAA
** *
49269376 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
49269441 G-TTTT---CA
66 GTTTTTAAAAA
* * ** * *
49269448 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
49269513 GTTTTCAAAAAA
66 GTTTT-TAAAAA
* * *
49269525 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
49269589 TCTGTTTTTAAAAAA
63 TCTGTTTTT-AAAAA
*
49269604 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
49269643 ATTACACACT
Statistics
Matches: 236, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
72 62 0.26
73 3 0.01
75 3 0.01
76 63 0.27
77 35 0.15
79 69 0.29
80 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTAAAAA
Found at i:49269877 original size:72 final size:73
Alignment explanation
Indices: 49269796--49269937 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
49269786 TCAAAATCAG
* * *
49269796 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
49269860 AATTTCAA
66 AATTTCAA
* *
49269868 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
49269933 AATTT
66 AATTT
49269938 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:49270119 original size:77 final size:74
Alignment explanation
Indices: 49269941--49270204 Score: 342
Period size: 77 Copynumber: 3.5 Consensus size: 74
49269931 TTAATTTATG
* *
49269941 TTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG--ACGCTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
49270004 C-AATTTTTGT
65 CAAATTTTT-T
*
49270014 TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATATTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
49270077 CAAATTCTATTT
65 CAAATT-T-TTT
* **
49270089 TTATCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
49270154 C-AATTTTTGCT
65 CAAATTTTT--T
* *
49270165 TTTTAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
49270205 TCTCGGGCCA
Statistics
Matches: 170, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
71 40 0.24
73 16 0.09
74 8 0.05
75 42 0.25
76 9 0.05
77 55 0.32
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (74 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AAATTTTTT
Found at i:49270485 original size:70 final size:70
Alignment explanation
Indices: 49270365--49270498 Score: 241
Period size: 70 Copynumber: 1.9 Consensus size: 70
49270355 TTTTAATTCA
* *
49270365 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTA
49270430 TCATC
66 TCATC
*
49270435 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTT
49270499 CTGCTCAATT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (70 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTA
TCATC
Found at i:49270613 original size:71 final size:73
Alignment explanation
Indices: 49270503--49270666 Score: 217
Period size: 76 Copynumber: 2.2 Consensus size: 73
49270493 CAATTTCTGC
* *
49270503 TCAATTTATGTTTTTC-AAAAATCAACTCATGTTGCGAGAGGTGAGTTGAG-C-CTCACATGCTG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCACTCACATGCTG
*
49270565 AGGTGTTT
66 AGGTCTTT
* *
49270573 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCAGCTCACATG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG--TCA-CTCACATG
49270638 CTGAGGTCTTT
63 CTGAGGTCTTT
* *
49270649 TTAATTTCTGCTTTTCAA
1 TCAATTTCTGTTTTTCAA
49270667 TTTCTGTTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
70 14 0.17
71 32 0.40
74 1 0.01
76 33 0.41
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (73 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCACTCACATGCTG
AGGTCTTT
Found at i:49270664 original size:76 final size:70
Alignment explanation
Indices: 49270503--49270666 Score: 211
Period size: 71 Copynumber: 2.3 Consensus size: 70
49270493 CAATTTCTGC
* *
49270503 TCAATTTATGTTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGG
1 TCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGG
*
49270568 TGTTT
66 TCTTT
* *
49270573 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCAGCTCACATG
1 TCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG---C--CTCACATG
49270638 CTGAGGTCTTT
60 CTGAGGTCTTT
* *
49270649 TTAATTTCTGCTTTTCAA
1 TCAATTTCTGTTTTTCAA
49270667 TTTCTGTTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
70 14 0.17
71 32 0.40
74 1 0.01
75 2 0.03
76 31 0.39
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (70 bp):
TCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGG
TCTTT
Found at i:49270668 original size:14 final size:15
Alignment explanation
Indices: 49270643--49270684 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
49270633 ACATGCTGAG
*
49270643 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
49270658 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
49270672 GTTTTTTCAATTT
1 GTCTTTTCAATTT
49270685 ATATTTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:49270680 original size:15 final size:15
Alignment explanation
Indices: 49270646--49270696 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
49270636 TGCTGAGGTC
49270646 TTTTT-AATTTCTG-
1 TTTTTCAATTTCTGT
*
49270659 CTTTTCAATTTCTGT
1 TTTTTCAATTTCTGT
* *
49270674 TTTTTCAATTTATAT
1 TTTTTCAATTTCTGT
49270689 TTTTTCAA
1 TTTTTCAA
49270697 AAAAATCAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 4 0.12
14 8 0.25
15 20 0.62
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (15 bp):
TTTTTCAATTTCTGT
Found at i:49270760 original size:105 final size:105
Alignment explanation
Indices: 49270570--49270771 Score: 266
Period size: 105 Copynumber: 1.9 Consensus size: 105
49270560 TGCTGAGGTG
* * * * *
49270570 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCAGCTCAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGCGCAC
* ** *
49270635 ATGCTGAGGTCTTTTTAATTTCTGCTTT-TCAATTTCTGTT
66 ACGCTGAGGTAATTTCAATTTCTG-TTTGTCAATTTCTGTT
*
49270675 TTTTCAATTTATATTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC-G-GG
1 TTTTCAATTTATA-TTTTTC-AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGCGC
49270738 ACACGCTGAGGTAATTTCAATTTCTGTTTGTCAA
64 ACACGCTGAGGTAATTTCAATTTCTGTTTGTCAA
49270772 AAATTAACTC
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
104 3 0.04
105 38 0.45
106 7 0.08
107 36 0.43
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (105 bp):
TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGCGCAC
ACGCTGAGGTAATTTCAATTTCTGTTTGTCAATTTCTGTT
Found at i:49270798 original size:73 final size:73
Alignment explanation
Indices: 49270697--49270958 Score: 407
Period size: 73 Copynumber: 3.5 Consensus size: 73
49270687 ATTTTTTCAA
49270697 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
49270762 TGTTTGTC
66 TGTTTGTC
* * * * *
49270770 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
*
49270835 CTGTTTTTC
65 CTGTTTGTC
*
49270844 AAAAAAATCAACTCATATTTCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
49270909 TCTGTTTGTC
64 TCTGTTTGTC
* * *
49270919 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGG
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG
49270959 CTCACATGCT
Statistics
Matches: 169, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
73 87 0.51
74 16 0.09
75 16 0.09
76 50 0.30
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTC
Found at i:49270821 original size:178 final size:175
Alignment explanation
Indices: 49270503--49270845 Score: 467
Period size: 178 Copynumber: 1.9 Consensus size: 175
49270493 CAATTTCTGC
* * *
49270503 TCAATTTATGTTTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCACATGCTGAGG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCACACGCTGAGG
** * * *
49270568 TGTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCAGCTC
66 TAATTTCAATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGC-C
* *
49270633 ACATGCTGAGGTCTTTTT-AATTTCTGCTTTTCAATTTCTGTTTTT
130 ACACGCTGAGGTATTTTTAAATTTCTGCTTTTCAATTTCTGTTTTT
*
49270678 TCAATTTATATTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACG
1 TCAATTTAT-GTTTTTC--AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTC---ACACG
* *
49270743 CTGAGGTAATTTCAATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
60 CTGAGGTAATTTCAATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
49270807 CAG-GACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAA
125 CAGCCACACGCTGAGGTATTTTTAAATTTCTGCTTTTCAA
49270846 AAAAATCAAC
Statistics
Matches: 146, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
175 9 0.06
176 6 0.04
178 52 0.36
179 15 0.10
180 37 0.25
181 27 0.18
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (175 bp):
TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCACACGCTGAGG
TAATTTCAATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCCA
CACGCTGAGGTATTTTTAAATTTCTGCTTTTCAATTTCTGTTTTT
Found at i:49270880 original size:76 final size:75
Alignment explanation
Indices: 49270689--49270995 Score: 406
Period size: 73 Copynumber: 4.1 Consensus size: 75
49270679 CAATTTATAT
49270689 TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
1 TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
49270754 TCAATTTCTG
66 TCAATTTCTG
* * * * *
49270764 TTTGTC--AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
1 TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-AT
*
49270827 TTAAATTTCTG
65 TTCAATTTCTG
*
49270838 TTTTTCAAAAAAATCAACTCATATTTCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
1 TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
49270903 TCAATTTCTG
66 TCAATTTCTG
* * * * * * **
49270913 TTTGTC--AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCT
1 TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAA
*
49270976 TTTTAATTTCTG
64 TTTCAATTTCTG
*
49270988 CTTTTCAA
1 TTTTTCAA
49270996 TTTCTGTTTT
Statistics
Matches: 200, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
73 87 0.44
74 16 0.08
75 47 0.23
76 50 0.25
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (75 bp):
TTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT
TCAATTTCTG
Found at i:49270973 original size:329 final size:325
Alignment explanation
Indices: 49270342--49271059 Score: 946
Period size: 329 Copynumber: 2.2 Consensus size: 325
49270332 TCCATTTCTA
* * * * *
49270342 TTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGT
1 TTTTCAATTTATATTTT--TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
* *
49270407 CACATTGAGGTATTTTCAATTTATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
64 CACACTGAGGTAATTTCAATTTATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
* * *
49270472 CAAGACACGTTGAGGTATTTTCAATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATGTTG
129 CAAGACACGCTGAGG----TT-AATTTCT-CTAAATTTATGTTTTTCAAAAATCAACTCATATTG
* * ** *
49270537 CGAGAGGTGAGTTGAGCCTCACATGCTGAGGTGTTTTCAATTTCTATTTTTCAAAAAATCAACTC
188 CGAAAGGTGAGTTGAGCCTCACACGCTGAGGTAATTTCAATTTCTATTTGTCAAAAAATCAACTC
*
49270602 ATATTGTGAGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCAA
253 ATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCAA
49270667 TTTCTGTT
318 TTTCTGTT
* **
49270675 TTTTCAATTTATATTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTATATTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * ** * *
49270740 ACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGC
65 ACACTGAGGTAATTTCAA-TT-T-ATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
* * *
49270805 CTCAGGACACGCTGAGG-T-ATTT-T-TAAATTTCTGTTTTTCAAAAAAATCAACTCATATTTCG
127 CTCAAGACACGCTGAGGTTAATTTCTCTAAATTTATGTTTTTC--AAAAATCAACTCATATTGCG
* *
49270866 AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAATTAACT
190 AAAGGTGAGTTGAGCCTC---ACACGCTGAGGTAATTTCAATTTCTATTTGTCAAAAAATCAACT
*
49270930 CATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCA
252 CATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCA
49270995 ATTTCTGTT
317 ATTTCTGTT
*
49271004 TTTTCAATTTATA-TTTTTC-AAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTTTCAATTTATATTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
49271060 TGGGTTCACA
Statistics
Matches: 343, Mismatches: 33, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
325 14 0.04
326 35 0.10
327 36 0.10
328 10 0.03
329 95 0.28
330 28 0.08
331 3 0.01
332 53 0.15
333 17 0.05
334 1 0.00
335 51 0.15
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (325 bp):
TTTTCAATTTATATTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CACTGAGGTAATTTCAATTTATCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
AGACACGCTGAGGTTAATTTCTCTAAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGT
GAGTTGAGCCTCACACGCTGAGGTAATTTCAATTTCTATTTGTCAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCAATTTCTGTT
Found at i:49270997 original size:14 final size:15
Alignment explanation
Indices: 49270972--49271013 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
49270962 ACATGCTGAG
*
49270972 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
49270987 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
49271001 GTTTTTTCAATTT
1 GTCTTTTCAATTT
49271014 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:49271009 original size:15 final size:14
Alignment explanation
Indices: 49270975--49271024 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
49270965 TGCTGAGGTC
49270975 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
49270988 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
49271002 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
49271017 TTTTTCAA
1 TTTTTCAA
49271025 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:49271808 original size:30 final size:30
Alignment explanation
Indices: 49271772--49271946 Score: 278
Period size: 30 Copynumber: 5.8 Consensus size: 30
49271762 ACTTTTCTCA
*
49271772 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
49271802 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
49271832 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
49271862 ACTAGCCACACCTTTTCTAGCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
49271892 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
49271922 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
49271947 CTTGTACCTA
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 131 1.00
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:49271837 original size:60 final size:60
Alignment explanation
Indices: 49271772--49271946 Score: 314
Period size: 60 Copynumber: 2.9 Consensus size: 60
49271762 ACTTTTCTCA
*
49271772 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
* *
49271832 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCTAGCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
*
49271892 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
49271947 CTTGTACCTA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 109 1.00
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:49272470 original size:23 final size:23
Alignment explanation
Indices: 49272433--49272564 Score: 72
Period size: 25 Copynumber: 5.5 Consensus size: 23
49272423 TTTTTTTTGT
49272433 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
49272456 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
** *
49272478 TATTAGGTATATT-TTAAATTTTA
1 TATTATATATATTCTT-AATATTA
* * *
49272501 TATTACGTATATATATATTTTATACTA
1 TATTA--TATATAT-T-CTTAATATTA
* *
49272528 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
49272553 TATTATTTATAT
1 TATTATATATAT
49272565 ATATATTTTT
Statistics
Matches: 81, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.19
23 19 0.23
24 4 0.05
25 30 0.37
26 1 0.01
27 8 0.10
28 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:49272538 original size:25 final size:25
Alignment explanation
Indices: 49272510--49272648 Score: 97
Period size: 25 Copynumber: 5.5 Consensus size: 25
49272500 ATATTACGTA
*
49272510 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* * * *
49272535 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATG
* * *
49272560 TATATATATATTTTTAC-ATGTTATCT
1 TATATATAT-TTTATACTATATTAT-G
*
49272586 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
49272612 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
49272637 TACATAT-TTTTA
1 TATATATATTTTA
49272649 ATATTATCAC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
23 3 0.03
24 6 0.07
25 54 0.61
26 11 0.12
27 8 0.09
28 7 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:49272560 original size:30 final size:28
Alignment explanation
Indices: 49272498--49272599 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
49272488 ATTTTAAATT
* * * *
49272498 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
49272525 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
49272555 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
49272580 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
49272600 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:49272686 original size:23 final size:21
Alignment explanation
Indices: 49272628--49272686 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 21
49272618 TTTTTAACAC
49272628 TATATTATGTACATA-TTTTT
1 TATATTATGTACATATTTTTT
* * *
49272648 AATATTAT-CACGTATTTATTT
1 TATATTATGTACATATTT-TTT
49272669 TATATATATGTACATATT
1 TATAT-TATGTACATATT
49272687 GATGTAGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
19 4 0.14
20 9 0.31
21 7 0.24
22 3 0.10
23 6 0.21
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (21 bp):
TATATTATGTACATATTTTTT
Found at i:49272825 original size:16 final size:15
Alignment explanation
Indices: 49272801--49272848 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
49272791 TAATTATTAT
*
49272801 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
49272817 TATTTTAATATTTTA
1 TATTTTAATATTTTA
49272832 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
49272848 T
1 T
49272849 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:49272836 original size:7 final size:8
Alignment explanation
Indices: 49272801--49272852 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
49272791 TAATTATTAT
*
49272801 TATTCTAA
1 TATTTTAA
*
49272809 TATTTTGA
1 TATTTTAA
49272817 TATTTTAA
1 TATTTTAA
49272825 TATTTT-A
1 TATTTTAA
49272832 TATTTTATA
1 TATTTTA-A
*
49272841 TATTTTAT
1 TATTTTAA
49272849 TATT
1 TATT
49272853 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:49281743 original size:60 final size:61
Alignment explanation
Indices: 49281612--49281765 Score: 186
Period size: 60 Copynumber: 2.5 Consensus size: 61
49281602 AATTTCTAGT
* * * * *
49281612 CCCAAATTTTAAACCGTAGTTTAAAAAAGAA-TTCCTTTTCAAATTTTGATTATTTTAGTTTA
1 CCCAAATTATAAACCGTA-ATTAAAAAAAAACTT-TTTTTCAAATTTTGAATATTTTAGTTTA
* * * *
49281674 CCCAAATTATAAACGGTAATTACAAAAAAACTTTTTTTCAAATTTT-AATATTTTGGTTTG
1 CCCAAATTATAAACCGTAATTAAAAAAAAACTTTTTTTCAAATTTTGAATATTTTAGTTTA
*
49281734 CCCAAATTATAAACCGTAGTTAAAAAAAAACT
1 CCCAAATTATAAACCGTAATTAAAAAAAAACT
49281766 CTTTCTTCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
60 40 0.51
61 21 0.27
62 18 0.23
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (61 bp):
CCCAAATTATAAACCGTAATTAAAAAAAAACTTTTTTTCAAATTTTGAATATTTTAGTTTA
Found at i:49281926 original size:33 final size:33
Alignment explanation
Indices: 49281884--49281950 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
49281874 ATTTCACTTG
49281884 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
49281917 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
49281950 A
1 A
49281951 GATTAATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (33 bp):
ATTTCCTCTGACTATTAATTGAAAATCTATGGA
Found at i:49283292 original size:10 final size:10
Alignment explanation
Indices: 49283255--49283296 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
49283245 TAGTAACATT
49283255 ACAAAATG-A
1 ACAAAATGAA
*
49283264 ACAAAGT-AA
1 ACAAAATGAA
49283273 ACAAAA-GAA
1 ACAAAATGAA
49283282 ACAAAATGAA
1 ACAAAATGAA
49283292 ACAAA
1 ACAAA
49283297 CTGCTCCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.71, C:0.12, G:0.10, T:0.07
Consensus pattern (10 bp):
ACAAAATGAA
Found at i:49291104 original size:13 final size:13
Alignment explanation
Indices: 49291086--49291112 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49291076 AAAAGTTTCT
49291086 TACCAAATCTATA
1 TACCAAATCTATA
49291099 TACCAAATCTATA
1 TACCAAATCTATA
49291112 T
1 T
49291113 TTTACCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
TACCAAATCTATA
Found at i:49304631 original size:41 final size:41
Alignment explanation
Indices: 49304585--49304663 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
49304575 TGTTTTACCA
*
49304585 AGCATGGACTCCCATGCCTATTGATTCTGTTATTGTATGAT
1 AGCATGAACTCCCATGCCTATTGATTCTGTTATTGTATGAT
*
49304626 AGCATGAACTCGCATGCCTATTGATTCTGTTATTGTAT
1 AGCATGAACTCCCATGCCTATTGATTCTGTTATTGTAT
49304664 TAATTATTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (41 bp):
AGCATGAACTCCCATGCCTATTGATTCTGTTATTGTATGAT
Found at i:49305038 original size:15 final size:15
Alignment explanation
Indices: 49305018--49305052 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
49305008 CATACATTTA
*
49305018 TTGTTCTTTTCTACT
1 TTGTTCTATTCTACT
*
49305033 TTGTTCTATTCTATT
1 TTGTTCTATTCTACT
49305048 TTGTT
1 TTGTT
49305053 GTACTACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.14, G:0.09, T:0.69
Consensus pattern (15 bp):
TTGTTCTATTCTACT
Found at i:49307658 original size:19 final size:18
Alignment explanation
Indices: 49307634--49307723 Score: 58
Period size: 19 Copynumber: 4.9 Consensus size: 18
49307624 ATTCCAAAAA
49307634 TAATATTATTTTAATAGTT
1 TAATATTATTTTAATA-TT
** **
49307653 TAATATTAAATTAATAAAA
1 TAATATTATTTTAAT-ATT
* *
49307672 TACTATTAATTTAATATT
1 TAATATTATTTTAATATT
* *
49307690 AAAGTGATTATCTT-A-ATT
1 TAA-T-ATTATTTTAATATT
49307708 TAATATTATTTTAATA
1 TAATATTATTTTAATA
49307724 AGATTTAATA
Statistics
Matches: 52, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
16 7 0.13
17 2 0.04
18 8 0.15
19 28 0.54
20 7 0.13
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.50
Consensus pattern (18 bp):
TAATATTATTTTAATATT
Found at i:49309866 original size:14 final size:14
Alignment explanation
Indices: 49309847--49309879 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
49309837 TTTCGAATTG
49309847 TACACGCGTTGGCC
1 TACACGCGTTGGCC
49309861 TACACGCGTTGGCC
1 TACACGCGTTGGCC
49309875 -ACACG
1 TACACG
49309880 GCTTGGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (14 bp):
TACACGCGTTGGCC
Found at i:49309885 original size:13 final size:13
Alignment explanation
Indices: 49309848--49309888 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
49309838 TTCGAATTGT
49309848 ACACGCGTTGGCC
1 ACACGCGTTGGCC
49309861 TACACGCGTTGGCC
1 -ACACGCGTTGGCC
49309875 ACACG-GCTTGGCC
1 ACACGCG-TTGGCC
49309888 A
1 A
49309889 TACGATCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 1 0.04
13 12 0.46
14 13 0.50
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (13 bp):
ACACGCGTTGGCC
Found at i:49311690 original size:43 final size:44
Alignment explanation
Indices: 49311587--49311701 Score: 119
Period size: 43 Copynumber: 2.6 Consensus size: 44
49311577 TCAGTTATCG
*
49311587 TGTAAGACCACGTCTGGGACGTTGGCATCAATTTGGGATTTACA
1 TGTAAGACCACGTCTGGGAAGTTGGCATCAATTTGGGATTTACA
* *** * *
49311631 TGTAAGGCCTTATCTGGGATAG-TGGCATCGATGTT-TGA-TTACA
1 TGTAAGACCACGTCTGGGA-AGTTGGCATCAAT-TTGGGATTTACA
*
49311674 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAGTTGGCAT
49311702 TGGACGAGCT
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.02
43 26 0.46
44 26 0.46
45 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCAATTTGGGATTTACA
Found at i:49313851 original size:13 final size:13
Alignment explanation
Indices: 49313833--49313857 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49313823 CATGGGCATA
49313833 TGGACCATACGGG
1 TGGACCATACGGG
49313846 TGGACCATACGG
1 TGGACCATACGG
49313858 CCCTTCACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (13 bp):
TGGACCATACGGG
Found at i:49314360 original size:38 final size:38
Alignment explanation
Indices: 49314282--49314377 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
49314272 ACAACCTTAT
* * * *
49314282 TGAATACATGTTAAAGCATGTTCACTACTTGTGTTGAAC
1 TGAATACATGTT-AAGCATGTTAACTACTAGTGATCAAC
* * *
49314321 TGAATACACGTTAAGCATGTTAATTCCTAGTGATCAAC
1 TGAATACATGTTAAGCATGTTAACTACTAGTGATCAAC
*
49314359 TGAATACATGTTACGCATG
1 TGAATACATGTTAAGCATG
49314378 ATTACTGCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
38 37 0.77
39 11 0.23
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (38 bp):
TGAATACATGTTAAGCATGTTAACTACTAGTGATCAAC
Found at i:49320239 original size:41 final size:41
Alignment explanation
Indices: 49320182--49320393 Score: 334
Period size: 41 Copynumber: 5.1 Consensus size: 41
49320172 TATCTTATGC
* * *
49320182 GATCTGAATCAGGTTATAAACCTAGTAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
* * * *
49320223 GATCTAAATCAGGTTATAAACCTAGCAGGCTAACTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
49320264 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
49320305 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
* *
49320346 GATCTGAATCAGGCTATATGCCTAGCAGGCTAAGTGCTGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
49320387 GAATCTG
1 G-ATCTG
49320394 TTAAATTAAG
Statistics
Matches: 161, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 156 0.97
42 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (41 bp):
GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
Found at i:49324092 original size:3 final size:3
Alignment explanation
Indices: 49324074--49324132 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
49324064 GAAATAAAAC
* *
49324074 TAA TAA CAA TTAA TAA TAA TAA TAA TAA TAA TAA T-A TGA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
49324119 CAT TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA
49324133 AATTGCTAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:49325147 original size:19 final size:18
Alignment explanation
Indices: 49325123--49325171 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
49325113 AAGTGGGCAT
49325123 GGCGGTGAGCAGGTTCGAC
1 GGCGGTG-GCAGGTTCGAC
49325142 GGCGGTGGGCAGGTTCGAC
1 GGCGGT-GGCAGGTTCGAC
*
49325161 GACGGTGGCAG
1 GGCGGTGGCAG
49325172 TGGCTGTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.18
19 22 0.79
20 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.51, T:0.14
Consensus pattern (18 bp):
GGCGGTGGCAGGTTCGAC
Found at i:49325868 original size:44 final size:44
Alignment explanation
Indices: 49325813--49326155 Score: 195
Period size: 44 Copynumber: 7.8 Consensus size: 44
49325803 AAAATTCGCC
*
49325813 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* * ** *
49325857 ATCTTCAATCTATTCCACTACTCCCCAGGGAGAT-AGAACTACT-
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTA-TA
** * * **
49325900 GGCTTCAATGC-ACTCCACTGTAAC--CTTAGGGAGGTAAAAT-TCACC
1 ATCTTCAAT-CTACTCCAC--T-ACTGCTTAGGGAGATAAGATCT-ATA
* *
49325945 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* **
49325989 ATCTTCAATCTATTCCACTACTGCCCAGGGAGAT-AGAAT-TACT-
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG-ATCTA-TA
** * ** * * ****
49326032 GGCTTCAATGTACTCCACTGTAAC--CACAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCAC--T-ACTGCTTAGGGAGATAAGATCTATA
* * * *
49326077 ATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* * *
49326121 ATCTTCAATCTATTCCACTGCTGCCTAGGGAGATA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATA
49326156 GGATTACTGG
Statistics
Matches: 220, Mismatches: 57, Indels: 44
0.69 0.18 0.14
Matches are distributed among these distances:
42 4 0.02
43 38 0.17
44 141 0.64
45 33 0.15
46 4 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
Found at i:49325991 original size:132 final size:132
Alignment explanation
Indices: 49325752--49326669 Score: 1106
Period size: 132 Copynumber: 7.1 Consensus size: 132
49325742 AGCAACATCG
49325752 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTA-AGGG-GGTAAAATTCGCCAT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC--ACAGGGAGGTAAAATTCGCCAT
* * *
49325815 CTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTACTC
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC-C
*
49325880 -CCCA
128 AACCA
* * ** *
49325884 GGGAGATAGAACTACTGGCTTCAATGCACTCCACTGTAACCTTAGGGAGGTAAAATTCACCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCT
* * ***
49325949 TCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAC
49326014 CA
131 CA
*
49326016 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCT
* **
49326081 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-CTGC
66 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAC
49326145 CTA
131 C-A
* * * *
49326148 GGGAGATAGGATTACTGGCTTCAATGTACCCCACTATAACCACAGGGAGGTAAAA-TCTGCCATT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCATC
* * * *
49326212 TTCGATCTGCTCCACTCCTGCTTAGGGAGATAAGATTTGAAATCTTTAATCTATTCCACTGCCAA
65 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
*
49326277 CTA
130 CCA
* * * **
49326280 GGGAGATAGAATTATTGACTTCAATGTACTCCACTATAGTCACA-GGAGGTAAAA-TCTGCCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCATC
* * *
49326343 TTCAATCTGCT-C-C-ACT--TT-GGGAGATAAGATATGAAATCTTCAATCTATTCCACTGCCAA
65 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
*
49326402 CTA
130 CCA
* *
49326405 GGGAGATAGAATTA-TCGGCTTCAATGTACTTCACTGTAATCACAGGGAGGTAAAA-TCTGCCAT
1 GGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCAT
* *
49326468 CTTCAATCCGCT-C-C-ACT--TT-GGGAGATAAGATCT-TCAATCTTCAATCTATTCCACTGCC
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCC
49326526 AACCA
128 AACCA
* * *
49326531 GGGTGAT-GAATTA-TCGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAAATT-GTCAT
1 GGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGT-AAAATTCGCCAT
* **
49326593 CTTCAATCTGCT-C-C-ACT--TT-GGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGCCA
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCA
49326652 ACCA
129 ACCA
49326656 GGGAGATAGAATTA
1 GGGAGATAGAATTA
49326670 TCAATCTTCC
Statistics
Matches: 717, Mismatches: 56, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
124 1 0.00
125 192 0.27
126 94 0.13
127 1 0.00
128 2 0.00
129 1 0.00
130 1 0.00
131 35 0.05
132 388 0.54
133 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAC
CA
Found at i:49327936 original size:7 final size:7
Alignment explanation
Indices: 49327920--49328019 Score: 71
Period size: 7 Copynumber: 13.7 Consensus size: 7
49327910 TGGCCTCTCC
49327920 TTTTTC-
1 TTTTTCT
49327926 TTTTTCT
1 TTTTTCT
*
49327933 TTTTTTT
1 TTTTTCT
49327940 CTTTTTCTT
1 -TTTTTC-T
49327949 TTCCTTTCT
1 TT--TTTCT
*
49327958 TCTTTCT
1 TTTTTCT
49327965 TTTCTTCTT
1 TTT-TTC-T
49327974 TTCTTTCT
1 TT-TTTCT
49327982 TTTTTCT
1 TTTTTCT
*
49327989 CTTTTCT
1 TTTTTCT
*
49327996 CTTTT-T
1 TTTTTCT
*
49328002 TTTCT-T
1 TTTTTCT
49328008 TTTTTCT
1 TTTTTCT
49328015 TTTTT
1 TTTTT
49328020 GAATATGAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
6 15 0.19
7 35 0.45
8 13 0.17
9 9 0.12
10 5 0.06
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTCT
Found at i:49327940 original size:9 final size:9
Alignment explanation
Indices: 49327926--49328019 Score: 79
Period size: 9 Copynumber: 10.3 Consensus size: 9
49327916 CTCCTTTTTC
49327926 TTTTTCTTT
1 TTTTTCTTT
49327935 TTTTTCTTTT
1 TTTTTC-TTT
49327945 TCTTTTCCTTT
1 T-TTTT-CTTT
49327956 CTTCTTTC-TT
1 -TT-TTTCTTT
*
49327966 TTCTTCTTT
1 TTTTTCTTT
*
49327975 TCTTTC--T
1 TTTTTCTTT
*
49327982 TTTTTCTCT
1 TTTTTCTTT
*
49327991 TTTCTCTTT
1 TTTTTCTTT
49328000 TTTTTC-TT
1 TTTTTCTTT
49328008 TTTTTCTTT
1 TTTTTCTTT
49328017 TTT
1 TTT
49328020 GAATATGAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 18
0.73 0.07 0.19
Matches are distributed among these distances:
7 6 0.09
8 11 0.16
9 32 0.46
10 6 0.09
11 9 0.13
12 5 0.07
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:49327944 original size:8 final size:8
Alignment explanation
Indices: 49327926--49328019 Score: 86
Period size: 8 Copynumber: 11.5 Consensus size: 8
49327916 CTCCTTTTTC
49327926 TTTTTCTT
1 TTTTTCTT
*
49327934 TTTTT-TC
1 TTTTTCTT
49327941 TTTTTCTT
1 TTTTTCTT
49327949 TTCCTTTC-T
1 TT--TTTCTT
*
49327958 TCTTTCTT
1 TTTTTCTT
*
49327966 TTCTTCTT
1 TTTTTCTT
49327974 TTCTTTC-T
1 TT-TTTCTT
49327982 TTTTTCTCT
1 TTTTTCT-T
*
49327991 TTTCTCTTT
1 TTTTTC-TT
49328000 TTTTTCTT
1 TTTTTCTT
49328008 TTTTTCTT
1 TTTTTCTT
49328016 TTTT
1 TTTT
49328020 GAATATGAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
7 14 0.20
8 34 0.49
9 17 0.24
10 5 0.07
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTCTT
Found at i:49327965 original size:17 final size:15
Alignment explanation
Indices: 49327922--49328018 Score: 105
Period size: 15 Copynumber: 6.6 Consensus size: 15
49327912 GCCTCTCCTT
*
49327922 TTTCTTTTTCTTTTT
1 TTTCTTTTTCTTTTC
49327937 TTTCTTTTTCTTTTCC
1 TTTCTTTTTCTTTT-C
49327953 TTTCTTCTTTCTTTTC
1 TTTCTT-TTTCTTTTC
49327969 -TTC-TTTTC-TTTC
1 TTTCTTTTTCTTTTC
*
49327981 TTT-TTTCTCTTTTC
1 TTTCTTTTTCTTTTC
*
49327995 TCTTTTTTTTCTTTT-
1 T-TTCTTTTTCTTTTC
49328010 TTTCTTTTT
1 TTTCTTTTT
49328019 TGAATATGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 15
0.79 0.04 0.17
Matches are distributed among these distances:
12 4 0.06
13 10 0.14
14 13 0.18
15 20 0.28
16 16 0.23
17 8 0.11
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTCTTTTTCTTTTC
Found at i:49327972 original size:25 final size:22
Alignment explanation
Indices: 49327921--49328017 Score: 90
Period size: 25 Copynumber: 4.2 Consensus size: 22
49327911 GGCCTCTCCT
49327921 TTTTCTTTTTC-TT-TTTTTTC
1 TTTTCTTTTTCTTTCTTTTTTC
* *
49327941 TTTTTCTTTTCCTTTCTTCTTTC
1 -TTTTCTTTTTCTTTCTTTTTTC
49327964 TTTTCTTCTTTTCTTTCTTTTTTCTC
1 TTTTC-T-TTTTCTTTC-TTTTT-TC
*
49327990 TTTTCTCTTTTTTTTCTTTTTTTC
1 TTTTCT-TTTTCTTTC-TTTTTTC
49328014 TTTT
1 TTTT
49328018 TTGAATATGA
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
21 10 0.15
22 7 0.11
23 7 0.11
24 14 0.22
25 20 0.31
26 7 0.11
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTCTTTTTCTTTCTTTTTTC
Found at i:49332509 original size:46 final size:47
Alignment explanation
Indices: 49332453--49332577 Score: 126
Period size: 46 Copynumber: 2.7 Consensus size: 47
49332443 TAATACGTTA
* * *
49332453 TGGATGAACCATTAGTCGAGCAGGTGACTGTTGGCTAAAATAT-TGG
1 TGGATGAACCATTAGTCGAGCAGATGACTGCTGACTAAAATATGTGG
* * * * *
49332499 TGGATGAACCATTGGTTGAGTAGATGATTGCTGACTAAAATATGTTG
1 TGGATGAACCATTAGTCGAGCAGATGACTGCTGACTAAAATATGTGG
* * * * *
49332546 TGGATAAACCACTGGTCTAGCATATGACTGCT
1 TGGATGAACCATTAGTCGAGCAGATGACTGCT
49332578 AACATGACAT
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
46 36 0.57
47 27 0.43
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (47 bp):
TGGATGAACCATTAGTCGAGCAGATGACTGCTGACTAAAATATGTGG
Found at i:49337198 original size:7 final size:7
Alignment explanation
Indices: 49337186--49337241 Score: 112
Period size: 7 Copynumber: 8.0 Consensus size: 7
49337176 TAAATATTTT
49337186 TTAATTA
1 TTAATTA
49337193 TTAATTA
1 TTAATTA
49337200 TTAATTA
1 TTAATTA
49337207 TTAATTA
1 TTAATTA
49337214 TTAATTA
1 TTAATTA
49337221 TTAATTA
1 TTAATTA
49337228 TTAATTA
1 TTAATTA
49337235 TTAATTA
1 TTAATTA
49337242 ATAAATACAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAATTA
Found at i:49340226 original size:56 final size:60
Alignment explanation
Indices: 49340133--49340251 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 60
49340123 ATTTTTTATT
**
49340133 TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACATTA-TTACTAAGTTAGTATC
1 TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
** * *
49340192 TAAG-TTTTTTTTA-T-CAATTTGATACTTGAACTTGACAAAATTTCCTAATTTAGTATC
1 TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
49340249 TAA
1 TAA
49340252 ACTTGTCAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 22 0.42
57 18 0.34
58 9 0.17
59 4 0.08
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (60 bp):
TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
Found at i:49341316 original size:16 final size:17
Alignment explanation
Indices: 49341282--49341315 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
49341272 TAATGCAAGT
49341282 ATGGATTCGAAATTAAA
1 ATGGATTCGAAATTAAA
49341299 ATGGATTC-AAATCTAAA
1 ATGGATTCGAAAT-TAAA
49341316 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (17 bp):
ATGGATTCGAAATTAAA
Found at i:49342619 original size:23 final size:23
Alignment explanation
Indices: 49342595--49342639 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
49342585 TGAAAAACAT
49342595 ATATTTTTT-A-ATTATTTTAAA
1 ATATTTTTTAATATTATTTTAAA
*
49342616 ATATTTTTTAATATTTTTTTAAA
1 ATATTTTTTAATATTATTTTAAA
49342639 A
1 A
49342640 AAATAGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATTTTTTAATATTATTTTAAA
Found at i:49342633 original size:10 final size:10
Alignment explanation
Indices: 49342595--49342634 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
49342585 TGAAAAACAT
49342595 ATATTTTTTA
1 ATATTTTTTA
**
49342605 ATTATTTTAAA
1 A-TATTTTTTA
49342616 ATATTTTTTA
1 ATATTTTTTA
49342626 ATATTTTTT
1 ATATTTTTT
49342635 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTTTA
Found at i:49352319 original size:31 final size:31
Alignment explanation
Indices: 49352284--49352350 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
49352274 TTTTTTTTCC
49352284 ATATACACAACAATATAACTAAAATTAATAA
1 ATATACACAACAATATAACTAAAATTAATAA
49352315 ATATACACAACAATATAACTAAAATTAATAA
1 ATATACACAACAATATAACTAAAATTAATAA
49352346 ATATA
1 ATATA
49352351 TTTTTTCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (31 bp):
ATATACACAACAATATAACTAAAATTAATAA
Found at i:49353710 original size:61 final size:61
Alignment explanation
Indices: 49353583--49353747 Score: 154
Period size: 61 Copynumber: 2.7 Consensus size: 61
49353573 AATAAGTAGA
* * * * ** * * *
49353583 GAAATCAGAGTTTGAAAATACCTAATGGGTGAAACCAAAACTTTTGGAAGTGAATTTGAGT
1 GAAACCAGAATTTGAAAATACCTAATGGGCGAAACTAAAACTTTTAAAAATGAACTGGAGT
* * *
49353644 AAAACCAGAATTTGAAAATACCTATTGGGCGAAACTATAACTTTTAAAAATGAACCTGGAG-
1 GAAACCAGAATTTGAAAATACCTAATGGGCGAAACTAAAACTTTTAAAAATGAA-CTGGAGT
* * * *
49353705 GAAACCA-AAGTTTGAAAATACTTACTAGGCGAAACTAGAACTT
1 GAAACCAGAA-TTTGAAAATACCTAATGGGCGAAACTAAAACTT
49353748 GTGACATGAG
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
60 2 0.02
61 79 0.93
62 4 0.05
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.25
Consensus pattern (61 bp):
GAAACCAGAATTTGAAAATACCTAATGGGCGAAACTAAAACTTTTAAAAATGAACTGGAGT
Found at i:49354681 original size:20 final size:20
Alignment explanation
Indices: 49354656--49354706 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
49354646 ATCAATTATT
*
49354656 TATAAAATTTAATTTAAATA
1 TATAAAATATAATTTAAATA
* *
49354676 TATAAACTATATTTTAAATA
1 TATAAAATATAATTTAAATA
49354696 T-TAAAATATAA
1 TATAAAATATAA
49354707 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:49354949 original size:13 final size:13
Alignment explanation
Indices: 49354931--49354994 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
49354921 AGTTTGGCAA
49354931 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
49354944 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
49354957 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
49354970 TGCTTTTGAGAAC
1 TGCTTTTGAAAAG
*
49354983 TACTTTTGAAAA
1 TGCTTTTGAAAA
49354995 ATTTGAGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:49355902 original size:34 final size:35
Alignment explanation
Indices: 49355856--49355925 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
49355846 TTTGTATTAA
*
49355856 AATTTCTATAAAATTTCTGT-AAAATCAATCAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
*
49355890 AATTTCTGTAAAATTTCTGTAAAAATCAAACAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
49355925 A
1 A
49355926 GAAAACAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 19 0.58
35 14 0.42
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (35 bp):
AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
Found at i:49361892 original size:3 final size:3
Alignment explanation
Indices: 49361886--49361931 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
49361876 TAAACTAATC
49361886 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
49361932 CACCATCATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:49367650 original size:89 final size:89
Alignment explanation
Indices: 49366770--49367640 Score: 870
Period size: 89 Copynumber: 9.8 Consensus size: 89
49366760 GTCATCATAT
* *
49366770 CCAGCCTGACCTCCCTGAGTTTGTAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
** * * *
49366835 CAGTAACGAAGCAGACCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
49366859 CCAGCCTGACTTCCCTAAGTTTGTAGCGGAGTAGACTGAAGATAGCAGATATTATCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
*
49366924 TGTCAGCGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * *
49366948 CTAGTCTTG-CCTCCCTGAATTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTTTCTGTA
1 CCAG-CCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
* * * * *
49367012 CCGACAGTGAAGTAGATCGAAGATA
65 CTGGCAGCGAAGCAGATCGAAGACA
* * * * * * * *
49367037 CCAGCCTGACATCCTTGAGTTTGCAACGGAGTAGACTGAAGATAGCAAATCTTATCTTCCGGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
*
49367102 TGGCAGCGAAGCAGATTGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * *** * * * * * *
49367126 CCAGCCTCACTTTATTGAGTTTACAGCAGAGCATACTAAAGATAGCAGATTTTGTCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* * *
49367191 TGGCAGCAAAACAGATCAAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
49367215 CCAGCCTCG-TCTCCCT-ATATTTGCGGCGGAGCAGACTGAAGATTGTAGATCTTGTATTCCGGT
1 CCAGCCT-GACCTCCCTGA-GTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGT
* * *
49367278 ACTAGCAGCAAACCAGATCGAAGACA
64 ACTGGCAGCGAAGCAGATCGAAGACA
* * * * * * * *
49367304 CCAGCCTGACCTCCCTGAATTTGTAGTGAAGTAGACTGAAGATAGTAGATCTTGTATTCTTGTAA
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGT-A
49367369 C-GGCAGCGAAGCAGATCGAAGACA
65 CTGGCAGCGAAGCAGATCGAAGACA
* * * * *
49367393 CTAGCCTGACCTCCTTGAGTTTGCAGTGGAGCAGACTGAAGATAGCACATCTTGTCTTTCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
* * * *
49367458 CGACAGTGAAGCAAATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * *
49367482 CTAGCCTGACCTCCCTGAATTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTGTCTTTCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
*
49367547 TGGCAGCGAAGTAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * *
49367571 CCAGCCTTG-CCTCCCTGATTTTGCAGCGGAGCAGACTGAAGATTGTATATCTCGTCTTCCTATA
1 CCAGCC-TGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
49367635 CTGGCA
65 CTGGCA
49367641 TTGAAGTAGA
Statistics
Matches: 638, Mismatches: 135, Indels: 18
0.81 0.17 0.02
Matches are distributed among these distances:
88 7 0.01
89 623 0.98
90 8 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (89 bp):
CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAC
TGGCAGCGAAGCAGATCGAAGACA
Found at i:49367660 original size:267 final size:266
Alignment explanation
Indices: 49366770--49367663 Score: 968
Period size: 267 Copynumber: 3.3 Consensus size: 266
49366760 GTCATCATAT
*
49366770 CCAGCCTGACCTCCCTGAGTTTGTAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
** * * * * * * *
49366835 CAGTAACGAAGCAGACCGAAGACACCAGCCTGACTTCCCTAAGTTTGTAGCGGAGTAGACTGAAG
66 TGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
* * *
49366900 ATAGCAGATATTATCTTCCTGTATTGTCAGCGAAGCAGATCGAAGACACTAGTCTTGCCTCCCTG
131 ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAG-CCTGCCTCCCTG
* * * *
49366965 AATTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTTTCTGTACCGACAGTGAAGTAGATC
195 AATTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATC
*
49367030 GAAGATA
260 GAAGACA
* * * * * * * * *
49367037 CCAGCCTGACATCCTTGAGTTTGCAACGGAGTAGACTGAAGATAGCAAATCTTATCTTCCGGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
* * ** * * * *
49367102 TGGCAGCGAAGCAGATTGAAGACACCAGCCTCACTTTATTGAGTTTACAGCAGAGCATACTAAAG
66 TGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
* * * * * * *
49367167 ATAGCAGATTTTGTCTTCCTGTATTGGCAGCAAAACAGATCAAAGACACCAGCCTCGTCTCCCT-
131 ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCT-GCCTCCCTG
* * * * * * * * **
49367231 ATATTTGCGGCGGAGCAGACTGAAGATTGTAGATCTTGTATTCCGGTACTAGCAGCAAACCAGAT
195 A-ATTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGAT
49367296 CGAAGACA
259 CGAAGACA
* * * * * * *
49367304 CCAGCCTGACCTCCCTGAATTTGTAGTGAAGTAGACTGAAGATAGTAGATCTTGTATTCTTGTAA
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGT-A
* * *
49367369 C-GGCAGCGAAGCAGA-TCGAAGACACTAGCCTGACCTCCTTGAGTTTGCAGTGGAGCAGACTGA
65 CTGGCAGCGAAGCAGACT-GAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGA
* * * ** * *
49367432 AGATAGCACATCTTGTCTTTCTGTACCGACAGTGAAGCAAATCGAAGACACTAGCCTGACCTCCC
129 AGATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCTG-CCTCCC
* * *
49367497 TGAATTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCGAAGTAGA
193 TGAATTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGA
49367562 TCGAAGACA
258 TCGAAGACA
* * * * *
49367571 CCAGCCTTG-CCTCCCTGATTTTGCAGCGGAGCAGACTGAAGATTGTATATCTCGTCTTCCTATA
1 CCAGCC-TGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTA
** * *
49367635 CTGGCATTGAAGTAGACTAAAGACACCAG
65 CTGGCAGCGAAGCAGACTGAAGACACCAG
49367664 TCCTATCTCT
Statistics
Matches: 501, Mismatches: 117, Indels: 18
0.79 0.18 0.03
Matches are distributed among these distances:
266 7 0.01
267 489 0.98
268 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (266 bp):
CCAGCCTGACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
TGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCTGCCTCCCTGA
ATTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATCG
AAGACA
Found at i:49367866 original size:100 final size:100
Alignment explanation
Indices: 49367692--49368623 Score: 1109
Period size: 100 Copynumber: 9.3 Consensus size: 100
49367682 ATAGTGGAAT
* * * * * *
49367692 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
49367757 CAGCGAATCTTACTTCCTCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * * * *
49367792 AGATTGAAATCACAACGGCGAATCTTACTTTCCTTGCGGTACAGTGGACCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** ** *
49367857 TGGCAAATCTTGCTTCCCAAACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * ** * **
49367892 AGATTGAAGGTACAACGGTGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC-ACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
**
49367956 CGGTGAATCTTATTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
49367991 AGATTGAAGCCACAACAGCGAATCATACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
49368056 CGGCGAATCTGGC-TCTCCCAACATTGCAATTAAAA
66 CGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAA
* *
49368091 AGATTGAAGCCACAACGGCGAATCCTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
49368156 CGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
49368191 AGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * * *
49368256 TAGCGAATCTTGC-TCCACAACATTGCAAATAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * ** *
49368290 AGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGCTATAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
49368355 TGGTGAATCTTGCTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** * *
49368390 AGATTGAAGCCACAACAGTTAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
49368455 CGGTGAAT-TATGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCT-TGCTTCCCCGACATTGCAATTAAAA
* * * * *
49368490 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
49368555 CGGTGAATCTGGC-TCCCCTGACATTGCAATTAGAA
66 CGGTGAATCTTGCTTCCCC-GACATTGCAATTAAAA
* *
49368590 AGTTTGAAGCCACAACGGCGAATCTTATTTCCCT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT
49368624 AACATTGCAA
Statistics
Matches: 703, Mismatches: 122, Indels: 14
0.84 0.15 0.02
Matches are distributed among these distances:
99 169 0.24
100 531 0.76
101 3 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:49368281 original size:299 final size:296
Alignment explanation
Indices: 49367692--49368623 Score: 1164
Period size: 299 Copynumber: 3.1 Consensus size: 296
49367682 ATAGTGGAAT
* * ** * *
49367692 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTG-TGGTGTAGTGGAGCAGATTGAAGCTACAA
* * **
49367757 CAGCGAATCTTACTTCCTCGACATTGCAATTAAAAAGATTGAAATCACAACGGCGAATCTTACTT
65 CGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * ** * ** *
49367822 TCCTTGCGGTACAGTGGACCAGATTGAAGCTACAATGGCAAATCTTGCTTCCCAAACATTGTAAT
129 CCCTAGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
** ** * **
49367887 TAAAAAGATTGAAGGTACAACGGTGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
**
49367952 ACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAA
259 ACAACGGTGAATCTT-GCTCCCCGACATTGCAATTAAAA
* * *
49367991 AGATTGAAGCCACAACAGCGAATCATACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT-GTGGTGTAGTGGAGCAGATTGAAGCTACAA
* * *
49368056 CGGCGAATCTGGCTCTCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCCTACTT
65 CGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
*
49368121 CCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
129 CCCTAGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT
* ** * *
49368186 TAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * * * *
49368251 TACAATAGCGAATCTTGCTCCACAACATTGCAAATAAAA
259 -ACAACGGTGAATCTTGCTCCCCGACATTGCAATTAAAA
* * * *
49368290 AGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGCTATAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGT-GGTGTAGTGGAGCAGATTGAAGCTACAA
* * * * **
49368355 TGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTTAATCTTACTT
65 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* *
49368420 CCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTGAAT-TATGTTTCCCCGACATTGCAA
129 CCCTAGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCT-TGTTTCCCCGACATTGCAA
* * *
49368484 TTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAG
193 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* *
49368549 CGACAACGGTGAATCTGGCTCCCCTGACATTGCAATTAGAA
258 C-ACAACGGTGAATCTTGCTCCCC-GACATTGCAATTAAAA
* *
49368590 AGTTTGAAGCCACAACGGCGAATCTTATTTCCCT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT
49368624 AACATTGCAA
Statistics
Matches: 540, Mismatches: 86, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
298 4 0.01
299 477 0.88
300 59 0.11
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (296 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGTGGTGTAGTGGAGCAGATTGAAGCTACAAC
GGCGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
CTAGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTA
AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCAC
AACGGTGAATCTTGCTCCCCGACATTGCAATTAAAA
Found at i:49368663 original size:100 final size:99
Alignment explanation
Indices: 49368488--49377357 Score: 5189
Period size: 100 Copynumber: 88.8 Consensus size: 99
49368478 TTGCAATTAA
* * * * ** ** ** *
49368488 AAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGAC
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
* * ** * ** * *
49368553 AACGGTGAATCTGGCTCCCCTGACATTGCAATTAG
66 AATGGCGAATCTTACTTCCCTGACGGTGC-AGTGG
* * * * **
49368588 AAAGTTTGAAGCCACAACGGCGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCAC
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
* * * *
49368653 AATAGCGAATCTTACTTCTCTGGCGGTACAGTGG
66 AATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49368687 AATAGATTGAAGCTACAACAGCGAATCTTAC-TCCACGACATTGTAGTTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * * *
49368751 CAACGACGAATCTTACTTCCCTGGCAGTGTAGGGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** * * *
49368786 AGCAGATTGAAGCCACAACGATGAATCTTGTTTCTCGGACATTGCAATTAAAAAGATTAAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
49368851 CAATGGCGAATCTTACTTCCCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *** * * *
49368886 AACAAATTGAAGCTACAACGGCGAATCTTGCATCCAAAACATTGTAAATAAAAAGATTGAAGCTA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *
49368951 CAATGGAGAATCTTACTTCCCTAGA-GGAGCAGTGG
65 CAATGGCGAATCTTACTTCCCT-GACGGTGCAGTGG
* * **
49368986 AATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACCGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
**
49369051 CAATGGCGAATCTTACTTCCCT-ACCAATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *** * *
49369086 AGTAGATTGAATCTACAATGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAATATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* **
49369151 CAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** *
49369186 AACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGACATTGCAATTAAAAATATT-AAGGCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAA-GCC
* *
49369250 ACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49369286 CACAA-ATTGAAGCTACAACAGCGAATCTTAC-TCCACAATATTGCAATTAAAAAGATTGAAGCC
1 -A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
* ** * *
49369349 ACAATGGCAAATCTTACTTTTCTGTCGGTACAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49369385 AGCAGATTGAAGCTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** *
49369450 CAACAGCGAATCTTACTTCCCTCG-CGGTGCAGTAG
65 CAATGGCGAATCTTACTTCCCT-GACGGTGCAGTGG
* * * **
49369485 AACAGATTGAAGCCACAACGGGGAATCATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** * *
49369550 CAACAGCAAATCTTACTTCCCT-AGCGGTGCAATGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* ** * * *
49369585 AGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * **
49369650 CAACGGCGAATCTTACTTCTCTGACAATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * **
49369685 AACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49369750 CAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
*** * * * *
49369785 AATAGATTGAAGCTACAACAACGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49369849 CAACGGCGAATCTTACTTCCCT-AGTGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * *
49369884 AGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49369949 CAAAGGTGAATCTTACTTCCCTG-GGAGTGTAATGG
65 CAATGGCGAATCTTACTTCCCTGACG-GTGCAGTGG
* * * * ** * * *
49369984 AACAAATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACATTGTAATTTAAAAGATTGAAG-T
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAGATTGAAGCC
* * ** *
49370047 ACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * * * *
49370083 AACAGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTTCAATTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * **
49370148 CAACGGTGAATCTTACTTTTCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * ** * **
49370183 AGCAA-ATTGAAGCTACAACGGCGAACCTGGC-TCCCCTTACATTATAATTAAAAAGATTGAAGC
1 A--AAGATTGAAGCTACAACGGTGAATCTTACTTCCCC-GACATTGCAATTAAAAAGATTGAAGC
*
49370246 CACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
63 CACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * ** *
49370283 AACAGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49370348 CAATGGTGAATCTTACTTCCCTGGCGGTACAGTGA
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * *
49370383 AACAAATTGCAA-CAACAACGGTGAATC-AAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGC
1 AA-AGATTG-AAGCTACAACGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGC
* * *
49370446 CACAATAGCGAATCTTACTTCCCTGGCGGTGCAATGG
63 CACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * * *
49370483 AGCAGATTGAAGCTACAACATTGAATC-TAGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCC
1 A-AAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
** * *
49370547 ACAACAGCGAATCTTACTTCCCTGATGGTGCAGTGA
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** *
49370583 AACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49370648 CAATAGCGAATCTTACTTCTCTGGCGGTACAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49370683 AATAGATTGAAGCTACAACAGCGAATCTTAC-TCCACGACATTGTAGTTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49370747 CAACGACGAATCTTACTTCCCTGGCGGTGTAGGGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** * * * * *
49370782 AGCAGATTGAAGCTACAACGATGAATCCTGTTTCTCGGACATTGCAATTAAAAATATTAAAGTCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
49370847 CAATGGCGAATCTTACTTCCCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *** * *
49370882 AACAAATTGAAGCTACAAAGGTGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *
49370947 CAATGGAGAATCTTACTTCCCT-AGCGGAGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *
49370982 AATAGATTCAAGCTACAACGGTGAATCTAATTTCTCCGACACTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* **
49371047 CAATAGCGAATCTTACTTCCCT-ACCAATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *** *
49371082 AGTAGATTGAATCTACAACAGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* **
49371147 CAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * **
49371182 AACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAA-GCC
* *
49371246 ACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49371282 CACAA-ATTGAAGCTACAACAGCGAATCTTAC-TCCACAATATTGCAATTAAAAAGATTGAAGCC
1 -A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
* * * * *
49371345 ATAATGGCAAATCTTACTTCTCTGTCGGTACAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49371381 AGCAA-ATTGAAGCTATAATGGTGAATCTTGCTTCCCCGACATTGTAAGTAAAAAGATTGAAGCC
1 A--AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
** ** *
49371445 ACAACAGCGAATCTTACTTCCCTGGTGGTGCAGTAG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * * ** *
49371481 AACAGATTGACGCCACAATGGGGAATCATGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** * *
49371546 CAACAGCGAATCTTACTTCCCT-AGTGGTGCAATGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* ** * * *
49371581 AGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49371646 CAACGACGAATCTTACTTCTCTGGCGATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * ** *
49371681 AACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAAAATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49371746 CAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
*** * * * *
49371781 AATAGATTGAAGCTACAACAACGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49371845 CAACGGCGAATCTTACTTCCCT-AGTGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *
49371880 AGCAGATTGAAGCTACAACAGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49371945 CAATGGTGAATCTTACTTCCCTTG--GAGTGTAATGG
65 CAATGGCGAATCTTACTTCCC-TGACG-GTGCAGTGG
* * * * ** *
49371980 AACAAATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACATTGTAATTCAAAAA-ATTGAAG-
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATT-AAAAAGATTGAAGC
* * * ** * *
49372042 TACAACGGTGAATCTTACTTCCCTGGTGGCGCACTGG
63 CACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * * *
49372079 AACAGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTGCAATTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* **
49372144 CAACGGCGAATCTTACTTTTCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * ** * ** *
49372179 AGCAA-ATTAAAGCTACAACGGCGAATCTGGCTCCCCCGACATTATAATTAAAAAGATTGAAGCT
1 A--AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
* * * *
49372243 AGAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * ** *
49372279 AACAGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49372344 CAATGGCGAGTCTTACTTCCCTGGCGGTACAGTGA
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * *
49372379 AACAAATTGAAGCAACAACGGTGAATC-AAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
** * *
49372443 ACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** ** * * * *
49372479 AGCAGATTGAAGCTACAACATTGAATCTGGCTCCCCCTACATTGCAATTAAAAAGTTTGCAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
**
49372544 CAACAGCGAATCTTACTTCCCTGACGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** * *
49372579 AACAGATTGAAACTACAACGGT-AATCTTATTTCTCTAACATTCCAATTAAAAAGATCGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49372643 CAATAGCGAAACTTACTTCTCTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
*** * *
49372678 AATAGATTGAAGCTACAACAACGAATCTTAC-TCCACGACATTGCAGTTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49372742 CAACGACGAATCTTACTTCCCTGGCGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * ** * * * *
49372777 AGCAGATTGAAGCTACAACGATGAATCTTGTTTCTCGGATATTGCAATTAAAAAGATTAAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
49372842 CAATGGCGAATCTTACTTCCCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * * *** * *
49372877 AACAAATTGAAGCTACAACGGCGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49372942 CAATGGAGAATCTTACTTCCCT-AGCGGCGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *
49372977 AATAGATTCAAGCTACAACGGTGAATCTTATTTTCCCGACACTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
**
49373042 CAATGGCGAATCTTACTTCCCT-ACCAATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *
49373077 AGTAGATTGAATCTACAACGGCGAATCTGAC-TCCCTCGACATTGCAATTAAAAAGATTGAAGCC
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAGATTGAAGCC
** *
49373141 ACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * ** *
49373177 AACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGACT-AAGGCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAA-GCC
****** * * *
49373241 ACAAT--C-AA--TTAAAAAGATTAAGG-CCA-T--
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * ** ** * ** * * * *
49373268 AATG-GCGAATCTTACTTCCCTGGCAATAC--AGTGGCAC-AAATTG-AAGCTACAACAGCGAAT
1 AAAGATTGAAGC-TACAACGGT-G-AAT-CTTACTTCCCCGACATTGCAA-TTA-AA-A-AG-A-
** * * ****** * * *** **
49373328 CTTG-CTCCACAATATTGC-AAT-TAAAAAGATTAAAGCCACAACGG
56 -TTGAAGCCAC-A-ATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * * * * **** * * * * *
49373372 CAA-ATCT-TA-CTTC-CCTGTCG-GTAC--AGTGGAGC-AGATTG-AAGTTATAATG-GTGAAT
1 AAAGAT-TGAAGCTACAACGGT-GAAT-CTTACTTCCCCGACATTGCAA-TTAAAAAGATTGAAG
** * ** * *** * * * **
49373427 CTTGC-TTCCCCGACAT-TGTAATT--AAAAAGATTGAAG-CC
62 C-CACAAT-GGCGA-ATCT-TACTTCCCTGACG-GTGCAGTGG
* ** * ** ** * * **** * * ** *
49373465 ACAATAGCGAATCTTACTTCCCTGGCAGTGC--AGTAGAAC-AGATTG-AAGCTACAACGGGGAA
1 A-AAGATTGAAGC-TACAACGGT-G-AAT-CTTACTTCCCCGACATTGCAA-TTA-AA--AAGAT
* * * * ****** * *** **
49373526 TCAAGTTTCCCCGACATTGC-AAT-TAAAAAGATTGAAGCCACAACAGCG
57 TGAAG---CCAC-A-ATGGCGAATCTTACTTCCCTGACGGTGC-AGTG-G
** ** * * * * ** ** * * *******
49373574 AATCTTACTTCCCTAGCGGTGCAATGGAGCAGAT-TGA-AGCTACAACAGTG-AATCTGGCTCCC
1 AA--AGA-TT--GAAGC--TACAACGGTG-A-ATCTTACTTCCCCGACATTGCAAT-TAAAAAGA
** *** **** * * * **
49373636 CCGACA-TTGCAATTAAAAAGT-TTGA-TGCCAC-AACGGTG-AATCTT
56 TTGA-AGCCACAATGGCGAA-TCTT-ACTTCC-CTGACGGTGCAGT-GG
**** * ** * ** *** * * *** *
49373680 ACTTCTCTGGCGATGCAGTGGAACAA-ATTGAAGC-TACAACGGTGA-ATCT-TATTTCCCTAAC
1 AAAGAT-T---GAAGC--T---ACAACGGTGAATCTTACTTCCCCGACAT-TGCAATT-AAAAAG
*** * * * * * * *
49373741 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTACAGTGG
55 ATTG-AA-GCCACA-A-TG--G---------CGAATCTTACTTCCCTGACGGTGCAGTGG
*** * * * *
49373801 AATAGATTGAAGCTACAACAACGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49373865 CAACGGCGAATCTTACTTCCCT-AGTGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *
49373900 AGTAGATTGAAGCTACAACGGTGAATCTTATTTCCTCGACATTACAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *
49373965 CAATGGTGAATCTTACTTCCCTG--GGAATGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGG--TGCAGTGG
* * * ** * * *
49374000 AACAAATTGAAGCTACAACGGTGAATCTTGC-ACCCTAAACATTGTAATTCAAAAGATTGAAGCT
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAGATTGAAGCC
* * *
49374064 ACAACGGTGAATCTTACTTCCCT-AGCGGCGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* ** * * *
49374100 AACAGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTGCAATTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* ** *
49374165 CAACGGCGAATCTTACTTTTCT-AGCGGTGCAGCGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* ** * *
49374200 AGTAA-ATTGAAGCTACAACGGCGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAGCC
1 A--AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
* *
49374264 ACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** *
49374300 AACAGGTTGAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49374365 CAATGGTGAATCTTACTTCCCTGGCGGTACAGTGA
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * **
49374400 AACAAATTGAAGCAACAACGGTGAATCATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** * *
49374465 CAACAGCGAATCTTACTTCCCTGGCGGTGCAATGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** ** * * *
49374500 AGCAGATTGAAGCTACAATAGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** *
49374565 CAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** * *
49374600 AACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAAAGATCGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49374665 TAATTGCGAATCTTACTTCTCTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
** * * * *
49374700 AATAGATTGAAGCTACAATAGCGAATCTTAC-TCCACGACATTGCAGTTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49374764 CAATGACGAATCTTACTTCCCTGGCGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * * * * *
49374799 AGCAGATTGAAGCTACAACAATGAATCTTATTTCTCGGACATTGCAATTAAAAATATTAAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
49374864 CAATGGCGAATCTTACTTCCCT-AGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *** * *
49374899 AACAAATTGAAGCTACAACGGCGAATCTT-GTATCCAAAACATTGTAATTAAAAAGATTGAAGCT
1 AA-AGATTGAAGCTACAACGGTGAATCTTACT-TCCCCGACATTGCAATTAAAAAGATTGAAGCC
* * *
49374963 ACAATGGAGAATCTTAGTTCCCT-AGCGGCGCAGTGG
64 ACAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * *
49374999 AATAGATTCAAGCGACAACGGTGAATCTTATTTCCCCGACACTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
**
49375064 CAATGGCGAATCTTACTTCCCT-ACCAATGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * * ** ** *
49375099 AGTAGATTGAATCTACGACGACGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49375164 CAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * **
49375199 AACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCC
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAA-GCC
* * * *
49375263 ACAATGGTGAATCTTACTTCCCTGGCAGTGTAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * * * *
49375299 CACAA-ATTGAAGCTACAACAGCGAATCTTGC-TCCACAATATTGCAATTAAAAAAATTGAAGCC
1 -A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
* * * *
49375362 ACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * ** *
49375398 AGCAGATTGAAGTTATAATGGTGAATCTTGGTTCCCCGACATTGTAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** * * *
49375463 CAACAGCGAATCTTACTTCGCTGGCGGTGCAGTAG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * **
49375498 AACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
** * * *
49375563 CAACAGCGAATCTTACTTCCCTGGCGGTCCAATGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * *
49375598 AGCAGATTGAAGCTACAACGGTGAATC-TAGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGCC
1 A-AAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGCC
** * * * * *
49375662 ACAACAGCAAATCGTACTTCCCTGGCGATGAAGTGG
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * **
49375698 AACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * * *
49375763 CAATAGAGAATCTTACTTCTCTGGCGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
** * * * **
49375798 AATAGATTGAAGCTACAACAATGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTTA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49375862 CAACGGCGAATCTTACTTCCCT-AGTGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGA-CGGTGCAGTGG
* * *
49375897 AGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *** *
49375962 CAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * * * ** * ** *
49375997 AACAAATTGAAGGTACAACAGCGAATCTTGC-ACCCTAAATATTTTAATTAAAAAGATTGAAGCT
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTAAAAAGATTGAAGCC
* * * * * **
49376061 ACAACGG-TAA--ATA--T---T----GT-AATTAA
64 ACAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* *** * * ** * *** * *
49376084 AAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAGATTGAAGCTAC
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
* * ** ** * **
49376149 AACGGTGAATCTTGTTTCCCTGACATTGCAATTA
66 AATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * * **** ** *** *
49376183 AAATGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGTGGTGCAATGGAGCTGATTGAAGCTA
1 AAA-GATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* ** ** * * ** * **
49376248 CAACGATGAATCTGGCTCCCCCGACCTTGCAATTAA
65 CAATGGCGAATCTTACTTCCCTGACGGTGC-AGTGG
* * * * * ** * * ** ** *
49376284 AAAGATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTAC
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
* * ** ** * * **
49376349 AACGGTGAATCTTGTTTCCCTGACATTGTAATTAA
66 AATGGCGAATCTTACTTCCCTGACGGTG-CAGTGG
* * * * * * * ** * ** *
49376384 AAATATTGAAGCCACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAA-CCTA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC-A
* * ** * * **
49376448 CAATGGCAAATCTTGC-TCCAC-GACATTGTAATTAA
65 CAATGGCGAATCTTACTTCC-CTGACGGTG-CAGTGG
** * * ** * * ** ** * *
49376483 AAAGATTGAAGAC-ACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTA
1 AAAGATTGAAG-CTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *** * ** * * **
49376547 TAACGGCGAATCTGGTTTCCCCGACATTTCAATTAA
65 CAATGGCGAATCTTACTTCCCTGACGGTGC-AGTGG
* ** ** * ** * *
49376583 AAAGATTGAAGCTACAACTGTGAATCTTACTT-CCTTAGCGGTGCAGTGGAACAGATTGAAGCTA
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTAAAAAGATTGAAGCCA
* ** ** ** * * **
49376647 CAATGGTGAATCTTGTTTCCCCAACATTGTAATTAA
65 CAATGGCGAATCTTACTTCCCTGACGGTG-CAGTGG
* * ** * *
49376683 AAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAGCCAC
1 AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
* ** * * *
49376748 AACGATGAATCTTACATCTCTGGCGGTGCAGTGG
66 AATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
** * *
49376782 AACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* ** * * *
49376847 CAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * *
49376882 AACAGATTGAAGCTACAATGGTGAATCTTGCTT-CACGACATTGCAATTAAAAATATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * * *
49376946 CAACGGCGAATCTTATTTCCCTGGCGGTGTAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * *
49376981 AGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCCA
1 A-AAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49377046 CAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * * *
49377081 AATAGATTGAAACTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *
49377146 CAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
65 CAATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* * * ** *
49377181 AATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATT-AAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* * *
49377245 CAACT-GTGAATCTTACTTCCTTGGCGGTGCAGTGG
65 CAA-TGGCGAATCTTACTTCCCTGACGGTGCAGTGG
* ** * *
49377280 AACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCCGACATTGTAATTAAAAAGATTGAAGCCA
1 AA-AGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCA
* *
49377345 CAACGGTGAATCT
65 CAATGGCGAATCT
49377358 GGCTCCCCCG
Statistics
Matches: 6922, Mismatches: 1560, Indels: 576
0.76 0.17 0.06
Matches are distributed among these distances:
86 45 0.01
87 9 0.00
88 2 0.00
89 7 0.00
90 12 0.00
91 10 0.00
92 8 0.00
93 10 0.00
94 11 0.00
95 15 0.00
96 4 0.00
97 9 0.00
98 25 0.00
99 1378 0.20
100 5172 0.75
101 50 0.01
102 11 0.00
103 3 0.00
104 8 0.00
105 11 0.00
106 19 0.00
107 11 0.00
108 12 0.00
109 4 0.00
110 4 0.00
111 2 0.00
112 3 0.00
113 13 0.00
114 25 0.00
115 7 0.00
116 1 0.00
118 4 0.00
120 2 0.00
121 12 0.00
122 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (99 bp):
AAAGATTGAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
AATGGCGAATCTTACTTCCCTGACGGTGCAGTGG
Found at i:49368696 original size:200 final size:200
Alignment explanation
Indices: 49368490--49377409 Score: 5961
Period size: 200 Copynumber: 44.6 Consensus size: 200
49368480 GCAATTAAAA
* * * ** ** ** *
49368490 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * * * *
49368555 CGGTGAATCTGGCTCCCCTGACATTGCAATTAGAAAGTTTGAAGCCACAACGGCGAATCTTATTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAAGATTGAAGCTACAACGGTGAATCTTATTT
* * * *
49368620 CCCTAACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCTCTGGCGGTACAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGT
*
49368685 GGAAT
196 GGAAC
* * * *
49368690 AGATTGAAGCTACAACAGCGAATCTTAC-TCCAC-GACATTGTAGTTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * ** * * * *
49368753 ACGACGAATCTTACTTCCCTGGCAGTG-TAGGGGAGCAGATTGAAGCCACAACGATGAATCTTGT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * *
49368817 TTCTCGGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49368882 GTGGAAC
194 GTGGAAC
* * * * *** * * *
49368889 AAATTGAAGCTACAACGGCGAATCTTGCATCCAAAACATTGTAAATAAAAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
49368954 TGGAGAATCTTACTTCCCTAGA-GGAGC-AGTGGAATAGATTCAAGCTACAACGGTGAATCTTAT
66 CGGCGAATCTTACTTCCCT-GACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
* ** ** **
49369017 TTCCCCGACACCGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
**
49369082 GTGGAGT
194 GTGGAAC
* * * *** * * *
49369089 AGATTGAATCTACAATGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
*** * * * * *
49369154 CGGCGAATCTTACTTCCCTGGTGGTGC-AGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * *
49369218 TCCCCGACATTGCAATTAAAAATATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCA
130 TCCCTGACATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49369282 GTGGCAC
194 GTGGAAC
* * * * *
49369289 AAATTGAAGCTACAACAGCGAATCTTAC-TCCAC-AATATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * ** * * * * * * * **
49369352 ATGGCAAATCTTACTTTTCTGTCGGTAC-AGTGGAGCAGATTGAAGCTATAATGGTGAATCTTGC
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * ** *
49369416 TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTCGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49369481 GTAGAAC
194 GTGGAAC
* * * ** *
49369488 AGATTGAAGCCACAACGGGGAATCATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ***
49369553 CAGCAAATCTTACTTCCCT-AGCGGTGCAA-TGGAGCAGATTGAAGCTACAACGGTGAATCTGGC
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * * * * * **
49369616 TCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGGCGAATCTTACTTCTCTGACAATGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49369681 GTGGAAC
194 GTGGAAC
* * *
49369688 AAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *** **
49369753 TGGCGAATCTTCCTGCTCTGGCAGTGC-AGTGGAATAGATTGAAGCTACAACAACGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * * * *
49369816 TCCAC-GACATTGCAATTAAAAAGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTA
130 TCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49369880 GTGGAGC
194 GTGGAAC
* * *
49369887 AGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * * * **
49369952 AGGTGAATCTTACTTCCCTGGGAGTGTAA-TGGAACAAATTGAAGCTACAACGGCGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * * * * * * *
49370015 ACCCTAAACATTGTAATTTAAAAGATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCGCA
130 TCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49370079 GTGGAAC
194 GTGGAAC
* ** * * * *
49370086 AGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTTCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * * **
49370151 CGGTGAATCTTACTTTTCT-AGCGGTGC-AGTGGAGCAA-ATTGAAGCTACAACGGCGAACCTGG
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA--AAGATTGAAGCTACAACGGTGAATCTTA
* * * **
49370213 CTCCCCTTACATTATAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
49370278 AGTGGAAC
193 AGTGGAAC
* * * * **
49370286 AGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * * *
49370351 TGGTGAATCTTACTTCCCTGGCGGTAC-AGTGAAACAAATTGCAA-CAACAACGGTGAATC-AAG
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTG-AAGCTACAACGGTGAATCTTA-
* *
49370413 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCTGGCGGTGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
* *
49370478 AATGGAGC
193 AGTGGAAC
** * * * *
49370486 AGATTGAAGCTACAACATTGAATC-TAGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* ** * * *
49370550 ACAGCGAATCTTACTTCCCTGATGGTGC-AGTGAAACAGATTGAAACTACAACGGTGAATCTTAT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
* * * * * *
49370614 TTCTCTAACATTCCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCTCTGGCGGTACA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49370679 GTGGAAT
194 GTGGAAC
* * * *
49370686 AGATTGAAGCTACAACAGCGAATCTTAC-TCCAC-GACATTGTAGTTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * ** * * * *
49370749 ACGACGAATCTTACTTCCCTGGCGGTG-TAGGGGAGCAGATTGAAGCTACAACGATGAATCCTGT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * * * *
49370813 TTCTCGGACATTGCAATTAAAAATATTAAAGTCACAATGGCGAATCTTACTTCCCTAGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49370878 GTGGAAC
194 GTGGAAC
* * * * *** * *
49370885 AAATTGAAGCTACAAAGGTGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *
49370950 TGGAGAATCTTACTTCCCT-AGCGGAGC-AGTGGAATAGATTCAAGCTACAACGGTGAATCTAAT
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
* * ** **
49371013 TTCTCC-GACACTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCTACCAATGC
129 TTC-CCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
**
49371077 AGTGGAGT
193 AGTGGAAC
* * * *** * *
49371085 AGATTGAATCTACAACAGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
*** * * * * *
49371150 CGGCGAATCTTACTTCCCTGGTGGTGC-AGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* *
49371214 TCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCA
130 TCCCTGACATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49371278 GTGGCAC
194 GTGGAAC
* * * * * *
49371285 AAATTGAAGCTACAACAGCGAATCTTAC-TCCAC-AATATTGCAATTAAAAAGATTGAAGCCATA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * * * *
49371348 ATGGCAAATCTTACTTCTCTGTCGGTAC-AGTGGAGCAA-ATTGAAGCTATAATGGTGAATCTTG
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA--AAGATTGAAGCTACAACGGTGAATCTTA
* * * * ** *
49371411 CTTCCCCGACATTGTAAGTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
*
49371476 AGTAGAAC
193 AGTGGAAC
* * * * * ** **
49371484 AGATTGACGCCACAATGGGGAATCATGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * ***
49371549 CAGCGAATCTTACTTCCCT-AGTGGTGCAA-TGGAGCAGATTGAAGCTACAACGGTGAATCTGGC
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * * * * * *
49371612 TCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGACGAATCTTACTTCTCTGGCGATGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49371677 GTGGAAC
194 GTGGAAC
* * * *
49371684 AAATTGAAGCTACAACGGTGAATCTTATTTCCCTAAAATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *** **
49371749 TGGCGAATCTTCCTGCTCTGGCAGTGC-AGTGGAATAGATTGAAGCTACAACAACGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * * * *
49371812 TCCAC-GACATTGCAATTAAAAAGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTA
130 TCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49371876 GTGGAGC
194 GTGGAAC
* * * *
49371883 AGATTGAAGCTACAACAGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *
49371948 TGGTGAATCTTACTTCCCTTG-GAGTGTAA-TGGAACAAATTGAAGCTACAACGGCGAATCTT-G
66 CGGCGAATCTTACTTCCC-TGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
** * * * * * * *
49372010 CACCCTAAACATTGTAATTCAAAAA-ATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCG
129 TTCCCT-GACATTGCAATT-AAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTG
*
49372073 CACTGGAAC
192 CAGTGGAAC
* ** * * *
49372082 AGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * * * **
49372147 CGGCGAATCTTACTTTTCT-AGCGGTGC-AGTGGAGCAA-ATTAAAGCTACAACGGCGAATCTGG
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA--AAGATTGAAGCTACAACGGTGAATCTTA
* * * ** * * * *
49372209 CTCCCCCGACATTATAATTAAAAAGATTGAAGCTAGAACGGCGAATCTTACTTCCCTGGCAGTGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
49372274 AGTGGAAC
193 AGTGGAAC
* * * * **
49372282 AGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * * *
49372347 TGGCGAGTCTTACTTCCCTGGCGGTAC-AGTGAAACAAATTGAAGCAACAACGGTGAATC-AAGT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTA-T
* **
49372410 TTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
* *
49372475 ATGGAGC
194 GTGGAAC
** ** * * *
49372482 AGATTGAAGCTACAACATTGAATCTGGCTCCCCCT-ACATTGCAATTAAAAAGTTTGCAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * *
49372546 ACAGCGAATCTTACTTCCCTGACGGTGC-AGTGGAACAGATTGAAACTACAACGGT-AATCTTAT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
* * * * * * *
49372609 TTCTCTAACATTCCAATTAAAAAGATCGAAGCCACAATAGCGAAACTTACTTCTCTGGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49372674 GTGGAAT
194 GTGGAAC
*** *
49372681 AGATTGAAGCTACAACAACGAATCTTAC-TCCAC-GACATTGCAGTTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * *
49372744 ACGACGAATCTTACTTCCCTGGCGGTG-TAGTGGAGCAGATTGAAGCTACAACGATGAATCTTGT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * * *
49372808 TTCTCGGATATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49372873 GTGGAAC
194 GTGGAAC
* * * * *** * *
49372880 AAATTGAAGCTACAACGGCGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
49372945 TGGAGAATCTTACTTCCCT-AGC-G-GCGTAGTGGAATAGATTCAAGCTACAACGGTGAATCTTA
66 CGGCGAATCTTACTTCCCTGA-CAGTGC-AATTGGAA-AGATTGAAGCTACAACGGTGAATCTTA
* ** **
49373007 TTTTCCC-GACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATG
128 -TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTG
**
49373071 CAGTGGAGT
192 CAGTGGAAC
* * *
49373080 AGATTGAATCTACAACGGCGAATCTGAC-TCCCTCGACATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * *
49373144 ACAGCGAATCTTACTTCCCTGGCGGTGC-AGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
* * **** ** *** *
49373208 TTCCCCGACATTGCAATTAAAAAGACT-AAGGCCACAATCAATTAAAAAGATTAAGGCCATAATG
129 TTCCCTGACATTGCAATTAAAAAGATTGAA-G-C-C-A-CAATGGCGAATCTTACTTCC---CTG
* * *
49373272 GCGAAT-CTTACTTCCCTGGCAAT
186 GCG-GTGC--A-----GTGG-AAC
* * ** * ** * ** * * **
49373295 ACAGTG--GC-ACAA-ATTGAAGC-TACAACAGC-GA-ATCTTGC--TCCACAATATTGCAA-TT
1 AGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACA--TTGCAATTAAAAAGATTG-AAGCC
* * *** * * ** * ** * * ** * * * *
49373350 AAAAAGATTAAAGC-CACAACGGCAAATCTTACTTCCCTGTCGGTACAG--TGGAGC-A-GA--T
62 ACAACG-GCGAATCTTACTTC-CCTGA-C--AGTGCAAT-T-GG-AAAGATTGAAGCTACAACGG
* * ** **** * *** * *
49373408 TGAA-GTTATAAT-GGTGA-ATCTTGC--TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACA
119 TGAATCTTAT-TTCCCTGACA--TTGCAATT-AAAAAGATTG-AA-GCCACA-A-TG--G-C-GA
** * * ** *
49373468 ATAGCGAATCTTACTTCCCTG-GCAGTGCAGTAGAAC
172 AT--CTTA-CTTCCCTGGCGGTGCAGT---G--GAAC
* * * *
49373504 AGATTGAAGCTACAACGGGGAATC-AAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * **
49373568 ACAGCGAATCTTACTTCCCT-AGCGGTGCAA-TGGAGCAGATTGAAGCTACAACAGTGAATCTGG
65 ACGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTA
* * * * * * * * *
49373631 CTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGGTGAATCTTACTTCTCTGGCGATGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
49373696 AGTGGAAC
193 AGTGGAAC
* * *
49373704 AAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * *** **
49373769 TGGCGAATCTTCCTGCTCTGGCAGTAC-AGTGGAATAGATTGAAGCTACAACAACGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * * * *
49373832 TCCAC-GACATTGCAATTAAAAAGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTA
130 TCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
**
49373896 GTGGAGT
194 GTGGAAC
* *
49373903 AGATTGAAGCTACAACGGTGAATCTTA-TTTCCTCGACATTACAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACA
* * ** * * * * *
49373967 ATGGTGAATCTTACTTCCCTGGGAATG-TAGTGGAACAAATTGAAGCTACAACGGTGAATCTT-G
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTAT
** * * * * * * * *
49374030 CACCCTAAACATTGTAATTCAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTAGCGGCGC
129 TTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
49374095 AGTGGAAC
193 AGTGGAAC
* ** * * *
49374103 AGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
** * ** * **
49374168 CGGCGAATCTTACTTTTCT-AGCGGTGC-AGCGGAGTAA-ATTGAAGCTACAACGGCGAATCTGG
66 CGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGA--AAGATTGAAGCTACAACGGTGAATCTTA
* * * * *
49374230 CTCCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
49374295 AGTGGAAC
193 AGTGGAAC
* * * **
49374303 AGGTTGAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * * * *
49374368 TGGTGAATCTTACTTCCCTGGCGGTAC-AGTGAAACAAATTGAAGCAACAACGGTGAATCATGTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* ** *
49374432 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAA
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
*
49374497 TGGAGC
195 TGGAAC
** ** * * * *
49374503 AGATTGAAGCTACAATAGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
49374568 CAGCGAATCTTACTTCCCTGGCGGTGC-AGTGGAACAGATTGAAACTACAACGGTGAATCTTATT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * * * * *
49374632 TCTCTAACATTCCAATTAAAAAGATCGAAGCCATAATTGCGAATCTTACTTCTCTGGCGGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
*
49374697 TGGAAT
195 TGGAAC
** * * *
49374703 AGATTGAAGCTACAATAGCGAATCTTAC-TCCAC-GACATTGCAGTTAAAAATATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * **
49374766 ATGACGAATCTTACTTCCCTGGCGGTG-TAGTGGAGCAGATTGAAGCTACAACAATGAATCTTAT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * * * *
49374830 TTCTCGGACATTGCAATTAAAAATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49374895 GTGGAAC
194 GTGGAAC
* * * *** * *
49374902 AAATTGAAGCTACAACGGCGAATCTT-GTATCCAAAACATTGTAATTAAAAAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * *
49374966 ATGGAGAATCTTAGTTCCCT-AGCGGCGC-AGTGGAATAGATTCAAGCGACAACGGTGAATCTTA
65 ACGGCGAATCTTACTTCCCTGA-CAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTA
* * ** **
49375029 TTTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGC
128 TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGC
**
49375094 AGTGGAGT
193 AGTGGAAC
* * ** ** * *
49375102 AGATTGAATCTACGACGACGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *
49375167 CGGTGAATCTTACTTCCCTGGCGGTGC-AGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * *
49375231 TCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGTA
130 TCCCTGACATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49375295 GTGGCAC
194 GTGGAAC
* * * * * * *
49375302 AAATTGAAGCTACAACAGCGAATCTTGC-TCCAC-AATATTGCAATTAAAAAAATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * * * **
49375365 ACGGCAAATCTTACTTCCCTGTCGGTAC-AGTGGAGCAGATTGAAGTTATAATGGTGAATCTTGG
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTAT
* * ** *
49375429 TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCGCTGGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49375494 GTAGAAC
194 GTGGAAC
* * ** *
49375501 AGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
49375566 CAGCGAATCTTACTTCCCTGGCGGTCCAA-TGGAGCAGATTGAAGCTACAACGGTGAATC-TAGC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTA-T
* * * ** * * * *
49375629 TCCCCCGACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAATCGTACTTCCCTGGCGATGAA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
49375694 GTGGAAC
194 GTGGAAC
* * *
49375701 AAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * * * * * ** **
49375766 TAGAGAATCTTACTTCTCTGGCGGTG-TAGTGGAATAGATTGAAGCTACAACAATGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* ** * * * *
49375829 TCCAC-GACATTGCAATTAAAAAGATTAAAGTTACAACGGCGAATCTTACTTCCCTAGTGGTGTA
130 TCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
*
49375893 GTGGAGC
194 GTGGAAC
* * *
49375900 AGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * * * * * * **
49375965 TGGTGAATCTTACTTCCCTGGTAGTG-TAGTGGAACAAATTGAAGGTACAACAGCGAATCTT-GC
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * ** * * * *
49376028 ACCCTAAATATTTTAATTAAAAAGATTGAAGCTACAACGG-TAA--ATA--T---T----GT--A
130 TCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
* ** *
49376079 ATTAAAA
194 GTGGAAC
* *** * ** * *** * *
49376086 AGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * * * *
49376151 CGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAATGATTGAAGCCACAACAGCGAATCTTACT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAA-GATTGAAGCTACAACGGTGAATCTTATT
* **** ** *** * * ** ** * * * ** *
49376215 TCTCTGGTGGTGCAATGGAGCTGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACCTTGCAA
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
** *
49376280 TTAAAA
195 TGGAAC
* * * * ** * * ** ** *
49376286 AGATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * ** * * * * *
49376351 CGGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAAGGGCGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAAGATTGAAGCTACAACGGTGAATCTTATTT
* * ** * ** * * * * ** *
49376416 CTCTGGCGGTGCAGTGGAATAGATTGAA-CCTACAATGGCAAATCTTGC-TCCAC-GACATTGTA
131 CCCTGACATTGCAATTAAAAAGATTGAAGCC-ACAATGGCGAATCTTACTTCC-CTGGCGGTGCA
* ** *
49376478 ATTAAAA
194 GTGGAAC
** * ** * * ** ** * * *
49376485 AGATTGAAGAC-ACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATA
1 AGATTGAAG-CTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACA
*** * * * ** * *
49376549 ACGGCGAATCTGGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCTACAACTGTGAATCTTACT
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAAGATTGAAGCTACAACGGTGAATCTTATT
* ** * ** * * * ** *** ** *
49376614 T-CCTTAGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTA
130 TCCCTGA-CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCA
* ** *
49376678 ATTAAAA
194 GTGGAAC
* * ** * * *
49376685 AGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * * * * *
49376750 CGATGAATCTTACATCTCTGGCGGTGC-AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * ** * *
49376814 TCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
49376879 TGGAAC
195 TGGAAC
* * * *
49376885 AGATTGAAGCTACAATGGTGAATCTTGCTTCAC-GACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * **
49376949 CGGCGAATCTTATTTCCCTGGCGGTG-TAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGA-AAGATTGAAGCTACAACGGTGAATCTTATT
** * * *
49377013 TCCCCAACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAG
*
49377078 TGGAAT
195 TGGAAC
* * * * *
49377084 AGATTGAAACTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * ***
49377149 TGGTGAATCTTACTTCCCTGGCGGTGC-AGTGGAATATATTGAAGCTATAACGATGAATCTGGCT
66 CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAA-AGATTGAAGCTACAACGGTGAATCTTATT
* * * *
49377213 TCCCCGACATTACAATT-AAAAGATTGAAGCCACAACT-GTGAATCTTACTTCCTTGGCGGTGCA
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCTTACTTCCCTGGCGGTGCA
49377276 GTGGAAC
194 GTGGAAC
* ** *
49377283 AGATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GACATTGTAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACATTGCAATTAAAAAGATTGAAGCCACA
* ** * * * * ** * * *
49377347 ACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAACCACAACGATGAATCTTA
65 ACGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAAGATTGAAGCTACAACGGTGAATCTTA
49377410 CTTCTCTGGT
Statistics
Matches: 7046, Mismatches: 1420, Indels: 509
0.79 0.16 0.06
Matches are distributed among these distances:
185 1 0.00
186 118 0.02
187 7 0.00
188 2 0.00
192 1 0.00
195 1 0.00
197 4 0.00
198 101 0.01
199 2663 0.38
200 3872 0.55
201 48 0.01
202 5 0.00
203 1 0.00
204 16 0.00
205 8 0.00
207 8 0.00
208 13 0.00
209 33 0.00
210 26 0.00
211 18 0.00
212 13 0.00
213 22 0.00
214 26 0.00
215 30 0.00
216 8 0.00
217 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (200 bp):
AGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA
CGGCGAATCTTACTTCCCTGACAGTGCAATTGGAAAGATTGAAGCTACAACGGTGAATCTTATTT
CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGT
GGAAC
Found at i:49368745 original size:399 final size:398
Alignment explanation
Indices: 49367692--49368771 Score: 1008
Period size: 399 Copynumber: 2.7 Consensus size: 398
49367682 ATAGTGGAAT
* ** * * * ** * * *
49367692 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACAGCGAATCCTACTTCCCTGGCGGTACAATGGAACAGATTGAAGCGACAA
* * * * ** *
49367757 CAGCGAATCTT-ACTTCCTCGACATTGCAATTAAAAAGATTGAAATCACAACGGCGAATCTTACT
66 CGGTGAATCTTGGC-TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* ** * * * ** * * * * * * **
49367821 TTCCTTGCGGTACAGTGGACCAGATTGAAGCTACAATGGCAAATCTTGCTTCC-CAAACATTGTA
130 TCCCTAACAGTGCAATGGAAAAAATTGAAGCCACAATAGCGAATCTTAC-TCCAC-AACAGTACA
* ** * * * * * * * **
49367885 ATTAAAAAGATTGAAGGTACAACGGTGAATCTTACTTCCCTGGCGGC-ACAGTGAAACAGATACA
193 AATAAAAAGATTGAAGCCACAACAGCGAACCTTACTTCCCTGAC-ACTATAGTGAAAAAGATTGA
*
49367949 AGCACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
257 AGCACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
* * * *
49368014 CATACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTGGCTCTCCCAACA
322 CATACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGCGAATATGGCTCTCCCAACA
49368079 TTGCAATTAAAA
387 TTGCAATTAAAA
* * *
49368091 AGATTGAAGCCACAACGGCGAATCCTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACAGCGAATCCTACTTCCCTGGCGGTACAATGGAACAGATTGAAGCGACAA
** *
49368156 CGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTT
66 CGGTGAATCTTGGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
** * ** * * * * *
49368221 CCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGCTCCACAACATTGCAAAT
131 CCCTAACAGTGCAATGGAAAAAATTGAAGCCACAATAGCGAATCTTACTCCACAACAGTACAAAT
* * * * * **
49368286 AAAAAGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGCTATAGTGGAGCAGATTGAAGCT
196 AAAAAGATTGAAGCCACAACAGCGAACCTTACTTCCCTGACACTATAGTGAAAAAGATTGAAGC-
* * * ** *
49368351 ACAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTTAATCTT
260 ACAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCAT
* ** *
49368416 ACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTGAATTATGTTTC-CCCGACATT
325 ACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGCGAA-TATGGCTCTCCCAACATT
49368480 GCAATTAAAA
389 GCAATTAAAA
* * * *
49368490 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCCACAACAGCGAATCCTACTTCCCTGGCGGTACAATGGAACAGATTGAAGCGACAA
* * * *
49368555 CGGTGAATC-TGGCTCCCCTGACATTGCAATTAGAAAGTTTGAAGCCACAACGGCGAATCTTATT
66 CGGTGAATCTTGGCTCCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* * * * ** *
49368619 TCCCTAACATTGCAAT-TAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCTCTGGCGGTAC-
130 TCCCTAACAGTGCAATGGAAAAA-ATTGAAGCCACAATAGCGAATCTTACTCCAC-AACAGTACA
* * * * * * * *
49368682 AGTGGAATAGATTGAAGCTACAACAGCGAATCTTAC-TCCAC-GACATTGTAGTTAAAAAGATTG
193 AAT-AAAAAGATTGAAGCCACAACAGCGAACCTTACTTCC-CTGACACTATAGTGAAAAAGATTG
**
49368745 AAGCCACAACGACGAATCTTACTTCCC
256 AAG-CACAACGGTGAATCTTACTTCCC
49368772 TGGCAGTGTA
Statistics
Matches: 569, Mismatches: 101, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
397 2 0.00
398 76 0.13
399 455 0.80
400 36 0.06
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (398 bp):
AGATTGAAGCCACAACAGCGAATCCTACTTCCCTGGCGGTACAATGGAACAGATTGAAGCGACAA
CGGTGAATCTTGGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
CCCTAACAGTGCAATGGAAAAAATTGAAGCCACAATAGCGAATCTTACTCCACAACAGTACAAAT
AAAAAGATTGAAGCCACAACAGCGAACCTTACTTCCCTGACACTATAGTGAAAAAGATTGAAGCA
CAACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCATA
CTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGCGAATATGGCTCTCCCAACATTGC
AATTAAAA
Found at i:49368856 original size:499 final size:495
Alignment explanation
Indices: 49368340--49377614 Score: 6671
Period size: 499 Copynumber: 18.6 Consensus size: 495
49368330 ATAGTGGAGC
* * * * *
49368340 AGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGAC--TGTAATGAAAAA-ATTGAAGCTACAA
* * * ** * ** * * * **
49368405 CAGTTAATCTTACTT-CCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTGAAT-TATGT
63 CGGTGAATCTTACTTCCCCGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCT-TAC
* * * * * * **
49368468 TTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCA
126 TTCCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCA
** ** * * * ** * * * * *
49368533 ATGGAGCAGATTGAAGCGACAACGGTGAATCTGGCTCCCCTGACATTGCAATTAGAAAGTTTGAA
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAAAGATTGAA
* * * * **
49368598 GCCACAACGGCGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAAT
256 GCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * *
49368663 CTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACTCCACGACAT
321 CTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCCGACAT
* * * * * * *
49368728 TGTAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGTAGGGGAGCAGAT
386 TGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGAT
* * *
49368793 TGAAGCCACAACGATGAATCTTGTTTCTCGGACATTGCAATTAAAA
451 TGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * *
49368839 AGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCG-GTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC---CGACTGTAAT-GAAAAAATTGAAGCTACA
* * * *** * * * * *
49368903 ACGGCGAATCTTGCATCCAAAACATTGTAAATAAAAAGATTGAAGCTACAATGGAGAATCTTACT
62 ACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * * * **
49368968 TCCCTAGA-GGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACCGCA
127 TCCCT-GACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCA
** ** *
49369032 ATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCT-ACCAATGC-AGTGGAGTAGATTG
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATTG
* * * *** * * *
49369095 AATCTACAATGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAATATTGAAGCCACAACGGCGA
254 AAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * * * * **
49369160 ATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGA
319 ATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT-ACTCCCCGA
* *
49369225 CATTGCAATTAAAAATATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGCAC
383 CATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAAC
* * * * * *
49369289 AAATTGAAGCTACAAC-AGCGAATCTTACTCCACAATATTGCAATTAAAA
447 AGATTGAAGCTACAACGA-TGAATCTTGCTTCACGACATTGCAATTAAAA
* ** * * * ** * *
49369338 AGATTGAAGCCACAATGGCAAATCTTACTTTTCTGTCGGTACAGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-T-GAAAAAATTGAAGCTACAA
* * * *
49369403 TGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * ** *
49369468 CCCTCG-CGGTGCAGT-AGAACAGATTGAAGCCACAACGGGGAATCATGTTTCCCCGACATTGCA
128 CCCT-GACAGTGCAATGA-AAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCA
* * *
49369531 ATTAAAAAGATTGAAGCCACAACAGCAAATCTTACTTCCCT-AGCGGTGCAA-TGGAGCAGATTG
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATTG
** * * * *
49369594 AAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGGCGA
254 AAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* ** * * * **
49369659 ATCTTACTTCTCTGACAATGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAA
319 ATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTA-CTCCCCGA
* * * *
49369724 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGGAATA
383 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
* * *
49369789 GATTGAAGCTACAACAACGAATCTTGCTCCACGACATTGCAATTAAAA
448 GATTGAAGCTACAACGATGAATCTTGCTTCACGACATTGCAATTAAAA
* * * * ** * ** *
49369837 AGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC-CG-ACTGTAAT-GAAAAAATTGAAGCTACAA
* * * *
49369902 CGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAAAGGTGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * * * * * * *
49369967 CCCTGGGAGTGTAATGGAACAA-ATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACATTGTA
128 CCCTGACAGTGCAAT-GAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCA
* * * * * * *
49370030 ATTTAAAAGATTGAAG-TACAACGGTGAATCTTACTTCCCTG--GTGGCGCAGTGGAACAGATTC
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGC-AAGTGGAA-AGATTG
** * * * *
49370092 AAGCTACAATAGTGAATCTTA-TTTCCCAGACATTTCAATTAAAAATATTGAAGCCACAACGGTG
254 AAGCTACAACGGTGAATCTTACTTCCCCA-ACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * * * ** *
49370156 AATCTTACTTTTCTAGCGGTGCAGTGGAGCAAATTGAAGCTACAACGGCGAACCTGGCTCCCCTT
318 AATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCC-G
** *
49370221 ACATTATAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
382 ACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAAC
* * * * *
49370286 AGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAA
447 AGATTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * *
49370336 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTACAGTGAAACAAATTGCAA-CAACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-TGAAA-AAATTG-AAGCTACA
* * **
49370400 ACGGTGAATC-AAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTAC
62 ACGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * * ** ** * *
49370464 TTCCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACATTGAATC-TAGCTCCCCCGACATTGC
126 TTCCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGC
* * * * *
49370528 AATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGATGGTGC-AGTGAAACAGATTG
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAA-AGATTG
* * * * * **
49370592 AAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAAAGATTGAAGCCACAATAGCGA
254 AAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * * *
49370657 ATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACTCCACGAC
319 ATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCCGAC
* * * * * * * *
49370722 ATTGTAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGGGGAGCAG
384 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAG
* * *
49370787 ATTGAAGCTACAACGATGAATCCTGTTTCTCGGACATTGCAATTAAAA
449 ATTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * * * *
49370835 ATATTAAAGTCACAATGGCGAATCTTACTTCCCTAGCG-GTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC---CGACTGTAAT-GAAAAAATTGAAGCTACA
* * * *** * * * *
49370899 AAGGTGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCTTACT
62 ACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * * * *
49370964 TCCCT-AGCGGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTAATTTCTCC-GACACTGC
127 TCCCTGA-CAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTC-CCTGACATTGC
* ** *
49371027 AATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCCCT-ACCAATGC-AGTGGAGTAGATT
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATT
* * * *** * *
49371090 GAATCTACAACAGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
253 GAAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * * * **
49371155 AATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCG
318 AATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT-ACTCCCCG
*
49371220 ACATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGCA
382 ACATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAA
* * * * * *
49371284 CAAATTGAAGCTACAAC-AGCGAATCTTACTCCACAATATTGCAATTAAAA
446 CAGATTGAAGCTACAACGA-TGAATCTTGCTTCACGACATTGCAATTAAAA
* * * * * * ** *
49371334 AGATTGAAGCCATAATGGCAAATCTTACTTCTCTGTCGGTACAGTGGAGCAAATTGAAGCTATAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-T-GAAAAAATTGAAGCTACAA
* * * * *
49371399 TGGTGAATCTTGCTTCCCCGACATTGTAAGTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
*** * * * * * * * ** **
49371464 CCCTGGTGGTGCAGT-AGAACAGATTGACGCCACAATGGGGAATCATGTTTCCCCAACATTGCAA
128 CCCTGACAGTGCAATGA-AAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAA
*
49371528 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCT-A-GTGGTGCAA-TGGAGCAGATTG
192 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGT--TGCAAGTGGA-AAGATTG
** * * * * *
49371590 AAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGACGA
254 AAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * * * **
49371655 ATCTTACTTCTCTGGCGATGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAA
319 ATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTA-CTCCCCGA
* * * * *
49371720 AATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGGAATA
383 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
* * *
49371785 GATTGAAGCTACAACAACGAATCTTGCTCCACGACATTGCAATTAAAA
448 GATTGAAGCTACAACGATGAATCTTGCTTCACGACATTGCAATTAAAA
* * * * ** * ** *
49371833 AGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC-CG-ACTGTAAT-GAAAAAATTGAAGCTACAA
* * * * *
49371898 CAGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * * *
49371963 CCCTTG-GAGTGTAATGGAACAA-ATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACATTGT
128 CCC-TGACAGTGCAAT-GAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGC
* * * * * *
49372025 AATTCAAAAA-ATTGAAG-TACAACGGTGAATCTTACTTCCCTG--GTGGCGCACTGGAACAGAT
190 AATT-AAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGC-AAGTGGAA-AGAT
* ** * *
49372086 TCAAGCTACAATAGTGAATCTTA-TTTCCCAGACATTGCAATTAAAAATATTGAAGCCACAACGG
252 TGAAGCTACAACGGTGAATCTTACTTCCCCA-ACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * * **
49372150 CGAATCTTACTTTTCTAGCGGTGCAGTGGAGCAAATTAAAGCTACAACGGCGAATCTGGCTCCCC
316 CGAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACT-CCC
** * * *
49372215 CGACATTATAATTAAAAAGATTGAAGCTAGAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGA
380 CGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGA
* * * * *
49372280 ACAGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAA
445 ACAGATTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * *
49372332 AGATTGAAGCCACAATGGCGAGTCTTACTTCCCTGGCGGTACAGTGAAACAAATTGAAGCAACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-TGAAA-AAATTGAAGCTACAA
* * *
49372397 CGGTGAATC-AAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACT
63 CGGTGAATCTTA-CTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * ** ** ** *
49372461 TCCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACATTGAATCTGGCTCCCCCT-ACATTGCA
127 TCCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACT-TCCCTGACATTGCA
* * *
49372525 ATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGACGGTGC-AGTGGAACAGATTGA
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAA-AGATTGA
* * * * * * **
49372589 AACTACAACGGT-AATCTTATTTCTCTAACATTCCAATTAAAAAGATCGAAGCCACAATAGCGAA
255 AGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAA
* * ** *
49372653 ACTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACAACGAATCTTACTCCACGACA
320 TCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCCGACA
* * * * * *
49372718 TTGCAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGA
385 TTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
* * *
49372783 TTGAAGCTACAACGATGAATCTTGTTTCTCGGATATTGCAATTAAAA
450 TTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * *
49372830 AGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCG-GTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC---CGACTGTAAT-GAAAAAATTGAAGCTACA
* * * *** * * * *
49372894 ACGGCGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCTTACT
62 ACGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * * * *
49372959 TCCCT-AGCGGCGTAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTTCCC-GACACTGC
127 TCCCTGA-CAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGC
** ** *
49373022 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCT-ACCAATGC-AGTGGAGTAGATT
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATT
* * * * *
49373085 GAATCTACAACGGCGAATCTGAC-TCCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACAGC
253 GAAGCTACAACGGTGAATCTTACTTCCC-CAACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * **
49373149 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCC
317 GAATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT-ACTCCCC
*
49373214 GACATTGCAATTAAAAAGACTAAGGCCACAATCAATTAAAAAGATTAAGGCCATAATGGCGAATC
381 GACATTGCAATT---AA-A--AA-G---------ATT-----G---AA-GCCACAATGGCGAATC
* * * * * * * *
49373279 TTACTTCCCTGGCAATACAGTGGCACAAATTGAAGCTACAAC-AGCGAATCTTGCTCCACAATAT
421 TTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAGCTACAACGA-TGAATCTTGCTTCACGACAT
49373343 TGCAATTAAAA
485 TGCAATTAAAA
* * * * * * ** * * *
49373354 AGATTAAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-T-GAAAAAATTGAAGCTACAA
* * * **
49373419 TGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
49373484 CCCTGGCAGTGCAGT-AGAACAGATTGAAGCTACAACGGGGAATC-AAGTTTCCCCGACATTGCA
128 CCCTGACAGTGCAATGA-AAAAGATTGAAGCTACAACGGTGAATCTTA-CTTCCCTGACATTGCA
* *
49373547 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCT-AGCGGTGCAA-TGGAGCAGATTG
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATTG
* ** * * * * *
49373610 AAGCTACAACAGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGGTGA
254 AAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * * * **
49373675 ATCTTACTTCTCTGGCGATGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAA
319 ATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTA-CTCCCCGA
* * * * *
49373740 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTACAGTGGAATA
383 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
* * *
49373805 GATTGAAGCTACAACAACGAATCTTGCTCCACGACATTGCAATTAAAA
448 GATTGAAGCTACAACGATGAATCTTGCTTCACGACATTGCAATTAAAA
* * * * ** * ** *
49373853 AGATTAAAGTCACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC-CG-ACTGTAAT-GAAAAAATTGAAGCTACAA
* * * * *
49373918 CGGTGAATCTTATTTCCTCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * * * * * * * *
49373983 CCCTGGGAATGTAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGC-ACCCTAAACATTGTA
128 CCCTGACAGTGCAAT-GAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCA
* * * * ** *
49374046 ATTCAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-AGCGGCGC-AGTGGAACAGATTC
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGAA-AGATTG
** * *
49374109 AAGCTACAATAGTGAATCTTA-TTTCCCAGACATTGCAATTAAAAATATTGAAGCCACAACGGCG
254 AAGCTACAACGGTGAATCTTACTTCCCCA-ACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * ** * **
49374173 AATCTTACTTTTCTAGCGGTGCAGCGGAGTAAATTGAAGCTACAACGGCGAATCTGGCTCCCCCG
318 AATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACT-CCCCG
* * *
49374238 ACATTGTAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
382 ACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAAC
* * * * * *
49374303 AGGTTGAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAATTAAAA
447 AGATTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * *
49374353 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTACAGTGAAACAAATTGAAGCAACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-TGAAA-AAATTGAAGCTACAA
* ** *
49374418 CGGTGAATCATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * ** ** ** * *
49374483 CCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAATAGTGAATCTGGCTCCCCCGACATTGCAAT
128 CCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAAT
* * * * *
49374548 TAAAAAGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGC-AGTGGAACAGATTGAAA
193 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAA-AGATTGAAG
* * * * * * **
49374612 CTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAAAGATCGAAGCCATAATTGCGAATC
257 CTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* ** *
49374677 TTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAATAGCGAATCTTACTCCACGACATT
322 TTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCCGACATT
* * * * * *
49374742 GCAGTTAAAAATATTGAAGCCACAATGACGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATT
387 GCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATT
* ** *
49374807 GAAGCTACAACAATGAATCTTATTTCTCGGACATTGCAATTAAAA
452 GAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * * * *
49374852 ATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCG-GTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC---CGACTGTAAT-GAAAAAATTGAAGCTACA
* * *** * * * * *
49374916 ACGGCGAATCTT-GTATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCTTAG
62 ACGGTGAATCTTACT-TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * * * * * * * * *
49374980 TTCCCT-AGCGGCGCAGTGGAATAGATTCAAGCGACAACGGTGAATCTTATTTCCCCGACACTGC
126 TTCCCTGA-CAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGC
** ** *
49375044 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCT-ACCAATGC-AGTGGAGTAGATT
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGA-CGTTGCAAGTGGA-AAGATT
* * ** ** * * *
49375107 GAATCTACGACGACGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTG
253 GAAGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * * **
49375172 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCG
318 AATCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT-ACTCCCCG
* * *
49375237 ACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGTAGTGGCA
382 ACATTGCAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAA
* * * * *
49375301 CAAATTGAAGCTACAAC-AGCGAATCTTGCTCCACAATATTGCAATTAAAA
446 CAGATTGAAGCTACAACGA-TGAATCTTGCTTCACGACATTGCAATTAAAA
* * * * * * ** * * *
49375351 AAATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTA-A-T-GAAAAAATTGAAGCTACAA
* ** * *
49375416 TGGTGAATCTTGGTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * * ** *
49375481 CGCTGGCGGTGCAGT-AGAACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAA
128 CCCTGACAGTGCAATGA-AAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAA
* * * *
49375545 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTCCAA-TGGAGCAGATTGAA
192 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGA-AAGATTGAA
* * * * *
49375609 GCTACAACGGTGAATC-TAGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAA
256 GCTACAACGGTGAATCTTA-CTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAA
* * * * * * * **
49375673 TCGTACTTCCCTGGCGATGAAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAAC
320 TCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTA-CTCCCCGAC
* * * * * *
49375738 ATTGCAATTAAAAAGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGTAGTGGAATAG
384 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAG
* *
49375803 ATTGAAGCTACAACAATGAATCTTGCTCCACGACATTGCAATTAAAA
449 ATTGAAGCTACAACGATGAATCTTGCTTCACGACATTGCAATTAAAA
* ** * * ** * ** *
49375850 AGATTAAAGTTACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCC-CG-ACTGTAAT-GAAAAAATTGAAGCTACAA
* * * *
49375915 CGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * * * * * * * * * * **
49375980 CCCTGGTAGTGTAGTGGAACAA-ATTGAAGGTACAACAGCGAATCTTGC-ACCCTAAATATTTTA
128 CCCTGACAGTGCAAT-GAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCT-GACATTGCA
* * * *
49376043 ATTAAAAAGATTGAAGCTACAAC-G-GTAA--ATA-TT--GT-A-ATT--AA----AAAGATTGA
191 ATTAAAAAGATTGAAGCCACAACAGCG-AATCTTACTTCCCTGACGTTGCAAGTGGAAAGATTGA
* *** *** ** * *** * * *
49376093 AGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAGATTGAAGCTACAACGGTGAA
255 AGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAA
** * * ** * * * * * * * *
49376158 TCTTGTTTCCCTGACATTGCAAT-TAAAATGATTGAAGCCACAACAGCGAATCTTACTTCTCTGG
320 TCTTACTTCTCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAACGGCGAATCTTAC-TCCCCGA
*** ** *** * * ** ** * * * ** * ** *
49376222 TGGTGCAATGGAGCTGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACCTTGCAATTAAAAA
383 CATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACA
* * * * * ** * * ** **
49376287 GATTGAAGCCACAACTG-CGAATCTTACTTCCCTGGCGGTACAGTGGAGC
448 GATTGAAGCTACAAC-GATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * * ** * * *
49376336 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGAC--TGTAATGAAAAA-ATTGAAGCTACAA
* * * * * ** * ** * * * *
49376401 GGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAA-CCTACAATGGCAAATCTTGC-
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCC-ACAACGGCGAATCTTACT
* * * ** * ** *
49376464 TCCAC-GACATTGTAATTAAAAAGATTGAAGAC-ACAACGGCAAATCTTACTTCCCTGGCGGTGT
127 TCC-CTGACAGTGCAATGAAAAAGATTGAAG-CTACAACGGTGAATCTTACTTCCCTGACATTGC
* ** ** * * * * *** * * * * **
49376527 AGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTTTCCCCGACATTTCAATTAAAAAGATTGA
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAAAGATTGA
* ** * ** * ** * * * *
49376592 AGCTACAACTGTGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAA
255 AGCTACAACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAA
** * *** ** * * ** * * * * **
49376657 TCTTGTTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGAC
320 TCTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACT-CCCCGAC
* * ** * * *
49376722 ATTGTAATTAAAAAGATTGAAGCCACAACGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAG
384 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAG
* * *
49376787 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAA
449 ATTGAAGCTACAACGATGAATCTTGCTTCAC-GACATTGCAATTAAAA
* * ** ** * * * * *
49376835 ATATTGAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAATGGCGAATCTTACTTC-CCCG-ACTGTAAT-GAAAAAATTGAAGCTACAA
* * * * *
49376900 TGGTGAATCTTGCTT-CACGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTATTT
63 CGGTGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * ** * ** *
49376964 CCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAAT
128 CCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAAT
** * * * * *
49377029 TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGC-AGTGGAATAGATTGAAA
193 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAA-AGATTGAAG
* * * * *
49377093 CTACAACGGCGAATCTTGCTT-CCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAAT
257 CTACAACGGTGAATCTTACTTCCCCA-ACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * ** **
49377157 CTTACTTCCCTGGCGGTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACA
321 CTTACTTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTAC-TCCCCGACA
* * * *
49377222 TTACAATT-AAAAGATTGAAGCCACAACT-GTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAG
385 TTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAG
* * * * *
49377285 ATTGAAGCTACAATGGTGAATCTTGTTTCGCCGACATTGTAATTAAAA
449 ATTGAAGCTACAACGATGAATCTTGCTTC-ACGACATTGCAATTAAAA
* * ** * * * *
49377333 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACAT-TACAATTAAAAAGATTGAAACCACA
1 AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGAC-TGT--AATGAAAAA-ATTGAAGCTACA
* * * **** ** * ** * **
49377397 ACGATGAATCTTACTTCTCTGGTGGTG-AAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGT
62 ACGGTGAATCTTACTTCCCCGACATTGCAA-TTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * * * * ** * ** *
49377461 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCA
126 TTCCCTGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCA
* ** * * * * * * * ** *
49377526 GTGGAATAGATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGA
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGACGTTGCAAGTGGAAAGATTGA
*
49377589 AGCCACAACGGTGAATCTTACTTCCC
255 AGCTACAACGGTGAATCTTACTTCCC
49377615 TGGCGGTGTA
Statistics
Matches: 6991, Mismatches: 1538, Indels: 494
0.77 0.17 0.05
Matches are distributed among these distances:
484 7 0.00
485 210 0.03
486 107 0.02
487 1 0.00
489 4 0.00
491 1 0.00
492 1 0.00
493 4 0.00
495 4 0.00
496 11 0.00
497 37 0.01
498 1005 0.14
499 4298 0.61
500 824 0.12
501 37 0.01
502 10 0.00
503 3 0.00
504 1 0.00
506 2 0.00
507 1 0.00
508 3 0.00
516 3 0.00
517 1 0.00
518 2 0.00
520 1 0.00
521 4 0.00
522 2 0.00
523 7 0.00
524 337 0.05
525 63 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (495 bp):
AGATTGAAGCCACAATGGCGAATCTTACTTCCCCGACTGTAATGAAAAAATTGAAGCTACAACGG
TGAATCTTACTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC
TGACAGTGCAATGAAAAAGATTGAAGCTACAACGGTGAATCTTACTTCCCTGACATTGCAATTAA
AAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGACGTTGCAAGTGGAAAGATTGAAGCTAC
AACGGTGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
TTCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTACTCCCCGACATTGCAA
TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAG
CTACAACGATGAATCTTGCTTCACGACATTGCAATTAAAA
Found at i:49373423 original size:224 final size:225
Alignment explanation
Indices: 49373021--49373469 Score: 620
Period size: 224 Copynumber: 2.0 Consensus size: 225
49373011 CCCGACACTG
* * *
49373021 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAGTGGAGTAGATTG
1 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGGAGCAAATTG
* * * * * *
49373086 AATCTACAACGGCGAATCTGACTCCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGA
66 AAGCTACAACAGCGAATCTGACTCCCACAACATTGCAATTAAAAAGATTAAAGCCACAACAGCAA
* * *
49373151 ATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGA
131 ATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGA
49373216 CATTGCAATTAAAAAGACT-AAGGCCACAAT
196 CATTGCAATTAAAAAGACTGAA-GCCACAAT
* **
49373246 CAATTAAAAAGATT-AAGGCCATAATGGCGAATCTTACTTCCCTGGCAATACAGTGGCA-CAAAT
1 CAATTAAAAAGATTGAA-GCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGG-AGCAAAT
* *
49373309 TGAAGCTACAACAGCGAATCTTG-CT-CCACAATATTGCAATTAAAAAGATTAAAGCCACAACGG
64 TGAAGCTACAACAGCGAATC-TGACTCCCACAACATTGCAATTAAAAAGATTAAAGCCACAACAG
* * * *
49373372 CAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAATGGTGAATCTTGCTTCCC
128 CAAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCCC
* *
49373437 CGACATTGTAATTAAAAAGATTGAAGCCACAAT
193 CGACATTGCAATTAAAAAGACTGAAGCCACAAT
49373470 AGCGAATCTT
Statistics
Matches: 197, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
224 120 0.61
225 74 0.38
226 3 0.02
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (225 bp):
CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGGAGCAAATTG
AAGCTACAACAGCGAATCTGACTCCCACAACATTGCAATTAAAAAGATTAAAGCCACAACAGCAA
ATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGA
CATTGCAATTAAAAAGACTGAAGCCACAAT
Found at i:49373458 original size:50 final size:49
Alignment explanation
Indices: 49373404--49375982 Score: 477
Period size: 50 Copynumber: 51.7 Consensus size: 49
49373394 ACAGTGGAGC
* * *
49373404 AGATTGAAGTTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * * *
49373454 AGATTGAAGCCACAATAGCGAATCTTACTTCCCTGGCAGTGCAGTAGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGAATTA-AAA
* * ** *
49373504 AGATTGAAGCTACAACGGGGAATCAAGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* ** * * ** ** **
49373554 AGATTGAAGCCACAACAGCGAATCTTACTT-CCCTAGCGGTGCAATGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGA-CATTG-AATTAAAA
** * * *
49373604 AGATTGAAGCTACAACAGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * * * * * *
49373654 AGTTTGATGCCACAACGGTGAATCTTACTTCTCTGGCGA-TGCAGTGGAACA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGAC-ATTG-AAT-TAAAA
* * ** **
49373705 A-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * ** *
49373754 AGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGT-ACAGTGGAAT
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGA-A-TTAAAA
*** *
49373804 AGATTGAAGCTACAACAACGAATCTTGC-TCCACGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * ** **
49373853 AGATTAAAG-TCACAACGGCGAATCTTACTT-CCCTA-GTGGTGTAGTGGAGT
1 AGATTGAAGCT-ACAATGGCGAATCTTGCTTCCCCGACAT--TG-AATTAAAA
* * ** * *
49373903 AGATTGAAGCTACAACGGTGAATCTTATTTCCTCGACATTACAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATT-GAATTAAAA
* * * * ** * * * *
49373953 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGGAATGTAGTGGAACA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AAT-TAAAA
* * * ** *
49374004 A-ATTGAAGCTACAACGGTGAATCTTGC-ACCCTAAACATTGTAATTCAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCC-CGACATTG-AATTAAAA
* * * * *** * ** *
49374053 AGATTGAAGCTACAACGGTGAATCTTACTT-CCCTAGCGGCGCAGTGGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGA-CATTG-AATTAAAA
* * * ** *
49374103 AGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * ** * ** *** **
49374153 ATATTGAAGCCACAACGGCGAATCTTACTT-TTCTAGCGGTGCAGCGGAGTA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGA-CATTG-A-ATTAAAA
* * *
49374204 A-ATTGAAGCTACAACGGCGAATCTGGCTCCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * ** * ** *
49374253 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * ** * * *
49374303 AGGTTGAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * ** *
49374353 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGT-ACAGTGAAACA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGA-A-TTAAA-A
* * * * *
49374404 A-ATTGAAGCAACAACGGTGAATCATGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* ** * * * ** ** **
49374453 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * *
49374503 AGATTGAAGCTACAATAGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * ** * * * ** * ** *
49374553 AGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * ** * ** *
49374603 AGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATT-GAATTAAAA
* * * * * * * * ** * ** *
49374653 AGATCGAAGCCATAATTGCGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * *
49374703 AGATTGAAGCTACAATAGCGAATCTTAC-TCCACGACATTGCAGTTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * ** * ** **
49374752 ATATTGAAGCCACAATGACGAATCTTACTTCCCTGGCGGTGTAGTGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
**** ** * *
49374802 AGATTGAAGCTACAACAATGAATCTTATTTCTCGGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * ** * * *
49374852 ATATTAAAGCCACAATGGCGAATCTTACTT-CCCTAGCGGTGCAGTGGAACA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGA-CATTG-AAT-TAAAA
* ***
49374903 A-ATTGAAGCTACAACGGCGAATCTTG-TATCCAAAACATTGTAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCT-TCCCCGACATTG-AATTAAAA
* * *** * ** *
49374952 AGATTGAAGCTACAATGGAGAATCTTAG-TT-CCCTAGCGGCGCAGTGGAAT
1 AGATTGAAGCTACAATGGCGAATCTT-GCTTCCCCGA-CATTG-AATTAAAA
* * * * ** *
49375002 AGATTCAAGCGACAACGGTGAATCTTATTTCCCCGACACTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * ** **
49375052 AGATTGAAGCCACAATGGCGAATCTTACTT-CCCTACCAATGCAGTGGAGT
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGA-CATTG-AATTAAAA
* * * * * *
49375102 AGATTGAATCTACGACGACGAATCTGGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * ** * ** *
49375152 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * *
49375202 AGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * ** *
49375252 AGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGTAGTGGCACA
1 AGATTGAA-GCTACAATGGCGAATCTTGCTTCCCCGACATTG-AAT-TAAAA
** * * *
49375303 A-ATTGAAGCTACAACAGCGAATCTTGC-TCCACAATATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * ** ** **
49375351 AAATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGT-ACAGTGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGA-A-TTAAAA
* * * *
49375401 AGATTGAAGTTATAATGGTGAATCTTGGTTCCCCGACATTGTAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* ** * * * * ** * * *
49375451 AGATTGAAGCCACAACAGCGAATCTTACTTCGCTGGCGGTGCAGTAGAAC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGAATTA-AAA
* * *
49375501 AGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* ** * * * * ** ** **
49375551 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTCCAATGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGAC-ATTGAATTAAAA
* * * *
49375601 AGATTGAAGCTACAACGGTGAATCTAGCTCCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * ** * * * * * * *
49375651 AGTTTGAAGCCACAACAGCAAATCGTACTTCCCTGGCGA-TGAAGTGGAACA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGAC-ATTGAA-T-TAAAA
* * ** **
49375702 A-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * ** * ** *
49375751 AGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGTAGTGGAAT
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
**** *
49375801 AGATTGAAGCTACAACAATGAATCTTGC-TCCACGACATTGCAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTG-AATTAAAA
* * * * * * * ** **
49375850 AGATTAAAGTTACAACGGCGAATCTTACTT-CCCTA-GTGGTGTAGTGGAGC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACAT--TG-AATTAAAA
* * ** *
49375900 AGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAA
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATT-GAATTAAAA
* * *
49375950 AGATTGAAGCCACAATGGTGAATCTTACTTCCC
1 AGATTGAAGCTACAATGGCGAATCTTGCTTCCC
49375983 TGGTAGTGTA
Statistics
Matches: 1755, Mismatches: 698, Indels: 152
0.67 0.27 0.06
Matches are distributed among these distances:
48 9 0.01
49 188 0.11
50 1485 0.85
51 69 0.04
52 4 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (49 bp):
AGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACATTGAATTAAAA
Found at i:49376081 original size:36 final size:36
Alignment explanation
Indices: 49376032--49376101 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
49376022 TCTTGCACCC
* *
49376032 TAAATATTTTAATTAAAAAGATTGAAGCTACAACGG
1 TAAATATTGTAATTAAAAAGATTGAAGCCACAACGG
49376068 TAAATATTGTAATTAAAAAGATTGAAGCCACAAC
1 TAAATATTGTAATTAAAAAGATTGAAGCCACAAC
49376102 AACGAATCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.29
Consensus pattern (36 bp):
TAAATATTGTAATTAAAAAGATTGAAGCCACAACGG
Found at i:49376191 original size:136 final size:136
Alignment explanation
Indices: 49375942--49376201 Score: 315
Period size: 136 Copynumber: 1.9 Consensus size: 136
49375932 CCGACATTAC
**** * *
49375942 AATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAAATTGA
1 AATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
* * ** *
49376007 AGGTACAACAGCGAATCTTGCACCCTAAATATTTTAATTAAAAAGATTGAAGCTACAACGGTAAA
66 AGCTACAACAGCGAATCTTGCACCCTAAACATTGCAATTAAAAAGATTGAAGCCACAACGGTAAA
49376072 TATTGT
131 TATTGT
* * * *
49376078 AATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
* * ** * *
49376143 AGCTACAACGGTGAATCTTGTTTCCCT-GACATTGCAATTAAAATGATTGAAGCCACAAC
66 AGCTACAACAGCGAATCTTG-CACCCTAAACATTGCAATTAAAAAGATTGAAGCCACAAC
49376202 AGCGAATCTT
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
136 98 0.96
137 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (136 bp):
AATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
AGCTACAACAGCGAATCTTGCACCCTAAACATTGCAATTAAAAAGATTGAAGCCACAACGGTAAA
TATTGT
Found at i:49376284 original size:236 final size:236
Alignment explanation
Indices: 49375837--49376301 Score: 574
Period size: 236 Copynumber: 2.0 Consensus size: 236
49375827 GCTCCACGAC
** ** * *
49375837 ATTGCAATTAAAAAGATTAAAGTTACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAG
1 ATTGCAATTAAAAAGATTAAAGCCACAACAACGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAG
**
49375902 ATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATG
66 ATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACA
* * * * *
49375967 GTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAAATTGAAGGTACAACAGCGAATCTTGCACCC
131 GCGAATCTTACTTCCCTGGTAGTGCAATGGAACAAATTGAAGCTACAACAGCGAATCTGGCACCC
* * ** *
49376032 TAAATATTTTAATTAAAAAGATTGAAGCTACAACGGTAAAT
196 CAAACATTGCAATTAAAAAGATTGAAGCCACAACGGTAAAT
* * * *
49376073 ATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTA-TA
1 ATTGCAATTAAAAAGATTAAAGCCACAACAACGAATCTTACTTCCCTAGCGGTGCAGTGG-AGCA
* * * *
49376137 GATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAAC
65 GATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAAC
* * * ** * *
49376202 AGCGAATCTTACTTCTCTGGTGGTGCAATGGAGCTGATTGAAGCTACAAC-GATGAATCTGGCTC
130 AGCGAATCTTACTTCCCTGGTAGTGCAATGGAACAAATTGAAGCTACAACAG-CGAATCTGGCAC
** *
49376266 CCCCGACCTTGCAATTAAAAAGATTGAAGCCACAAC
194 CCCAAACATTGCAATTAAAAAGATTGAAGCCACAAC
49376302 TGCGAATCTT
Statistics
Matches: 191, Mismatches: 36, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
235 1 0.01
236 189 0.99
237 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (236 bp):
ATTGCAATTAAAAAGATTAAAGCCACAACAACGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAG
ATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACA
GCGAATCTTACTTCCCTGGTAGTGCAATGGAACAAATTGAAGCTACAACAGCGAATCTGGCACCC
CAAACATTGCAATTAAAAAGATTGAAGCCACAACGGTAAAT
Found at i:49376942 original size:449 final size:448
Alignment explanation
Indices: 49368141--49377606 Score: 2412
Period size: 449 Copynumber: 21.1 Consensus size: 448
49368131 ACAGTGGAAC
* * * *
49368141 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *** * * * ** * *
49368206 TGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTG-CT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * * * * * **
49368270 CCAC-AACATTGCAAATAAAAAGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTC-GCTATA
131 CC-CTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAG-TGCA
** * *
49368333 GTGGAGCAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAA
194 GTGGAAAAGATTGAAGCTACAATGGTGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTGAA
* * ** * * * *
49368398 GCCACAACAGTTAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTGAAT
258 GACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAAT
* ** *
49368463 -TATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGC
323 CT-TGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGC
* ** * * * * *
49368527 GGTGCAATGGAGCAGATTGAAGCGACAACGGTGAATCTGGCTCCCCTGACATTGCAATTAGAA
387 GGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTCCCC-AACATTGCAATTAAAA
* * *** * **
49368590 AGTTTGAAGCCACAACGGCGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * **
49368655 -TAGCGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAACAGCGAATCTT-AC
66 CGA-TGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * * * ** * *
49368718 TCCAC-GACATTGTAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCAGTGTA
130 TCC-CTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCA
* ** * * * * * * *
49368782 GGGGAGCAGATTGAAGCCACAACGATGAATCTTGTTTCTCGGACATTGCAATTAAAAAGATTAAA
194 GTGGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAGATTGAA
* * * * * * *
49368847 GCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAAT
258 GACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAAT
** *** ** * * * * * *
49368912 CTTGCATCCAAAACATTGTAAATAAAAAGATTGAAGCTACAATGGAGAATCTTACTTCCCTAGAG
323 CTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCG
* * * * **
49368977 GAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACCGCAATTAAAA
388 GTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAAA
* * ** * * * * ** ** * *
49369039 AGATTGAAGCCACAATGGCGAATCTTACT-TCCCTACCAATGCAGTGGAGTAGATTGAATCTACA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGA-CATTGCAATTAAAAAGATTGAAGCCACA
* ** *** * * * ** * * ** * * * * **
49369103 ATGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACT
65 ACGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
**** * ** * ** * * ** * * * * *
49369168 TCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGACATTGCAA
130 TCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAG
** * * * * * * * ** *
49369233 TTAAAAATATT-AAGGCCACAATGGCGAATCTTACTTCC-CTGGCAGTGCAGTGGCACAA-ATTG
195 TGGAAAAGATTGAA-GCTACAATGGTGAATCTTGC-TCCAC-GACATTGCAAT-TAAAAAGATTG
* ***** * * ** ** * * *
49369295 AAG-CTACAACAGCGAATCTTAC-TCCAC-AATATTGCAATTAAAAAGATTGAAGCCACAATGGC
256 AAGAC-ACAACGGCGAATCTTACTTCC-CTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGT
* * * * * ** * ** ** * * * *
49369357 AAATCTTACTTT-TCTGTCGGTACAGTGGAGCAGATTGAAGCTATAATGGTGAATCTTGCTTCCC
319 GAATCTT-GTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT
* * ** * * ** * * * * * * ** *
49369421 CGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTC-GCGGTGC-AGTA
383 TGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCC-CAACATTGCAATTA
*
49369484 GAAC
446 -AAA
* * *
49369488 AGATTGAAGCCACAACGGGGAATCAT-GTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGTGAATC-TGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * *
49369552 AC-A-GCAAATCTTACTTCCCTAGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGG
65 ACGATG--AATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG
* * * * * * * *
49369615 CTCCCCCGACATTGCAATTAAAAAGT-TTGATGCCACAACGGCGAATCTTACTTCTCTGACAATG
128 TTTCCCTGACATTGCAATTAAAAA-TATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTG
* ** *
49369679 CAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTATTTCC-CTAACATTGCAATTAAAAAGAT
192 CAGTGGAA-AAGATTGAAGCTACAATGGTGAATCTT-GCTCCAC-GACATTGCAATTAAAAAGAT
* * * * * * * ** ***
49369742 TGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAACAAC
254 TGAAGACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGT
* * * * * * * *
49369807 GAATCTTG-CTCCACGACATTGCAATTAAAAAGATTAAAGTCACAACGGCGAATCTTACTTCCCT
319 GAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTT
* * * ** * * *
49369871 AGTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAATTAAA
384 GGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAA
49369936 A
448 A
* ** * * ** * * * * *
49369937 AGATTGAAGCCACAAAGGTGAATCTTACTTCCCTGGGAGTGTAATGGAACAA-ATTGAAGCTACA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAAT-TAAAAAGATTGAAGCCACA
** * * ** * ** *
49370001 ACGGCGAATCTTGC-ACCCTAAACATTGTA-A-TTTAAAAGATTGAAG-TACAACGGTGAATCTT
65 ACGATGAATCTTACTTCCCT-GGC--GGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTT
** ***** * ** * * * * * * * * * * *
49370062 ACTTCCCTGGTGGCGCAGTGGAACAGATTCAAGCTACAATAGTGAATCTTATTTCCCAGACATTT
127 GTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTG
* ** * * * * *** * ** * * **
49370127 CAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTTTCTAGCGGTGCAGTGGAGCAA-ATT
192 CAGTGGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCACGA-CATTGCAAT-TAAAAAGATT
* ** * ** ** * * ** ** * * *
49370191 GAAG-CTACAACGGCGAACCTGGCTCCCCTTACATTATAATTAAAAAGATTGAAGCCACAATGGC
255 GAAGAC-ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGT
** * * ** * * ** * * * * * * * ** *
49370255 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACGATAAACCTTGTTTCCCT
319 GAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTT
* ** * ** * * * * *** ** * * *
49370320 GACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTACAGTGAAA
384 GGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAA
49370385 CA
448 -A
* ** * *
49370387 A-ATTGCAA-CAACAACGGTGAATCAAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTG-AAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * ** * *
49370450 A-TAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACATTGAATCTAGC
65 ACGA-TGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT
* * * ** * * ***
49370514 TCCCCCGACATTGCAATTAAAAAGT-TTGCAGCCACAACAGCGAATCTTACTTCCCTGATGGTGC
129 TTCCCTGACATTGCAATTAAAAA-TATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGC
* * ** * * * *
49370578 AGT-GAAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAAAGATTG
193 AGTGGAAA-AGATTGAAGCTACAATGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAGATTG
* ** * ** ** * *
49370642 AAGCCACAATAGCGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAACAGCGA
256 AAGACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGA
** * ** * * ** *
49370707 ATCTT-ACTCCACGACATTGTAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGG
321 ATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGG
* * ** * * * **
49370771 CGGTGTAGGGGAGCAGATTGAAGCTACAACGATGAATCCTGTTTCTCGGACATTGCAATTAAAA
386 CGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-TTCCCCAACATTGCAATTAAAA
* * * * * ** * * ** * * * *
49370835 ATATTAAAGTCACAATGGCGAATCTTACT-TCCCTAGCGGTGCAGTGGAACAA-ATTGAAGCTAC
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGA-CATTGCAAT-TAAAAAGATTGAAGCCAC
* * * * **** * ** * * *
49370898 AAAGGTGAATCTTGCATCCAAAACATTGTA-A-TTAAAAAGATTGAAGCTACAATGGAGAATCTT
64 AACGATGAATCTTACTTCCCTGGC--GGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTT
** *** * ** * * * * * * * * * *
49370961 ACTTCCCT-AGCGGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTAATTTCTCCGACACT
127 GTTTCCCTGA-CATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGT
* ** * * * * * * * ** **
49371025 GCAATTAAAAAGATTGAAGCCACAATAGCGAATCTTACTTCC-CTACCAATGCAGTGGAGTAGAT
191 GCAGTGGAAAAGATTGAAGCTACAATGGTGAATCTTGC-TCCACGA-CATTGCAATTAAAAAGAT
* * *** * * * ** * * ** ** *
49371089 TGAA-TCTACAACAGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
254 TGAAGAC-ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGG
* ** * **** * * ** * * * * ** *
49371153 CGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCC
318 TGAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT
* * ** * ** * * * * * *** * * *
49371218 CGACATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
383 TGGCGGTGCAGTGGAATAGATTGAA-GCTACAACGGTGAATCTT-GTTCCCCAACATTGCAAT-T
* *
49371282 CACA
445 AAAA
* * * ** * * * *
49371286 A-ATTGAAGCTACAACAGCGAATCTTACT-CCACAATATTGCAATTAAAAAGATTGAAGCCATAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *** * * * * * * *
49371349 TGGCAAATCTTACTTCTCTGTCGGTACAGTGGAGCAAATTGAAGCTATAATGGTGAATCTTGCTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * * ** * * **
49371414 CCCCGACATTGTAAGTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAGT
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
* * * * * * * * * *
49371479 AGAACAGATTGACGCCACAATGGGGAATCATGTTTCCCCAACATTGCAATTAAAAAGATTGAAGC
196 GGAAAAGATTGAAGCTACAATGGTGAATCTTG-CTCCACGACATTGCAATTAAAAAGATTGAAGA
* * * * *
49371544 CACAACAGCGAATCTTACTTCCCTAGTGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCT
260 CACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCT
* * * * * * * ** *
49371609 GGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGACGAATCTTACTT-CTCTGGCGA
325 TGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT-TGGCGG
* * * * *
49371673 TGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAAAATTGCAATTAAAA
389 TGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAAA
* * ** * * * * * * ** * *
49371734 AGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ** * * ** * * * **
49371799 CAACGAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTAAAG-TCACAACGGCGAATCTTAC
66 CGATGAATCTTACTTCC-CTGGCGGTACAGTGGAACAGATTGAAGCT-ACAACGGTGAATCTTGT
* * * ** ** * * ** * * * * * *
49371861 TTCCCT-A-GTGGTGTAGTGGAGCAGATTGAAGCTACAACAGTGAATCTTATTTCCCCGACATTA
129 TTCCCTGACAT--TGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTG
* ** * * * * * * *
49371924 CAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCC-CTTG-GAGTGTAATGGAACAA-A
192 CAGTGGAAAAGATTGAAGCTACAATGGTGAATCTTGC-TCCAC--GACATTGCAAT-TAAAAAGA
* * ** ** * ** ** *
49371986 TTGAAG-CTACAACGGCGAATCTTGC-ACCCTAAACATTGTAATTCAAAAAATTGAAG-TACAAC
253 TTGAAGAC-ACAACGGCGAATCTTACTTCCCT-GGCGGTGTAGTGGAGCAGATTGAAGCTACAAC
** * ****** * ** * * * * *
49372048 GGTGAATCTTACTTCCCTGGTGGCGCACTGGAACAGATTCAAGCTACAATAGTGAATCTTATTTC
316 GGTGAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTC
** * ** * ** * * * * * ** * * ** *
49372113 CCAGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTTTCTAGCGGTGCAGTG
381 CTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAAT-
* **
49372178 GAGCA
444 TAAAA
* * * ** * *
49372183 A-ATTAAAGCTACAACGGCGAATCTGGCTCCCCCGACATTATAATTAAAAAGATTGAAGCTAGAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * * * * *
49372247 CGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGGTTGAAGCTACAACGATAAACCTTGTTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * * * *
49372312 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAGTCTTACTTCCCTGGCGGTACAGT
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
* * * ** * *
49372377 -GAAACAAATTGAAGCAACAACGGTGAATCAAGTTTCCCCGACATTGCAATTAAAAAGATTGAAG
196 GGAAA-AGATTGAAGCTACAATGGTGAATCTTG-CTCCACGACATTGCAATTAAAAAGATTGAAG
* * * * **
49372441 CCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACATTGAATC
259 ACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATC
* * * * * * * ** * * *
49372506 TGGCTCCCCCTACATTGCAATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGACGG
324 TTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGG
* * * * * *
49372571 TGCAGTGGAACAGATTGAAACTACAACGGT-AATCTTATTTCTCTAACATTCCAATTAAAA
389 TGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAAA
* ** * * ** * * * * ** * ** * *
49372631 AGATCGAAGCCACAATAGCGAAACTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * ** * ** * * ** **
49372696 CAACGAATCTTAC-TCCAC-GACATTGCAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACT
66 CGATGAATCTTACTTCC-CTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* ** * * ** ** * * * * ** * *
49372759 TCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGATGAATCTTGTTTCTC-GGATATTGCA
130 TCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGG-CAGTGCA
* ** * * * * * ** * * *
49372823 ATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCC-CTAGCGGTGCAGTGGAACAA-ATTG
194 GTGGAAAAGATTGAAGCTACAATGGTGAATCTTGC-TCCACGA-CATTGCAAT-TAAAAAGATTG
* * **** ** * ** ** * *
49372886 AAG-CTACAACGGCGAATCTTGCATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAG
256 AAGAC-ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTG
** * * * ** * * * * *
49372950 AATCTTACTTCCCTAGCGGC-GT--AGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTTC
320 AATCTTGTTTCCC---CGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA-CTTC
* * ** * ** * * * * * * * * * *
49373012 C-CGACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAGTG
381 CTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATT
* **
49373076 GAGT
445 AAAA
* * * * *
49373080 AGATTGAATCTACAACGGCGAATCTGACTCCCTCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * *
49373145 C-AGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTT
66 CGA-TGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * *
49373209 TCCCCGACATTGCAATTAAAAAGACTAAGGCCACAATCAATTAAAAAGATTAAGGCCATAATGGC
130 TCCCTGACATTGCAA-T--------TAA----A-AAT--ATT-----G---AA-GCCACAATGGT
* * * * ** *
49373274 GAATCTTACTTCCCTGGCAATACAGTGGCACAA-ATTGAAGCTACAACAGCGAATCTTGCTCCAC
170 GAATCTTACTTCTCTGGCAGTGCAGTGG-AAAAGATTGAAGCTACAATGGTGAATCTTGCTCCAC
* * * * * * **
49373338 AATATTGCAATTAAAAAGATTAAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAG
234 GACATTGCAATTAAAAAGATTGAAGACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAG
* * * * **
49373403 CAGATTGAAGTTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACA
299 CAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACA
* * * * * * * **
49373468 ATAGCGAATCTTACTTCCCTGGCAGTGCAGTAGAACAGATTGAAGCTACAACGGGGAATCAAGTT
364 ATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-T
*
49373533 TCCCCGACATTGCAATTAAAA
428 TCCCCAACATTGCAATTAAAA
* * ** * * ** ** ** *
49373554 AGATTGAAGCCACAACAGCGAATCTTACT-TCCCTAGCGGTGCAATGGAGCAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGA-CATTGCAATTAAAAAGATTGAAGCCACA
** * * * ** * * ** * * * * **
49373618 AC-AGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGATGCCACAACGGTGAATCTTAC
65 ACGA-TGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT
* * * * * * * * * ** *
49373682 TTCTCTGGCGA-TGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTG
129 TTCCCTGAC-ATTGCAAT-TAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTG
* ** * * * * * * * * * ** *
49373745 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTCCTGCTCTGGCAGTACAGTGGAATAGATTG
192 CAGTGGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAGATTG
** * * ** * * ** ** *
49373810 AAG-CTACAACAACGAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTAAAG-TCACAACGG
256 AAGAC-ACAACGGCGAATCTTACTTCC-CTGGCGGTGTAGTGGAGCAGATTGAAGCT-ACAACGG
* ** * * ** * ** ** * * *
49373871 CGAATCTTACTT-CCCTA-GTGGTGTAGTGGAGTAGATTGAAGCTACAACGGTGAATCTTATTTC
318 TGAATCTTGTTTCCCCGACAT--TACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTC
* * ** * * ** * * * * **** * * *
49373934 CTCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGGAATGTAGTG
381 CTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAAT-
* *
49373999 GAACA
444 TAAAA
* * * *** * * *
49374004 A-ATTGAAGCTACAACGGTGAATCTTGCACCCTAAACATTGTAATTCAAAAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * ** *
49374068 CGGTGAATCTTACTTCCCTAGCGGCGCAGTGGAACAGATTCAAGCTACAATAGTGAATCTTATTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * * * * *
49374133 CCCAGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTTTCTAGCGGTGCAGC
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
* * * * * *
49374198 GGAGTAA-ATTGAAGCTACAACGGCGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAG
196 GGA-AAAGATTGAAGCTACAATGGTGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAAG
* * * * * *
49374262 CCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAACGGTAAACC
259 ACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATC
* * *
49374327 TTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGG
324 TTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGG
* * * * * * *
49374392 TACAGTGAAACAAATTGAAGCAACAACGGTGAATCATGTTTCCCCGACATTGCAATTAAAA
389 TGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-TTCCCCAACATTGCAATTAAAA
* * ** * * * ** ** ** *
49374453 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * ** * * ** * * * * * * **
49374518 -TAGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACT
66 CGA-TGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* ** * ** * * * * * * ** * * *
49374582 TCCCTGGCGGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAA
130 TCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAG
** * * * * * * * * * ** * ** *
49374647 TTAAAAAGATCGAAGCCATAATTGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAG
195 TGGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAGATTGAAG
** * ** * ** ** * * * **
49374712 -CTACAATAGCGAATCTTAC-TCCAC-GACATTGCAGTTAAAAATATTGAAGCCACAATGACGAA
259 AC-ACAACGGCGAATCTTACTTCC-CTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAA
** * * ** ** * ** ** * *** * *
49374774 TCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACAATGAATCTTA-TTTCTCGGA
322 TCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGG-
** * ** * * * * * * * * * ** * * *
49374838 CATTGCAATTAAAAATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACA
386 CGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAAT-TAAAA
* * * * *** * *
49374903 A-ATTGAAGCTACAACGGCGAATCTTG-TATCCAAAACATTGTAATTAAAAAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGTGAATCTGGCT-CCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * ** * * * *
49374966 ATGGA-GAATCTTAGTTCCCTAGCGGCGCAGTGGAATAGATTCAAGCGACAACGGTGAATCTTAT
65 A-CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT
* * * * * ** *
49375030 TTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCA
129 TTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCA
** * * * ** * *
49375095 GTGGAGTAGATTGAATCTACGACGACGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAA
194 GTGGAAAAGATTGAAGCTACAATGGTGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAA
* * * * * *
49375160 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAAT
258 GACACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAAT
* *
49375225 CTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGC
323 CTTGTTTCCCCGACATTACAATTAAAAAGATTGAA-GCCACAATGGTGAATCTTACTTCCTTGGC
* * * * * * * * * *
49375289 AGTGTAGTGGCACAAATTGAAGCTACAACAGCGAATCTTGCTCCACAATATTGCAATTAAAA
387 GGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTCCCCAACATTGCAATTAAAA
* ** ** * * * ** * * ** ** ** *
49375351 AAATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * * * ** * * * * **
49375416 TGGTGAATCTTGGTTCCCCGACATTGTA-A-TTAAAAAGATTGAAGCCACAACAGCGAATCTTAC
66 CGATGAATCTTACTTCCCTGGC--GGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT
* * ** * * * * * ** * * * *
49375479 TTCGCTGGCGGTGC-AGTAGAACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGC
129 TTCCCTGACATTGCAATTA-AAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGC
* ** * ** * * * ** * ** **
49375543 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTCCAATGGAGCAGATTG
193 AGTGGAAAAGATTGAAGCTACAATGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTG
* * * * ** * * ** ** * * * *
49375607 AAG-CTACAACGGTGAATC-TAGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGCCACAACAGC
256 AAGAC-ACAACGGCGAATCTTA-CTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGT
* * ** * * * * * * * * *
49375670 AAATCGTACTTCCCTGGCGATGA-AGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTATTTCC
319 GAATCTTGTTTCCCCGAC-ATTACAAT-TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCC
* ** ** * ** * * ** * * * *** ** * * **
49375733 CTAACATTGCAATTAAAAAGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGTAGTGG
382 TTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTA
*
49375798 AAT
446 AAA
* ** * * * **
49375801 AGATTGAAGCTACAACAATGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTAAAGTTACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * ** * *
49375865 CGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * * * * *
49375930 CCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGT
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
* ** * * * * **
49375995 GGAACAA-ATTGAAGGTACAACAGCGAATCTTGCACC-CTAAATATTTTAATTAAAAAGATTGAA
196 GGAA-AAGATTGAAGCTACAATGGTGAATCTTGCTCCAC--GACATTGCAATTAAAAAGATTGAA
* * * ** ** * ***
49376058 G-CTACAACGG-TAA----A--T--AT-----TGTAATTAAAAAGATTGAAGCCACAACAACGAA
258 GAC-ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAA
** * * ** * * *** * * * ** * *
49376108 TCTTACTTCCCTGGCGGTGCAGTGGTATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGAC
322 TCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGC
** * * * * * * * * ****** ** **
49376173 ATTGCAAT-TAAAATGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGTGGTGCAATGGAGC
387 GGTGCAGTGGAATA-GATTGAAGCTACAACGGTGAATCTT-GTTCCCCAACATTGCAATTAAAA
* * * *
49376236 TGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACCTTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* *
49376301 CTG-CGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTT
66 C-GATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
* * * *
49376365 TCCCTGACATTGTAATTAAAAATATTGAAGCCACAAGGGCGAATCTTACTTCTCTGGCGGTGCAG
130 TCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAG
* * ** *
49376430 TGGAATAGATTGAACCTACAATGGCAAATCTTGCTCCACGACATTGTAATTAAAAAGATTGAAGA
195 TGGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGA
* * * *
49376495 CACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCT
260 CACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCT
* * * *
49376560 GGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCTACAACT-GTGAATCTTACTTCCTTAGCGG
325 TGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAA-TGGTGAATCTTACTTCCTTGGCGG
* * *
49376624 TGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTAATTAAAA
389 TGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-TTCCCCAACATTGCAATTAAAA
* *
49376685 AGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
49376750 CGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
**
49376815 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGT
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
* * * *
49376880 GGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCACGACATTGCAATTAAAAATATTGAAGCC
196 GGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGAC
*
49376945 ACAACGGCGAATCTTATTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTT
261 ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTT
* *
49377010 GCTTCCCCAACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTG
326 GTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTG
* *
49377075 CAGTGGAATAGATTGAAACTACAACGGCGAATCTTGCTT-CCCAGACATTGCAATTAAAA
391 CAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-TTCCCCA-ACATTGCAATTAAAA
* * ** * * * ** * ** * * * *
49377134 AGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATATATTGAAGCTATAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * ** * * * * * **
49377199 CGATGAATCTGGCTTCCCCGACATTACAAT-TAAAAGATTGAAGCCACAACTGTGAATCTTACTT
66 CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
* * ** * ** * * * ** * * * * * *
49377263 CCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCCGACATTGTAAT
131 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
** * * * * *
49377328 TAAAAAGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAA-A
196 GGAAAAGATTGAAGCTACAATGGTGAATCTTGCT-CCACGACATTGCAATTAAAAAGATTGAAGA
** * * * * *
49377392 CCACAACGATGAATCTTACTTCTCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACGGTGAATC
260 -CACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATC
* * * ** **
49377457 TTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTT-CTCTGGTA
324 TTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT-TGGCG
* * *
49377521 GTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAA
388 GTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTCCCCAACATTGCAATTAAAA
*
49377582 ATATTGAAGCCACAACGGTGAATCT
1 AGATTGAAGCCACAACGGTGAATCT
49377607 TACTTCCCTG
Statistics
Matches: 6452, Mismatches: 2307, Indels: 517
0.70 0.25 0.06
Matches are distributed among these distances:
434 6 0.00
435 185 0.03
436 173 0.03
437 2 0.00
440 1 0.00
442 1 0.00
444 1 0.00
445 1 0.00
447 20 0.00
448 752 0.12
449 3890 0.60
450 1067 0.17
451 30 0.00
452 1 0.00
453 1 0.00
458 3 0.00
459 1 0.00
461 2 0.00
464 1 0.00
466 5 0.00
471 4 0.00
472 1 0.00
473 12 0.00
474 240 0.04
475 47 0.01
476 5 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (448 bp):
AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
CGATGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAATCTTACTTCTCTGGCAGTGCAGT
GGAAAAGATTGAAGCTACAATGGTGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGAC
ACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTT
GTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTG
CAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTCCCCAACATTGCAATTAAAA
Found at i:49376996 original size:199 final size:199
Alignment explanation
Indices: 49376685--49377357 Score: 956
Period size: 199 Copynumber: 3.4 Consensus size: 199
49376675 GTAATTAAAA
* * * * *
49376685 AGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * *
49376750 CGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
65 CGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTT
* * * ** *
49376815 CCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAAAATTACTT-CTCTGGCAGTGCAG
130 CCCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT-TGGCGGTGCAG
49376879 TGGAAC
194 TGGAAC
* * *
49376885 AGATTGAAGCTACAATGGTGAATCTTGCTTCACGACATTGCAATTAAAAATATTGAAGCCACAAC
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
* * * *
49376950 GGCGAATCTTATTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTTC
66 GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC
*
49377015 CCCAACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTG
131 CCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTG
*
49377080 GAAT
196 GAAC
* * *
49377084 AGATTGAAACTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
49377149 TGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTT
65 CGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTT
49377214 CCCCGACATTACAATT-AAAAGATTGAAGCCACAACT-GTGAATCTTACTTCCTTGGCGGTGCAG
130 CCCCGACATTACAATTAAAAAGATTGAAGCCACAA-TGGTGAATCTTACTTCCTTGGCGGTGCAG
49377277 TGGAAC
194 TGGAAC
* * *
49377283 AGATTGAAGCTACAATGGTGAATCTTGTTTCGCCGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACGGTGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAA
49377348 CGGTGAATCT
65 CGGTGAATCT
49377358 GGCTCCCCCG
Statistics
Matches: 420, Mismatches: 49, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
199 291 0.69
200 129 0.31
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (199 bp):
AGATTGAAGCTACAACGGTGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
GGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC
CCCGACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTG
GAAC
Found at i:49377513 original size:349 final size:349
Alignment explanation
Indices: 49376984--49377706 Score: 1045
Period size: 349 Copynumber: 2.1 Consensus size: 349
49376974 GTAGTGGAGC
* * * *
49376984 AGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCAACATTACAATTAAAAAGATTGAAACCACAA
* * * *
49377049 TGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAACTACAACGGCGAATCTTGCTT
66 CGATGAATCTTACTTCCTTGGCGGTGAAGTGGAACAGATTGAAACTACAACGGCGAATCTTGCTT
* ** *
49377114 CCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGT
131 CCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCAGT
* * *
49377179 GGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATT-AAAAGATTGAAGC
196 GGAATAGATTGAAGCTACAACGATGAATCTGGC-TCCACGACATTACAATTAAAAAGATTGAAGC
* * *
49377243 CACAACTGTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT
* * * * *
49377308 TGTTTCGCCGACATTGTAATTAAAA
325 GGCTTCCCCGACATAGCAATTAAAA
*
49377333 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCAACATTACAATTAAAAAGATTGAAACCACAA
* ** * *
49377398 CGATGAATCTTACTT-CTCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGTT
66 CGATGAATCTTACTTCCT-TGGCGGTGAAGTGGAACAGATTGAAACTACAACGGCGAATCTTGCT
* * * *
49377462 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAG
130 TCCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCAG
* * * *
49377527 TGGAATAGATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAATATTGAAGC
195 TGGAATAGATTGAAGCTACAACGATGAATCTGGCTCCACGACATTACAATTAAAAAGATTGAAGC
* *
49377592 CACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT
49377657 GGCTTCCCCGACATAGCAATTAAAA
325 GGCTTCCCCGACATAGCAATTAAAA
* *
49377682 AGATTGTAGCCACAATGGTGAATCT
1 AGATTGAAGCCACAACGGTGAATCT
49377707 TACTTCCTTG
Statistics
Matches: 331, Mismatches: 41, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
348 17 0.05
349 314 0.95
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (349 bp):
AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCAACATTACAATTAAAAAGATTGAAACCACAA
CGATGAATCTTACTTCCTTGGCGGTGAAGTGGAACAGATTGAAACTACAACGGCGAATCTTGCTT
CCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCAGT
GGAATAGATTGAAGCTACAACGATGAATCTGGCTCCACGACATTACAATTAAAAAGATTGAAGCC
ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTG
GCTTCCCCGACATAGCAATTAAAA
Found at i:49377825 original size:299 final size:296
Alignment explanation
Indices: 49376073--49377857 Score: 1183
Period size: 299 Copynumber: 6.0 Consensus size: 296
49376063 AACGGTAAAT
*** * * * ** *
49376073 ATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAG
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
* * * * *
49376138 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAACA
66 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACA-TGCAATTAAAAAGATTGAAGCCACAACG
* * * ** * * *
49376203 GCGAATCTTACTTCTCTGGTGGTGCAATGGAGCTGATTGAAGCTACAACGATGAATCTGGCTCCC
130 GCGAATCTTACTTCCCTGGCGGTGCAATGGAACAAATTGAAGCTACAACGGTGAATCTTGCT-TC
* * * * *
49376268 CCGACCTTGCAATTAAAAAGATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGG
194 CTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
*
49376333 AGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGAC
259 AACAGATTGAAGCTACAACGGTGAATCTTG-TTCCC-GAC
* * * * * * * * *
49376373 ATTGTAATTAAAAATATTGAAGCCACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAG
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
* ** * * *
49376438 ATTGAA-CCTACAATGGCAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGACACAAC
66 ATTGAAGCC-ACAACGGTGAATCTTGCTTCCCCGACA-TGCAATTAAAAAGATTGAAGCCACAAC
* * * * * * * * * *
49376501 GGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTTTC
129 GGCGAATCTTACTTCCCTGGCGGTGCAATGGAACAAATTGAAGCTACAACGGTGAATCTTGCTT-
* * * * * * * *
49376566 CCCGACATTTCAATTAAAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTAGCGGTGCAGTG
193 CCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTG
* *
49376631 GAACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCAAC
258 GAACAGATTGAAGCTACAACGGTGAATCTTG-TT-CCCGAC
* ** * * * * *
49376672 ATTGTAATTAAAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATTAAAAAG
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
* * * * * * * * ** * *
49376737 ATTGAAGCCACAACGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
66 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATGCAATTAAAAAGATTGAAGCCACAACG
* ** * ** * * * * ** *
49376802 GTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAATATTGAAGCCACAATGGTGAAAATTACTTC
130 GCGAATCTTACTTCCCTGGCGGTGCAATGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTTC
* * * ** * * * * * * * * * *
49376866 TCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCAC-GACATTGCAATT
194 -CTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTG
* * * * * * *
49376930 AAAAATATTGAAGCCACAACGGCGAATCTTATTTCCCTGGC
258 GAACAGATTGAAGCTACAACGGTGAATCTT-GTTCCC-GAC
** * ** ** * * ** * * *
49376971 GGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAG
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
* * ** * * * ** * * *
49377036 ATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAACTACAACG
66 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATGCAATTAAAAAGATTGAAGCCACAACG
* * * ** * * * * * *
49377101 GCGAATCTTGCTTCCCAGACATTGCAAT-TAAAAAGATTAAAGCCACAATGGTGAATCTTACTTC
130 GCGAATCTTACTTCCCTGGCGGTGCAATGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTT-
* ** * ** * * * * ** ** * * * * *
49377165 CCTGGCGGTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAAT-
193 CCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTG
* * * * * * *
49377229 TAAAAGATTGAAGCCACAACTGTGAATCTTACTTCCTTGGC
258 GAACAGATTGAAGCTACAACGGTGAATCTT-GTTCC-CGAC
** * * ** * * * ** * * *
49377270 GGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GACATTGTAATTAAAAA
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGACAGTGCAATGAAAAA
* * * *
49377334 GATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAACCACAAC
65 GATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACA-TGCAATTAAAAAGATTGAAGCCACAAC
** * * * * *
49377399 GATGAATCTTACTTCTCTGGTGGTG-AAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGTTT
129 GGCGAATCTTACTTCCCTGGCGGTGCAA-TGGAACAAATTGAAGCTACAACGGTGAATCTTGCTT
* ** * *
49377463 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGT
193 -CCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGT
* *
49377528 GGAATAGATTGAAGCTACAACGGTGAATCTTGCTCCACGAC
257 GGAACAGATTGAAGCTACAACGGTGAATCTTGTTCC-CGAC
* * * * * * * **
49377569 ATTGCAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAG
1 ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
* * * *
49377634 ATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATAGCAATTAAAAAGATTGTAGCCACAATG
66 ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACAT-GCAATTAAAAAGATTGAAGCCACAACG
* * * *
49377699 GTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTGCTTCC
130 GCGAATCTTACTTCCCTGGCGGTGCAATGGAACAAATTGAAGCTACAACGGTGAATCTTGCTTCC
49377764 TAGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
195 T-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
* * *
49377829 AACAAATTGAAGCTATAACGATGAATCTT
259 AACAGATTGAAGCTACAACGGTGAATCTT
49377858 ACTTGCCTGA
Statistics
Matches: 1181, Mismatches: 282, Indels: 45
0.78 0.19 0.03
Matches are distributed among these distances:
298 11 0.01
299 944 0.80
300 226 0.19
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (296 bp):
ATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGACAGTGCAATGAAAAAG
ATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATGCAATTAAAAAGATTGAAGCCACAACGG
CGAATCTTACTTCCCTGGCGGTGCAATGGAACAAATTGAAGCTACAACGGTGAATCTTGCTTCCT
GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAA
CAGATTGAAGCTACAACGGTGAATCTTGTTCCCGAC
Found at i:49377841 original size:349 final size:349
Alignment explanation
Indices: 49376984--49377816 Score: 931
Period size: 349 Copynumber: 2.4 Consensus size: 349
49376974 GTAGTGGAGC
* * * * * *
49376984 AGATTGAAGCTACAACGGTGAATCTTG-CTTCCCCAACATTACAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGTGAATC-TGACTCCCCCGACAGTACAATGAAAAAGATTGAAACCACA
* ** * * * * * *
49377048 ATGGTGAATCTTACTTC-CTTGGCGGTGCAGTGGAATAGATTGAAACTACAACGGCGAATCTTGC
65 ACGACGAATCTTACTTCTC-TGACAGTGAAGTGAAAAAGATTGAAGCTACAACGGCGAATCTTGC
* * * ** *
49377112 TTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCA
* * *
49377177 GTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATTAAAAGATTGAAG
194 GTGGAATAGATTGAAGCTACAACGATGAATCTGGCTTCCACGACATTACAATTAAAAGATTGAAG
* * *
49377242 CCACAACTGTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC
* * * * *
49377307 TTGTTTCGCCGACATTGTAATTAAAA
324 TGGCTTCCCCGACATAGCAATTAAAA
* * *
49377333 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAACCACAA
1 AGATTGAAGCCACAACGGTGAATCTGACTCCCCCGACAGTACAATGAAAAAGATTGAAACCACAA
* *** * * * * *
49377398 CGATGAATCTTACTTCTCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGTTT
66 CGACGAATCTTACTTCTCTGACAGTGAAGTGAAAAAGATTGAAGCTACAACGGCGAATCTTGCTT
* *
49377463 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCAGT
* * * *
49377528 GGAATAGATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATTAAAAATATTGAAGC
196 GGAATAGATTGAAGCTACAACGATGAATCTGGCTTCCACGACATTACAATT-AAAAGATTGAAGC
* *
49377592 CACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT
49377657 GGCTTCCCCGACATAGCAATTAAAA
325 GGCTTCCCCGACATAGCAATTAAAA
* * * * ** * * * * * * *
49377682 AGATTGTAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
1 AGATTGAAGCCACAACGGTGAATCTGACTCCCCCGACAGTACAAT-GAAAAAGATTGAAACCACA
* * * * * *
49377746 ACGGCGAATCTTGCTTC-CTAGACATTGCAA-TTAAAAAGATTGAAGCCACAACGGCGAATCTTA
65 ACGACGAATCTTACTTCTCT-GACAGTG-AAGTGAAAAAGATTGAAGCTACAACGGCGAATCTTG
49377809 CTTCCCTG
128 CTTCCCTG
49377817 GCAGTGCAGT
Statistics
Matches: 409, Mismatches: 69, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
348 19 0.05
349 383 0.94
350 7 0.02
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (349 bp):
AGATTGAAGCCACAACGGTGAATCTGACTCCCCCGACAGTACAATGAAAAAGATTGAAACCACAA
CGACGAATCTTACTTCTCTGACAGTGAAGTGAAAAAGATTGAAGCTACAACGGCGAATCTTGCTT
CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCCCTGGCAGTGCAGT
GGAATAGATTGAAGCTACAACGATGAATCTGGCTTCCACGACATTACAATTAAAAGATTGAAGCC
ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTG
GCTTCCCCGACATAGCAATTAAAA
Found at i:49377886 original size:100 final size:100
Alignment explanation
Indices: 49376073--49377890 Score: 1164
Period size: 100 Copynumber: 18.2 Consensus size: 100
49376063 AACGGTAAAT
* *** * * * *
49376073 ATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGTATAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
*
49376138 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * ** * * **
49376173 ATTGCAATTAAAATGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGTGGTGCAATGGAGCTG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * *
49376238 ATTGAAGCTACAACGATGAATCTGGCTCCCCCGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * * * *
49376273 CTTGCAATTAAAAAGATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
*
49376338 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * * * * *
49376373 ATTGTAATTAAAAATATTGAAGCCACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * **
49376438 ATTGAACCTACAATGGCAAATCTTGC-TCCAC-GAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGAC
* * ** * * * *
49376472 ATTGTAATTAAAAAGATTGAAGACACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * * * *
49376537 ATTAAAGCTATAACGGCGAATCTGGTTTCCCCGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * * * *
49376572 ATTTCAATTAAAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTAGCGGTGCAGTGGAACAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * **
49376637 ATTGAAGCTACAATGGTGAATCTTGTTTCCCCAAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * ** * * * * * * * *
49376672 ATTGTAATTAAAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAAT-TAAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * * * *
49376736 GATTGAAGCCACAACGATGAATCTTACATCTCTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
** * ** * * ** * * * * *
49376772 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * ** * * *
49376836 TATTGAAGCCACAATGGTGAAAATTACTTCTCTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * ** * * * * * * * * * *
49376872 AGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCAC-GACATTGCAAT-TAAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * ** *
49376935 TATTGAAGCCACAACGGCGAATCTTATTTCCCTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
** * * ** ** * * *** * * * * *
49376971 GGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAAT-TAAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * * *
49377035 GATTGAAGCCACAATGGTGAATCTTACTTCCTTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
** * ** * * * * * * * * * * *
49377071 GGTGCAGTGGAATAGATTGAAACTACAACGGCGAATCTTGCTTCCCAGACATTGCAAT-TAAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * * *
49377135 GATTAAAGCCACAATGGTGAATCTTACTTCCCTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
** * ** * * * * * ** * * * * * *
49377171 GGTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAAT-TAA-AA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * * *
49377234 GATTGAAGCCACAACTGTGAATCTTACTTCCTTGGC
66 -ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
** * ** * * * ** * * * * * *
49377270 GGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GACATTGTAAT-TAAAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCAGTGCAGTGGAACA
* * * *
49377333 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGAC
65 A-ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * ** * *
49377370 ATTACAATTAAAAAGATTGAAACCACAACGATGAATCTTACTTCTCTGGTGGTGAAGTGGAACAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* *
49377435 ATTGAAGTTACAACGGTGAATCTTGTTTCCCTGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * ** * * * *
49377470 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGTGGAATAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
49377535 ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGAC
* * * * *
49377569 ATTGCAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAG
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* *
49377634 ATTGAAGCTACAACGGTGAATCTGGCTTCCCCGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* * * * *
49377669 ATAGCAATTAAAAAGATTGTAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAACAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
*
49377734 ATTGAAGCTACAACGGCGAATCTTGCTT-CCTAGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GAC
*
49377769 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
1 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
* * * *
49377834 ATTGAAGCTATAACGATGAATCTTACTTGCCTGAC
66 ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
* **
49377869 ATTGCAGTTAATTAGATTGAAG
1 ATTGCAATTAAAAAGATTGAAG
49377891 ATAGCAAATC
Statistics
Matches: 1444, Mismatches: 260, Indels: 28
0.83 0.15 0.02
Matches are distributed among these distances:
99 346 0.24
100 1092 0.76
101 6 0.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (100 bp):
ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAA
ATTGAAGCTACAACGGTGAATCTTGCTTCCCTGAC
Found at i:49377888 original size:50 final size:48
Alignment explanation
Indices: 49376083--49377890 Score: 570
Period size: 50 Copynumber: 36.2 Consensus size: 48
49376073 ATTGTAATTA
* ** * **
49376083 AAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT--T
* * ** *
49376134 -ATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * **** * *
49376182 AAAATGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGTGGTGCAATGG
1 AAAA-GATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
*** ** ** * * * *
49376233 AGCTGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACCTTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACT-TCCTGACATTGCAGTT
* * * ** * *
49376282 AAAAAGATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
** * ** * *
49376333 AGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * ** *
49376382 AAAAATATTGAAGCCACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
* * * * * * * *
49376433 AATAGATTGAACCTACAATGGCAAATCTTGC-TCCACGACATTGTAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-TGACATTGCAGTT
* * ** * *
49376481 AAAAAGATTGAAGAC-ACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGG
1 -AAAAGATTGAAG-CTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
** * * *** * * *
49376532 AGCAGATTAAAGCTATAACGGCGAATCTGGTTTCCCCGACATTTCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * ** *
49376581 AAAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTAGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCTGA-CATTGCAGT-T
* * * ** ** * *
49376632 AACAGATTGAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * ** * * * *
49376681 AAAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGTAATT
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACT-TCCTGACATTGCAGTT
* ** * * ** *
49376731 AAAAAGATTGAAGCCACAACGATGAATCTTACATCTCTGGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
* * ** *
49376782 AACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * ** * * *
49376831 AAAAATATTGAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
* * * * *
49376882 AACAGATTGAAGCTACAATGGTGAATCTTGCTTCAC-GACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGTT
* * * * ** * *
49376930 AAAAATATTGAAGCCACAACGGCGAATCTTATTTCCCTGGCGGTGTAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
** * * ** * *
49376981 AGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * ** *
49377030 AAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-TGACATTGCAGT-T
* * * * *
49377081 AATAGATTGAAACTACAACGGCGAATCTTGCTTCCCAGACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * * ** *
49377130 AAAAAGATTAAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
* * * ** ** * * *
49377181 AATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * ** *
49377230 AAAAGATTGAAGCCACAACTGTGAATCTTACTTCCTTGGCGGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-TGACATTGCAGT-T
* * * ** * * *
49377280 AACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCCGACATTGTAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGTT
* * ** * * * *
49377329 AAAAAGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATT
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACT-TCCTGACATTGCAGTT
* * ** **** * *
49377379 AAAAAGATTGAAACCACAACGATGAATCTTACTTCTCTGGTGGTGAAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
* * * ** *
49377430 AACAGATTGAAGTTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * ** ** * *
49377479 AAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTC-CTGACATTGCAGT-T
* * * * *
49377530 AATAGATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-TGACATTGCAGTT
* * * * ** * *
49377578 AAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
** * ** * * *
49377629 AGCAGATTGAAGCTACAACGGTGAATCTGGCTTCCCCGACATAGCAATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
* * * * * ** *
49377678 AAAAAGATTGTAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-TGACATTGCAGT-T
* *
49377729 AACAA-ATTGAAGCTACAACGGCGAATCTTGCTTCCTAGACATTGCAATT
1 AA-AAGATTGAAGCTACAACGGCGAATCTTACTTCCT-GACATTGCAGTT
* * * *
49377778 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGG
1 -AAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGT-T
* **
49377829 AACAA-ATTGAAGCTATAACGATGAATCTTACTTGCCTGACATTGCAGTT
1 AA-AAGATTGAAGCTACAACGGCGAATCTTACTT-CCTGACATTGCAGTT
*
49377878 AATTAGATTGAAG
1 AA-AAGATTGAAG
49377891 ATAGCAAATC
Statistics
Matches: 1245, Mismatches: 445, Indels: 135
0.68 0.24 0.07
Matches are distributed among these distances:
48 5 0.00
49 157 0.13
50 1061 0.85
51 22 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (48 bp):
AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCTGACATTGCAGTT
Found at i:49379667 original size:3 final size:3
Alignment explanation
Indices: 49379661--49379723 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
49379651 ATTATTATTT
49379661 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
49379709 ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC
49379724 TTAGTTTTAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:49381318 original size:14 final size:15
Alignment explanation
Indices: 49381293--49381327 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
49381283 TTTAATTTTC
49381293 AAAATTTCAAAAAAA
1 AAAATTTCAAAAAAA
*
49381308 AAAATTT-AAAAATA
1 AAAATTTCAAAAAAA
49381322 AAAATT
1 AAAATT
49381328 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTCAAAAAAA
Found at i:49381357 original size:30 final size:31
Alignment explanation
Indices: 49381323--49381424 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
49381313 TTAAAAATAA
*
49381323 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
49381353 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
49381383 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
49381413 AAATTTCATTTT
1 AAATTTCATTTT
49381425 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:49381801 original size:10 final size:10
Alignment explanation
Indices: 49381782--49381827 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
49381772 AGACTTTGAA
49381782 GAAGAAGAAG
1 GAAGAAGAAG
*
49381792 GAATAAGAAG
1 GAAGAAGAAG
*
49381802 GAAGAAGAAA
1 GAAGAAGAAG
*
49381812 GAGGAAGAAG
1 GAAGAAGAAG
*
49381822 AAAGAA
1 GAAGAA
49381828 AGAAAAAAGA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:49381808 original size:7 final size:7
Alignment explanation
Indices: 49381779--49381845 Score: 52
Period size: 7 Copynumber: 10.0 Consensus size: 7
49381769 GCTAGACTTT
49381779 GAAG-AA
1 GAAGAAA
*
49381785 GAAGAAG
1 GAAGAAA
*
49381792 GAA-TAA
1 GAAGAAA
*
49381798 GAAGGAA
1 GAAGAAA
49381805 GAAGAAA
1 GAAGAAA
*
49381812 G-AGGAA
1 GAAGAAA
49381818 GAAGAAA
1 GAAGAAA
49381825 GAAAGAAA
1 G-AAGAAA
*
49381833 AAAGAAA
1 GAAGAAA
49381840 -AAGAAA
1 GAAGAAA
49381846 AGAAATAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
6 19 0.39
7 24 0.49
8 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (7 bp):
GAAGAAA
Found at i:49381816 original size:13 final size:13
Alignment explanation
Indices: 49381800--49381826 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49381790 AGGAATAAGA
49381800 AGGAAGAAGAAAG
1 AGGAAGAAGAAAG
49381813 AGGAAGAAGAAAG
1 AGGAAGAAGAAAG
49381826 A
1 A
49381827 AAGAAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
AGGAAGAAGAAAG
Found at i:49381819 original size:20 final size:20
Alignment explanation
Indices: 49381782--49381850 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
49381772 AGACTTTGAA
* *
49381782 GAAGAAGAAGGAATAAGAAG
1 GAAGAAGAAAGAAGAAGAAG
*
49381802 GAAGAAGAAAGAGGAAGAAG
1 GAAGAAGAAAGAAGAAGAAG
* * *
49381822 AAAGAAAGAAAAAAGAA-AAA
1 GAAG-AAGAAAGAAGAAGAAG
49381842 GAA-AAGAAA
1 GAAGAAGAAA
49381851 TAATAAAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 6 0.15
20 24 0.60
21 10 0.25
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (20 bp):
GAAGAAGAAAGAAGAAGAAG
Found at i:49381847 original size:18 final size:18
Alignment explanation
Indices: 49381816--49381850 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
49381806 AAGAAAGAGG
49381816 AAGAAGAAAGAAAGAAAA
1 AAGAAGAAAGAAAGAAAA
49381834 AAGAA-AAAGAAAAGAAA
1 AAGAAGAAAG-AAAGAAA
49381851 TAATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAGAAGAAAGAAAGAAAA
Found at i:49382001 original size:23 final size:23
Alignment explanation
Indices: 49381968--49382019 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
49381958 AGCAAAAAAA
*
49381968 AAGCAGCAAAAAGAAGAAGAAAG
1 AAGCAGAAAAAAGAAGAAGAAAG
49381991 AAGCAGAAAAAAGAAGAAGAAAG
1 AAGCAGAAAAAAGAAGAAGAAAG
49382014 AAGCAG
1 AAGCAG
49382020 CCCAAATGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.65, C:0.08, G:0.27, T:0.00
Consensus pattern (23 bp):
AAGCAGAAAAAAGAAGAAGAAAG
Found at i:49382147 original size:8 final size:8
Alignment explanation
Indices: 49382128--49382182 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 8
49382118 CAGCCCAGCA
49382128 AAAAAAAG
1 AAAAAAAG
49382136 AGAAAAAA-
1 A-AAAAAAG
*
49382144 AGAAAAAG
1 AAAAAAAG
*
49382152 AGAAAAAG
1 AAAAAAAG
49382160 -AAAAAAG
1 AAAAAAAG
49382167 AAAAAACAAG
1 -AAAAA-AAG
49382177 AAAAAA
1 AAAAAA
49382183 GAGGCTCAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
7 11 0.28
8 11 0.28
9 15 0.38
10 3 0.08
ACGTcount: A:0.84, C:0.02, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:49382157 original size:14 final size:14
Alignment explanation
Indices: 49382130--49382171 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
49382120 GCCCAGCAAA
49382130 AAAAAGAGAAAAAAAG
1 AAAAAGAG--AAAAAG
49382146 AAAAAGAGAAAAAG
1 AAAAAGAGAAAAAG
49382160 AAAAA-AGAAAAA
1 AAAAAGAGAAAAA
49382172 ACAAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.27
14 11 0.42
16 8 0.31
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAAAAAG
Found at i:49382172 original size:14 final size:15
Alignment explanation
Indices: 49382127--49382185 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 15
49382117 CCAGCCCAGC
49382127 AAAAAAAAGAGAAAA
1 AAAAAAAAGAGAAAA
49382142 AAAGAAAAAGAGAAAA
1 AAA-AAAAAGAGAAAA
* *
49382158 AGAAAAAAGAAAAAA
1 AAAAAAAAGAGAAAA
49382173 CAAGAAAAAAGAG
1 -AA-AAAAAAGAG
49382186 GCTCAATTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 14 0.38
16 15 0.41
17 8 0.22
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAGAAAA
Found at i:49382184 original size:7 final size:8
Alignment explanation
Indices: 49382130--49382172 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
49382120 GCCCAGCAAA
49382130 AAAAAGAG
1 AAAAAGAG
*
49382138 AAAAAAAG
1 AAAAAGAG
49382146 AAAAAGAG
1 AAAAAGAG
49382154 AAAAAGA-
1 AAAAAGAG
49382161 AAAAAGA-
1 AAAAAGAG
49382168 AAAAA
1 AAAAA
49382173 CAAGAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 12 0.36
8 21 0.64
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAAGAG
Found at i:49382321 original size:6 final size:6
Alignment explanation
Indices: 49382310--49382368 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
49382300 AATTTTATGC
* *
49382310 ATATTT ATATTT ATATTT ATATTT TTAATTT A-ATTT GATTTTT AT-TTT
1 ATATTT ATATTT ATATTT ATATTT AT-ATTT ATATTT -ATATTT ATATTT
49382358 AT-TTT AT-TTT A
1 ATATTT ATATTT A
49382369 AATAATTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
5 18 0.38
6 22 0.47
7 7 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (6 bp):
ATATTT
Found at i:49382356 original size:16 final size:17
Alignment explanation
Indices: 49382330--49382367 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
49382320 TTATATTTAT
49382330 ATTTTTAATTTAATTTG
1 ATTTTTAATTTAATTTG
* *
49382347 ATTTTT-ATTTTATTTT
1 ATTTTTAATTTAATTTG
49382363 ATTTT
1 ATTTT
49382368 AAATAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTAATTTAATTTG
Found at i:49382564 original size:18 final size:18
Alignment explanation
Indices: 49382520--49383038 Score: 281
Period size: 17 Copynumber: 29.8 Consensus size: 18
49382510 TCAATAATCC
*
49382520 TCGTGCTTTT-AAAAATTC
1 TCGTG-TTTTCAAAAATTT
* *
49382538 TCATG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
*
49382555 TCGTGTTTTC-AAAATTC
1 TCGTGTTTTCAAAAATTT
*
49382572 TAGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
*
49382589 TCTTGTTTTCAGAAAAAATTT
1 TCGTGTTTTC---AAAAATTT
*
49382610 TCGTGTTTT-ATAAATTT
1 TCGTGTTTTCAAAAATTT
* * **
49382627 CCGTATTTTCAAAAA-AA
1 TCGTGTTTTCAAAAATTT
*
49382644 TCATGTCTTTCAAAAATTT
1 TCGTGT-TTTCAAAAATTT
**
49382663 TCGTGTTTTCAAAAAAAATGA
1 TCGTGTTTTC---AAAAATTT
*
49382684 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
* *** *
49382701 CCGTGTTAAAAAAAATCT
1 TCGTGTTTTCAAAAATTT
*
49382719 TCGTATTTTCAAAAAATTT
1 TCGTGTTTTC-AAAAATTT
*
49382738 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
49382755 TCGTGTTTTCAAAAA-TT
1 TCGTGTTTTCAAAAATTT
*
49382772 TCG-GTGTTTCAAAGATTT
1 TCGTGT-TTTCAAAAATTT
*
49382790 TCGTGTTTTCAAAAA-CT
1 TCGTGTTTTCAAAAATTT
* * ***
49382807 CCGGTGATTTTAAAAAAAAA
1 TC-GTG-TTTTCAAAAATTT
*
49382827 TCGT-TTTCTAAAAAATTT
1 TCGTGTTT-TCAAAAATTT
*
49382845 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
49382862 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
*
49382879 TCGTGTTTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
*
49382896 TCGTATTTT---AAATTT
1 TCGTGTTTTCAAAAATTT
*** *
49382911 T--T-TTAAGAAAAA-AT
1 TCGTGTTTTCAAAAATTT
* *
49382925 T-GTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
* *
49382941 TCTTGTTTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
* *
49382958 TCGTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
49382975 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
**
49382992 TCGTGTTTT-TGAAATTT
1 TCGTGTTTTCAAAAATTT
* *
49383009 CCGTG-TTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
49383025 TCGTGTTTT-AAAAA
1 TCGTGTTTTCAAAAA
49383039 AAACTTTCAT
Statistics
Matches: 384, Mismatches: 81, Indels: 73
0.71 0.15 0.14
Matches are distributed among these distances:
12 2 0.01
13 1 0.00
14 2 0.01
15 16 0.04
16 25 0.07
17 186 0.48
18 92 0.24
19 29 0.08
20 5 0.01
21 26 0.07
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTT
Found at i:49382582 original size:16 final size:16
Alignment explanation
Indices: 49382531--49382584 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
49382521 CGTGCTTTTA
49382531 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
49382547 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
49382565 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
49382581 AAAA
1 AAAA
49382585 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:49382661 original size:36 final size:38
Alignment explanation
Indices: 49382621--49382704 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 38
49382611 CGTGTTTTAT
*
49382621 AAATTTCCGTATTTTC-AAAAAAATCA-TGTCTTTCAA
1 AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
* * * *
49382657 AAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAA
1 AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
49382695 AAATTTCCGT
1 AAATTTCCGT
49382705 GTTAAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 14 0.35
37 9 0.22
38 17 0.43
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (38 bp):
AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
Found at i:49382672 original size:74 final size:73
Alignment explanation
Indices: 49382577--49382779 Score: 209
Period size: 74 Copynumber: 2.8 Consensus size: 73
49382567 AATTCTAGTG
* * * * *
49382577 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAATCTTCGTGTTTTAAAAATTTCCG--TGTTAAAAAA
49382642 AATCAT-GT-C
63 AATCATCGTAC
*** *
49382651 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAATCTTCGTGTTTTAAAAATTTCCGTGTTAAAAAAAA
* *
49382716 TCTTCGTAT
65 TCATCGTAC
*
49382725 TTTCAAAAAATTTTCGTG-TTTC--AAAAATCTTCGTGTTTTCAAAAATTTCGGTGTT
1 TTTC-AAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTT-AAAAATTTCCGTGTT
49382780 TCAAAGATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
71 13 0.12
72 27 0.25
73 2 0.02
74 53 0.49
75 14 0.13
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (73 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTTAAAAATTTCCGTGTTAAAAAAAAT
CATCGTAC
Found at i:49382733 original size:54 final size:55
Alignment explanation
Indices: 49382655--49382761 Score: 137
Period size: 54 Copynumber: 1.9 Consensus size: 55
49382645 CATGTCTTTC
* *
49382655 AAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAAT-TTCCGTGTTAAA
1 AAAAATCTTCGTATTTTC-AAAAAAATGACCGTGTTTCAAAAATCTT-CGTGTTAAA
***
49382711 AAAAATCTTCGTATTTTC-AAAAAATTTTCGTGTTTCAAAAATCTTCGTGTT
1 AAAAATCTTCGTATTTTCAAAAAAATGACCGTGTTTCAAAAATCTTCGTGTT
49382762 TTCAAAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
54 27 0.60
55 2 0.04
56 16 0.36
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (55 bp):
AAAAATCTTCGTATTTTCAAAAAAATGACCGTGTTTCAAAAATCTTCGTGTTAAA
Found at i:49382988 original size:51 final size:49
Alignment explanation
Indices: 49382675--49383039 Score: 167
Period size: 54 Copynumber: 7.1 Consensus size: 49
49382665 GTGTTTTCAA
* * * *
49382675 AAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAATCTTCGTATTTT
1 AAAAAATG-TCGTGTTTTAAAAATTTCCGTGTT-TAAAAAA--TTCGTGTTTT
* * * *
49382728 CAAAAAATTTTCGTGTTTCAAAAATCTT-CGTGTTTTCAAAAATTTCGGTGTTTC
1 -AAAAAA-TGTCGTGTTTTAAAAAT-TTCCGTG-TTT-AAAAAATTC-GTGTTTT
* * * * *
49382782 AAAGATTTTCGTGTTTTCAAAAA-CTCCGGTGATTTTAAAAAAAAATCGT-TTTCT
1 AAAAAATGTCGTGTTTT-AAAAATTTCC-GTG--TTT--AAAAAATTCGTGTTT-T
* * * *
49382836 AAAAAATTTCCGTGTTTCAAAAATTTTCGTGTTTTAAAAATTTTCGTGTTTT
1 AAAAAATGT-CGTGTTTTAAAAATTTCCGTG-TTTAAAAA-ATTCGTGTTTT
* * * *
49382888 AAAAATTCTCGTATTTT--AAATTT---T-TTTAAGAAAAAATT-GTGTTTC
1 AAAAAATGTCGTGTTTTAAAAATTTCCGTGTTT---AAAAAATTCGTGTTTT
*
49382933 AAAAAATGTCTTGTTTTAAAAA-TTCTCGTGTTTCAAAAAATGTCGTGTTTT
1 AAAAAATGTCGTGTTTTAAAAATTTC-CGTGTTT-AAAAAAT-TCGTGTTTT
* * ** *
49382984 AAAAATTTTCGTGTTTTTGAAATTTCCGTGTTTAAAAATTCTCGTGTTTT
1 AAAAAATGTCGTGTTTTAAAAATTTCCGTGTTTAAAAAAT-TCGTGTTTT
49383034 AAAAAA
1 AAAAAA
49383040 AACTTTCATT
Statistics
Matches: 242, Mismatches: 41, Indels: 60
0.71 0.12 0.17
Matches are distributed among these distances:
44 3 0.01
45 19 0.08
46 5 0.02
47 8 0.03
49 13 0.05
50 22 0.09
51 45 0.19
52 26 0.11
53 25 0.10
54 50 0.21
55 26 0.11
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (49 bp):
AAAAAATGTCGTGTTTTAAAAATTTCCGTGTTTAAAAAATTCGTGTTTT
Found at i:49395245 original size:46 final size:45
Alignment explanation
Indices: 49395139--49396134 Score: 554
Period size: 44 Copynumber: 22.6 Consensus size: 45
49395129 TATTTAATCC
* *
49395139 GCTCCACTGTAA-CTTCAGGGAGATAGGA--T-AGTGTCTTCGATCT
1 GCTCCACTGTAATC-TCAGGGAGATAAGATCTAAAT-TCTTCGATCT
* * *
49395182 GCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTGCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
* * * ** * *
49395228 ACTCCACTGTAACCTCAGGGAGATAAGACCTCCA-GCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
* * * * *
49395272 GATCCACTGTAACCTCAGGGAGATAAGATCTGAATTTCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
* * * * * *
49395318 ACTCCACTGTAACCTCAGGGAAATAAGATCT--CTGGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAAT-TCTTCGATCT
* *
49395362 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
* * ** *
49395408 GTTCCACTGTAATCTCAGGGAAATAAGA-C---ATGGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
* * * * * * *
49395449 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTAGTT-TT-AATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAATTCTTCGATCT
* * * * *
49395493 GCTCCACTGTAATATCAGGGAGATAGGAT-T-ACTAGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAAT-TCTTCGATCT
* * *
49395537 ACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
* * * ** *
49395583 GTTCCACTGTAATCTCAGGGAAATAAGA-C---CTGGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
* * * * * * *
49395624 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTAGTT-TT-AATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAATTCTTCGATCT
* * * * *
49395668 GCTCCACTGTAATATCAGGGAGATAGGAT-T-ACTAGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAAT-TCTTCGATCT
* *
49395712 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
** *
49395758 GCTCCACTGTAATCTCAGGGAGATAAGA-CT---TGGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
* * * * * *
49395799 ACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TATT-TT-AATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGAT-CTAAATTCTTCGATCT
* * * * *
49395842 ACTCCACTGTAATCTCAAGGAGATAGGAT-T-ACTATCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAAT-TCTTCGATCT
*
49395886 GCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGATCT
* * * ** *
49395932 GTTCCACTGTAATCTCAGGGAAATAAGA-C---CTGGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
* * * *** * *
49395973 ACTCTACTGTAA-CTTCAGAGAGATAAGATCATTGGTT-TT-AATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGATC-TAAATTCTTCGATCT
* *
49396017 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACCATAT-TT-GATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCTA-AAT-TCTTCGATCT
* * * *
49396061 GCTCCGCTGTAATCTCAGGGAGATAGGATTTGCAATTCTTC-AGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGATCT-AAATTCTTCGA-TCT
49396107 GCTCCACTGTAATCTCAGGGAGATAAGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA
49396135 CCTGTATAAT
Statistics
Matches: 726, Mismatches: 164, Indels: 123
0.72 0.16 0.12
Matches are distributed among these distances:
40 4 0.01
41 121 0.17
42 5 0.01
43 62 0.09
44 272 0.37
45 21 0.03
46 232 0.32
47 9 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
GCTCCACTGTAATCTCAGGGAGATAAGATCTAAATTCTTCGATCT
Found at i:49395296 original size:90 final size:89
Alignment explanation
Indices: 49395139--49396135 Score: 721
Period size: 90 Copynumber: 11.3 Consensus size: 89
49395129 TATTTAATCC
* * * * *
49395139 GCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAATCTCAGG
1 GCTCCACTGTAATC-TCAGGGAGATAAGACT-CTAG-CTTCAATCTGATCCACTGTAATCTCAGG
* *
49395201 GAGATAAGATCTAAAATTCTGCGGTCT
63 GAGATAAGATCTGAAATTCTTCGGTCT
* * * *
49395228 ACTCCACTGTAACCTCAGGGAGATAAGACCTCCAGCTTCAATCTGATCCACTGTAACCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTCTAGCTTCAATCTGATCCACTGTAATCTCAGGGA
* *
49395293 GATAAGATCTGAATTTCTTTGGTCT
65 GATAAGATCTGAAATTCTTCGGTCT
* * * * * *
49395318 ACTCCACTGTAACCTCAGGGAAATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTCTAGCTTCAATCTGATCCACTGTAATCTCAGGGA
49395383 GATAAGATCTGAAATTCTTCGGTCT
65 GATAAGATCTGAAATTCTTCGGTCT
* * * * * * * *
49395408 GTTCCACTGTAATCTCAGGGAAATAAGAC-AT-GGTGCGATCT-ACTCTACTGTAA-CTTCAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTAGCTTCAATCTGA-TCCACTGTAATC-TCAGGG
* * ** *
49395469 AGATAAGATCCT-TAGTT-TT-AATCC
64 AGATAAGAT-CTGAAATTCTTCGGTCT
* * * *
49395493 GCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCT-ACTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CTAGCTTCAATCTGA-TCCACTGTAATCTCAGGG
49395557 AGATAAGATCTGAAATTCTTCGGTCT
64 AGATAAGATCTGAAATTCTTCGGTCT
* * * * * * *
49395583 GTTCCACTGTAATCTCAGGGAAATAAGAC-CT-GGTGCGATCT-ACTCTACTGTAA-CTTCAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTAGCTTCAATCTGA-TCCACTGTAATC-TCAGGG
* * ** *
49395644 AGATAAGATCCT-TAGTT-TT-AATCC
64 AGATAAGAT-CTGAAATTCTTCGGTCT
* * * * *
49395668 GCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CTAGCTTCAATCTGATCCACTGTAATCTCAGGGA
49395733 GATAAGATCTGAAATTCTTCGGTCT
65 GATAAGATCTGAAATTCTTCGGTCT
* * * * *
49395758 GCTCCACTGTAATCTCAGGGAGATAAGACT-T-GGTGCGATCT-ACTCTACTGTAA-CTTCAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTAGCTTCAATCTGA-TCCACTGTAATC-TCAGGG
* ** *
49395819 AGATAAGATCCT--TATT-TT-AATCC
64 AGATAAGAT-CTGAAATTCTTCGGTCT
* * * * * *
49395842 ACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CTAGCTTCAATCTGATCCACTGTAATCTCAGGGA
49395907 GATAAGATCTGAAATTCTTCGGTCT
65 GATAAGATCTGAAATTCTTCGGTCT
* * * * * * *
49395932 GTTCCACTGTAATCTCAGGGAAATAAGAC-CT-GGTGCGATCT-ACTCTACTGTAA-CTTCAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTAGCTTCAATCTGA-TCCACTGTAATC-TCAGGG
* ** *
49395993 AGATAAGATCATTG--GTT-TT-AATCC
64 AGATAAGATC--TGAAATTCTTCGGTCT
* * * ** ** * *
49396017 GCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTTGATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CTAGCTTCAATCTGATCCACTGTAATCTCAGGGA
* * * *
49396082 GATAGGATTTGCAATTCTTCAGTCT
65 GATAAGATCTGAAATTCTTCGGTCT
49396107 GCTCCACTGTAATCTCAGGGAGATAAGAC
1 GCTCCACTGTAATCTCAGGGAGATAAGAC
49396136 CTGTATAATG
Statistics
Matches: 706, Mismatches: 153, Indels: 97
0.74 0.16 0.10
Matches are distributed among these distances:
84 28 0.04
85 81 0.11
86 18 0.03
87 164 0.23
88 111 0.16
89 38 0.05
90 264 0.37
91 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (89 bp):
GCTCCACTGTAATCTCAGGGAGATAAGACTCTAGCTTCAATCTGATCCACTGTAATCTCAGGGAG
ATAAGATCTGAAATTCTTCGGTCT
Found at i:49395572 original size:175 final size:175
Alignment explanation
Indices: 49395068--49396138 Score: 1485
Period size: 175 Copynumber: 6.1 Consensus size: 175
49395058 TACTGCAACG
* * * * * *
49395068 TCAGGGAGATAAGACTTGATGCGAACTTGCTCTGCTGTAACTTTAGAGAGATAAGATCCTT--TA
1 TCAGGGAGATAAGACCTGGTGCGATC-TACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGT-
* *
49395131 TTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTA
64 TTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTA
* * * *
49395193 ATCTCAGGGAGATAAGATCTAAAATTCTGCGGTCTACTCCACTGTAACC
127 ATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* * * * * * *
49395242 TCAGGGAGATAAGACCTCCAGCTTCAATCTGA-TCCACTGTAACCTCAGGGAGATAAGAT-CTGA
1 TCAGGGAGATAAGACCT---GGTGCGATCT-ACTCTACTGTAACTTCAGAGAGATAAGATCCT-T
* ** ** * * * *
49395305 ATTTCTTTGGTCTACTCCACTGTAACCTCAGGGAAATAAGATCT-CTGGCTTCAATCTGCTCCGC
61 A-GT-TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGC
*
49395369 TGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
123 TGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* *
49395422 TCAGGGAAATAAGACATGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
* *
49395487 TAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCT
66 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
*
49395552 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
131 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
*
49395597 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
*
49395662 TAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
66 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
49395727 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
131 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
*
49395772 TCAGGGAGATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTA-TTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
* * * *
49395836 TAATCCACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCT
66 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
*
49395901 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
131 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* * *
49395946 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTGGTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
* ** **
49396011 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTTGATCTGCTCCGCTGTAATCT
66 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
* * * *
49396076 CAGGGAGATAGGATTTGCAATTCTTCAGTCTGCTCCACTGTAATC
131 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
49396121 TCAGGGAGATAAGACCTG
1 TCAGGGAGATAAGACCTG
49396139 TATAATGAAC
Statistics
Matches: 807, Mismatches: 74, Indels: 31
0.88 0.08 0.03
Matches are distributed among these distances:
174 181 0.22
175 451 0.56
176 25 0.03
177 37 0.05
178 2 0.00
179 29 0.04
180 80 0.10
181 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (175 bp):
TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
Found at i:49395991 original size:349 final size:349
Alignment explanation
Indices: 49395068--49396135 Score: 1527
Period size: 349 Copynumber: 3.0 Consensus size: 349
49395058 TACTGCAACG
* * * * *
49395068 TCAGGGAGATAAGACTTGATGCGAACTTGCTCTGCTGTAACTTTAGAGAGATAAGATCCTT-TAT
1 TCAGGGAGATAAGACTTGGTGCGATC-TACTCTACTGTAACTTCAGAGAGATAAGATCCTTAT-T
* * *
49395132 TTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAAT
64 TTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAAT
* * ** * *
49395195 CTCAGGGAGATAAGATCTAAAATTCTGCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTC
128 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCT-
* * * * * * * * ** **
49395260 CAGCTTCAATCTGA-TCCACTGTAACCTCAGGGAGATAAGAT-CTGAATTTCTTTGGTCTACTCC
192 --GGTGCGATCT-ACTCTACTGTAACTTCAGAGAGATAAGATCCT-TA-GT-TTTAATCCGCTCC
* * * *
49395323 ACTGTAACCTCAGGGAAATAAGATCT-CTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATA
251 ACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATA
*
49395387 AGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
315 AGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* *
49395422 TCAGGGAAATAAGACATGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
1 TCAGGGAGATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTA-TTT
* * *
49395487 TAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCT
65 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
49395552 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGT
130 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGT
*
49395617 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATA
195 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATC
49395682 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA
260 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAA
49395747 TTCTTCGGTCTGCTCCACTGTAATC
325 TTCTTCGGTCTGCTCCACTGTAATC
49395772 TCAGGGAGATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
1 TCAGGGAGATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
* * *
49395837 AATCCACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTC
66 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
49395902 AGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
131 AGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
* *
49395967 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATCT
196 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATCT
* ** ** * * *
49396032 CAGGGAGATAGGATTACCATATTTGATCTGCTCCGCTGTAATCTCAGGGAGATAGGATTTGCAAT
261 CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
*
49396097 TCTTCAGTCTGCTCCACTGTAATC
326 TCTTCGGTCTGCTCCACTGTAATC
49396121 TCAGGGAGATAAGAC
1 TCAGGGAGATAAGAC
49396136 CTGTATAATG
Statistics
Matches: 650, Mismatches: 57, Indels: 19
0.90 0.08 0.03
Matches are distributed among these distances:
349 286 0.44
350 159 0.24
351 2 0.00
352 32 0.05
353 33 0.05
354 56 0.09
355 82 0.13
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (349 bp):
TCAGGGAGATAAGACTTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATCT
CAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
TCTTCGGTCTGCTCCACTGTAATC
Found at i:49397348 original size:13 final size:14
Alignment explanation
Indices: 49397330--49397381 Score: 81
Period size: 13 Copynumber: 3.9 Consensus size: 14
49397320 TTAGCCTCTC
*
49397330 CATTTTTCA-CTTT
1 CATTTTTCATTTTT
49397343 CATTTTTCATTTTT
1 CATTTTTCATTTTT
49397357 CA-TTTTCATTTTT
1 CATTTTTCATTTTT
49397370 CATTTTTCATTT
1 CATTTTTCATTT
49397382 ATTTAATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
13 22 0.61
14 14 0.39
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:49397352 original size:7 final size:7
Alignment explanation
Indices: 49397330--49397381 Score: 81
Period size: 7 Copynumber: 7.7 Consensus size: 7
49397320 TTAGCCTCTC
49397330 CATTTTT
1 CATTTTT
*
49397337 CA-CTTT
1 CATTTTT
49397343 CATTTTT
1 CATTTTT
49397350 CATTTTT
1 CATTTTT
49397357 CA-TTTT
1 CATTTTT
49397363 CATTTTT
1 CATTTTT
49397370 CATTTTT
1 CATTTTT
49397377 CATTT
1 CATTT
49397382 ATTTAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 11 0.27
7 30 0.73
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:49397379 original size:20 final size:20
Alignment explanation
Indices: 49397330--49397381 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
49397320 TTAGCCTCTC
*
49397330 CATTTTTCACTTTCATTTTT
1 CATTTTTCATTTTCATTTTT
49397350 CATTTTTCATTTTCATTTTT
1 CATTTTTCATTTTCATTTTT
49397370 CATTTTTCATTT
1 CATTTTTCATTT
49397382 ATTTAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (20 bp):
CATTTTTCATTTTCATTTTT
Found at i:49398383 original size:6 final size:6
Alignment explanation
Indices: 49398369--49398430 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
49398359 TTTTGTTTTT
* * * *
49398369 TTTTTA TTTTGA TTTTTGA -TTT-- TTTTCA TTTTCA TTTTGA CTTTGA
1 TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
49398415 TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
49398431 TCTTTTTCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 3 0.06
5 3 0.06
6 36 0.75
7 6 0.12
ACGTcount: A:0.15, C:0.05, G:0.10, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:49398392 original size:46 final size:46
Alignment explanation
Indices: 49398322--49398441 Score: 113
Period size: 46 Copynumber: 2.6 Consensus size: 46
49398312 TCTTTTTCTC
* * * *
49398322 ATTTTCATTTTGA-TCTTGATTTTTTCTTCTTTCTTCTTTTTG-TTTT
1 ATTTTCATTTTGATTTTTGA-TTTTTCTTCATT-TTCATTTTGATTTG
* *
49398368 TTTTTTATTTTGATTTTTGATTTTT-TTCATTTTCATTTTGACTTTG
1 ATTTTCATTTTGATTTTTGATTTTTCTTCATTTTCATTTTGA-TTTG
* *
49398414 ATTTTGATTTTGATTTTT-CTTTTTCTTC
1 ATTTTCATTTTGATTTTTGATTTTTCTTC
49398442 CCTTTTTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
44 8 0.13
45 10 0.16
46 38 0.62
47 5 0.08
ACGTcount: A:0.11, C:0.10, G:0.07, T:0.72
Consensus pattern (46 bp):
ATTTTCATTTTGATTTTTGATTTTTCTTCATTTTCATTTTGATTTG
Found at i:49405137 original size:136 final size:136
Alignment explanation
Indices: 49404974--49405245 Score: 535
Period size: 136 Copynumber: 2.0 Consensus size: 136
49404964 TTAACTTGGT
49404974 CTATACTTTCAAGAGATTGTATATATTGATGCTATTGCTAACTTGGTCCCTGTTAATTTGGAATC
1 CTATACTTTCAAGAGATTGTATATATTGATGCTATTGCTAACTTGGTCCCTGTTAATTTGGAATC
49405039 TTTAAAAACTTTGGGAGATGCTTACTCATTTGTCATTTATTGCAGTGTTTTTATAATTGGGTTTT
66 TTTAAAAACTTTGGGAGATGCTTACTCATTTGTCATTTATTGCAGTGTTTTTATAATTGGGTTTT
49405104 AACTGC
131 AACTGC
49405110 CTATACTTTCAAGAGATTGTATATATTGATGCTATTGCTAACTTGGTCCCTGTTAATTTGGAATC
1 CTATACTTTCAAGAGATTGTATATATTGATGCTATTGCTAACTTGGTCCCTGTTAATTTGGAATC
*
49405175 TTTAAAAACTTTGGGAGATGCTTACTCATTTTTCATTTATTGCAGTGTTTTTATAATTGGGTTTT
66 TTTAAAAACTTTGGGAGATGCTTACTCATTTGTCATTTATTGCAGTGTTTTTATAATTGGGTTTT
49405240 AACTGC
131 AACTGC
49405246 ACAAAATCAC
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 135 1.00
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.44
Consensus pattern (136 bp):
CTATACTTTCAAGAGATTGTATATATTGATGCTATTGCTAACTTGGTCCCTGTTAATTTGGAATC
TTTAAAAACTTTGGGAGATGCTTACTCATTTGTCATTTATTGCAGTGTTTTTATAATTGGGTTTT
AACTGC
Found at i:49406169 original size:3 final size:3
Alignment explanation
Indices: 49406161--49406190 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
49406151 CTTCATTCTT
49406161 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49406191 GTTTAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:49411179 original size:19 final size:19
Alignment explanation
Indices: 49411138--49411177 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
49411128 AATACGCACG
*
49411138 TTTCATTTTGGTTCTTTAA
1 TTTCATTTTGATTCTTTAA
*
49411157 TTTCATTTT-ATTTTTTAA
1 TTTCATTTTGATTCTTTAA
49411175 TTT
1 TTT
49411178 TCCTTATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTCATTTTGATTCTTTAA
Found at i:49417236 original size:25 final size:25
Alignment explanation
Indices: 49417184--49417266 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 25
49417174 TAGCTGGAAA
* * * *
49417184 GAGCGTCCCGATATTAGCTC-TCAT
1 GAGCATCCCGTTAATAGCTCTTCGT
*
49417208 GAGCATCCCGTTATATAGTTCTT-GT
1 GAGCATCCCGTTA-ATAGCTCTTCGT
*
49417233 GAGCTTCCCGTTAATAGCTCTTCG-
1 GAGCATCCCGTTAATAGCTCTTCGT
49417257 GAGCATCCCG
1 GAGCATCCCG
49417267 ATCGGTTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
24 28 0.58
25 19 0.40
26 1 0.02
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (25 bp):
GAGCATCCCGTTAATAGCTCTTCGT
Found at i:49417378 original size:26 final size:25
Alignment explanation
Indices: 49417313--49417383 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 25
49417303 CAACTCTTAT
* *
49417313 GAGCGTCCCGATATATA-GCTCTTCG
1 GAGCTTCCCGAT-TAAAGGCTCTTCG
* *
49417338 GAGCTTCCCGTTTAAAGGCTCTTCAT
1 GAGCTTCCCGATTAAAGGCTCTTC-G
* *
49417364 GAGCTTCTCGATTAATGGCT
1 GAGCTTCCCGATTAAAGGCT
49417384 ATCCAGCGTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 3 0.08
25 17 0.46
26 17 0.46
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGATTAAAGGCTCTTCG
Found at i:49417794 original size:23 final size:23
Alignment explanation
Indices: 49417764--49417810 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
49417754 GAATGGTAAG
49417764 TTAAATTCCACATTATACAAACT
1 TTAAATTCCACATTATACAAACT
** *
49417787 TTAAATTCCATGTTATACGAACT
1 TTAAATTCCACATTATACAAACT
49417810 T
1 T
49417811 ACTAACCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.38
Consensus pattern (23 bp):
TTAAATTCCACATTATACAAACT
Found at i:49421433 original size:129 final size:129
Alignment explanation
Indices: 49421053--49421916 Score: 1322
Period size: 129 Copynumber: 6.7 Consensus size: 129
49421043 AGGTAAAATC
* * * * * **
49421053 CGCCATCTTTGATCTGCTCCACTATTACGTAGGGAGATGAGATCTG-ATATTT-CCAACCTATTC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTA-ATTTCCCAACCTATTC
* * * * *
49421116 TACTGCTGACCAAGGAGATAGGACTTGTGGCTTAATTCTGCTTCCTTACTCTTGAAGATAAGATT
65 CACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * * * *
49421181 CGTCGTCTTCGATCTGCTCTGATACTGCTTAGGGAGACAAGATCTGTAATTT-TCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
* ** *
49421245 ACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTTTTTACTCTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
49421309 CGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGTTA-ACAAGATCTGTAATTTCCCAACCTATTC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGG-GAGACAAGATCTGTAATTTCCCAACCTATTC
* **
49421373 CACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGTTTCCTTACTTTTGAAGATAAGATT
65 CACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* *
49421438 CGTCATCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
*
49421503 ACTGTTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
49421567 TGTCGTCTTCGATCTACTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
* * *
49421632 ACTACTAACCAGGGATATAGGACTTGTCGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
49421696 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
*
49421761 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
49421825 CGCCGTATTCGATCTGCTCCGCTATTGCTTAGGGAGATAAGATCTGTAATTTCCCAACCTATTCT
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
49421890 ACTGCTGACCAGGGATATAGGACTTGT
66 ACTGCTGACCAGGGATATAGGACTTGT
49421917 AATCTTCAAC
Statistics
Matches: 678, Mismatches: 54, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
128 155 0.23
129 523 0.77
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (129 bp):
CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
Found at i:49421938 original size:44 final size:44
Alignment explanation
Indices: 49421879--49422174 Score: 414
Period size: 44 Copynumber: 6.7 Consensus size: 44
49421869 TGTAATTTCC
* ** *
49421879 CAACCTATTCTACTGCTGACCAGGGA-TATAGGACTTGTAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTT
49421923 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* *
49421967 CTACCTATTCCACTGCTGGTCAAGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
*
49422011 CAGCCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* * * * * *
49422055 CTACCTATTCCTCTGCTAGTCAGGGAGATAGGACTTACAGTCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* * *
49422099 CAACCTATTCCACTGCTGGTCAGAGAGCTAGGACTTACAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* *
49422143 AAACCTATTCCACTGCTGGTCAGGGAGCTAGG
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGG
49422175 TTTTGTGATT
Statistics
Matches: 227, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 226 1.00
45 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (44 bp):
CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
Found at i:49423457 original size:21 final size:22
Alignment explanation
Indices: 49423433--49423474 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
49423423 TAGCCTGTCC
*
49423433 ATTTTTACTTTT-CATTTTTTT
1 ATTTTCACTTTTCCATTTTTTT
*
49423454 ATTTTCATTTTTCCATTTTTT
1 ATTTTCACTTTTCCATTTTTT
49423475 GACTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTTCACTTTTCCATTTTTTT
Found at i:49423458 original size:14 final size:15
Alignment explanation
Indices: 49423434--49423465 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
49423424 AGCCTGTCCA
49423434 TTTTTACTTTTCATT
1 TTTTTACTTTTCATT
49423449 TTTTTA-TTTTCATT
1 TTTTTACTTTTCATT
49423463 TTT
1 TTT
49423466 CCATTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTACTTTTCATT
Found at i:49424356 original size:6 final size:6
Alignment explanation
Indices: 49424347--49424415 Score: 70
Period size: 6 Copynumber: 11.7 Consensus size: 6
49424337 TCTTTCTCTT
* * * **
49424347 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTTTC TTCTT--
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TT-TTGA
49424394 TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTT
49424416 TTTTAGATTG
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 49 0.89
7 2 0.04
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:49424418 original size:23 final size:23
Alignment explanation
Indices: 49424345--49424424 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
49424335 TTTCTTTCTC
* *
49424345 TTTTTTCATTTTCATTTTGACTTT
1 TTTTTTGATTTTGATTTTGA-TTT
** ** *
49424369 GATTTTGATTTTGATTTTTCTTC
1 TTTTTTGATTTTGATTTTGATTT
49424392 TTTTTTGATTTTGATTTTGATTT
1 TTTTTTGATTTTGATTTTGATTT
*
49424415 TTTTTAGATT
1 TTTTTTGATT
49424425 GGATCTAAAC
Statistics
Matches: 43, Mismatches: 13, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
23 29 0.67
24 14 0.33
ACGTcount: A:0.14, C:0.06, G:0.10, T:0.70
Consensus pattern (23 bp):
TTTTTTGATTTTGATTTTGATTT
Found at i:49436188 original size:19 final size:19
Alignment explanation
Indices: 49436147--49436186 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
49436137 AATACGCACG
*
49436147 TTTCATTTTGGTTCTTTAA
1 TTTCATTTTGATTCTTTAA
*
49436166 TTTCATTTT-ATTTTTTAA
1 TTTCATTTTGATTCTTTAA
49436184 TTT
1 TTT
49436187 TCCTTATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTCATTTTGATTCTTTAA
Done.