Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 174 of 199
Found at i:50874767 original size:11 final size:11
Alignment explanation
Indices: 50874753--50874786 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50874743 TTTAAATAGG
50874753 AATTTGAGAGA
1 AATTTGAGAGA
*
50874764 AATTTGAGAGG
1 AATTTGAGAGA
*
50874775 AATTTGATAGA
1 AATTTGAGAGA
50874786 A
1 A
50874787 TATTAGAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.29
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:50874775 original size:22 final size:23
Alignment explanation
Indices: 50874750--50874795 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
50874740 TCTTTTAAAT
*
50874750 AGGAATTTGAGAGAA-ATTTGAG
1 AGGAATTTGAGAGAATATTAGAG
*
50874772 AGGAATTTGATAGAATATTAGAG
1 AGGAATTTGAGAGAATATTAGAG
50874795 A
1 A
50874796 TAATATTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.43, C:0.00, G:0.28, T:0.28
Consensus pattern (23 bp):
AGGAATTTGAGAGAATATTAGAG
Found at i:50875373 original size:17 final size:16
Alignment explanation
Indices: 50875340--50875374 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
50875330 ATATATGTTT
50875340 ATATTAAATCATATTA
1 ATATTAAATCATATTA
*
50875356 ATATTAATATCATTTTA
1 ATATTAA-ATCATATTA
50875373 AT
1 AT
50875375 TACTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAAATCATATTA
Found at i:50875781 original size:20 final size:20
Alignment explanation
Indices: 50875756--50875795 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
50875746 CCCAAATAAG
50875756 TATATTTCAAATGGGCTGGA
1 TATATTTCAAATGGGCTGGA
*
50875776 TATATTTCAAATGGGTTGGA
1 TATATTTCAAATGGGCTGGA
50875796 AGTACATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (20 bp):
TATATTTCAAATGGGCTGGA
Found at i:50878283 original size:17 final size:18
Alignment explanation
Indices: 50878261--50878295 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50878251 AGTTCTAATG
*
50878261 TGTGATGA-ATTGTGATA
1 TGTGATGATATTATGATA
50878278 TGTGATGATATTATGATA
1 TGTGATGATATTATGATA
50878296 GGTAATATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
TGTGATGATATTATGATA
Found at i:50879209 original size:12 final size:12
Alignment explanation
Indices: 50879194--50879219 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50879184 TAGTTTATAG
50879194 TTATCATTATTA
1 TTATCATTATTA
50879206 TTATCATTATTA
1 TTATCATTATTA
50879218 TT
1 TT
50879220 TTGGGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:50883011 original size:26 final size:27
Alignment explanation
Indices: 50882963--50883017 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
50882953 AAAATTATAA
50882963 AAAATTTTAAAAAATAATAAAA-TTCT
1 AAAATTTTAAAAAATAATAAAATTTCT
* * *
50882989 AAAATTTTAAAAAGTATTTAAATTTCT
1 AAAATTTTAAAAAATAATAAAATTTCT
50883016 AA
1 AA
50883018 GTTTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (27 bp):
AAAATTTTAAAAAATAATAAAATTTCT
Found at i:50883131 original size:31 final size:33
Alignment explanation
Indices: 50883085--50883145 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
50883075 TCAATTTTTA
50883085 TATATTATTTTGAA-TTT-TAAAAAATTATAAT
1 TATATTATTTTGAATTTTATAAAAAATTATAAT
50883116 TATA-TATTTTAGAATTTTATAAAAAATTAT
1 TATATTATTTT-GAATTTTATAAAAAATTAT
50883146 TTTTAAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 6 0.22
31 7 0.26
32 3 0.11
33 11 0.41
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (33 bp):
TATATTATTTTGAATTTTATAAAAAATTATAAT
Found at i:50883157 original size:24 final size:25
Alignment explanation
Indices: 50883122--50883170 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
50883112 TAATTATATA
50883122 TTTTAGAA-TTTTATAAAAAATTAT
1 TTTTAGAATTTTTATAAAAAATTAT
*
50883146 TTTTA-AACTTTTTTTAAAAAATTAT
1 TTTTAGAA-TTTTTATAAAAAATTAT
50883171 ATATCTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 2 0.09
24 5 0.23
25 15 0.68
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTTAGAATTTTTATAAAAAATTAT
Found at i:50886946 original size:153 final size:153
Alignment explanation
Indices: 50886668--50886976 Score: 618
Period size: 153 Copynumber: 2.0 Consensus size: 153
50886658 AAACAAAAAA
50886668 TTAAGTAATATTTGTATAATTAAAATTAATATGATAATATGAATTTCTTTTATAATGTGGGATAT
1 TTAAGTAATATTTGTATAATTAAAATTAATATGATAATATGAATTTCTTTTATAATGTGGGATAT
50886733 ATTTATATTTAATACATATTATATTACAAAAAATAGTATCATACACATTTAACTGCATGTAATAT
66 ATTTATATTTAATACATATTATATTACAAAAAATAGTATCATACACATTTAACTGCATGTAATAT
50886798 TTTTTTTTGGTGAAAAAAGAAAC
131 TTTTTTTTGGTGAAAAAAGAAAC
50886821 TTAAGTAATATTTGTATAATTAAAATTAATATGATAATATGAATTTCTTTTATAATGTGGGATAT
1 TTAAGTAATATTTGTATAATTAAAATTAATATGATAATATGAATTTCTTTTATAATGTGGGATAT
50886886 ATTTATATTTAATACATATTATATTACAAAAAATAGTATCATACACATTTAACTGCATGTAATAT
66 ATTTATATTTAATACATATTATATTACAAAAAATAGTATCATACACATTTAACTGCATGTAATAT
50886951 TTTTTTTTGGTGAAAAAAGAAAC
131 TTTTTTTTGGTGAAAAAAGAAAC
50886974 TTA
1 TTA
50886977 CAAAACTAAG
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 156 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.43
Consensus pattern (153 bp):
TTAAGTAATATTTGTATAATTAAAATTAATATGATAATATGAATTTCTTTTATAATGTGGGATAT
ATTTATATTTAATACATATTATATTACAAAAAATAGTATCATACACATTTAACTGCATGTAATAT
TTTTTTTTGGTGAAAAAAGAAAC
Found at i:50892386 original size:27 final size:27
Alignment explanation
Indices: 50892347--50892418 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
50892337 ATATATTATT
50892347 ATAAAA-AATTAAATATATATAAATAC
1 ATAAAATAATTAAATATATATAAATAC
* * * **
50892373 ATAAAATAACTAAAAATTTATAAATTT
1 ATAAAATAATTAAATATATATAAATAC
*
50892400 ATAAAATATTTAAATATAT
1 ATAAAATAATTAAATATAT
50892419 GAAATCACTA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (27 bp):
ATAAAATAATTAAATATATATAAATAC
Found at i:50895907 original size:9 final size:9
Alignment explanation
Indices: 50895882--50895939 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
50895872 AATATTTATG
*
50895882 TATGTAAAT
1 TATGTAAGT
50895891 TATGTAAGT
1 TATGTAAGT
50895900 TATGTAAGTT
1 TATGTAAG-T
*
50895910 ACTATGTAGGT
1 --TATGTAAGT
**
50895921 TATGTTCGT
1 TATGTAAGT
50895930 TATGTAAGT
1 TATGTAAGT
50895939 T
1 T
50895940 GTGATATGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
9 31 0.77
10 1 0.03
11 1 0.03
12 7 0.17
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (9 bp):
TATGTAAGT
Found at i:50896057 original size:9 final size:9
Alignment explanation
Indices: 50896043--50896079 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
50896033 AATAAGTATA
*
50896043 ATGTAAGCT
1 ATGTAAGTT
50896052 ATGTAAGTT
1 ATGTAAGTT
50896061 ATGTAAGTT
1 ATGTAAGTT
50896070 ATGTAAGTT
1 ATGTAAGTT
50896079 A
1 A
50896080 AGATATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:50896125 original size:39 final size:40
Alignment explanation
Indices: 50896071--50896146 Score: 127
Period size: 39 Copynumber: 1.9 Consensus size: 40
50896061 ATGTAAGTTA
* *
50896071 TGTAAGTTAAGATATAATATATATCCCTGTAAGTTATAAG
1 TGTAAGTTAAGATATAATATACATCCCGGTAAGTTATAAG
50896111 TGTAA-TTAAGATATAATATACATCCCGGTAAGTTAT
1 TGTAAGTTAAGATATAATATACATCCCGGTAAGTTAT
50896147 GTATTATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 29 0.85
40 5 0.15
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.37
Consensus pattern (40 bp):
TGTAAGTTAAGATATAATATACATCCCGGTAAGTTATAAG
Found at i:50896158 original size:9 final size:9
Alignment explanation
Indices: 50896144--50896194 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
50896134 CCCGGTAAGT
50896144 TATGTATTA
1 TATGTATTA
50896153 TATGTATTA
1 TATGTATTA
*
50896162 TATGTAAGT-
1 TATGT-ATTA
*
50896171 TATGTAGGT-
1 TATGTA-TTA
50896180 TATGTATTA
1 TATGTATTA
50896189 TATGTA
1 TATGTA
50896195 GGTTATGTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
8 2 0.05
9 33 0.89
10 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (9 bp):
TATGTATTA
Found at i:50896167 original size:18 final size:18
Alignment explanation
Indices: 50896142--50896203 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
50896132 ATCCCGGTAA
50896142 GTTATGTATTATATGTA-
1 GTTATGTATTATATGTAG
* *
50896159 TTATATGTAAGT-TATGTAG
1 GT-TATGT-ATTATATGTAG
50896178 GTTATGTATTATATGTAG
1 GTTATGTATTATATGTAG
50896196 GTTATGTA
1 GTTATGTA
50896204 GGTTATTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
17 3 0.08
18 31 0.84
19 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (18 bp):
GTTATGTATTATATGTAG
Found at i:50896168 original size:27 final size:27
Alignment explanation
Indices: 50896138--50896209 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
50896128 ATACATCCCG
*
50896138 GTAAGTTATGTA-TTATATGTATTATAT
1 GTAAGTTATGTAGGT-TATGTATTATAT
50896165 GTAAGTTATGTAGGTTATGTATTATAT
1 GTAAGTTATGTAGGTTATGTATTATAT
*
50896192 GTAGGTTATGTAGGTTAT
1 GTAAGTTATGTAGGTTAT
50896210 TATATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (27 bp):
GTAAGTTATGTAGGTTATGTATTATAT
Found at i:50896201 original size:9 final size:9
Alignment explanation
Indices: 50896162--50896209 Score: 62
Period size: 9 Copynumber: 5.3 Consensus size: 9
50896152 ATATGTATTA
*
50896162 TATGTAAGT
1 TATGTAGGT
50896171 TATGTAGGT
1 TATGTAGGT
*
50896180 TATGTA-TT
1 TATGTAGGT
50896188 ATATGTAGGT
1 -TATGTAGGT
50896198 TATGTAGGT
1 TATGTAGGT
50896207 TAT
1 TAT
50896210 TATATTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.94
10 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (9 bp):
TATGTAGGT
Found at i:50897010 original size:18 final size:18
Alignment explanation
Indices: 50896967--50897001 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50896957 CAATCAACTT
50896967 AATA-TAAATTAAATCAA
1 AATATTAAATTAAATCAA
50896984 AATATTAAATTAAA-CAA
1 AATATTAAATTAAATCAA
50897001 A
1 A
50897002 TATGGTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
AATATTAAATTAAATCAA
Found at i:50898848 original size:27 final size:29
Alignment explanation
Indices: 50898789--50898849 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 29
50898779 CGATATCTTA
50898789 AAAATTTAAATAATTCTATTATTAGAAAATTT
1 AAAATTTAAATAATTC--TTATTA-AAAATTT
50898821 AAAATTTAAATAATTC-TATT-AAAATTT
1 AAAATTTAAATAATTCTTATTAAAAATTT
50898848 AA
1 AA
50898850 TACTTAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 9 0.31
29 4 0.14
32 16 0.55
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (29 bp):
AAAATTTAAATAATTCTTATTAAAAATTT
Found at i:50899254 original size:14 final size:14
Alignment explanation
Indices: 50899212--50899320 Score: 71
Period size: 14 Copynumber: 7.8 Consensus size: 14
50899202 ACATTAACTA
*
50899212 TTAACCCCTAAACCC
1 TTAA-CCCTTAACCC
*
50899227 TTAACCC-CAACCC
1 TTAACCCTTAACCC
50899240 TTAACCCTTAACCC
1 TTAACCCTTAACCC
*
50899254 TTAACCCTAAACACC
1 TTAACCCTTAAC-CC
*
50899269 --AACCCTTAAACC
1 TTAACCCTTAACCC
* * *
50899281 ATAATCCATAAACCC
1 TTAA-CCCTTAACCC
* * *
50899296 CTAACCCATATCCC
1 TTAACCCTTAACCC
*
50899310 TTAAACCTTAA
1 TTAACCCTTAA
50899321 ATCATAGAAC
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
12 2 0.03
13 20 0.28
14 34 0.47
15 16 0.22
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (14 bp):
TTAACCCTTAACCC
Found at i:50899259 original size:21 final size:21
Alignment explanation
Indices: 50899212--50899320 Score: 71
Period size: 20 Copynumber: 5.2 Consensus size: 21
50899202 ACATTAACTA
*
50899212 TTAACCCCTAAACCCTTAACCC
1 TTAA-CCCTTAACCCTTAACCC
*
50899234 -CAACCCTTAACCCTTAACCC
1 TTAACCCTTAACCCTTAACCC
*
50899254 TTAACCCTAAACACC--AACCC
1 TTAACCCTTAAC-CCTTAACCC
* * * *
50899274 TTAAACCATAATCCATAAACCC
1 TTAACCCTTAA-CCCTTAACCC
* * * *
50899296 CTAACCCATATCCCTTAAACC
1 TTAACCCTTAACCCTTAACCC
50899317 TTAA
1 TTAA
50899321 ATCATAGAAC
Statistics
Matches: 67, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
20 30 0.45
21 22 0.33
22 15 0.22
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (21 bp):
TTAACCCTTAACCCTTAACCC
Found at i:50899482 original size:13 final size:13
Alignment explanation
Indices: 50899460--50899494 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
50899450 TAAACCCCTA
* *
50899460 AACCCCTAACCTC
1 AACCCTTAACCCC
50899473 AACCCTTAACCCC
1 AACCCTTAACCCC
50899486 AACCCTTAA
1 AACCCTTAA
50899495 ACCATAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.49, G:0.00, T:0.17
Consensus pattern (13 bp):
AACCCTTAACCCC
Found at i:50899511 original size:22 final size:22
Alignment explanation
Indices: 50899486--50899535 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
50899476 CCTTAACCCC
50899486 AACCCTTAAACCATAAT-CCATA
1 AACCCTTAAACCAT-ATCCCATA
* *
50899508 AACCCTTAACCCATATCCCTTA
1 AACCCTTAAACCATATCCCATA
50899530 AACCCT
1 AACCCT
50899536 AAATTATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (22 bp):
AACCCTTAAACCATATCCCATA
Found at i:50900009 original size:74 final size:75
Alignment explanation
Indices: 50899883--50900035 Score: 186
Period size: 74 Copynumber: 2.1 Consensus size: 75
50899873 GGTTTCTAAT
* * * *
50899883 AAGCGCCACTAACGTCTCTAAAAGCTATATAAAAAAAGACATCATTCTCTTAACAG-TTTGTGGC
1 AAGCGCCACTAAAGTCCCTAAAAGCTAAATAAAAAAAGACATCATTCTCTTAACAGTTTTGCGGC
*
50899947 GTTTTTAGAC
66 GCTTTTAGAC
* * *
50899957 AAGCGCCACTAAAAG-CCCTAAATGCTAAATAAAAAACGACATC-TTTTGCTTAACAGTTTTGCG
1 AAGCGCCACT-AAAGTCCCTAAAAGCTAAATAAAAAAAGACATCATTCT-CTTAACAGTTTTGCG
*
50900020 GCGCTTTTAGAT
64 GCGCTTTTAGAC
50900032 AAGC
1 AAGC
50900036 ACCGCTAACT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
73 3 0.04
74 42 0.63
75 22 0.33
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (75 bp):
AAGCGCCACTAAAGTCCCTAAAAGCTAAATAAAAAAAGACATCATTCTCTTAACAGTTTTGCGGC
GCTTTTAGAC
Found at i:50901704 original size:24 final size:24
Alignment explanation
Indices: 50901659--50901705 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
50901649 TTATAATATA
* * *
50901659 AAATATATATGATTATAAAAAATT
1 AAATATATATAAATACAAAAAATT
*
50901683 AAATATATATAAATACATAAAAT
1 AAATATATATAAATACAAAAAAT
50901706 AACTAACAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATATATATAAATACAAAAAATT
Found at i:50902399 original size:22 final size:21
Alignment explanation
Indices: 50902356--50902399 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
50902346 TTTTTGCATC
* *
50902356 TCACAAATAAAGAAAAAAATT
1 TCACAAAGAAAAAAAAAAATT
50902377 TCACAAAGAAAAAAAAAACATT
1 TCACAAAGAAAAAAAAAA-ATT
50902399 T
1 T
50902400 TATTGAACGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (21 bp):
TCACAAAGAAAAAAAAAAATT
Found at i:50902913 original size:9 final size:9
Alignment explanation
Indices: 50902877--50902915 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
50902867 TAAATTTCAC
50902877 AATTCAAAT
1 AATTCAAAT
*
50902886 AACTCAAAT
1 AATTCAAAT
**
50902895 AATTTGAAT
1 AATTCAAAT
50902904 AATTCAAAT
1 AATTCAAAT
50902913 AAT
1 AAT
50902916 GATTGATATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (9 bp):
AATTCAAAT
Found at i:50903023 original size:20 final size:19
Alignment explanation
Indices: 50903000--50903066 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 19
50902990 TACAAAATAA
50903000 TTCAAAATAATTTTCAAAAT
1 TTCAAAATAATTTT-AAAAT
50903020 TTCAAAATAAATTTT-AAAT
1 TTCAAAAT-AATTTTAAAAT
*
50903039 TTTAAAAT-ATTTATAAAAAT
1 TTCAAAATAATTT-T-AAAAT
50903059 TTCAAAAT
1 TTCAAAAT
50903067 TTATATTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
19 11 0.27
20 19 0.46
21 6 0.15
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (19 bp):
TTCAAAATAATTTTAAAAT
Found at i:50903095 original size:13 final size:13
Alignment explanation
Indices: 50903077--50903106 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
50903067 TTATATTTTT
50903077 AAAAAAAT-TATA
1 AAAAAAATATATA
50903089 AAAAAAATATATA
1 AAAAAAATATATA
50903102 AAAAA
1 AAAAA
50903107 GTGAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAAAATATATA
Found at i:50906590 original size:18 final size:19
Alignment explanation
Indices: 50906553--50906599 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
50906543 AATAATTATA
50906553 AAAATATTATTTATTTTTT
1 AAAATATTATTTATTTTTT
*
50906572 AGAATATTATTTA-TTTTT
1 AAAATATTATTTATTTTTT
50906590 AAAATATTAT
1 AAAATATTAT
50906600 CATATTAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
AAAATATTATTTATTTTTT
Found at i:50914784 original size:20 final size:21
Alignment explanation
Indices: 50914747--50914795 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
50914737 TTAAATACAC
*
50914747 TTATAAAAACTATTATAA-TA
1 TTATAAAAACTATAATAACTA
* * *
50914767 TTATAAAAATTCTAATAACTT
1 TTATAAAAACTATAATAACTA
50914788 TTATAAAA
1 TTATAAAA
50914796 TTAATAAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (21 bp):
TTATAAAAACTATAATAACTA
Found at i:50914849 original size:21 final size:22
Alignment explanation
Indices: 50914786--50914849 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 22
50914776 TTCTAATAAC
*
50914786 TTTTATAAAATTAATAAAACATA
1 TTTTATAAAATTAATATAA-ATA
50914809 TTTTATAAAA--ACATATTAAA-A
1 TTTTATAAAATTA-ATA-TAAATA
*
50914830 TTTTATAAAATTGATATAAA
1 TTTTATAAAATTAATATAAA
50914850 CTTATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
21 16 0.46
22 7 0.20
23 12 0.34
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTTATAAAATTAATATAAATA
Found at i:50914868 original size:65 final size:64
Alignment explanation
Indices: 50914747--50914869 Score: 142
Period size: 65 Copynumber: 1.9 Consensus size: 64
50914737 TTAAATACAC
* * * * *
50914747 TTATAAAAACTATTATAATATTATAAAAATTCTAATAACTTTTATAAAATTAATAAAACATATT
1 TTATAAAAACTATTAAAATATTATAAAAATTATAATAACTTATAAAAAAATAATAAAACATATT
* *
50914811 TTATAAAAACATATTAAAATTTTAT-AAAATTGAT-ATAAACTTATAAAAAAATCATAAAA
1 TTATAAAAAC-TATTAAAATATTATAAAAATT-ATAAT-AACTTATAAAAAAATAATAAAA
50914870 ACTTGAATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
64 18 0.37
65 31 0.63
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (64 bp):
TTATAAAAACTATTAAAATATTATAAAAATTATAATAACTTATAAAAAAATAATAAAACATATT
Found at i:50915431 original size:10 final size:9
Alignment explanation
Indices: 50915418--50915559 Score: 64
Period size: 10 Copynumber: 15.6 Consensus size: 9
50915408 TTTATCAGAA
50915418 TTTATTAATT
1 TTTA-TAATT
*
50915428 TTTAT-AGT
1 TTTATAATT
50915436 TTTATAATGT
1 TTTATAAT-T
50915446 TTT-TAAGTT
1 TTTATAA-TT
50915455 TTTATAATT
1 TTTATAATT
*
50915464 TTAATAAGTT
1 TTTATAA-TT
* *
50915474 TATATCAAAT
1 TTTAT-AATT
*
50915484 TTAATATATT
1 TTTATA-ATT
50915494 TTTAT-ATT
1 TTTATAATT
*
50915502 TTT-TAATA
1 TTTATAATT
50915510 TTTA-ATATT
1 TTTATA-ATT
50915519 TTTAT--TT
1 TTTATAATT
*
50915526 TATTATAACT
1 T-TTATAATT
* *
50915536 TTTCTTATT
1 TTTATAATT
*
50915545 TTTAATATTT
1 TTT-ATAATT
50915555 TTTAT
1 TTTAT
50915560 GAGAAAAATA
Statistics
Matches: 98, Mismatches: 19, Indels: 31
0.66 0.13 0.21
Matches are distributed among these distances:
7 4 0.04
8 23 0.23
9 34 0.35
10 35 0.36
11 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTATAATT
Found at i:50915450 original size:19 final size:19
Alignment explanation
Indices: 50915426--50915462 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50915416 AATTTATTAA
50915426 TTTTTATAG-TTTTATAATG
1 TTTTTA-AGTTTTTATAATG
50915445 TTTTTAAGTTTTTATAAT
1 TTTTTAAGTTTTTATAAT
50915463 TTTAATAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (19 bp):
TTTTTAAGTTTTTATAATG
Found at i:50915474 original size:27 final size:26
Alignment explanation
Indices: 50915399--50915476 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
50915389 TTTTATAATT
*
50915399 TTTTTATAA-TTTATCAGAATTTATTAA
1 TTTTTATAATTTTAT-A-AGTTTATTAA
*
50915426 TTTTTATAGTTTTATAATGTTT-TTAA
1 TTTTTATAATTTTATAA-GTTTATTAA
50915452 GTTTTTATAATTTTAATAAGTTTAT
1 -TTTTTATAATTTT-ATAAGTTTAT
50915477 ATCAAATTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
26 5 0.12
27 28 0.65
28 10 0.23
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTTTATAATTTTATAAGTTTATTAA
Found at i:50915488 original size:20 final size:19
Alignment explanation
Indices: 50915449--50915489 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50915439 ATAATGTTTT
* *
50915449 TAAGTTTTTATAATTTTAA
1 TAAGTTTATATAAATTTAA
50915468 TAAGTTTATATCAAATTTAA
1 TAAGTTTATAT-AAATTTAA
50915488 TA
1 TA
50915490 TATTTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAGTTTATATAAATTTAA
Found at i:50924072 original size:21 final size:19
Alignment explanation
Indices: 50924027--50924073 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
50924017 TTCTAGAAAG
50924027 TTTTTAATTTTTTTAACTT
1 TTTTTAATTTTTTTAACTT
*
50924046 TCTTTATATATTTTTTAGA-TT
1 TTTTTA-AT-TTTTTTA-ACTT
50924067 TTTTTAA
1 TTTTTAA
50924074 AAAAAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 5 0.22
20 3 0.13
21 14 0.61
22 1 0.04
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTAATTTTTTTAACTT
Found at i:50924127 original size:18 final size:18
Alignment explanation
Indices: 50924104--50924152 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
50924094 ATATAATATG
50924104 TTATTCGAATTATTAGAA
1 TTATTCGAATTATTAGAA
* *
50924122 TTATTC-AAGTTATTTGAG
1 TTATTCGAA-TTATTAGAA
*
50924140 TTATTTGAATTAT
1 TTATTCGAATTAT
50924153 AAAATTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.51
Consensus pattern (18 bp):
TTATTCGAATTATTAGAA
Found at i:50930083 original size:7 final size:7
Alignment explanation
Indices: 50930071--50930113 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
50930061 GCGGATTAAG
50930071 AATTCAA
1 AATTCAA
50930078 AATTCAA
1 AATTCAA
50930085 AATTCAA
1 AATTCAA
50930092 AATTCAA
1 AATTCAA
50930099 AATTCAA
1 AATTCAA
50930106 AATTCAA
1 AATTCAA
50930113 A
1 A
50930114 TTTGAAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (7 bp):
AATTCAA
Found at i:50930125 original size:7 final size:7
Alignment explanation
Indices: 50930115--50930158 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
50930105 AAATTCAAAT
50930115 TTGAAGA
1 TTGAAGA
50930122 TTGAAGA
1 TTGAAGA
*
50930129 TTGAAAA
1 TTGAAGA
*
50930136 TTGAAAA
1 TTGAAGA
**
50930143 TTGGGGA
1 TTGAAGA
50930150 TTGAAGA
1 TTGAAGA
50930157 TT
1 TT
50930159 TAGGAAGGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (7 bp):
TTGAAGA
Found at i:50935101 original size:10 final size:10
Alignment explanation
Indices: 50935086--50935110 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50935076 CAAATCTAAC
50935086 ATTATGTAAA
1 ATTATGTAAA
50935096 ATTATGTAAA
1 ATTATGTAAA
50935106 ATTAT
1 ATTAT
50935111 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:50935155 original size:55 final size:55
Alignment explanation
Indices: 50935094--50935274 Score: 344
Period size: 55 Copynumber: 3.3 Consensus size: 55
50935084 ACATTATGTA
50935094 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
* *
50935149 AAATTATGCAAAATTATTAAGTCCAAAAATTGTGTTAATGGCTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
50935204 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
50935259 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
50935275 GGTTAGGGTT
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 122 1.00
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:50935303 original size:29 final size:29
Alignment explanation
Indices: 50935269--50935517 Score: 357
Period size: 30 Copynumber: 8.6 Consensus size: 29
50935259 AAATTATGTA
50935269 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
50935298 AAATTAGGTTAGGG-CAGTGGGTTTTTAATT
1 AAATTAGGTTAGGGTTA--GGGTTTTTAATT
50935328 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
1 AAATTAGGTTAGGG-TTAGGGTTTTTAATT
*
50935358 AAATTAGGTTA-GGTTAGGATTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
50935386 AAATTAGGTTAGGG-CAGTAGGTTTTTAATT
1 AAATTAGGTTAGGGTTAG--GGTTTTTAATT
50935416 AAATTAGGTTAGGCAG-T-GGGTTTTTAATT
1 AAATTAGGTTAGG--GTTAGGGTTTTTAATT
*
50935445 AAATTAGGTTAGAGTTA-GGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
50935473 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
50935502 AAATTAGGTTAGGGTT
1 AAATTAGGTTAGGGTT
50935518 TTTAATTAAA
Statistics
Matches: 200, Mismatches: 8, Indels: 24
0.86 0.03 0.10
Matches are distributed among these distances:
27 1 0.00
28 56 0.28
29 68 0.34
30 72 0.36
31 1 0.00
32 2 0.01
ACGTcount: A:0.29, C:0.01, G:0.27, T:0.43
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:50935390 original size:88 final size:86
Alignment explanation
Indices: 50935269--50935518 Score: 387
Period size: 88 Copynumber: 2.9 Consensus size: 86
50935259 AAATTATGTA
50935269 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATTAAATTA
1 AAATTAGGTTA-GGTTA-GGTTTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATTAAATTA
50935334 GGTTAGGGTTTAGGGTTTTTAATT
64 GGTTAGGGTTT-GGGTTTTTAATT
*
50935358 AAATTAGGTTAGGTTAGGATTTTTAATTAAATTAGGTTAGGGCAGTAGGTTTTTAATTAAATTAG
1 AAATTAGGTTAGGTTAGG-TTTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATTAAATTAG
***
50935423 GTTAGGCAGTGGGTTTTTAATT
65 GTTAGGGTTTGGGTTTTTAATT
*
50935445 AAATTAGGTTAGAGTTAGGTTTTTAATTAAATTAGGTTAGGG--TTAGGGTTTTTAATTAAATTA
1 AAATTAGGTTAG-GTTAGGTTTTTAATTAAATTAGGTTAGGGCAGT-GGGTTTTTAATTAAATTA
50935508 GGTTAGGGTTT
64 GGTTAGGGTTT
50935519 TTAATTAAAT
Statistics
Matches: 149, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
85 1 0.01
86 25 0.17
87 49 0.33
88 63 0.42
89 11 0.07
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.44
Consensus pattern (86 bp):
AAATTAGGTTAGGTTAGGTTTTTAATTAAATTAGGTTAGGGCAGTGGGTTTTTAATTAAATTAGG
TTAGGGTTTGGGTTTTTAATT
Found at i:50935524 original size:18 final size:18
Alignment explanation
Indices: 50935487--50935539 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 18
50935477 TAGGTTAGGG
50935487 TTAGGGTTTTTAATTAAATTA
1 TTAGGGTTTTTAATT-AA--A
50935508 GGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTTTTAATTAAA
50935528 TTAGGGTTTTTA
1 TTAGGGTTTTTA
50935540 TTACATCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 12 0.40
20 1 0.03
22 2 0.07
23 15 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (18 bp):
TTAGGGTTTTTAATTAAA
Found at i:50935655 original size:71 final size:71
Alignment explanation
Indices: 50935538--50935722 Score: 307
Period size: 71 Copynumber: 2.6 Consensus size: 71
50935528 TTAGGGTTTT
*
50935538 TATTACATCAAATAGAACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAACTTT
1 TATTACATCAAATA-AACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTT
50935603 CTATGCC
65 CTATGCC
* * *
50935610 TATTATATCAAATAAACTTCTATTTTATTATTTCAAATAATATCAAAATAACTTGAAAAAATTTC
1 TATTACATCAAATAAACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTTC
*
50935675 TATGCG
66 TATGCC
*
50935681 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTATATCAAATAATA
50935723 AATTTAAATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 92 0.88
72 13 0.12
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTATATCAAATAATATCAAAATAACTCGAAAAAATTTC
TATGCC
Found at i:50936151 original size:18 final size:18
Alignment explanation
Indices: 50936124--50936158 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50936114 CGAAAAAGGA
* *
50936124 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
50936142 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
50936159 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:50936820 original size:7 final size:7
Alignment explanation
Indices: 50936810--50936834 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50936800 TTATATACAT
50936810 AATACTA
1 AATACTA
50936817 AATACTA
1 AATACTA
50936824 AATACTA
1 AATACTA
50936831 AATA
1 AATA
50936835 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:50937949 original size:30 final size:31
Alignment explanation
Indices: 50937915--50937978 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
50937905 GCCATTGATG
*
50937915 AAAATAT-AAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATATAAAATTATTTTAAA
50937945 AAAATATAAAAAAATATAAAATTATTTTAAA
1 AAAATATAAAAAAATATAAAATTATTTTAAA
50937976 AAA
1 AAA
50937979 TGAAATTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AAAATATAAAAAAATATAAAATTATTTTAAA
Found at i:50937954 original size:10 final size:10
Alignment explanation
Indices: 50937941--50937965 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50937931 AAAATTATTT
50937941 TAAAAAAATA
1 TAAAAAAATA
50937951 TAAAAAAATA
1 TAAAAAAATA
50937961 TAAAA
1 TAAAA
50937966 TTATTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:50938035 original size:29 final size:29
Alignment explanation
Indices: 50938003--50938091 Score: 75
Period size: 29 Copynumber: 3.3 Consensus size: 29
50937993 AATTGAAATT
50938003 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
50938032 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
50938054 AAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
50938083 AAATTTGGA
1 AAATATGGA
50938092 AAGAAATTGA
Statistics
Matches: 42, Mismatches: 11, Indels: 14
0.63 0.16 0.21
Matches are distributed among these distances:
22 9 0.21
23 4 0.10
24 4 0.10
27 5 0.12
28 4 0.10
29 16 0.38
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:50938036 original size:51 final size:51
Alignment explanation
Indices: 50937980--50938087 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 51
50937970 TTTAAAAAAT
*
50937980 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
*
50938031 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
50938082 GAAATT
1 GAAATT
50938088 TGGAAAGAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:50938680 original size:18 final size:17
Alignment explanation
Indices: 50938647--50938691 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
50938637 TTCTAATTTT
50938647 TTTAAAAATTATTAAAA
1 TTTAAAAATTATTAAAA
50938664 TTTAAATAATTGA-TAAAA
1 TTTAAA-AATT-ATTAAAA
*
50938682 TTCAAAAATT
1 TTTAAAAATT
50938692 TTATAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 10 0.40
18 14 0.56
19 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
TTTAAAAATTATTAAAA
Found at i:50938697 original size:18 final size:18
Alignment explanation
Indices: 50938650--50938699 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
50938640 TAATTTTTTT
* *
50938650 AAAAATTAT-TAAAATTT
1 AAAAATTTTATAAAATTC
*
50938667 AAATAA-TTGATAAAATTC
1 AAA-AATTTTATAAAATTC
50938685 AAAAATTTTATAAAA
1 AAAAATTTTATAAAA
50938700 ATAAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
AAAAATTTTATAAAATTC
Found at i:50942760 original size:5 final size:5
Alignment explanation
Indices: 50942750--50942774 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50942740 CATAAACAAG
50942750 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
50942775 TAACGAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:50946144 original size:14 final size:14
Alignment explanation
Indices: 50946125--50946151 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50946115 TGAGTTGACA
50946125 AAAAAAGAAAAAGG
1 AAAAAAGAAAAAGG
50946139 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
50946152 TGCAAACAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAGG
Found at i:50946964 original size:3 final size:3
Alignment explanation
Indices: 50946956--50946981 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50946946 AACCAAGTAT
50946956 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
50946982 TTTTATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:50949048 original size:24 final size:24
Alignment explanation
Indices: 50949024--50949070 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
50949014 AAACTACTTC
50949024 TAAAGAAAACTCAAGAGAGAATTCT
1 TAAAGAAAACTCAA-AGAGAATTCT
**
50949049 TGGAGAAAACTCAAAGAGAATT
1 TAAAGAAAACTCAAAGAGAATT
50949071 TTTCACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (24 bp):
TAAAGAAAACTCAAAGAGAATTCT
Found at i:50968780 original size:13 final size:14
Alignment explanation
Indices: 50968762--50968790 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
50968752 ATAATATAAC
50968762 TATATTTAAT-ATT
1 TATATTTAATAATT
50968775 TATATTTAATAATT
1 TATATTTAATAATT
50968789 TA
1 TA
50968791 GTAAATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATTTAATAATT
Found at i:50969626 original size:21 final size:21
Alignment explanation
Indices: 50969602--50969654 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
50969592 CATTGTTTCT
50969602 AATCTCACCGCTACAGT-ATCC
1 AATCTCACCGCTACAGTAAT-C
*
50969623 AATCTCACCGCTACAGTAATT
1 AATCTCACCGCTACAGTAATC
50969644 AATCTCACCGC
1 AATCTCACCGC
50969655 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAATC
Found at i:50971214 original size:25 final size:24
Alignment explanation
Indices: 50971175--50971266 Score: 80
Period size: 23 Copynumber: 3.6 Consensus size: 24
50971165 CATAAAAAAT
*
50971175 TAAATT-TTTTTAAATAATTAATA
1 TAAATTATTTTAAAATAATTAATA
50971198 TAAATTACTTTTAAAATAATTAACATA
1 TAAATTA-TTTTAAAATAATT-A-ATA
* *
50971225 AAAATTCAATATTTTTAAATAATTAATA
1 TAAA-T---TATTTTAAAATAATTAATA
50971253 TAAA-TATTTTAAAA
1 TAAATTATTTTAAAA
50971267 ATCATATTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
23 15 0.27
25 12 0.21
26 1 0.02
27 6 0.11
28 7 0.12
29 1 0.02
30 12 0.21
31 2 0.04
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
TAAATTATTTTAAAATAATTAATA
Found at i:50971240 original size:55 final size:54
Alignment explanation
Indices: 50971162--50971266 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 54
50971152 TATTGGTGCA
*
50971162 TAACATAAAAAATTAAATTTTTTTAAATAATTAATATAAATTACTTTTAAAATAAT
1 TAACATAAAAAATTAAATATTTTTAAATAATTAATATAAA-TA-TTTTAAAATAAT
*
50971218 TAACAT-AAAAATTCAATATTTTTAAATAATTAATATAAATATTTTAAAA
1 TAACATAAAAAATTAAATATTTTTAAATAATTAATATAAATATTTTAAAA
50971267 ATCATATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 8 0.17
54 2 0.04
55 31 0.66
56 6 0.13
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (54 bp):
TAACATAAAAAATTAAATATTTTTAAATAATTAATATAAATATTTTAAAATAAT
Found at i:50972346 original size:15 final size:15
Alignment explanation
Indices: 50972326--50972356 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50972316 AAAATCAAAC
50972326 TGTATTATAATTTCA
1 TGTATTATAATTTCA
50972341 TGTATTATAATTTCA
1 TGTATTATAATTTCA
50972356 T
1 T
50972357 ACATGATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TGTATTATAATTTCA
Found at i:50980062 original size:24 final size:25
Alignment explanation
Indices: 50980012--50980062 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
50980002 ATTTTTAGAA
*
50980012 AAATTAATTTTGATCAAGTAAAATT
1 AAATTAATTTAGATCAAGTAAAATT
* *
50980037 AAATTAA-TTAGATTAATTAAAATT
1 AAATTAATTTAGATCAAGTAAAATT
50980061 AA
1 AA
50980063 TATGATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (25 bp):
AAATTAATTTAGATCAAGTAAAATT
Found at i:50980495 original size:37 final size:36
Alignment explanation
Indices: 50980454--50980551 Score: 102
Period size: 37 Copynumber: 2.8 Consensus size: 36
50980444 AAATATTATT
*
50980454 TTAATAGTTTAATATTAAATTTAATTTAATAACTATC
1 TTAATAGTTTAATATTAAATTTAATTTAATAAC-ATA
*
50980491 TTAATAGTATT-TTATT-AATTTAATATT-A-AACATA
1 TTAATAGT-TTAATATTAAATTTAAT-TTAATAACATA
50980525 TT-AT-G-TTAATATTAAATTTAATTTAAT
1 TTAATAGTTTAATATTAAATTTAATTTAAT
50980552 GTTTATATTG
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
30 2 0.04
31 6 0.12
32 10 0.19
33 2 0.04
34 4 0.08
35 3 0.06
36 9 0.17
37 14 0.27
38 2 0.04
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (36 bp):
TTAATAGTTTAATATTAAATTTAATTTAATAACATA
Found at i:51004045 original size:24 final size:24
Alignment explanation
Indices: 51004013--51004062 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
51004003 TTGAATAAAC
51004013 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
51004037 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
51004061 TT
1 TT
51004063 TTTTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:51009449 original size:36 final size:36
Alignment explanation
Indices: 51009409--51009484 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
51009399 TGAAACATAG
*
51009409 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
51009445 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
51009482 AAA
1 AAA
51009485 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:51010055 original size:19 final size:19
Alignment explanation
Indices: 51010031--51010067 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51010021 AATGATATAT
51010031 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
51010050 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
51010068 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51010075 original size:17 final size:19
Alignment explanation
Indices: 51010034--51010075 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
51010024 GATATATTCT
*
51010034 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
51010053 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
51010070 AAGATT
1 AAGATT
51010076 ATGTTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:51010373 original size:24 final size:24
Alignment explanation
Indices: 51010341--51010390 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
51010331 TTGAATAAAC
51010341 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
51010365 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
51010389 TT
1 TT
51010391 TTTTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:51020476 original size:79 final size:78
Alignment explanation
Indices: 51020352--51020575 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
51020342 GCTACTCGTT
* *
51020352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTGACTCGCACAAATGCCTTCAGGACTTAGCCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCG
*
51020416 G-TTATAGTAACTCGCA
63 GAAT-TAGTAACTCGCA
* *
51020432 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAA
51020497 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * * * *
51020510 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCCG
51020574 GA
63 GA
51020576 CATCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 38 0.30
79 55 0.43
80 34 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:51020575 original size:40 final size:40
Alignment explanation
Indices: 51020333--51020575 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
51020323 CGGAATTTAA
** *
51020333 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51020373 CCGGTTATAGTGACTCGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51020413 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51020452 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51020491 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51020531 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51020571 CCGGA
1 CCGGA
51020576 CATCATTCAA
Statistics
Matches: 179, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 70 0.39
40 95 0.53
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51028655 original size:119 final size:120
Alignment explanation
Indices: 51028477--51028701 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
51028467 GCTACTCGTT
* * *
51028477 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
51028542 TTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
51028597 CAAATGCCTTCGAG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGAGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
* * *
51028659 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51028702 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 67 0.73
120 21 0.23
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51028701 original size:40 final size:40
Alignment explanation
Indices: 51028458--51028701 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
51028448 CGGAATTTAA
** *
51028458 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51028498 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51028538 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51028578 CCGGATTTAGTAACTCGCACAAATGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51028617 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51028657 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51028697 CCGGA
1 CCGGA
51028702 CATCATTCAA
Statistics
Matches: 180, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.19
40 133 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51031780 original size:30 final size:30
Alignment explanation
Indices: 51031746--51031808 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
51031736 GCAAGTGAAC
*
51031746 CATTTGTTTATTTACATGTATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
51031776 CATTTGTTTATTTACATGCATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
51031806 CAT
1 CAT
51031809 GTCTATAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (30 bp):
CATTTGTTTATTTACATGCATTAGTGTATA
Found at i:51035068 original size:22 final size:22
Alignment explanation
Indices: 51035043--51035084 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
51035033 ACGAGTCTTT
51035043 CTCTTAGTCCCACTAAAAAGTC
1 CTCTTAGTCCCACTAAAAAGTC
*
51035065 CTCTTAGTCCTACTAAAAAG
1 CTCTTAGTCCCACTAAAAAG
51035085 AACGTAGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (22 bp):
CTCTTAGTCCCACTAAAAAGTC
Found at i:51035518 original size:15 final size:15
Alignment explanation
Indices: 51035498--51035526 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51035488 GAAAAAGGTG
51035498 CAGATCACCCACATA
1 CAGATCACCCACATA
51035513 CAGATCACCCACAT
1 CAGATCACCCACAT
51035527 GTTGGTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.07, T:0.14
Consensus pattern (15 bp):
CAGATCACCCACATA
Found at i:51037924 original size:41 final size:41
Alignment explanation
Indices: 51037879--51037984 Score: 194
Period size: 41 Copynumber: 2.6 Consensus size: 41
51037869 ACTGACTTTT
51037879 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
51037920 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
* *
51037961 AGCCTGCTAGACATAAAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAA
51037985 TCATCTCACT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTTTCACCGGCATCA
Found at i:51051961 original size:32 final size:32
Alignment explanation
Indices: 51051925--51052001 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 32
51051915 AACTTTTCCG
* ** *
51051925 GAAAATATTTTCAGAAAATCTGTCAAACAGCA
1 GAAAATATTTTCACAAAATCAATCAAACACCA
* *
51051957 GAAAATATTTTACACAGATTCAATCAAACACCA
1 GAAAATATTTT-CACAAAATCAATCAAACACCA
51051990 GAAAATATTTTC
1 GAAAATATTTTC
51052002 CTGTAAGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 12 0.32
33 26 0.68
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (32 bp):
GAAAATATTTTCACAAAATCAATCAAACACCA
Found at i:51052049 original size:34 final size:35
Alignment explanation
Indices: 51051991--51052057 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
51051981 CAAACACCAG
* * *
51051991 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
51052026 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
51052058 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:51057114 original size:30 final size:30
Alignment explanation
Indices: 51057039--51057116 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 30
51057029 ACGATTCGGG
51057039 TTTAATTGATTTTTTAAAATTATTTTATAAGAA
1 TTTAATTGA-TTTTT--AATTATTTTATAAGAA
* * *
51057072 TTTAATTAATTTTTAATTATTTTATGAG-T
1 TTTAATTGATTTTTAATTATTTTATAAGAA
51057101 TCTTAATTGATTTTTA
1 T-TTAATTGATTTTTA
51057117 GAAATGATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 26 0.65
32 5 0.12
33 8 0.20
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.59
Consensus pattern (30 bp):
TTTAATTGATTTTTAATTATTTTATAAGAA
Found at i:51057176 original size:23 final size:23
Alignment explanation
Indices: 51057132--51057193 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
51057122 GATAAAAAAT
*
51057132 TTATAAAAAACT-ATTTAA-AACA
1 TTATAAAAAA-TGAATTAAGAACA
51057154 TTATAAAAAATGAATTAAGAACA
1 TTATAAAAAATGAATTAAGAACA
51057177 --AT-AAAAATG-ATTAAGAA
1 TTATAAAAAATGAATTAAGAA
51057194 TTTATTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 8 0.22
20 7 0.19
21 3 0.08
22 15 0.41
23 4 0.11
ACGTcount: A:0.61, C:0.05, G:0.06, T:0.27
Consensus pattern (23 bp):
TTATAAAAAATGAATTAAGAACA
Found at i:51058162 original size:26 final size:29
Alignment explanation
Indices: 51058119--51058182 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 29
51058109 ATCTAACTTG
*
51058119 TATAATTTTTCTACAATTTTCT-AT-TTT
1 TATAATTTTTCTACAATTTTATAATATTT
51058146 TATAA-TTTTCT-CAAATTTTATAATATTT
1 TATAATTTTTCTAC-AATTTTATAATATTT
51058174 TAATAATTT
1 T-ATAATTT
51058183 CTAAACTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 1 0.03
26 13 0.42
27 7 0.23
28 4 0.13
29 4 0.13
30 2 0.06
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (29 bp):
TATAATTTTTCTACAATTTTATAATATTT
Found at i:51061300 original size:30 final size:26
Alignment explanation
Indices: 51061231--51061295 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
51061221 AGAAAACCAG
51061231 AAATAATTTTCTTACTTTCAGTAAGA
1 AAATAATTTTCTTACTTTCAGTAAGA
51061257 AAATAATTTTCTTACTTTCAGTAAGA
1 AAATAATTTTCTTACTTTCAGTAAGA
51061283 AAATAATTTTCTT
1 AAATAATTTTCTT
51061296 TCTTAATAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (26 bp):
AAATAATTTTCTTACTTTCAGTAAGA
Found at i:51061749 original size:16 final size:17
Alignment explanation
Indices: 51061728--51061762 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
51061718 AATTAATTTA
*
51061728 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
51061744 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
51061761 AA
1 AA
51061763 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:51064517 original size:18 final size:17
Alignment explanation
Indices: 51064484--51064522 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
51064474 TTGTATAAAT
51064484 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
51064502 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
51064519 TGTG
1 TGTG
51064523 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:51064783 original size:23 final size:23
Alignment explanation
Indices: 51064756--51064853 Score: 171
Period size: 23 Copynumber: 4.3 Consensus size: 23
51064746 AGTGTTATTG
51064756 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
51064779 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
51064802 -TCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
51064824 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
51064847 ATCAGTG
1 ATCAGTG
51064854 TGGCACTTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
22 21 0.30
23 50 0.70
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:51064821 original size:45 final size:46
Alignment explanation
Indices: 51064756--51064853 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 46
51064746 AGTGTTATTG
* *
51064756 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
51064802 -TCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
51064847 ATCAGTG
1 ATCAGTG
51064854 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 43 0.88
46 6 0.12
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:51073067 original size:18 final size:19
Alignment explanation
Indices: 51073032--51073073 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51073022 GGTTTTCGTA
* *
51073032 TATTTTTTTTGTTCAAATT
1 TATTTTTCTGGTTCAAATT
51073051 TATTTTTCTGGTT-AAATT
1 TATTTTTCTGGTTCAAATT
51073069 T-TTTT
1 TATTTT
51073074 ATAAAATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 6 0.29
19 11 0.52
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (19 bp):
TATTTTTCTGGTTCAAATT
Found at i:51073851 original size:12 final size:12
Alignment explanation
Indices: 51073836--51073890 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 12
51073826 AACAAATCCT
51073836 CTCTCAAATTTC
1 CTCTCAAATTTC
*
51073848 CTCTC-AATTTT
1 CTCTCAAATTTC
51073859 CTCTC-AATTTC
1 CTCTCAAATTTC
51073870 CT-TCCAAATTT-
1 CTCT-CAAATTTC
*
51073881 ATCTCAAATT
1 CTCTCAAATT
51073891 CATATTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.03
11 25 0.68
12 11 0.30
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:51073861 original size:23 final size:23
Alignment explanation
Indices: 51073835--51073890 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
51073825 AAACAAATCC
*
51073835 TCTCTCAAATTTCC-TCTCAATTT
1 TCTCTCAAATTTCCTTC-CAAATT
51073858 TCTCTC-AATTTCCTTCCAAATT
1 TCTCTCAAATTTCCTTCCAAATT
*
51073880 TATCTCAAATT
1 TCTCTCAAATT
51073891 CATATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 17 0.59
23 12 0.41
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (23 bp):
TCTCTCAAATTTCCTTCCAAATT
Found at i:51073948 original size:51 final size:51
Alignment explanation
Indices: 51073849--51073948 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
51073839 TCAAATTTCC
** * *
51073849 TCTCAATTTTCTCTCAATTTCCTTCCAAATTTATCTCAAATTCATATTTAA
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
** * * *
51073900 TCTCAATTAGCTCTCAATTTCCTTTTAAATCTCTCTTAAATCCCTATTT
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTT
51073949 TTTAAATAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.01, T:0.47
Consensus pattern (51 bp):
TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
Found at i:51076605 original size:51 final size:51
Alignment explanation
Indices: 51076433--51076776 Score: 342
Period size: 51 Copynumber: 6.8 Consensus size: 51
51076423 CTTTAATCAT
* * * * *
51076433 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACTTGATCA-AGTTT-
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
51076482 TACTG-TTCACGTAGTAGCCTTCACATAGTACTACACA-GTGATCA-AAGCTTT-
1 T-C-GATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA--TTTA
* * ** * * * *
51076533 TCGGTACACATAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* *
51076584 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTC
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA-TTTA
* * ** * *
51076635 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
51076686 TCGATACATGTAGTAGCCTTCACACAATACTACACACGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
*
51076737 CCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
51076777 TTCATCGATA
Statistics
Matches: 246, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
49 9 0.04
50 64 0.26
51 171 0.70
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
Found at i:51076664 original size:102 final size:102
Alignment explanation
Indices: 51076489--51076729 Score: 403
Period size: 102 Copynumber: 2.4 Consensus size: 102
51076479 TTTTACTGTT
* * *
51076489 CACGTAGTAGCCTTCACATAGTACTACACA-GTGATCAAAGCTTTTCGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
*
51076553 CACTTAGTACTAAACATGTGGCCATCATTTATCGATA
66 CACTTAGTACTAAACATGTGACCATCATTTATCGATA
51076590 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
* *
51076655 CACTTAGTACTACACATGTGACCATTATTTATCGATA
66 CACTTAGTACTAAACATGTGACCATCATTTATCGATA
* *
51076692 CATGTAGTAGCCTTCACACAATACTACACACGTGACCA
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
51076730 TTATTTACCG
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
101 29 0.22
102 102 0.78
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (102 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTT
CACTTAGTACTAAACATGTGACCATCATTTATCGATA
Found at i:51076742 original size:153 final size:150
Alignment explanation
Indices: 51076434--51076776 Score: 420
Period size: 153 Copynumber: 2.3 Consensus size: 150
51076424 TTTAATCATT
* * * * * * * *
51076434 CGATACTCGTAGTAGCCTTCACATAGTACTACACACTTGATCAAGTTTTACTGTTCACGTAGTAG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTAG
* * ** *
51076499 CCTTCACATAGTACTACACAGTGATCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTACT
66 CCTTCACATAGTACTACACAGTGACCAAA-CTTTTCGATACACATAGTAGCCTTCACACAATACT
* * *
51076564 AAACATGTGGCCATCATTTAT
130 AAACACGTGACCATCATTTAC
51076585 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGTACACATAGT
* * **
51076649 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTATCGATACATGTAGTAGCCTTCACACAA
64 AGCCTTCACATAGTACTACACA-GTGACCA-AACTTT-TCGATACACATAGTAGCCTTCACACAA
* *
51076713 TACTACACACGTGACCATTATTTAC
126 TACTAAACACGTGACCATCATTTAC
51076738 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
51076777 TTCATCGATA
Statistics
Matches: 165, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
151 38 0.23
152 37 0.22
153 89 0.54
154 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (150 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTAG
CCTTCACATAGTACTACACAGTGACCAAACTTTTCGATACACATAGTAGCCTTCACACAATACTA
AACACGTGACCATCATTTAC
Found at i:51076745 original size:102 final size:102
Alignment explanation
Indices: 51076433--51076772 Score: 386
Period size: 102 Copynumber: 3.4 Consensus size: 102
51076423 CTTTAATCAT
* * * * *** *
51076433 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACT-TGATCAAGTTTTA-CTG-TTCACGTA
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACA-TGTGACCATCATTTATC-GATACACGTA
* * * *
51076495 GTAGCCTTCACATAGTACTACACA-GTGATCAAAGCTTT
64 GTAGCCTTCACACAATACTACACACGTGACCAAAGCTTC
* * *
51076533 TCGGTACACATAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTATCGATACACGTAGT
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
*
51076598 AGCCTTCACACAGTACTACACACGTGACCAAAGCTTC
66 AGCCTTCACACAATACTACACACGTGACCAAAGCTTC
* * *
51076635 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACATGTAGT
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
* *
51076700 AGCCTTCACACAATACTACACACGTGACCATTA-TTTAC
66 AGCCTTCACACAATACTACACACGTGACCA-AAGCTT-C
* **
51076738 -CGATACACGTAGTAGCCTTCACACAGTACTACACA
1 TCGATACACATAGTAGCCTTCACTTAGTACTACACA
51076773 CGTGTTCATC
Statistics
Matches: 209, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
99 1 0.00
100 40 0.19
101 31 0.15
102 135 0.65
103 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (102 bp):
TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAGT
AGCCTTCACACAATACTACACACGTGACCAAAGCTTC
Found at i:51079436 original size:18 final size:18
Alignment explanation
Indices: 51079409--51079448 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
51079399 CAGGTGCATT
* *
51079409 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
51079427 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
51079445 TCCT
1 TCCT
51079449 TTTCCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:51080015 original size:22 final size:21
Alignment explanation
Indices: 51080003--51080314 Score: 164
Period size: 22 Copynumber: 14.0 Consensus size: 21
51079993 CCTTAAACTT
51080003 TTAAACTAAAAACCCTAACCC
1 TTAAACTAAAAACCCTAACCC
*
51080024 TT-AACTTAAAAACCCTAACCT
1 TTAAAC-TAAAAACCCTAACCC
* *
51080045 TTAAATTAAAAACCATAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
51080067 TTAAGCTAAAAACCGTAACCC
1 TTAAACTAAAAACCCTAACCC
*
51080088 -TAAACCCCAAAACTAAAAACCCTACACAC
1 TTAAA---C-----TAAAAACCCTA-ACCC
*
51080117 -TAAACTTAAAACCCTAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
51080138 TTAACCTAAAAACCCTAAACC
1 TTAAACTAAAAACCCTAACCC
* *
51080159 ATAAACCTAAAAATCCTAACCC
1 TTAAA-CTAAAAACCCTAACCC
* * *
51080181 TCAACCTAAAAATTGTAACCCTAAACC
1 TTAAACT--AAA----AACCCTAACCC
* ** * *
51080208 TCAAACCTAAAAACCCTAACCC
1 TTAAACTAAAAACCCT-AACCC
*
51080230 TTAACCTAAAAACCCTAAACCC
1 TTAAACTAAAAACCCT-AACCC
* *
51080252 CTAACCTAAAAACCCTAACCC
1 TTAAACTAAAAACCCTAACCC
* * *
51080273 TCAACCTAAAAACCTTAAACCC
1 TTAAACTAAAAACCCT-AACCC
51080295 TT-AACATAAAAACCCTAACC
1 TTAAAC-TAAAAACCCTAACC
51080315 TAAAGGCTTA
Statistics
Matches: 223, Mismatches: 44, Indels: 48
0.71 0.14 0.15
Matches are distributed among these distances:
20 6 0.03
21 81 0.36
22 98 0.44
23 4 0.02
25 2 0.01
26 1 0.00
27 14 0.06
28 10 0.04
29 7 0.03
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (21 bp):
TTAAACTAAAAACCCTAACCC
Found at i:51080033 original size:21 final size:21
Alignment explanation
Indices: 51080003--51080314 Score: 239
Period size: 21 Copynumber: 14.0 Consensus size: 21
51079993 CCTTAAACTT
*
51080003 TTAAACTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
51080024 TTAACTTAAAAACCCTAACCT
1 TTAACCTAAAAACCCTAACCC
** *
51080045 TTAAATTAAAAACCATAAACCC
1 TTAACCTAAAAACCCT-AACCC
* *
51080067 TTAAGCTAAAAACCGTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
51080088 TAAACCCCAAAACTAAAAACCCTACACAC
1 TTAA---C----CTAAAAACCCTA-ACCC
* *
51080117 -TAAACTTAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
51080138 TTAACCTAAAAACCCTAAACCA
1 TTAACCTAAAAACCCT-AACCC
* *
51080160 TAAACCTAAAAATCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
51080181 TCAACCTAAAAATTGTAACCCTAAACC
1 TTAACCT--AAA----AACCCTAACCC
*
51080208 TCAAACCTAAAAACCCTAACCC
1 T-TAACCTAAAAACCCTAACCC
51080230 TTAACCTAAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
51080252 CTAACCTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
51080273 TCAACCTAAAAACCTTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
51080295 TTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAACC
51080315 TAAAGGCTTA
Statistics
Matches: 235, Mismatches: 36, Indels: 40
0.76 0.12 0.13
Matches are distributed among these distances:
21 99 0.42
22 99 0.42
23 3 0.01
26 3 0.01
27 10 0.04
28 18 0.08
29 3 0.01
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (21 bp):
TTAACCTAAAAACCCTAACCC
Found at i:51080067 original size:43 final size:43
Alignment explanation
Indices: 51080003--51080314 Score: 270
Period size: 43 Copynumber: 7.0 Consensus size: 43
51079993 CCTTAAACTT
* * *
51080003 TTAAACTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACCT
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
** * * *
51080045 TTAAATTAAAAACCATAAACCCTTAAGCTAAAAACCGTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* * * * *
51080088 TAAACCCCAAAACTAAAAACCCTACACAC-TAAACTTAAAACCCTAAACCC
1 TTAA---C----CTAAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCC
* * *
51080138 TTAACCTAAAAACCCTAAACCATAAACCTAAAAATCCTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* *
51080181 TCAACCTAAAAATTGTAACCCTAAA-CCTCAAACCTAAAAACCCTAACCC
1 TTAACCT--AAA----AACCCTAAACCCT-TAACCTAAAAACCCTAACCC
*
51080230 TTAACCTAAAAACCCTAAACCCCTAACCTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
* * *
51080273 TCAACCTAAAAACCTTAAACCCTTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACC
51080315 TAAAGGCTTA
Statistics
Matches: 219, Mismatches: 33, Indels: 35
0.76 0.11 0.12
Matches are distributed among these distances:
42 14 0.06
43 116 0.53
44 13 0.06
45 3 0.01
47 4 0.02
48 2 0.01
49 46 0.21
50 21 0.10
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (43 bp):
TTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCC
Found at i:51080086 original size:28 final size:28
Alignment explanation
Indices: 51080055--51080108 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
51080045 TTAAATTAAA
** *
51080055 AACCATAAACCCTTAAGCTAAAAACCGT
1 AACCATAAACCCCAAAACTAAAAACCGT
*
51080083 AACCCTAAACCCCAAAACTAAAAACC
1 AACCATAAACCCCAAAACTAAAAACC
51080109 CTACACACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.50, C:0.33, G:0.04, T:0.13
Consensus pattern (28 bp):
AACCATAAACCCCAAAACTAAAAACCGT
Found at i:51080138 original size:114 final size:111
Alignment explanation
Indices: 51080003--51080318 Score: 370
Period size: 114 Copynumber: 2.8 Consensus size: 111
51079993 CCTTAAACTT
* *
51080003 TTAAACTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACCTTTAAATTAAAAACCATAAACCC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACC-TTAAACTAAAAACC-TAAACCC
51080067 TTAAGCTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTACACAC
64 TTAA-CTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTA-ACAC
* *
51080117 -TAAACTTAAAACCCTAAACCCTTAACCTAAAAACCCTAAACCATAAACCTAAAAATCCT-AACC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCTTAAA-CTAAAAA-CCTAAACC
* ** * * *
51080180 CTCAACCTAAAAATTGTAACCCTAAACCTCAAACCTAAAAACCCTAACCC
63 CTTAA-CTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTAACAC
* * * *
51080230 TTAACCTAAAAACCCTAAACCCCTAACCTAAAAACCCTAACCCTCAACCTAAAAACCTTAAACCC
1 TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAA-CCTTAAACTAAAAACC-TAAACCC
*
51080295 TTAACATAAAAACCCTAA-CCTAAA
64 TTAAC-TAAAAACCGTAACCCTAAA
51080319 GGCTTAAAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
112 2 0.01
113 34 0.20
114 123 0.72
115 11 0.06
116 2 0.01
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (111 bp):
TTAAACTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCTTAAACTAAAAACCTAAACCCTT
AACTAAAAACCGTAACCCTAAACCCCAAAACTAAAAACCCTAACAC
Found at i:51083587 original size:125 final size:124
Alignment explanation
Indices: 51083344--51083716 Score: 532
Period size: 125 Copynumber: 3.0 Consensus size: 124
51083334 CAAACATGCT
*
51083344 ACTGTAACAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
* *
51083409 GAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTTCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTT-TTTCAGGACCA
* * * * * * ** *
51083469 ACTGTAGCAGAAGAGCGTCCACGAGGGTACGATTTCAGAAATTCTTCTCAGATCGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
* * * *
51083534 GAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTTCAGGACCT
66 GAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACCA
* * *
51083594 ACTGTAGCAAAACCGCCTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAG-T
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCT-GCT
*
51083658 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAAGACC
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACC
51083717 CAAAAAATCC
Statistics
Matches: 214, Mismatches: 32, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
124 48 0.22
125 128 0.60
126 38 0.18
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACCA
Found at i:51084213 original size:16 final size:15
Alignment explanation
Indices: 51084191--51084233 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
51084181 AAATTTTACA
*
51084191 AATTAAAAAATAATT
1 AATTAAAAAATAAAT
51084206 ATATT-AAAAATAAAT
1 A-ATTAAAAAATAAAT
51084221 AATATAAAAAATA
1 AAT-TAAAAAATA
51084234 TTCTATCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AATTAAAAAATAAAT
Found at i:51084216 original size:15 final size:15
Alignment explanation
Indices: 51084194--51084233 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
51084184 TTTTACAAAT
*
51084194 TAAAAAATAATTATA
1 TAAAAAATAATAATA
*
51084209 TTAAAAATAAATAATA
1 TAAAAAAT-AATAATA
51084225 TAAAAAATA
1 TAAAAAATA
51084234 TTCTATCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAAAATAATAATA
Found at i:51085301 original size:24 final size:24
Alignment explanation
Indices: 51085271--51085319 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
51085261 ATTTTATATC
*
51085271 TATAATTTTATATTTTACATTGCT
1 TATAATTTTATATTTTAAATTGCT
51085295 TATAATTTTATATTTTAAATTGCT
1 TATAATTTTATATTTTAAATTGCT
51085319 T
1 T
51085320 TTACATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (24 bp):
TATAATTTTATATTTTAAATTGCT
Found at i:51085731 original size:18 final size:18
Alignment explanation
Indices: 51085693--51085728 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
51085683 TTATTATTTT
*
51085693 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
51085711 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
51085729 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:51090684 original size:7 final size:7
Alignment explanation
Indices: 51090672--51090697 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51090662 CAATGAGACC
51090672 AGTTCCA
1 AGTTCCA
51090679 AGTTCCA
1 AGTTCCA
51090686 AGTTCCA
1 AGTTCCA
51090693 AGTTC
1 AGTTC
51090698 TAACCAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (7 bp):
AGTTCCA
Found at i:51091695 original size:9 final size:9
Alignment explanation
Indices: 51091673--51091728 Score: 53
Period size: 9 Copynumber: 5.9 Consensus size: 9
51091663 TACTATATCA
51091673 ATAAATAATT
1 ATAAA-AATT
51091683 -TAAAAATT
1 ATAAAAATT
51091691 ATAAAAA-T
1 ATAAAAATT
51091699 ATTAAAAATAT
1 A-TAAAAAT-T
51091710 ATAAAAAGTT
1 ATAAAAA-TT
51091720 CATAAAAAT
1 -ATAAAAAT
51091729 CCAAAAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 8 0.20
11 10 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:51091702 original size:11 final size:10
Alignment explanation
Indices: 51091683--51091716 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
51091673 ATAAATAATT
51091683 TAAAAAT-TA
1 TAAAAATATA
51091692 TAAAAATAT-
1 TAAAAATATA
51091701 TAAAAATATA
1 TAAAAATATA
51091711 TAAAAA
1 TAAAAA
51091717 GTTCATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:51091712 original size:19 final size:17
Alignment explanation
Indices: 51091673--51091716 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
51091663 TACTATATCA
51091673 ATAAATAATTTAAAAATT
1 ATAAA-AATTTAAAAATT
51091691 ATAAAAATATTAAAAATAT
1 ATAAAAAT-TTAAAAAT-T
51091710 ATAAAAA
1 ATAAAAA
51091717 GTTCATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.12
18 13 0.54
19 8 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAATTTAAAAATT
Found at i:51095743 original size:28 final size:28
Alignment explanation
Indices: 51095712--51095766 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
51095702 CATTTTAACT
*
51095712 TTTTAGAATT-TTTTGTTTTCATATAATG
1 TTTTAGAATTATTTTATTTT-ATATAATG
*
51095740 TTTTATAATTATTTTATTTTATATAAT
1 TTTTAGAATTATTTTATTTTATATAAT
51095767 TGATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (28 bp):
TTTTAGAATTATTTTATTTTATATAATG
Found at i:51096867 original size:28 final size:28
Alignment explanation
Indices: 51096810--51096867 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
51096800 ATAAGCAATT
* *
51096810 AATTATGTTTTAAATATAAAAAAATTAA
1 AATTATGTTTAAAATATAAAAAAATGAA
*
51096838 AATTAT-TTTAAAAGTATAAAAATATGAA
1 AATTATGTTTAAAA-TATAAAAAAATGAA
51096866 AA
1 AA
51096868 AAAATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (28 bp):
AATTATGTTTAAAATATAAAAAAATGAA
Found at i:51100966 original size:22 final size:22
Alignment explanation
Indices: 51100936--51100992 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
51100926 TTAATTTTCA
*
51100936 TATACATATATATATACCTTAT
1 TATAAATATATATATACCTTAT
* * *
51100958 TATAAATATCTTTATATCTTAT
1 TATAAATATATATATACCTTAT
**
51100980 TATGTATATATAT
1 TATAAATATATAT
51100993 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.51
Consensus pattern (22 bp):
TATAAATATATATATACCTTAT
Found at i:51100987 original size:26 final size:25
Alignment explanation
Indices: 51100954--51101003 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
51100944 TATATATACC
*
51100954 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
51100979 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
51101004 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:51101258 original size:39 final size:41
Alignment explanation
Indices: 51101215--51101294 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 41
51101205 TATCTCATGA
* * *
51101215 TTTTAAATATATATATACATATGT-TCTTCT-TATTTTTAT
1 TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
** *
51101254 TTTTACGTATATACACACATATATATCTTTTATATTTTTAT
1 TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
51101295 AGTTTTATAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
39 19 0.58
40 5 0.15
41 9 0.27
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (41 bp):
TTTTAAATATATACACACATATATATCTTCTATATTTTTAT
Found at i:51103660 original size:16 final size:18
Alignment explanation
Indices: 51103634--51103668 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
51103624 TAAAATTGGG
51103634 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
51103651 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
51103668 T
1 T
51103669 AAATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:51104296 original size:15 final size:15
Alignment explanation
Indices: 51104276--51104308 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51104266 AGTATACTTG
*
51104276 TTATTTTAAATAATA
1 TTATTTTAAATAAAA
51104291 TTATTTTAAATAAAA
1 TTATTTTAAATAAAA
51104306 TTA
1 TTA
51104309 GATTATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATTTTAAATAAAA
Done.