Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 194 of 199
Found at i:56287727 original size:21 final size:21
Alignment explanation
Indices: 56287697--56287744 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
56287687 AACAAATAGA
*
56287697 AAACACAAAGAAATTCTTGCC
1 AAACAAAAAGAAATTCTTGCC
*
56287718 AAACAAAAAGAAATTCTTGTC
1 AAACAAAAAGAAATTCTTGCC
56287739 AAACAA
1 AAACAA
56287745 CTTTGCTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.19, G:0.08, T:0.19
Consensus pattern (21 bp):
AAACAAAAAGAAATTCTTGCC
Found at i:56289243 original size:20 final size:20
Alignment explanation
Indices: 56289209--56289250 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
56289199 AACTATTTAA
** *
56289209 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
56289229 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
56289249 AT
1 AT
56289251 GTATTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:56299486 original size:19 final size:20
Alignment explanation
Indices: 56299464--56299516 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
56299454 GTATAAACTT
56299464 ATAAAAATTATAAAATTT-A
1 ATAAAAATTATAAAATTTCA
*
56299483 ATAAAATATTA-AAACTTTCA
1 ATAAAA-ATTATAAAATTTCA
*
56299503 AT-AAATTTATAAAA
1 ATAAAAATTATAAAA
56299517 AAATATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 3 0.11
19 18 0.64
20 7 0.25
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAAAAATTATAAAATTTCA
Found at i:56299486 original size:27 final size:27
Alignment explanation
Indices: 56299436--56299487 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
56299426 ATATTAAAAA
*
56299436 TATAAAAAGTAAAAATTTGTATAAACT
1 TATAAAAAGTAAAAATTTGAATAAACT
*
56299463 TATAAAAATTATAAAATTT-AATAAA
1 TATAAAAAGTA-AAAATTTGAATAAA
56299488 ATATTAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (27 bp):
TATAAAAAGTAAAAATTTGAATAAACT
Found at i:56299495 original size:27 final size:27
Alignment explanation
Indices: 56299432--56299496 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
56299422 TTACATATTA
*
56299432 AAAATA-TAAAAAGTAAAAATTTGTAT
1 AAAATATTAAAAAGTAAAAATTTGAAT
* *
56299458 AAACT-TATAAAAATTATAAAATTT-AAT
1 AAAATAT-TAAAAAGTA-AAAATTTGAAT
56299485 AAAATATTAAAA
1 AAAATATTAAAA
56299497 CTTTCAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
26 4 0.13
27 19 0.61
28 8 0.26
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (27 bp):
AAAATATTAAAAAGTAAAAATTTGAAT
Found at i:56299556 original size:19 final size:19
Alignment explanation
Indices: 56299534--56299592 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
56299524 AAAAAATTCA
*
56299534 TAAAAACTTATAAATATTT
1 TAAAAGCTTATAAATATTT
* *
56299553 T-AAAGCTTATGAATA-AT
1 TAAAAGCTTATAAATATTT
*
56299570 TATAAAGCTTATAAAAATTT
1 TA-AAAGCTTATAAATATTT
56299590 TAA
1 TAA
56299593 TAAGAGGGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
17 2 0.06
18 12 0.39
19 14 0.45
20 3 0.10
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAAAGCTTATAAATATTT
Found at i:56299561 original size:18 final size:18
Alignment explanation
Indices: 56299540--56299592 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 18
56299530 TTCATAAAAA
56299540 CTTATAAATATTTTAAAG
1 CTTATAAATATTTTAAAG
* *
56299558 CTTATGAATAATTATAAAG
1 CTTATAAAT-ATTTTAAAG
*
56299577 CTTATAAAAATTTTAA
1 CTTATAAATATTTTAA
56299593 TAAGAGGGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
CTTATAAATATTTTAAAG
Found at i:56299993 original size:5 final size:5
Alignment explanation
Indices: 56299983--56300007 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
56299973 AAAACAAACA
56299983 TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT
56300008 AAACCTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:56302419 original size:70 final size:70
Alignment explanation
Indices: 56302315--56302456 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
56302305 ATTTCCCTTC
56302315 TACTTCCCAAGACATTCAAGCTAAGCTAGGGAGAATAGGAGGAAACTGTCAAGAACTACTTGAAA
1 TACTTCCCAAGACATTCAAGCTAAGCTAGGGAGAATAGGAGGAAACTGTCAAGAACTACTTGAAA
56302380 AATAT
66 AATAT
56302385 TACTTCCCAAGACATTCAAGCTAAGCTAGGGAGAATAGGAGGAAACTGTCAAGAACTACTTGAAA
1 TACTTCCCAAGACATTCAAGCTAAGCTAGGGAGAATAGGAGGAAACTGTCAAGAACTACTTGAAA
56302450 AATAT
66 AATAT
56302455 TA
1 TA
56302457 ATTAATAGAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.22
Consensus pattern (70 bp):
TACTTCCCAAGACATTCAAGCTAAGCTAGGGAGAATAGGAGGAAACTGTCAAGAACTACTTGAAA
AATAT
Found at i:56303595 original size:23 final size:22
Alignment explanation
Indices: 56303569--56303618 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 22
56303559 AGTAAGTTGT
56303569 TGTACACCACATATATACAAGGG
1 TGTACACC-CATATATACAAGGG
*
56303592 TGTAACATCCATATATACAAGGG
1 TGT-ACACCCATATATACAAGGG
56303615 TGTA
1 TGTA
56303619 ACATATATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.80
24 4 0.16
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (22 bp):
TGTACACCCATATATACAAGGG
Found at i:56303619 original size:23 final size:23
Alignment explanation
Indices: 56303578--56303622 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
56303568 TTGTACACCA
56303578 CATATATACAAGGGTGTAACATC
1 CATATATACAAGGGTGTAACATC
56303601 CATATATACAAGGGTGTAACAT
1 CATATATACAAGGGTGTAACAT
56303623 ATATAGTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.27
Consensus pattern (23 bp):
CATATATACAAGGGTGTAACATC
Found at i:56303625 original size:19 final size:21
Alignment explanation
Indices: 56303576--56303627 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 21
56303566 TGTTGTACAC
56303576 CACATATATACAAGGGTGTAA
1 CACATATATACAAGGGTGTAA
56303597 CATCCATATATACAAGGGTGTAA
1 CA--CATATATACAAGGGTGTAA
*
56303620 CATATATA
1 CACATATA
56303628 GTCATATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 7 0.25
23 21 0.75
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (21 bp):
CACATATATACAAGGGTGTAA
Found at i:56307029 original size:30 final size:30
Alignment explanation
Indices: 56306961--56307035 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
56306951 TTAGGGCCTC
* * * *
56306961 AACTTCATAATTATTTTCGTATTAAGACTTA
1 AACTTGATAATT-TTTTCATATTAAAACCTA
*
56306992 AACTTGATAATTTTTTCATATTAAAACCTG
1 AACTTGATAATTTTTTCATATTAAAACCTA
* *
56307022 AATTTGATAGTTTT
1 AACTTGATAATTTT
56307036 CAAGGATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 26 0.70
31 11 0.30
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.47
Consensus pattern (30 bp):
AACTTGATAATTTTTTCATATTAAAACCTA
Found at i:56310063 original size:24 final size:24
Alignment explanation
Indices: 56310028--56310076 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
56310018 GAGGATGACC
* *
56310028 CAGAATTGGCAA-TTGCTTTGATAG
1 CAGAATTAGCAACTTG-TTTCATAG
56310052 CAGAATTAGCAACTTGTTTCATAG
1 CAGAATTAGCAACTTGTTTCATAG
56310076 C
1 C
56310077 CATATCTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (24 bp):
CAGAATTAGCAACTTGTTTCATAG
Found at i:56311578 original size:11 final size:11
Alignment explanation
Indices: 56311564--56311595 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
56311554 TTTTGAAAAA
56311564 TTTAATAATTT
1 TTTAATAATTT
56311575 TTTAATAATTT
1 TTTAATAATTT
56311586 TTTAA-AATTT
1 TTTAATAATTT
56311596 AATAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTAATAATTT
Found at i:56313927 original size:19 final size:20
Alignment explanation
Indices: 56313886--56313927 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
56313876 ATTTCTATGT
* *
56313886 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
56313906 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
56313925 CAT
1 CAT
56313928 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:56319233 original size:33 final size:33
Alignment explanation
Indices: 56319151--56319233 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
56319141 TGGTCCAACC
* ** *
56319151 ATGGTCTTACGTTTAAGGTGTCATAACCCAGTT
1 ATGGTCTTACATTTAAAATGTCATAACCCAGCT
* **
56319184 ATGGTCTTTTCA-TTAAAATGTCATGGCCCAGCT
1 ATGGTC-TTACATTTAAAATGTCATAACCCAGCT
56319217 ATGGTCTTACATTTAAA
1 ATGGTCTTACATTTAAA
56319234 CATTGCCATA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
32 4 0.10
33 33 0.82
34 3 0.08
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGTCATAACCCAGCT
Found at i:56323209 original size:7 final size:7
Alignment explanation
Indices: 56323198--56323236 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
56323188 ATAAATATAT
*
56323198 ATTTTTT
1 ATTTTTA
56323205 ATTTTTA
1 ATTTTTA
56323212 ATTTTTA
1 ATTTTTA
56323219 ATTTTTA
1 ATTTTTA
56323226 A-TTTTA
1 ATTTTTA
56323232 ATTTT
1 ATTTT
56323237 AAAATACTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
ATTTTTA
Found at i:56323285 original size:20 final size:22
Alignment explanation
Indices: 56323262--56323304 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
56323252 TATTTTTTTT
56323262 TATTTTTTT-TATTT-TTAAAA
1 TATTTTTTTGTATTTATTAAAA
*
56323282 TATTTTTTTGTGTTTATTAAAA
1 TATTTTTTTGTATTTATTAAAA
56323304 T
1 T
56323305 TCGAGCCGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 4 0.20
22 7 0.35
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
TATTTTTTTGTATTTATTAAAA
Found at i:56325160 original size:9 final size:8
Alignment explanation
Indices: 56325140--56325164 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
56325130 TTTCTTAAAC
56325140 TTTTTTAA
1 TTTTTTAA
56325148 TTTTTTAA
1 TTTTTTAA
56325156 TTTTTTAA
1 TTTTTTAA
56325164 T
1 T
56325165 CGGATTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTAA
Found at i:56338174 original size:15 final size:15
Alignment explanation
Indices: 56338154--56338186 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
56338144 AATCCTTTAA
56338154 AAACTA-TAAAAATAT
1 AAACTATTAAAAAT-T
56338169 AAACTATTAAAAATT
1 AAACTATTAAAAATT
56338184 AAA
1 AAA
56338187 AATTCATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (15 bp):
AAACTATTAAAAATT
Found at i:56349925 original size:21 final size:21
Alignment explanation
Indices: 56349901--56349940 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
56349891 TAACTCTAAC
56349901 ATTTATAAAA-TTTATAATTAA
1 ATTT-TAAAACTTTATAATTAA
*
56349922 ATTTTAAAACTTTTTAATT
1 ATTTTAAAACTTTATAATT
56349941 CTTAAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTTAAAACTTTATAATTAA
Found at i:56350175 original size:26 final size:24
Alignment explanation
Indices: 56350127--56350175 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
56350117 GCTGAATCGG
* *
56350127 TTTTATAAATTTCTTATTTTTAAC
1 TTTTATAAATTTATTATTGTTAAC
56350151 TTTTATAAACTTTAATTATTGTTAA
1 TTTTATAAA-TTT-ATTATTGTTAA
56350176 TCCCGCAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 3 0.14
26 9 0.43
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTATAAATTTATTATTGTTAAC
Found at i:56354226 original size:23 final size:24
Alignment explanation
Indices: 56354152--56354299 Score: 83
Period size: 24 Copynumber: 6.3 Consensus size: 24
56354142 AAAATCGTTT
* * *
56354152 AATTTATTATATATTATTATCTTA
1 AATTTATCATACATTATTATTTTA
* * *
56354176 GATTTATTATGCATTATTA-TTTA
1 AATTTATCATACATTATTATTTTA
56354199 TAATTTATCA-ACATTATTATTTTA
1 -AATTTATCATACATTATTATTTTA
* *
56354223 AATTCATCATTAACATTAATA-TTT-
1 AATTTATCA-T-ACATTATTATTTTA
* **
56354247 --TTAATCATGTATTATTATTTTA
1 AATTTATCATACATTATTATTTTA
** * *
56354269 AACGTATCACATATTATTATTTTA
1 AATTTATCATACATTATTATTTTA
*
56354293 AAATTAT
1 AATTTAT
56354300 TATCAAAATT
Statistics
Matches: 95, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
20 6 0.06
21 4 0.04
22 6 0.06
23 19 0.20
24 49 0.52
25 3 0.03
26 8 0.08
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (24 bp):
AATTTATCATACATTATTATTTTA
Found at i:56367049 original size:12 final size:12
Alignment explanation
Indices: 56367032--56367061 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
56367022 TGCATAGTGA
56367032 GGGAGTATGTGC
1 GGGAGTATGTGC
56367044 GGGAGTATGTGC
1 GGGAGTATGTGC
56367056 GGGAGT
1 GGGAGT
56367062 TTAGTGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.07, G:0.53, T:0.23
Consensus pattern (12 bp):
GGGAGTATGTGC
Found at i:56368453 original size:11 final size:11
Alignment explanation
Indices: 56368437--56368477 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
56368427 TACTACAACA
56368437 AAAAGAAAAAG
1 AAAAGAAAAAG
56368448 AAAAGAAAAAG
1 AAAAGAAAAAG
56368459 -AAAG-AAAAG
1 AAAAGAAAAAG
*
56368468 AAGAGAAAAA
1 AAAAGAAAAA
56368478 AATGAAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 5 0.19
10 7 0.26
11 15 0.56
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:56369964 original size:21 final size:21
Alignment explanation
Indices: 56369924--56370057 Score: 96
Period size: 21 Copynumber: 6.4 Consensus size: 21
56369914 CAGATACGTC
*
56369924 AACAGAAGCTCA-AA-AGCTG
1 AACAAAAGCTCATAAGAGCTG
56369943 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* * *
56369964 AATAGAAA-CTCATAAAAGTTG
1 AACA-AAAGCTCATAAGAGCTG
* *
56369985 AACAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* * *
56370006 AACAGAAACCCCGA-AAGAGCTA
1 AACA-AAAGCTC-ATAAGAGCTG
* * *
56370028 AACAGAAGCTCAAAAGAGCTA
1 AACAAAAGCTCATAAGAGCTG
56370049 AACAGAAAG
1 AACA-AAAG
56370058 TAAAACACGA
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
19 11 0.12
20 5 0.06
21 52 0.58
22 21 0.24
ACGTcount: A:0.49, C:0.19, G:0.20, T:0.12
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTG
Found at i:56369994 original size:42 final size:42
Alignment explanation
Indices: 56369935--56370056 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
56369925 ACAGAAGCTC
* * * *
56369935 AAAAGCTGAACAAAAGCTCATAAGAGCTGAATAGAAACTCAT
1 AAAAGCTGAACAGAAGCTCATAAGAGCTGAACAGAAACCCAG
* * *
56369977 AAAAGTTGAACAGAAGCTCGTAAGAGCTGAACAGAAACCCCG
1 AAAAGCTGAACAGAAGCTCATAAGAGCTGAACAGAAACCCAG
* * *
56370019 AAAGAGCTAAACAGAAGCTCAAAAGAGCTAAACAGAAA
1 AAA-AGCTGAACAGAAGCTCATAAGAGCTGAACAGAAA
56370057 GTAAAACACG
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 38 0.57
43 29 0.43
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.12
Consensus pattern (42 bp):
AAAAGCTGAACAGAAGCTCATAAGAGCTGAACAGAAACCCAG
Found at i:56373626 original size:21 final size:20
Alignment explanation
Indices: 56373574--56373628 Score: 87
Period size: 19 Copynumber: 2.8 Consensus size: 20
56373564 TGCATTGCTT
56373574 TCTTGTTG-TTTTTCAACTC
1 TCTTGTTGCTTTTTCAACTC
56373593 TCTTGTTGC-TTTTCAACTC
1 TCTTGTTGCTTTTTCAACTC
56373612 TCTTGTTGCTATTTTCA
1 TCTTGTTGCT-TTTTCA
56373629 TTTCTAGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 27 0.82
21 6 0.18
ACGTcount: A:0.11, C:0.22, G:0.11, T:0.56
Consensus pattern (20 bp):
TCTTGTTGCTTTTTCAACTC
Found at i:56374835 original size:21 final size:22
Alignment explanation
Indices: 56374806--56374866 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
56374796 ATTGGAAACC
56374806 TAAT-TTTAAATATATTATTTA
1 TAATATTTAAATATATTATTTA
*
56374827 -AATATTTAAATATGTT-TTTA
1 TAATATTTAAATATATTATTTA
* *
56374847 TCATATTATAAACATATTAT
1 TAATATT-TAAATATATTAT
56374867 AATCAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 7 0.22
21 16 0.50
22 8 0.25
23 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (22 bp):
TAATATTTAAATATATTATTTA
Found at i:56374980 original size:6 final size:6
Alignment explanation
Indices: 56374969--56374999 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
56374959 TTTAACCAGT
*
56374969 TTTTAA TTTTAA TTTTAA TTTTAA TCTTAA T
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T
56375000 AGTTATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:56375311 original size:13 final size:13
Alignment explanation
Indices: 56375293--56375334 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
56375283 TTTTAAATAA
*
56375293 TTACTATTTATTT
1 TTACTAATTATTT
56375306 TTACTAATTATTAT
1 TTACTAATTATT-T
*
56375320 TT-TTAATTATTT
1 TTACTAATTATTT
56375332 TTA
1 TTA
56375335 AACAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 3 0.12
13 19 0.76
14 3 0.12
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (13 bp):
TTACTAATTATTT
Found at i:56376698 original size:36 final size:36
Alignment explanation
Indices: 56376651--56376720 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
56376641 AAATGGATGA
56376651 AATTTTTAACATAAGAGTCGGTTTGATCTTTGAAGG
1 AATTTTTAACATAAGAGTCGGTTTGATCTTTGAAGG
*
56376687 AATTTTTAACATAAGGGTCGGTTTGATCTTTGAA
1 AATTTTTAACATAAGAGTCGGTTTGATCTTTGAA
56376721 CTAACGTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (36 bp):
AATTTTTAACATAAGAGTCGGTTTGATCTTTGAAGG
Found at i:56380448 original size:20 final size:20
Alignment explanation
Indices: 56380405--56380448 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
56380395 GATAATTCAT
* *
56380405 ATTTGTATTTCATTTTTTAT
1 ATTTGTATTTCATTTATTAA
56380425 ATTTG-ATTTCAGTTTATTAA
1 ATTTGTATTTCA-TTTATTAA
56380445 ATTT
1 ATTT
56380449 TGTTTTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (20 bp):
ATTTGTATTTCATTTATTAA
Found at i:56394149 original size:47 final size:47
Alignment explanation
Indices: 56394098--56394223 Score: 119
Period size: 47 Copynumber: 2.7 Consensus size: 47
56394088 AAAATTGTAG
* * * *
56394098 CCCTTGAA-CAATTATTGTGAAAGTCAATTTGTTTGGCTTAATAGTAT
1 CCCTTGAAGCAATT-TTATGAAAGCCAATTTGTTTGACGTAATAGTAT
* * * *
56394145 CCCTTAAAGGAGTTTTATGGAAGCCAATTTGTTTGACGTAATAGTAT
1 CCCTTGAAGCAATTTTATGAAAGCCAATTTGTTTGACGTAATAGTAT
* * * * *
56394192 CCCTTGAGGGAATTTTGTGAAATCCAAGTTGT
1 CCCTTGAAGCAATTTTATGAAAGCCAATTTGT
56394224 ATAATGTGAT
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
47 60 0.95
48 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (47 bp):
CCCTTGAAGCAATTTTATGAAAGCCAATTTGTTTGACGTAATAGTAT
Found at i:56401559 original size:15 final size:16
Alignment explanation
Indices: 56401533--56401563 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
56401523 AAATGTAAGT
56401533 TTTAATAATATATAAA
1 TTTAATAATATATAAA
56401549 TTTAA-AATATATAAA
1 TTTAATAATATATAAA
56401564 AATATTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTAATAATATATAAA
Found at i:56407427 original size:18 final size:17
Alignment explanation
Indices: 56407399--56407446 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
56407389 TTATGTCAAC
56407399 AAATAATTTAAAATTATA
1 AAAT-ATTTAAAATTATA
*
56407417 ATAATATTTAAAATTTTA
1 A-AATATTTAAAATTATA
*
56407435 AAATATATAAAA
1 AAATATTTAAAA
56407447 AAATCATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 10 0.37
18 14 0.52
19 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATTTAAAATTATA
Found at i:56407445 original size:17 final size:18
Alignment explanation
Indices: 56407407--56407446 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
56407397 ACAAATAATT
*
56407407 TAAAATTATAATAATATT
1 TAAAATTATAATAATATA
*
56407425 TAAAATTTTAA-AATATA
1 TAAAATTATAATAATATA
56407442 TAAAA
1 TAAAA
56407447 AAATCATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAATTATAATAATATA
Found at i:56439672 original size:30 final size:31
Alignment explanation
Indices: 56439637--56439696 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 31
56439627 ACCAAAATAA
56439637 TATTTTAAAAATAAAAAATAAAAA-AAAAAG
1 TATTTTAAAAATAAAAAATAAAAATAAAAAG
*
56439667 TATTTTAAAATTAAAAAATAAAAATAAAAA
1 TATTTTAAAAATAAAAAATAAAAATAAAAA
56439697 AAATATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.27
Consensus pattern (31 bp):
TATTTTAAAAATAAAAAATAAAAATAAAAAG
Found at i:56440968 original size:16 final size:17
Alignment explanation
Indices: 56440938--56440970 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
56440928 GACTATACAT
*
56440938 AAAATTTTAATAAATAA
1 AAAATATTAATAAATAA
56440955 AAAATATTAA-AAATAA
1 AAAATATTAATAAATAA
56440971 TATAAGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATATTAATAAATAA
Found at i:56443571 original size:50 final size:50
Alignment explanation
Indices: 56443460--56443688 Score: 221
Period size: 50 Copynumber: 4.5 Consensus size: 50
56443450 AATGAGATCT
* * * * *
56443460 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAAATGTCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCA-C--CGATA-TAAG-AA-CTCC
* *
56443516 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATAAGAACTCT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATAAGAACTCC
* * * *
56443566 TATGTAAGACCATATCTGGGACATGACATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATAAGAACTCC
* * *
56443616 CATGTAAGACCATATCTGGGATATGGCATTGGCA--G-TACAGAAAACATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATA-AGAAC-TCC
* *
56443665 CATGTAAGACTATGTCTGGGACAT
1 CATGTAAGACCATATCTGGGACAT
56443689 AACTTTGGCA
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
47 2 0.01
48 5 0.03
49 24 0.16
50 76 0.51
51 2 0.01
52 3 0.02
53 3 0.02
55 1 0.01
56 34 0.23
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (50 bp):
CATGTAAGACCATATCTGGGACATGGCATTGGCACCGATATAAGAACTCC
Found at i:56443915 original size:12 final size:12
Alignment explanation
Indices: 56443898--56443929 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
56443888 ATGAGTTATT
*
56443898 TAAGTAAGCAAG
1 TAAGTAAACAAG
56443910 TAAGTAAACAAG
1 TAAGTAAACAAG
56443922 TAAGTAAA
1 TAAGTAAA
56443930 GAAGCGAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:56447564 original size:31 final size:31
Alignment explanation
Indices: 56447529--56447587 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
56447519 ATCATAAAAT
* *
56447529 TATTTGAAAGTTTTCATTTAAATCACTAAAC
1 TATTTGAAAATTTTCATTCAAATCACTAAAC
* *
56447560 TATTTGAAAATTTTTATTCAAGTCACTA
1 TATTTGAAAATTTTCATTCAAATCACTA
56447588 GTTACTTGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (31 bp):
TATTTGAAAATTTTCATTCAAATCACTAAAC
Found at i:56448264 original size:17 final size:18
Alignment explanation
Indices: 56448233--56448269 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
56448223 TGATTGGCCC
*
56448233 AATTATAAAATTATTAAA
1 AATTATAAAAATATTAAA
56448251 AATTA-AAAAATATTAAA
1 AATTATAAAAATATTAAA
56448268 AA
1 AA
56448270 AGTTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTATAAAAATATTAAA
Found at i:56452707 original size:13 final size:13
Alignment explanation
Indices: 56452689--56452713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56452679 TTCGAGAGTT
56452689 ATTAATATTTATA
1 ATTAATATTTATA
56452702 ATTAATATTTAT
1 ATTAATATTTAT
56452714 TTACATGTCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTAATATTTATA
Found at i:56470839 original size:26 final size:27
Alignment explanation
Indices: 56470810--56470868 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
56470800 CCTAAAAATC
56470810 AACTTTTTG-AAACCTTAAAGGAAGTT
1 AACTTTTTGTAAACCTTAAAGGAAGTT
* **
56470836 AAC-TTTTGTCATTCTTAAAGGAAGTT
1 AACTTTTTGTAAACCTTAAAGGAAGTT
*
56470862 GACTTTT
1 AACTTTT
56470869 GTTCATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (27 bp):
AACTTTTTGTAAACCTTAAAGGAAGTT
Found at i:56476434 original size:26 final size:26
Alignment explanation
Indices: 56476397--56476468 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
56476387 TATTTGGACT
56476397 TTTATTTTAAAATTTTTAAATAATTA
1 TTTATTTTAAAATTTTTAAATAATTA
* *
56476423 TTT-TTTTGAAAA-TTTT-ATTAATTT
1 TTTATTTT-AAAATTTTTAAATAATTA
*
56476447 TTTATTTTTAGAATTTTTAAAT
1 TTTA-TTTTAAAATTTTTAAAT
56476469 TTGATATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
24 9 0.24
25 11 0.30
26 15 0.41
27 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (26 bp):
TTTATTTTAAAATTTTTAAATAATTA
Found at i:56477439 original size:7 final size:7
Alignment explanation
Indices: 56477427--56477451 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
56477417 AATTCAGTAC
56477427 TTTTATA
1 TTTTATA
56477434 TTTTATA
1 TTTTATA
56477441 TTTTATA
1 TTTTATA
56477448 TTTT
1 TTTT
56477452 TTAATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:56479080 original size:24 final size:25
Alignment explanation
Indices: 56479048--56479094 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
56479038 CTTTCGAGTT
*
56479048 AAATTAAAT-AAATATTTTGAATTC
1 AAATTAAATCAAATAATTTGAATTC
*
56479072 AAATTAAATCATATAATTTGAAT
1 AAATTAAATCAAATAATTTGAAT
56479095 AATTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (25 bp):
AAATTAAATCAAATAATTTGAATTC
Found at i:56498908 original size:61 final size:59
Alignment explanation
Indices: 56498838--56499015 Score: 150
Period size: 61 Copynumber: 2.9 Consensus size: 59
56498828 TTGTTAAATT
*
56498838 ATATTTAATAATAATTATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGA
1 ATATTTAATAATAA-TATTTTATA-TATTATATATTATGATTTTAATAAATTCATATAAGA
* * * * * *
56498899 ATATTTAATACTAAGAATTTTATTAAATTATATATT-T--TTGTTAAATTATATTTA-ATAATA
1 ATATTTAATAATAA-TATTTTA-TATATTATATATTATGATT-TT-AA-TAAATTCATATAAGA
* * *
56498959 ATTATTTTA-AATTATATTTTATAATATTATATATTATAATTTTAATAAATTCATATA
1 A-TATTTAATAATAATATTTTAT-ATATTATATATTATGATTTTAATAAATTCATATA
56499016 TTTTATCAAA
Statistics
Matches: 92, Mismatches: 15, Indels: 21
0.72 0.12 0.16
Matches are distributed among these distances:
58 3 0.03
59 25 0.27
60 17 0.18
61 43 0.47
62 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (59 bp):
ATATTTAATAATAATATTTTATATATTATATATTATGATTTTAATAAATTCATATAAGA
Found at i:56498968 original size:26 final size:25
Alignment explanation
Indices: 56498930--56498988 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
56498920 ATTAAATTAT
*
56498930 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
56498956 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
56498982 ATATTAT
1 ATATTAT
56498989 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:56498987 original size:15 final size:15
Alignment explanation
Indices: 56498943--56498998 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
56498933 TTTTTGTTAA
*
56498943 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
56498958 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
56498969 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
56498984 ATTATATATTATAAT
1 ATTATATTTTATAAT
56498999 TTTAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:56499014 original size:24 final size:22
Alignment explanation
Indices: 56498969--56499037 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
56498959 ATTATTTTAA
56498969 ATTATATTTTATAATATTATAT
1 ATTATATTTTATAATATTATAT
* *
56498991 ATTATAATTT-TAATA-AAT-T
1 ATTATATTTTATAATATTATAT
56499010 CA-TATATTTTATCAA-ATTATAT
1 -ATTATATTTTAT-AATATTATAT
56499032 ATTATA
1 ATTATA
56499038 AAAAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 10 0.27
22 14 0.38
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTATATTTTATAATATTATAT
Found at i:56499033 original size:17 final size:17
Alignment explanation
Indices: 56498915--56499054 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
56498905 AATACTAAGA
*
56498915 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
**
56498932 ATTTTTGTTAAA-T-TAT
1 A-TTTTAATAAATTATAT
*
56498948 A-TTTAAT-AATAAT-T
1 ATTTTAATAAATTATAT
* *
56498962 ATTTTAAATTATATTTTAT
1 ATTTT-AA-TAAATTATAT
* *
56498981 AATATT-ATATATTATA-
1 -ATTTTAATAAATTATAT
56498997 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
56499015 ATTTT-ATCAAATTATAT
1 ATTTTAAT-AAATTATAT
*
56499032 ATTATAA-AAA--ATAT
1 ATTTTAATAAATTATAT
56499046 A-TTTAATAA
1 ATTTTAATAA
56499055 TAATTATGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 33
0.67 0.09 0.23
Matches are distributed among these distances:
13 6 0.06
14 13 0.14
15 8 0.08
16 15 0.16
17 24 0.25
18 24 0.25
19 1 0.01
20 4 0.04
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:56499303 original size:16 final size:16
Alignment explanation
Indices: 56499282--56499349 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
56499272 GATTTGCTAT
56499282 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
56499298 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
56499314 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
56499330 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
56499346 TACA
1 TACA
56499350 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:56504320 original size:73 final size:73
Alignment explanation
Indices: 56504235--56504382 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
56504225 CATGATGAAA
*
56504235 TACTTCTTTTTGTTAGAATTGTGTTCCTAAGAAAATTTGGTGTCAACATTTTTATTGAAATAGTT
1 TACTTCTTTTTGTTAGAATTGTGTTCCTAAGAAAATTTGCTGTCAACATTTTTATTGAAATAGTT
56504300 AACAATAT
66 AACAATAT
56504308 TACTTCTTTTTGTTAGAATTGTGTTCCTAAGAAAATTTGCTGTCAACATTTTTATTGAAATAGTT
1 TACTTCTTTTTGTTAGAATTGTGTTCCTAAGAAAATTTGCTGTCAACATTTTTATTGAAATAGTT
56504373 AACAATAT
66 AACAATAT
56504381 TA
1 TA
56504383 ACTATTTAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (73 bp):
TACTTCTTTTTGTTAGAATTGTGTTCCTAAGAAAATTTGCTGTCAACATTTTTATTGAAATAGTT
AACAATAT
Found at i:56504780 original size:3 final size:3
Alignment explanation
Indices: 56504772--56504836 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
56504762 CGTAATGCAA
56504772 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
56504820 AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AA
56504837 TGGAGACTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:56508221 original size:15 final size:14
Alignment explanation
Indices: 56508196--56508228 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
56508186 ATTCAGCAGT
56508196 AAGAAAAG-A-AAA
1 AAGAAAAGAAGAAA
56508208 AAGAAAAGAAGAAA
1 AAGAAAAGAAGAAA
56508222 AAGAAAA
1 AAGAAAA
56508229 TACATCCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 1 0.05
14 10 0.53
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAGAAAAGAAGAAA
Found at i:56508897 original size:28 final size:29
Alignment explanation
Indices: 56508839--56508897 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
56508829 AATCCAATCC
*
56508839 TTTTATCTTTTTTTAAATTTAATCTCTCA
1 TTTTATCTTTTTTTAAATTTAATCTCACA
* *
56508868 TTTTAT-TTTTGTTTCATTTTAATC-CACA
1 TTTTATCTTTT-TTTAAATTTAATCTCACA
56508896 TT
1 TT
56508898 AAAGCGCTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.22, C:0.14, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTTATCTTTTTTTAAATTTAATCTCACA
Found at i:56509108 original size:18 final size:18
Alignment explanation
Indices: 56509085--56509121 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
56509075 TCATCATTAT
56509085 TATTAGTATTAT-TATTTA
1 TATTAGT-TTATATATTTA
56509103 TATTAGTTTATATATTTA
1 TATTAGTTTATATATTTA
56509121 T
1 T
56509122 CTACATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTAGTTTATATATTTA
Found at i:56512697 original size:45 final size:45
Alignment explanation
Indices: 56512630--56512805 Score: 248
Period size: 45 Copynumber: 4.0 Consensus size: 45
56512620 GTGTATTGAG
* **
56512630 TATCATTGGTTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAA
* *
56512675 TACCATTGATTATAAAGGTGGTTGCTATGTGCTGACTCCACCGAA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAA
* **
56512720 AATCATTGAAAATAAAGGTGGTTGCTATGTGCTGATTCCACCGAA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAA
* *
56512765 TATAATTGATTATAAGGGTGG-TGCTATGTGCTGA-TCCACCG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCG
56512806 TGTAACAGTT
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 7 0.06
44 13 0.11
45 96 0.83
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (45 bp):
TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAA
Found at i:56528179 original size:15 final size:17
Alignment explanation
Indices: 56528153--56528184 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
56528143 TAACTGTAAA
56528153 TTTCTCTTCTTT-TTTT
1 TTTCTCTTCTTTCTTTT
56528169 TTTCT-TTCTTTCTTTT
1 TTTCTCTTCTTTCTTTT
56528185 AGGTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTCTCTTCTTTCTTTT
Found at i:56530262 original size:18 final size:18
Alignment explanation
Indices: 56530223--56530263 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
56530213 GCCTGATGGT
* *
56530223 TCTTCTCCATCATCTTCC
1 TCTTCTCCATCATCATCA
56530241 TCTTCTCCATCATCATCA
1 TCTTCTCCATCATCATCA
56530259 TCTTC
1 TCTTC
56530264 CAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (18 bp):
TCTTCTCCATCATCATCA
Found at i:56543663 original size:18 final size:18
Alignment explanation
Indices: 56543628--56543669 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
56543618 GTTATAATAC
*
56543628 TTTATTTTATATTTTATT
1 TTTATTTTATATTCTATT
56543646 TTTATTTT-TATTACTATT
1 TTTATTTTATATT-CTATT
*
56543664 TCTATT
1 TTTATT
56543670 ACTATTCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTATATTCTATT
Found at i:56545719 original size:21 final size:21
Alignment explanation
Indices: 56545693--56545734 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
56545683 CTAAGTACAT
* *
56545693 GGGCGTGTGGAGTAGCCACAC
1 GGGCGTGTGGAATAGACACAC
56545714 GGGCGTGTGGAATAGACACAC
1 GGGCGTGTGGAATAGACACAC
56545735 AATCTGGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.40, T:0.14
Consensus pattern (21 bp):
GGGCGTGTGGAATAGACACAC
Found at i:56546901 original size:18 final size:18
Alignment explanation
Indices: 56546878--56546912 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
56546868 AGCCTAGTAC
56546878 CCAAAC-TAAAGCCCAAAA
1 CCAAACTTAAA-CCCAAAA
56546896 CCAAACTTAAACCCAAA
1 CCAAACTTAAACCCAAA
56546913 CCTACCCCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.54, C:0.34, G:0.03, T:0.09
Consensus pattern (18 bp):
CCAAACTTAAACCCAAAA
Found at i:56550028 original size:23 final size:24
Alignment explanation
Indices: 56549975--56550033 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
56549965 ATGTTTTGTA
* *
56549975 TTTTATTTAATATTAGTATACTTAT
1 TTTTATTTAATATTAATATAC-AAT
56550000 TTTTATTTAATATTAATATA-AAT
1 TTTTATTTAATATTAATATACAAT
56550023 TTTTATTTAAT
1 TTTTATTTAAT
56550034 TAGATTTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 13 0.41
25 19 0.59
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTTATTTAATATTAATATACAAT
Found at i:56550644 original size:29 final size:29
Alignment explanation
Indices: 56550594--56550653 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
56550584 TAATGTTCTT
* ** * *
56550594 ATCTCCCCAAGTATCTTGCTTCTTCTGAA
1 ATCTCCCCAAATAAATTCCTTCCTCTGAA
56550623 ATCTCCCCAAATAAATTCCTTCCTCTGAA
1 ATCTCCCCAAATAAATTCCTTCCTCTGAA
56550652 AT
1 AT
56550654 TTCCATGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.35
Consensus pattern (29 bp):
ATCTCCCCAAATAAATTCCTTCCTCTGAA
Found at i:56554830 original size:25 final size:24
Alignment explanation
Indices: 56554776--56554828 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
56554766 GAACTCGTTA
*
56554776 TTTTTGCACATGTTATTTTTTAAT
1 TTTTTACACATGTTATTTTTTAAT
56554800 TTTTTACACATGTTATTTTTTAAT
1 TTTTTACACATGTTATTTTTTAAT
56554824 TTTTT
1 TTTTT
56554829 TATTTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.21, C:0.08, G:0.06, T:0.66
Consensus pattern (24 bp):
TTTTTACACATGTTATTTTTTAAT
Found at i:56556969 original size:14 final size:14
Alignment explanation
Indices: 56556952--56556979 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56556942 GTTTAAAATT
56556952 TTTAATTAATTAAA
1 TTTAATTAATTAAA
56556966 TTTAATTAATTAAA
1 TTTAATTAATTAAA
56556980 AATCTATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTAATTAATTAAA
Found at i:56559044 original size:19 final size:17
Alignment explanation
Indices: 56559010--56559052 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
56559000 TCTCTTTTTT
* *
56559010 TTTATTTTTTTTAATTCA
1 TTTATTTTATTCAATT-A
56559028 TTCTATTTTATTCAATTA
1 TT-TATTTTATTCAATTA
56559046 TTTATTT
1 TTTATTT
56559053 ATTGTCTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 5 0.23
19 12 0.55
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTTTATTCAATTA
Found at i:56563818 original size:68 final size:68
Alignment explanation
Indices: 56563678--56563821 Score: 166
Period size: 68 Copynumber: 2.1 Consensus size: 68
56563668 TTAATCACTT
*
56563678 TAATATTAAATTAATATAATACTTATGAAGATAAATATTAAATTTAACTTAATATAAGATAATCA
1 TAATATTAAATTAATAAAATACTTATGAAGATAAATATTAAATTTAACTTAATATAAGATAATCA
***
56563743 CTT
66 AAA
* * * * *
56563746 TAATATTAAATTAATAAAATA-TTATTAAGATAAGTATTGAATTTAATTTAATATTAA-ATTTAT
1 TAATATTAAATTAATAAAATACTTATGAAGATAAATATTAAATTTAACTTAATA-TAAGA-TAAT
*
56563809 TAAAA
64 CAAAA
56563814 TAATATTA
1 TAATATTA
56563822 TTTTTTAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
67 29 0.45
68 35 0.55
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (68 bp):
TAATATTAAATTAATAAAATACTTATGAAGATAAATATTAAATTTAACTTAATATAAGATAATCA
AAA
Found at i:56569559 original size:17 final size:18
Alignment explanation
Indices: 56569530--56569563 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
56569520 ATTTTTAATA
56569530 TTTTAATACATTTATTTC
1 TTTTAATACATTTATTTC
56569548 TTTTAATA-ATTTATTT
1 TTTTAATACATTTATTT
56569564 AATCATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTAATACATTTATTTC
Found at i:56572312 original size:24 final size:24
Alignment explanation
Indices: 56572260--56572314 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
56572250 AAACTCATGC
* * *
56572260 GAGCCAATAACGGGTAGCTCCGAA
1 GAGCCATTAACGGGAAGCTCCAAA
*
56572284 GAGCCATTAACGGGAAGCTCTAAA
1 GAGCCATTAACGGGAAGCTCCAAA
*
56572308 TAGCCAT
1 GAGCCAT
56572315 ATATCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.16
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCCAAA
Found at i:56572888 original size:10 final size:11
Alignment explanation
Indices: 56572865--56572893 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
56572855 GAATTTAACA
56572865 TCAATTCATAT
1 TCAATTCATAT
56572876 TCAATTC-TAT
1 TCAATTCATAT
56572886 TCAATTCA
1 TCAATTCA
56572894 CATCCTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (11 bp):
TCAATTCATAT
Found at i:56577580 original size:51 final size:52
Alignment explanation
Indices: 56577464--56577584 Score: 192
Period size: 52 Copynumber: 2.3 Consensus size: 52
56577454 ACTAGTGACT
56577464 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
56577516 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
*
56577567 CAAGGGTGGTACTATGTG
1 CAAGTGTGGTACTATGTG
56577585 CAGGTCACCG
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 30 0.46
52 34 0.52
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:56577946 original size:14 final size:14
Alignment explanation
Indices: 56577927--56577954 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56577917 TAGAAGAAAT
56577927 GGTGTAAGCAAGAG
1 GGTGTAAGCAAGAG
56577941 GGTGTAAGCAAGAG
1 GGTGTAAGCAAGAG
56577955 AATTTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.43, T:0.14
Consensus pattern (14 bp):
GGTGTAAGCAAGAG
Found at i:56588939 original size:19 final size:19
Alignment explanation
Indices: 56588910--56588958 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
56588900 TCATTTCTCT
56588910 TTTTCTATTCATTCTGTTCA
1 TTTT-TATTCATTCTGTTCA
56588930 TTTTTATTCATTCTGTTCA
1 TTTTTATTCATTCTGTTCA
*
56588949 TTTCTATTCA
1 TTTTTATTCA
56588959 AACACGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.16, C:0.18, G:0.04, T:0.61
Consensus pattern (19 bp):
TTTTTATTCATTCTGTTCA
Found at i:56602580 original size:31 final size:31
Alignment explanation
Indices: 56602545--56602604 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
56602535 ATTGTCACTA
*
56602545 AACTA-TTCAAAAGTTTTCATTTAAGTCATTG
1 AACTATTTCAAAA-TTTTCACTTAAGTCATTG
*
56602576 AACTATTTGAAAATTTTCACTTAAGTCAT
1 AACTATTTCAAAATTTTCACTTAAGTCAT
56602605 CAAGCTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (31 bp):
AACTATTTCAAAATTTTCACTTAAGTCATTG
Found at i:56602613 original size:31 final size:32
Alignment explanation
Indices: 56602545--56602613 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
56602535 ATTGTCACTA
* * *
56602545 AACTA-TTCAAAAGTTTTCATTTAAGTCATTG
1 AACTATTTGAAAAGTTTTCACTTAAGTCATTC
56602576 AACTATTTGAAAA-TTTTCACTTAAGTCA-TC
1 AACTATTTGAAAAGTTTTCACTTAAGTCATTC
56602606 AAGCTATT
1 AA-CTATT
56602614 AAGTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 3 0.09
31 24 0.73
32 6 0.18
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (32 bp):
AACTATTTGAAAAGTTTTCACTTAAGTCATTC
Found at i:56607705 original size:193 final size:196
Alignment explanation
Indices: 56607222--56607811 Score: 793
Period size: 200 Copynumber: 3.0 Consensus size: 196
56607212 GATAAAGTTT
*
56607222 GTTATCTTTTCTTTTTAGCTACATTTTTTTCTTAAATTAGTTACTAAATATTTCTATAGATTTGA
1 GTTATCTTTTCTTTTTAGCTACA--TTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGA
*
56607287 AAATTAGAGAAATTACTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTT
64 AAATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTT
* * ***** * *
56607352 TCTGTTAAATGTTAATCTCTTTTTTATATTCTTTATTAATTTATTTTTGCAGGGAGAAGTGAACA
129 TTTGTT-AATCTT--T-T-TAAAAAATATTCTTTATTAATTTAATTTTGCAGGGAGAAGAGAACA
*
56607417 GGTTTTCA
189 AGTTTTCA
* * *
56607425 GTTAT-GTTTCTTTTTAGCTAAATTTTCCTTAAATTAGTTACTAAATCTTTCTATAGATTTGAAA
1 GTTATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAA
* * * *
56607489 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATTATCATAATTACGAATTGTTTT
66 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTT
* *
56607554 TGTTAATCTTTTTAAAAAATATTCTTTGTTAATTTAATTTTGCCGGGAGAAGAGAACAAGTTTTC
131 TGTTAATCTTTTTAAAAAATATTCTTTATTAATTTAATTTTGCAGGGAGAAGAGAACAAGTTTTC
56607619 A
196 A
56607620 GTTATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAAT-TTT-T-TAGATTTGAAA
1 GTTATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAA
*
56607682 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATAATAATCATGAAGTGTTTT
66 ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTT
** * * * *
56607747 TGTTAATCTTTTT----TTTCTT-TTTATTTATTTATTTTTTGCAGGGAGAAGAGAACAGGTTTT
131 TGTTAATCTTTTTAAAAAATATTCTTTATTAATTTA-ATTTTGCAGGGAGAAGAGAACAAGTTTT
56607807 CA
195 CA
56607809 GTT
1 GTT
56607812 TATGTTCATT
Statistics
Matches: 349, Mismatches: 36, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
188 10 0.03
189 33 0.09
193 84 0.24
194 1 0.00
195 52 0.15
196 40 0.11
197 1 0.00
199 5 0.01
200 103 0.30
202 15 0.04
203 5 0.01
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.48
Consensus pattern (196 bp):
GTTATCTTTTCTTTTTAGCTACATTTTCCTTAAATTAGTTACTAAATATTTCTATAGATTTGAAA
ATTAGAGAAATTATTATGCCTCTTTCTGAATTATGATCTTGATCATCATAATCATGAAGTGTTTT
TGTTAATCTTTTTAAAAAATATTCTTTATTAATTTAATTTTGCAGGGAGAAGAGAACAAGTTTTC
A
Found at i:56612981 original size:14 final size:14
Alignment explanation
Indices: 56612962--56612989 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56612952 GGATATCTTC
56612962 CTCATATATCTTTT
1 CTCATATATCTTTT
56612976 CTCATATATCTTTT
1 CTCATATATCTTTT
56612990 GAGAATTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.57
Consensus pattern (14 bp):
CTCATATATCTTTT
Found at i:56616696 original size:19 final size:19
Alignment explanation
Indices: 56616672--56616711 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
56616662 ATAAATAAAA
56616672 TATATTAAAAAAATT-ATAT
1 TATATT-AAAAAATTAATAT
56616691 TATATTAAAAAATTAATAT
1 TATATTAAAAAATTAATAT
56616710 TA
1 TA
56616712 ATATATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATATTAAAAAATTAATAT
Found at i:56628392 original size:7 final size:7
Alignment explanation
Indices: 56628377--56628414 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
56628367 TTGAAAATCG
56628377 AAAATATT
1 AAAA-ATT
56628385 AAAAATT
1 AAAAATT
56628392 AAAAATT
1 AAAAATT
56628399 AAAAATT
1 AAAAATT
56628406 AAAAATT
1 AAAAATT
56628413 AA
1 AA
56628415 GAAAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 26 0.87
8 4 0.13
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:56628429 original size:21 final size:20
Alignment explanation
Indices: 56628379--56628429 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
56628369 GAAAATCGAA
* *
56628379 AATATTAAAAATTAAAAATT
1 AATAATAAAAATTAAAAAAT
*
56628399 AAAAATTAAAAATTAAGAAAAT
1 AATAA-TAAAAATTAA-AAAAT
56628421 AATAATAAA
1 AATAATAAA
56628430 GAATAAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 14 0.56
22 8 0.32
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
AATAATAAAAATTAAAAAAT
Found at i:56629175 original size:20 final size:20
Alignment explanation
Indices: 56629142--56629185 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
56629132 GTCCTAACCG
56629142 AATTAATTAGGTCTTAG-TTT
1 AATTAATTAGGTCTT-GTTTT
56629162 AATTAATT-GTGTCTTGTTTT
1 AATTAATTAG-GTCTTGTTTT
56629182 AATT
1 AATT
56629186 GTTTGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.55
Consensus pattern (20 bp):
AATTAATTAGGTCTTGTTTT
Found at i:56631718 original size:41 final size:41
Alignment explanation
Indices: 56631701--56631851 Score: 263
Period size: 41 Copynumber: 3.8 Consensus size: 41
56631691 ACTTATAGCA
*
56631701 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTGTAACC
1 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
*
56631742 TGATTCAGATCACCGGCA--T-GCTTGCTAGGTTTATAACC
1 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
56631780 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
1 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
56631821 TGATTCAGATCACCGGCACGTAGCCTGCTAG
1 TGATTCAGATCACCGGCACGTAGCCTGCTAG
56631852 ACTTAAAGTC
Statistics
Matches: 104, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
38 35 0.34
39 1 0.01
40 1 0.01
41 67 0.64
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (41 bp):
TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
Found at i:56636754 original size:24 final size:24
Alignment explanation
Indices: 56636722--56636770 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
56636712 TTCATCAGGT
56636722 AGCAGTTAGTTACTACTTTTGCTA
1 AGCAGTTAGTTACTACTTTTGCTA
*
56636746 AGCAGTTAGTTGCTACTTTTGCTA
1 AGCAGTTAGTTACTACTTTTGCTA
56636770 A
1 A
56636771 CTGTTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (24 bp):
AGCAGTTAGTTACTACTTTTGCTA
Found at i:56650707 original size:312 final size:312
Alignment explanation
Indices: 56650142--56650770 Score: 988
Period size: 312 Copynumber: 2.0 Consensus size: 312
56650132 AAGTTGCTTC
* * *
56650142 TCTGAGGAAGACTGACCAGAAGCAATTTCTTTTTTTGTAACTAACTGAAGCTCATTTAGCTCTTC
1 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
* * * * *
56650207 TGTTACTCCAGCTGATGAGTCTTCATGGTTCCCATCGTGAAGCTTTTCGGTTTCTTTCCTTTTTT
66 TGTTACTCCAGCTGACGAGTCTTCACGGTTCCCATCGTCAAGCTTTTCGGCTTCTTTCCTTTTCT
* *
56650272 CTTTGTTTGCTTCAATCTCTTGTGATTCCTCTGTTAATGAAGCCTGAGCAATAATGGTTTCTTGA
131 CTTCGTTTGCTTCAATCTCTTGTGATTCCTCTGTTAATGAAGCCTGAACAATAATGGTTTCTTGA
* * *
56650337 TCTATAACAGCTTTAGGCTCCTGAGGTCCTTCCTTTTCGAGAAGTTCCACTTCCTTCACCTTTTC
196 TCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCAAGAAGTTCCACTTCCTTCACCTTTTC
** **
56650402 CCCCTCTTCTTCATTGGCCTCAGCTCCATGCTTTAGGTTCTCTTCAGTCAAT
261 CCCCTCTTCTTCATTGGCCTCAGCTCCACACTTTAGGTTCTCGACAGTCAAT
* *
56650454 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAATTGAAGCTCATTTAGCTTTTC
1 TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
* *
56650519 TGTTTCTCCAGCTGACGAGTCTTCACGGTTCCCATCGTCAAGCTTTTTGGCTTCTTTCCTTTTCT
66 TGTTACTCCAGCTGACGAGTCTTCACGGTTCCCATCGTCAAGCTTTTCGGCTTCTTTCCTTTTCT
* * *
56650584 CTTCGTTTGCTTCAATCTCTTGTGATTCTTCTGTTATTGAAGCCTGAACTATAATGGTTTCTTGA
131 CTTCGTTTGCTTCAATCTCTTGTGATTCCTCTGTTAATGAAGCCTGAACAATAATGGTTTCTTGA
* * *
56650649 TCCATAACAGCTTCAGGTTCCTGAGGTCTTTCCTTTTCAAGAATTTCCACTTCCTTCACCTTTTC
196 TCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCAAGAAGTTCCACTTCCTTCACCTTTTC
** *
56650714 TTCCTCTTTTTCATTGGCCTCAGCTCCACACTTTAGGTTCTCGACAGTCAAT
261 CCCCTCTTCTTCATTGGCCTCAGCTCCACACTTTAGGTTCTCGACAGTCAAT
56650766 TCTGA
1 TCTGA
56650771 AGGCAAAGAT
Statistics
Matches: 287, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
312 287 1.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (312 bp):
TCTGAGGAAGACTGACCAGAAGCAATTTCTTCTCTAGTAACTAACTGAAGCTCATTTAGCTCTTC
TGTTACTCCAGCTGACGAGTCTTCACGGTTCCCATCGTCAAGCTTTTCGGCTTCTTTCCTTTTCT
CTTCGTTTGCTTCAATCTCTTGTGATTCCTCTGTTAATGAAGCCTGAACAATAATGGTTTCTTGA
TCCATAACAGCTTCAGGCTCCTGAGGTCCTTCCTTTTCAAGAAGTTCCACTTCCTTCACCTTTTC
CCCCTCTTCTTCATTGGCCTCAGCTCCACACTTTAGGTTCTCGACAGTCAAT
Found at i:56661240 original size:6 final size:6
Alignment explanation
Indices: 56661231--56661275 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
56661221 TCTTTTCTCT
* *
56661231 TTCAGC TTCAGC ATCAGC TTCAGC TTCAGC ATCAGC TTCAGC TTC
1 TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTCAGC TTC
56661276 CTTTATGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.20, C:0.33, G:0.16, T:0.31
Consensus pattern (6 bp):
TTCAGC
Found at i:56661254 original size:18 final size:18
Alignment explanation
Indices: 56661231--56661275 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
56661221 TCTTTTCTCT
56661231 TTCAGCTTCAGCATCAGC
1 TTCAGCTTCAGCATCAGC
56661249 TTCAGCTTCAGCATCAGC
1 TTCAGCTTCAGCATCAGC
56661267 TTCAGCTTC
1 TTCAGCTTC
56661276 CTTTATGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.20, C:0.33, G:0.16, T:0.31
Consensus pattern (18 bp):
TTCAGCTTCAGCATCAGC
Found at i:56673380 original size:313 final size:313
Alignment explanation
Indices: 56672812--56673437 Score: 1252
Period size: 313 Copynumber: 2.0 Consensus size: 313
56672802 TCGATGGGGC
56672812 ATAAGACTTCTGGTTGTGCTGTTTTGCATTGTATGCATATGTATGCCAGAGATTTTTATTTGTTC
1 ATAAGACTTCTGGTTGTGCTGTTTTGCATTGTATGCATATGTATGCCAGAGATTTTTATTTGTTC
56672877 CATGTCTATTGATGGAAGTTCGAGTTCAGAAATATATTATAAGTTTGAAGTTCGAAGATTAGAGA
66 CATGTCTATTGATGGAAGTTCGAGTTCAGAAATATATTATAAGTTTGAAGTTCGAAGATTAGAGA
56672942 GTCATATAATTTTCTTACCTCTTTAAGTGTAATCTGATCATTGTTGGTGTCTTCCTCTAGGATTT
131 GTCATATAATTTTCTTACCTCTTTAAGTGTAATCTGATCATTGTTGGTGTCTTCCTCTAGGATTT
56673007 GTTTTCCATCATTCTCAACTGTGTTGTCCAGTTCCAGCTTTTCAGAGACCTGAATGAAAACATAT
196 GTTTTCCATCATTCTCAACTGTGTTGTCCAGTTCCAGCTTTTCAGAGACCTGAATGAAAACATAT
56673072 TGAGAGATTGGTTAAACATGGAGCTTTCAGATTTTAACAAAAATATTGAAATT
261 TGAGAGATTGGTTAAACATGGAGCTTTCAGATTTTAACAAAAATATTGAAATT
56673125 ATAAGACTTCTGGTTGTGCTGTTTTGCATTGTATGCATATGTATGCCAGAGATTTTTATTTGTTC
1 ATAAGACTTCTGGTTGTGCTGTTTTGCATTGTATGCATATGTATGCCAGAGATTTTTATTTGTTC
56673190 CATGTCTATTGATGGAAGTTCGAGTTCAGAAATATATTATAAGTTTGAAGTTCGAAGATTAGAGA
66 CATGTCTATTGATGGAAGTTCGAGTTCAGAAATATATTATAAGTTTGAAGTTCGAAGATTAGAGA
56673255 GTCATATAATTTTCTTACCTCTTTAAGTGTAATCTGATCATTGTTGGTGTCTTCCTCTAGGATTT
131 GTCATATAATTTTCTTACCTCTTTAAGTGTAATCTGATCATTGTTGGTGTCTTCCTCTAGGATTT
56673320 GTTTTCCATCATTCTCAACTGTGTTGTCCAGTTCCAGCTTTTCAGAGACCTGAATGAAAACATAT
196 GTTTTCCATCATTCTCAACTGTGTTGTCCAGTTCCAGCTTTTCAGAGACCTGAATGAAAACATAT
56673385 TGAGAGATTGGTTAAACATGGAGCTTTCAGATTTTAACAAAAATATTGAAATT
261 TGAGAGATTGGTTAAACATGGAGCTTTCAGATTTTAACAAAAATATTGAAATT
56673438 GAGTTAGTAT
Statistics
Matches: 313, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
313 313 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (313 bp):
ATAAGACTTCTGGTTGTGCTGTTTTGCATTGTATGCATATGTATGCCAGAGATTTTTATTTGTTC
CATGTCTATTGATGGAAGTTCGAGTTCAGAAATATATTATAAGTTTGAAGTTCGAAGATTAGAGA
GTCATATAATTTTCTTACCTCTTTAAGTGTAATCTGATCATTGTTGGTGTCTTCCTCTAGGATTT
GTTTTCCATCATTCTCAACTGTGTTGTCCAGTTCCAGCTTTTCAGAGACCTGAATGAAAACATAT
TGAGAGATTGGTTAAACATGGAGCTTTCAGATTTTAACAAAAATATTGAAATT
Found at i:56686549 original size:2 final size:2
Alignment explanation
Indices: 56686544--56686568 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
56686534 ACATACACAC
56686544 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
56686569 ATATGTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:56691775 original size:26 final size:26
Alignment explanation
Indices: 56691746--56691795 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
56691736 TTCGGTTTTA
*
56691746 TTTAAAAT-ATTTATTTCGATTTTAAT
1 TTTAAAATAATTT-CTTCGATTTTAAT
*
56691772 TTTAAATTAATTTCTTCGATTTTA
1 TTTAAAATAATTTCTTCGATTTTA
56691796 CCTTAGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTAAAATAATTTCTTCGATTTTAAT
Found at i:56696229 original size:120 final size:120
Alignment explanation
Indices: 56695936--56696372 Score: 820
Period size: 120 Copynumber: 3.6 Consensus size: 120
56695926 AAGTAGATTA
*
56695936 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATAGTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
*
56696001 AAATTCATATAAGAATATTTAATACTAAAGAATTTTATCAAATTATATATTTTTAT
66 AAATTCATATAAGAATATTTAATACT-AAGAATTTTATTAAATTATATATTTTTAT
56696057 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
56696122 AAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTAT
66 AAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTAT
*
56696177 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTTTATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
* *
56696242 AAATTCATATAGGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGT
66 AAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTAT
56696297 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
56696362 AAATTCATATA
66 AAATTCATATA
56696373 TTTTATTAAA
Statistics
Matches: 310, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
120 220 0.71
121 90 0.29
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
AAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTAT
Found at i:56696294 original size:18 final size:18
Alignment explanation
Indices: 56696273--56696484 Score: 97
Period size: 18 Copynumber: 11.7 Consensus size: 18
56696263 ATACTAAGAA
56696273 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
*
56696291 TTTTGTTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
56696306 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * * *
56696321 TTTAAATTATATTTTATAG
1 TTT-TATTAAATTATATAT
* * *
56696340 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
56696355 TTTTAGTAAATTCATATA-
1 TTTTATTAAATT-ATATAT
56696373 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
56696391 TTTTATTAAATTATAT-T
1 TTTTATTAAATTATATAT
* *
56696408 TAATAATAATTAGTATTATATATTAT
1 T--T--TTATTA--AAT-TATA-TAT
*
56696434 GATTTTAGTAAATTCATATA-
1 --TTTTATTAAATT-ATATAT
56696454 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
56696472 TTTTATTAAATTA
1 TTTTATTAAATTA
56696485 CATTTAATAA
Statistics
Matches: 146, Mismatches: 24, Indels: 48
0.67 0.11 0.22
Matches are distributed among these distances:
13 2 0.01
14 6 0.04
15 5 0.03
16 12 0.08
17 24 0.16
18 65 0.45
19 5 0.03
21 8 0.05
22 5 0.03
23 2 0.01
24 8 0.05
25 1 0.01
26 2 0.01
28 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:56696384 original size:100 final size:98
Alignment explanation
Indices: 56696152--56696484 Score: 290
Period size: 100 Copynumber: 3.3 Consensus size: 98
56696142 AATACTAAGA
* ** * *
56696152 ATTTTATTAAATTATATATTTTTATTAAATTATAT-TTAATAAT-AATTAT-TTTAAATTATATT
1 ATTTTAGTAAATTATATA-TTTTATTAAATTATATATTTTTATTAAATTATATTT-AA-TA-ATA
* * *
56696214 TTATAGTATTTTATATTATGATTTTAGTAAATTCATAT
62 AT-TAGTATTATAAATTATGATTTTAGTAAATTCATAT
* * * * *
56696252 AGGAATATTTAAT-ACTAAGA-ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ----AT-TTTAGTAAATTATATATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAAT
*
56696315 AATTA-T-TT-TAAATTAT-ATTTTATAGTATTATAT-ATTAT
61 AATTAGTATTATAAATTATGA-TTT-TAGTA-AAT-TCA-TAT
56696353 GATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAAT
1 -ATTTTAGTAAATT-ATATATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAAT
*
56696418 TAGTATTATATATTATGATTTTAGTAAATTCATAT
64 TAGTATTATAAATTATGATTTTAGTAAATTCATAT
*
56696453 ATTTTATTAAATTATATATTTTTATTAAATTA
1 ATTTTAGTAAATTATATA-TTTTATTAAATTA
56696485 CATTTAATAA
Statistics
Matches: 190, Mismatches: 21, Indels: 41
0.75 0.08 0.16
Matches are distributed among these distances:
97 6 0.03
98 19 0.10
99 34 0.18
100 55 0.29
101 10 0.05
102 26 0.14
103 17 0.09
104 15 0.08
105 8 0.04
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (98 bp):
ATTTTAGTAAATTATATATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTA
GTATTATAAATTATGATTTTAGTAAATTCATAT
Found at i:56696440 original size:81 final size:81
Alignment explanation
Indices: 56696337--56696500 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 81
56696327 TTATATTTTA
56696337 TAGTATTATATATTATGATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAAT
1 TAGTATTATATATTATGATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAAT
*
56696402 TATATTTAATAATAAT
66 TACATTTAATAATAAT
56696418 TAGTATTATATATTATGATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAAT
1 TAGTATTATATATTATGATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAAT
56696483 TACATTTAATAATAAT
66 TACATTTAATAATAAT
56696499 TA
1 TA
56696501 TGTTAAAATA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (81 bp):
TAGTATTATATATTATGATTTTAGTAAATTCATATATTTTATTAAATTATATATTTTTATTAAAT
TACATTTAATAATAAT
Found at i:56696741 original size:16 final size:16
Alignment explanation
Indices: 56696720--56696772 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
56696710 AGGATTATCT
* *
56696720 ATTACGCCTCTATTAC
1 ATTACGCCTTTATTCC
*
56696736 ATTACGCATTTATTCC
1 ATTACGCCTTTATTCC
*
56696752 ATTACACCTTTATTCC
1 ATTACGCCTTTATTCC
56696768 ATTAC
1 ATTAC
56696773 AGCAAACCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.42
Consensus pattern (16 bp):
ATTACGCCTTTATTCC
Found at i:56697199 original size:17 final size:17
Alignment explanation
Indices: 56697177--56697209 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
56697167 ATATTTTTTA
56697177 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
56697194 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
56697210 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:56697301 original size:26 final size:25
Alignment explanation
Indices: 56697254--56697302 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
56697244 TAATATGGGC
*
56697254 CGGGCCGGGCTTAGCAATTTTTTTT
1 CGGGCCGGGCTTAGCAAATTTTTTT
* *
56697279 CGGGGCGGGCTTGGACAAATTTTT
1 CGGGCCGGGCTTAG-CAAATTTTT
56697303 AGGCTCATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.14, C:0.18, G:0.33, T:0.35
Consensus pattern (25 bp):
CGGGCCGGGCTTAGCAAATTTTTTT
Found at i:56699619 original size:94 final size:97
Alignment explanation
Indices: 56699520--56699721 Score: 250
Period size: 97 Copynumber: 2.1 Consensus size: 97
56699510 TTCTGTCTTT
* * *
56699520 TTTATTATTTGTTTTATAATATTTTAAATATAT-ATATTTTT-TGGAGTCATTCTAAATGGTACC
1 TTTATTATTTATTTTATAATATTTTAAATATATAATATTTTTATGGAGCCATTCTAAATGGCACC
*
56699583 ACCGGTTCATTTAAAC-TTTTTTTATTATTTG
66 ACCAGTTCATTTAAACATTTTTTTATTATTTG
* * * *
56699614 TTTATTATTTATTTTATAATGTTTTAAATGTATAATTTTTTTAGTGGAGCCATTCTAAATGGCGC
1 TTTATTATTTATTTTATAATATTTTAAATATATAATATTTTTA-TGGAGCCATTCTAAATGGCAC
* * ** *
56699679 CATCAGTTTATTTAAACATTTTTTTAAAATTTT
65 CACCAGTTCATTTAAACATTTTTTTATTATTTG
56699712 TTTA-TATTTA
1 TTTATTATTTA
56699722 AAATTTTTAA
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
94 30 0.33
95 7 0.08
97 38 0.42
98 16 0.18
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.54
Consensus pattern (97 bp):
TTTATTATTTATTTTATAATATTTTAAATATATAATATTTTTATGGAGCCATTCTAAATGGCACC
ACCAGTTCATTTAAACATTTTTTTATTATTTG
Found at i:56699736 original size:28 final size:30
Alignment explanation
Indices: 56699687--56699746 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 30
56699677 GCCATCAGTT
**
56699687 TATTTAAACATTTTTTTAAAAT-TTTTTTA
1 TATTTAAACATTTTTAAAAAATATTTTTTA
56699716 TATTTAAA-ATTTTTAAAAAATAATTTTTTA
1 TATTTAAACATTTTTAAAAAAT-ATTTTTTA
56699746 T
1 T
56699747 TTTGTGGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 11 0.41
29 8 0.30
30 8 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (30 bp):
TATTTAAACATTTTTAAAAAATATTTTTTA
Found at i:56700154 original size:99 final size:95
Alignment explanation
Indices: 56700062--56700235 Score: 240
Period size: 95 Copynumber: 1.8 Consensus size: 95
56700052 AAAAACATGT
* * * * *
56700062 TTAAATGAACTGATGACGCCATTTAGAATGACTCCACCAAAAAAATACACCTTTAAAATATTATA
1 TTAAATAAACTGAGGACACAATTTAGAATGACTCCACCAAAAAAATACACATTTAAAATATTATA
*
56700127 AAACAAATAATAAACAAATTTTAAAAAAAA
66 AAACAAACAATAAACAAATTTTAAAAAAAA
* * * * * *
56700157 TTAAATAAATTGGGGGCACAATTTAGAATGACTCCTCCAAAAAAATATATATTTAAAATATTATA
1 TTAAATAAACTGAGGACACAATTTAGAATGACTCCACCAAAAAAATACACATTTAAAATATTATA
56700222 AAACAAACAATAAA
66 AAACAAACAATAAA
56700236 AAAAGACAGA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 67 1.00
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.26
Consensus pattern (95 bp):
TTAAATAAACTGAGGACACAATTTAGAATGACTCCACCAAAAAAATACACATTTAAAATATTATA
AAACAAACAATAAACAAATTTTAAAAAAAA
Found at i:56702982 original size:31 final size:31
Alignment explanation
Indices: 56702925--56702983 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
56702915 ATGTTAAAAT
* * *
56702925 TAAAGTATAGAGATTAAATCTTAAATTTGAG
1 TAAAGTATAGAGATCAAAACTAAAATTTGAG
56702956 TAAAGTATAG-GAATCAAAACTAAAATTT
1 TAAAGTATAGAG-ATCAAAACTAAAATTT
56702984 AACCATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 23 0.96
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.32
Consensus pattern (31 bp):
TAAAGTATAGAGATCAAAACTAAAATTTGAG
Found at i:56706267 original size:11 final size:13
Alignment explanation
Indices: 56706247--56706278 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
56706237 AATAAAATAA
56706247 TAAAATATC-AAT
1 TAAAATATCAAAT
56706259 TAAAA-ATCAAAT
1 TAAAATATCAAAT
56706271 TAAAATAT
1 TAAAATAT
56706279 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 13 0.72
13 2 0.11
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAAATATCAAAT
Found at i:56711964 original size:17 final size:17
Alignment explanation
Indices: 56711934--56711967 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
56711924 CCTCGTTTAA
*
56711934 ATTTAAAATTAAAAAAT
1 ATTTAAAATAAAAAAAT
*
56711951 ATTTAGAATAAAAAAAT
1 ATTTAAAATAAAAAAAT
56711968 CTTCAAATGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATTTAAAATAAAAAAAT
Found at i:56713391 original size:19 final size:19
Alignment explanation
Indices: 56713367--56713412 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
56713357 GGAACTTAAC
*
56713367 TCACTTTAGTGATCCTAAT
1 TCACTTCAGTGATCCTAAT
*
56713386 TCACTTCAGTGATCTTAAT
1 TCACTTCAGTGATCCTAAT
*
56713405 TTACTTCA
1 TCACTTCA
56713413 AAACTCAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (19 bp):
TCACTTCAGTGATCCTAAT
Found at i:56715618 original size:13 final size:13
Alignment explanation
Indices: 56715568--56715628 Score: 68
Period size: 13 Copynumber: 4.7 Consensus size: 13
56715558 ACACTCAAAT
56715568 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
56715581 TTCTCTAAAGTAC
1 TTTTCAAAAGCAC
* *
56715594 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
56715607 TTTTCAAAAGCAT
1 TTTTCAAAAGCAC
56715620 TTTTCAAAA
1 TTTTCAAAA
56715629 TCAATGAAGA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:56719739 original size:10 final size:10
Alignment explanation
Indices: 56719702--56719750 Score: 55
Period size: 10 Copynumber: 4.7 Consensus size: 10
56719692 GCAGAAGGAG
56719702 AAGAAA-AAA
1 AAGAAAGAAA
56719711 AGAGCAAAGAAA
1 A-AG-AAAGAAA
56719723 AACGAAAGAAA
1 AA-GAAAGAAA
56719734 AAGAAAGAAA
1 AAGAAAGAAA
*
56719744 AGGAAAG
1 AAGAAAG
56719751 GAGAAGAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
9 1 0.03
10 16 0.46
11 13 0.37
12 5 0.14
ACGTcount: A:0.73, C:0.04, G:0.22, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:56719755 original size:23 final size:22
Alignment explanation
Indices: 56719729--56719775 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
56719719 GAAAAACGAA
56719729 AGAAAAAGAAAGAA-AAGGAAAGG
1 AGAAAAAG-AAGAAGAAGG-AAGG
*
56719752 AGAAGAAGAAGAAGAAGGAAGG
1 AGAAAAAGAAGAAGAAGGAAGG
56719774 AG
1 AG
56719776 GCGCAGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (22 bp):
AGAAAAAGAAGAAGAAGGAAGG
Found at i:56719757 original size:26 final size:28
Alignment explanation
Indices: 56719696--56719766 Score: 78
Period size: 26 Copynumber: 2.7 Consensus size: 28
56719686 CATTCGGCAG
*
56719696 AAGGAGAAGAAAAA-AAGAGCAAAGAAA
1 AAGGAGAAGAAAAAGAAGAGAAAAGAAA
* *
56719723 AACGA-AAGAAAAAGAA-AGAAAAG-GA
1 AAGGAGAAGAAAAAGAAGAGAAAAGAAA
*
56719748 AAGGAGAAGAAGAAGAAGA
1 AAGGAGAAGAAAAAGAAGA
56719767 AGGAAGGAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
25 5 0.14
26 24 0.67
27 7 0.19
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (28 bp):
AAGGAGAAGAAAAAGAAGAGAAAAGAAA
Found at i:56719836 original size:43 final size:46
Alignment explanation
Indices: 56719737--56719836 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 46
56719727 AAAGAAAAAG
*
56719737 AAAGAAAAGGAAAGGAGAAGAAGAAGAAGAAGGAAGGAGGCGCAGGAA
1 AAAG-AAA-GAAAGGAGAAGAAGAAGAAGAAGGAAGGAGGCGAAGGAA
* *
56719785 AAAG--AGAAA-GAGAAGGAGAAGAAGAA-GAGGGAGG-GAAGGAA
1 AAAGAAAGAAAGGAGAAGAAGAAGAAGAAGGAAGGAGGCGAAGGAA
56719826 AAAGAAAGAAA
1 AAAGAAAGAAA
56719837 AAAAAAGGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
41 10 0.21
42 7 0.15
43 21 0.45
44 4 0.09
45 1 0.02
48 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (46 bp):
AAAGAAAGAAAGGAGAAGAAGAAGAAGAAGGAAGGAGGCGAAGGAA
Found at i:56721091 original size:3 final size:3
Alignment explanation
Indices: 56721085--56721135 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
56721075 CAAGAACAAC
56721085 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
56721133 AAT
1 AAT
56721136 GAAAAGATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:56721497 original size:36 final size:36
Alignment explanation
Indices: 56721457--56721532 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
56721447 TGAAACATAG
*
56721457 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
56721493 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
56721530 AAA
1 AAA
56721533 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:56721895 original size:18 final size:19
Alignment explanation
Indices: 56721856--56721896 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
56721846 ACAAACCAAC
*
56721856 AAAATAAGAACAAGCCACAG
1 AAAATAAGAAC-AGCAACAG
56721876 AAAATAAGAAC-GCAACAG
1 AAAATAAGAACAGCAACAG
56721894 AAA
1 AAA
56721897 GAGAAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
20 11 0.55
ACGTcount: A:0.63, C:0.17, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAATAAGAACAGCAACAG
Found at i:56722080 original size:22 final size:21
Alignment explanation
Indices: 56722045--56722102 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
56722035 AAATGGTATC
* * *
56722045 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
56722066 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
56722089 TGCATATCATATCT
1 TACAAATCATATCT
56722103 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:56722581 original size:159 final size:159
Alignment explanation
Indices: 56722289--56722749 Score: 741
Period size: 158 Copynumber: 2.9 Consensus size: 159
56722279 ATTACAACAA
56722289 TAAATGTATACATTTAAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAATAGA-
1 TAAATGTATACATTTAAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAATA-AT
* * * * * ** *
56722353 AAATTTTTTGAAAGTAATAAAATTCAGGAAAAAAGAAAAATACGAAGAAAGGGCAAAAATAAGGA
65 ATATTTTTTGAAAGTAATAAAAATCGGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGGG
* *
56722418 TTTTTTACAAAATTTATTTAAAACACACAC
130 TTTTTTACTAAATTTATTTAAAAAACACAC
* *
56722448 TAAATGTATACATTTTAAACATAATATAGTAAAATAATATAAAATAATAAAATACGAAAATAATA
1 TAAATGTATACATTTAAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAATAATA
*
56722513 TATTTTTTAAAAGTAATAAAAATCGGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGGG-
66 TATTTTTTGAAAGTAATAAAAATCGGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGGGT
56722577 TTTTTACTAAATTTATTTAAAAAACACAC
131 TTTTTACTAAATTTATTTAAAAAACACAC
*
56722606 TAAATGTATACATTTCAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAAT-ATC
1 TAAATGTATACATTTAAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAATAAT-
56722670 ATATTTTTTGAAAGTAAT-AAAATCTGGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGG
65 ATATTTTTTGAAAGTAATAAAAATC-GGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGG
56722734 GTTTTTTACTAAATTT
129 GTTTTTTACTAAATTT
56722750 GTTTTGAAGT
Statistics
Matches: 282, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
157 8 0.03
158 144 0.51
159 130 0.46
ACGTcount: A:0.54, C:0.07, G:0.11, T:0.28
Consensus pattern (159 bp):
TAAATGTATACATTTAAAACATAATGTAGTAAAATAATATAAAATAATAAAATACGAAAATAATA
TATTTTTTGAAAGTAATAAAAATCGGGAAAAAAGAAAAATACGAACAAAGAGCCGAAATAAGGGT
TTTTTACTAAATTTATTTAAAAAACACAC
Found at i:56725047 original size:8 final size:8
Alignment explanation
Indices: 56725034--56725060 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
56725024 GGGTCTTACA
56725034 ACAACATT
1 ACAACATT
56725042 ACAACATT
1 ACAACATT
56725050 ACAACATT
1 ACAACATT
56725058 ACA
1 ACA
56725061 CATAACAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (8 bp):
ACAACATT
Found at i:56728062 original size:76 final size:76
Alignment explanation
Indices: 56727982--56728123 Score: 214
Period size: 76 Copynumber: 1.9 Consensus size: 76
56727972 ATAGTTTTTT
*
56727982 ACTAAAAATAATACTAACTAACAATAATAATTAGGG-TTTTACTAAAAATAATAACTAACAGTAA
1 ACTAAAAATAATACTAACTAA-AATAATAATTAGGGTTTTTACTAAAAATAATAACTAACAATAA
56728046 TATAATGTAAAA
65 TATAATGTAAAA
* * ***
56728058 ACTAACAATCATACTAACTAAAATAATAATTAGGGTTTTTACTAATCCTAATAACTAACAATAAT
1 ACTAAAAATAATACTAACTAAAATAATAATTAGGGTTTTTACTAAAAATAATAACTAACAATAAT
56728123 A
66 A
56728124 ATATTATTAG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 14 0.24
76 45 0.76
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (76 bp):
ACTAAAAATAATACTAACTAAAATAATAATTAGGGTTTTTACTAAAAATAATAACTAACAATAAT
ATAATGTAAAA
Done.