Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 22 of 199
Found at i:7124097 original size:81 final size:81
Alignment explanation
Indices: 7123958--7124121 Score: 249
Period size: 81 Copynumber: 2.0 Consensus size: 81
7123948 TTCCTCTTTT
* * *
7123958 GTATCCAAGCTAGCTTATTTGAGTAATAGAGATACTTTCACATTCTCTCAACTTTTGCATTATTC
1 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTTCACATTCTCCCAACTCTTGCATTATTC
* * *
7124023 TTTTGTTCTAATCTAA
66 TCTTATGCTAATCTAA
*
7124039 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACA-TTTCCACATTCTCCCAACTCTTGCATTCTT
1 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTT-CACATTCTCCCAACTCTTGCATTATT
7124103 CTCTTATGCTAATCTAA
65 CTCTTATGCTAATCTAA
7124120 GT
1 GT
7124122 TCCCTTTTCC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 3 0.04
81 72 0.96
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (81 bp):
GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTTCACATTCTCCCAACTCTTGCATTATTC
TCTTATGCTAATCTAA
Found at i:7128532 original size:30 final size:30
Alignment explanation
Indices: 7128498--7128558 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7128488 AATTCAGAAT
7128498 ATTCCAATTATCTCATAATCTCACATTCTC
1 ATTCCAATTATCTCATAATCTCACATTCTC
7128528 ATTCCAATTATCTCATAATCTCACATTCTC
1 ATTCCAATTATCTCATAATCTCACATTCTC
7128558 A
1 A
7128559 AATAAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.30, G:0.00, T:0.39
Consensus pattern (30 bp):
ATTCCAATTATCTCATAATCTCACATTCTC
Found at i:7129504 original size:14 final size:14
Alignment explanation
Indices: 7129485--7129529 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7129475 TAAATTTTTT
7129485 TAATATTTATATTA
1 TAATATTTATATTA
7129499 TAATATTATATATT-
1 TAATATT-TATATTA
7129513 T-A-ATTT-TATTA
1 TAATATTTATATTA
7129524 TAATAT
1 TAATAT
7129530 ATAAACATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.15
11 2 0.07
12 4 0.15
13 3 0.11
14 8 0.30
15 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:7129530 original size:22 final size:21
Alignment explanation
Indices: 7129487--7129532 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7129477 AATTTTTTTA
*
7129487 ATATTTATATTATAATATTAT
1 ATATTTATATTATAATAATAT
* *
7129508 ATATTTAATTTTATTATAATAT
1 ATATTT-ATATTATAATAATAT
7129530 ATA
1 ATA
7129533 AACATGAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATTTATATTATAATAATAT
Found at i:7140063 original size:3 final size:3
Alignment explanation
Indices: 7140057--7140082 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7140047 TATTTTTTTT
7140057 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
7140083 CAAGATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7154042 original size:14 final size:14
Alignment explanation
Indices: 7154023--7154049 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7154013 GAATAATTTT
7154023 AAAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
7154037 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
7154050 GGAAATATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:7162237 original size:15 final size:15
Alignment explanation
Indices: 7162217--7162253 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7162207 ACACACGGTC
*
7162217 GTGTCACCTGGCCGT
1 GTGTCACCTGGCCAT
*
7162232 GTGTCATCTGGCCAT
1 GTGTCACCTGGCCAT
7162247 GTGTCAC
1 GTGTCAC
7162254 ACACGGCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.30, T:0.30
Consensus pattern (15 bp):
GTGTCACCTGGCCAT
Found at i:7164629 original size:19 final size:18
Alignment explanation
Indices: 7164607--7164647 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
7164597 GCTTATTATG
7164607 TTAATTAAGTTAGATTAA
1 TTAATTAAGTTAGATTAA
* *
7164625 CTTAATTAATTTAGGTTAA
1 -TTAATTAAGTTAGATTAA
7164644 TTAA
1 TTAA
7164648 AGATTATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (18 bp):
TTAATTAAGTTAGATTAA
Found at i:7166252 original size:29 final size:28
Alignment explanation
Indices: 7166211--7166277 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
7166201 TATAATATAT
* *
7166211 ATAAATTAAAATATTTAAATAAATTTAA
1 ATAAATTAAAATATTGAAATAAATTGAA
*
7166239 ATAAATTAACAATATTGAAATAAGTTGAA
1 ATAAATTAA-AATATTGAAATAAATTGAA
7166268 ATAAATTAAA
1 ATAAATTAAA
7166278 GATGTTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (28 bp):
ATAAATTAAAATATTGAAATAAATTGAA
Found at i:7166288 original size:29 final size:28
Alignment explanation
Indices: 7166211--7166289 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
7166201 TATAATATAT
* *
7166211 ATAAATTAAAATATTTAAATAAATTTAA
1 ATAAATTAAAATATTAAAATAAATTGAA
* *
7166239 ATAAATTAACAATATTGAAATAAGTTGAA
1 ATAAATTAA-AATATTAAAATAAATTGAA
*
7166268 ATAAATTAAAGATGTTAAAATA
1 ATAAATTAAA-ATATTAAAATA
7166290 TTTGAAAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 10 0.23
29 34 0.77
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.34
Consensus pattern (28 bp):
ATAAATTAAAATATTAAAATAAATTGAA
Found at i:7166592 original size:16 final size:16
Alignment explanation
Indices: 7166573--7166624 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
7166563 AGCTTAAAAC
7166573 AAAATACATATATA-AT
1 AAAATA-ATATATATAT
*
7166589 AAAATAATGTATATAT
1 AAAATAATATATATAT
*
7166605 AAAATAAGTAAATATAT
1 AAAATAA-TATATATAT
7166622 AAA
1 AAA
7166625 CGAATAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 6 0.19
16 15 0.48
17 10 0.32
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (16 bp):
AAAATAATATATATAT
Found at i:7166603 original size:17 final size:16
Alignment explanation
Indices: 7166581--7166624 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7166571 ACAAAATACA
7166581 TATATAATAAAATAATG
1 TATATAATAAAATAA-G
7166598 TATAT-ATAAAATAAG
1 TATATAATAAAATAAG
*
7166613 TAAATATATAAA
1 TATATA-ATAAA
7166625 CGAATAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 10 0.42
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (16 bp):
TATATAATAAAATAAG
Found at i:7171155 original size:31 final size:31
Alignment explanation
Indices: 7171088--7171168 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
7171078 TTTAGGTCAT
* * * *
7171088 GACTAAAATTTTAAAAATTTGAAAAGTATAAG
1 GACTAAAA-TTGAAAAATTTAAAAAGTACAAA
*
7171120 GACTAAAATTGAAAATTTTAAAAAGTACAAA
1 GACTAAAATTGAAAAATTTAAAAAGTACAAA
7171151 GACTAAAATTGAACAAAT
1 GACTAAAATTGAA-AAAT
7171169 AAAAGAACAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 31 0.74
32 11 0.26
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (31 bp):
GACTAAAATTGAAAAATTTAAAAAGTACAAA
Found at i:7172235 original size:274 final size:274
Alignment explanation
Indices: 7171742--7172294 Score: 1045
Period size: 274 Copynumber: 2.0 Consensus size: 274
7171732 TTTTGGAGGG
*
7171742 GCTCCATGATCATTGGTATTACTATTTCCAATGAATGAATTTAGGGTCTGTTTGATAAAGGAAAA
1 GCTCCATGATCATTGGTATTACTATTTCCAATGAATGAATTTAGGGTCTATTTGATAAAGGAAAA
*
7171807 ATATTTTTCGGAATTGATTTTCCCCATTTTCCAATGTTTGTTTGGAGGAAAATATTTTACTTTTG
66 ATATTTTTCAGAATTGATTTTCCCCATTTTCCAATGTTTGTTTGGAGGAAAATATTTTACTTTTG
7171872 TAAAATCAATTCCACAACACGGGTAAAATCATCTCATCTTTCCGAAAAATGTCTTACCCCTTAGA
131 TAAAATCAATTCCACAACACGGGTAAAATCATCTCATCTTTCCGAAAAATGTCTTACCCCTTAGA
*
7171937 AATCGGTAAGACATTTTTCACAGCTCATCTATTCACCTTTGAAACCCTTTCCACAGCTCCTTTCT
196 AATCGGTAAGACATTTTCCACAGCTCATCTATTCACCTTTGAAACCCTTTCCACAGCTCCTTTCT
*
7172002 TCAGCCTTTCCACA
261 TCACCCTTTCCACA
7172016 GCTCCATGATCATTGGTATTACTATTTCCAATGAATGAATTTAGGGTCTATTTGATAAAGGAAAA
1 GCTCCATGATCATTGGTATTACTATTTCCAATGAATGAATTTAGGGTCTATTTGATAAAGGAAAA
7172081 ATATTTTTCAGAATT-AGTTTTCCCCATTTTCCAATGTTTGTTTGGAGGAAAATATTTTACTTTT
66 ATATTTTTCAGAATTGA-TTTTCCCCATTTTCCAATGTTTGTTTGGAGGAAAATATTTTACTTTT
*
7172145 GTAAAATCAATTCCACAACACGGGTAAAATCATCTCATCTTTCCGGAAAATGTCTTACCCCTTAG
130 GTAAAATCAATTCCACAACACGGGTAAAATCATCTCATCTTTCCGAAAAATGTCTTACCCCTTAG
7172210 AAATCGGTAAGACATTTTCCACAGCTCATCTATTCACCTTTGAAACCCTTTCCACAGCTCCTTTC
195 AAATCGGTAAGACATTTTCCACAGCTCATCTATTCACCTTTGAAACCCTTTCCACAGCTCCTTTC
7172275 TTCACCCTTTCCACA
260 TTCACCCTTTCCACA
7172290 GCTCC
1 GCTCC
7172295 TCTCTTCACC
Statistics
Matches: 273, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
273 1 0.00
274 272 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (274 bp):
GCTCCATGATCATTGGTATTACTATTTCCAATGAATGAATTTAGGGTCTATTTGATAAAGGAAAA
ATATTTTTCAGAATTGATTTTCCCCATTTTCCAATGTTTGTTTGGAGGAAAATATTTTACTTTTG
TAAAATCAATTCCACAACACGGGTAAAATCATCTCATCTTTCCGAAAAATGTCTTACCCCTTAGA
AATCGGTAAGACATTTTCCACAGCTCATCTATTCACCTTTGAAACCCTTTCCACAGCTCCTTTCT
TCACCCTTTCCACA
Found at i:7172282 original size:24 final size:24
Alignment explanation
Indices: 7172254--7172306 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
7172244 CACCTTTGAA
*
7172254 ACCCTTTCCACAGCTCCTTTCTTC
1 ACCCTTTCCACAGCTCCTCTCTTC
7172278 ACCCTTTCCACAGCTCCTCTCTTC
1 ACCCTTTCCACAGCTCCTCTCTTC
7172302 ACCCT
1 ACCCT
7172307 ATCGATTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.13, C:0.49, G:0.04, T:0.34
Consensus pattern (24 bp):
ACCCTTTCCACAGCTCCTCTCTTC
Found at i:7175364 original size:50 final size:50
Alignment explanation
Indices: 7175309--7175409 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
7175299 AAAGATAGTT
7175309 AAAAATGTGATTACTAGGAATACTTATAATTATGGGAAAATGTTGCTAAA
1 AAAAATGTGATTACTAGGAATACTTATAATTATGGGAAAATGTTGCTAAA
7175359 AAAAATGTGATTACTAGGAATACTTATAATTATGGGAAAATGTTGCTAAA
1 AAAAATGTGATTACTAGGAATACTTATAATTATGGGAAAATGTTGCTAAA
7175409 A
1 A
7175410 TATTAAGAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.32
Consensus pattern (50 bp):
AAAAATGTGATTACTAGGAATACTTATAATTATGGGAAAATGTTGCTAAA
Found at i:7189276 original size:6 final size:6
Alignment explanation
Indices: 7189237--7189274 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
7189227 ATTCGGCGGC
* *
7189237 GGTGGC GGTGGA GGTGGA GGTGGA GGTGGA GGAGGA GG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GG
7189275 AGACAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.03, G:0.68, T:0.13
Consensus pattern (6 bp):
GGTGGA
Found at i:7191647 original size:18 final size:18
Alignment explanation
Indices: 7191624--7191658 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7191614 TGGTTGAGCT
7191624 AATTTTTTATTTTTAATG
1 AATTTTTTATTTTTAATG
7191642 AATTTTTTATTTTTAAT
1 AATTTTTTATTTTTAAT
7191659 AATGTATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
AATTTTTTATTTTTAATG
Found at i:7192189 original size:591 final size:591
Alignment explanation
Indices: 7191072--7192830 Score: 3490
Period size: 591 Copynumber: 3.0 Consensus size: 591
7191062 GTGTGCATTA
7191072 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGG-TTTTT
1 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
7191136 TTGATGTGGTCCTTTT---GGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
66 TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
7191198 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
131 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
7191263 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
196 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
7191328 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
261 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
7191393 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
326 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
7191458 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
391 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
7191523 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
456 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
7191588 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTTTATT
521 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTTTATT
7191653 TTTAAT
586 TTTAAT
7191659 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
1 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
7191724 TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
66 TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
7191789 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
131 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
7191854 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
196 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
7191919 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
261 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
7191984 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
326 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
7192049 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
391 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
7192114 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
456 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
7192179 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTTTATT
521 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTTTATT
7192244 TTTAAT
586 TTTAAT
7192250 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
1 AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
7192315 TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
66 TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
7192380 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
131 GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
7192445 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
196 CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
7192510 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
261 AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
7192575 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
326 AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
7192640 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
391 CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
7192705 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
456 TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
7192770 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTT
521 CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTT
7192831 AATAATTTAT
Statistics
Matches: 1168, Mismatches: 0, Indels: 4
1.00 0.00 0.00
Matches are distributed among these distances:
587 59 0.05
588 21 0.02
591 1088 0.93
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (591 bp):
AATGTATGGTTTTGGACCATTGAACTTTAGAGTAGGCAGGGTGTTAAATTAGGTGAGGGTTTTTT
TTGATGTGGTCCTTTTGGGGGGGGGGTGTTGGATATTGACATCTTTTGCAATATTTGGACTTAGA
GGTTGAGTTCTGGGCTGCTATCTCTTAGCCGAAACAATGATAAGGAGACTGCCTTTGCTACAAAG
CCTAGATGCGGGGGTTTTTTTTTTTTTGGGGGGGGGGTGGGGGAGGGGGTTGATCATTATTCATC
AACTTGGCTAGAAGGAGTTAGGCTGGACCACCACTGGTCCAGGTTCTCTGCTGTCTCGTTTGGCC
AAATGTTTGCTGCTCATGGGTCCGGTGGTCAGTCAGATTTTAGAGCTGAAAACCACGTATGCCTC
CAACCCAGATTATCTCGAAATTTAGTAAGGTTTTAACAAAATCTTTTACTCACTGTTTCGGGAAT
TGGATTGATTAAATTGAAAATCAATTGGAGTATCAAATTGGTGAAAGGAATTGGATCAATTGACC
CGTAAATCAATATGGATTGGTTAAATTGGTTGAGCTAATTTTTTATTTTTAATGAATTTTTTATT
TTTAAT
Found at i:7192238 original size:18 final size:18
Alignment explanation
Indices: 7192215--7192249 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7192205 TGGTTGAGCT
7192215 AATTTTTTATTTTTAATG
1 AATTTTTTATTTTTAATG
7192233 AATTTTTTATTTTTAAT
1 AATTTTTTATTTTTAAT
7192250 AATGTATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
AATTTTTTATTTTTAATG
Found at i:7196963 original size:48 final size:50
Alignment explanation
Indices: 7196891--7196985 Score: 149
Period size: 48 Copynumber: 1.9 Consensus size: 50
7196881 TTGTAAAACA
* *
7196891 TGTTTTTTTTAAAATAATATTATTAGTTTAATTGATTGAGATTAATGATT
1 TGTTTTTTTTAAAATAATATTATTACTTTAATTGATTGAGATAAATGATT
*
7196941 TGTTTTTTTT-AAA-AATATTATTACTTTAATTTATTGAGATAAATG
1 TGTTTTTTTTAAAATAATATTATTACTTTAATTGATTGAGATAAATG
7196986 CTGTTTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 29 0.69
49 3 0.07
50 10 0.24
ACGTcount: A:0.35, C:0.01, G:0.11, T:0.54
Consensus pattern (50 bp):
TGTTTTTTTTAAAATAATATTATTACTTTAATTGATTGAGATAAATGATT
Found at i:7197007 original size:48 final size:48
Alignment explanation
Indices: 7196901--7197007 Score: 110
Period size: 48 Copynumber: 2.2 Consensus size: 48
7196891 TGTTTTTTTT
* * * ***
7196901 AAAATAATATTATTAGTTTAATTGATTGAGATTAATGATTTGTTTTTTTT
1 AAAAT-ATATTATTACTTTAATTGATTGAGATAAATGA-CTGTTTTTAAA
*
7196951 AAAA-ATATTATTACTTTAATTTATTGAGATAAATG-CTGTTTTTAAAA
1 AAAATATATTATTACTTTAATTGATTGAGATAAATGACTGTTTTT-AAA
7196998 AAAATATATT
1 AAAATATATT
7197008 TTTGGTAATT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
46 7 0.15
47 4 0.08
48 33 0.69
50 4 0.08
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (48 bp):
AAAATATATTATTACTTTAATTGATTGAGATAAATGACTGTTTTTAAA
Found at i:7201766 original size:2 final size:2
Alignment explanation
Indices: 7201759--7201792 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7201749 TTTGCAGAAC
7201759 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7201793 GACTTCTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7203238 original size:24 final size:24
Alignment explanation
Indices: 7203188--7203252 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
7203178 AGAAATTAAA
** * *
7203188 TTATAATTTTTAATAGTTTATATTT
1 TTATAATTTTTAA-AAATTAAAATT
7203213 TTATAATTTTTAAAAATTAAAATT
1 TTATAATTTTTAAAAATTAAAATT
*
7203237 TTAAAATTTTTAAAAA
1 TTATAATTTTTAAAAA
7203253 ATTTAGATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 22 0.63
25 13 0.37
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTATAATTTTTAAAAATTAAAATT
Found at i:7204324 original size:173 final size:173
Alignment explanation
Indices: 7204035--7204381 Score: 694
Period size: 173 Copynumber: 2.0 Consensus size: 173
7204025 TTCAATTTAA
7204035 TCTGTTGAGTTTACTTGACAATTTGTGGAATTATGTATTACTTGCTTTATTTTTTTAATAGCTTA
1 TCTGTTGAGTTTACTTGACAATTTGTGGAATTATGTATTACTTGCTTTATTTTTTTAATAGCTTA
7204100 TACTGTTAGTGAATTAGATAGATTTACTCCTTGTTATACCTGTATCTAAGTTGAAATTATATATG
66 TACTGTTAGTGAATTAGATAGATTTACTCCTTGTTATACCTGTATCTAAGTTGAAATTATATATG
7204165 CCTTTGCATTCCAAATATGAAAAATTGGAAATTAGGCATAGCC
131 CCTTTGCATTCCAAATATGAAAAATTGGAAATTAGGCATAGCC
7204208 TCTGTTGAGTTTACTTGACAATTTGTGGAATTATGTATTACTTGCTTTATTTTTTTAATAGCTTA
1 TCTGTTGAGTTTACTTGACAATTTGTGGAATTATGTATTACTTGCTTTATTTTTTTAATAGCTTA
7204273 TACTGTTAGTGAATTAGATAGATTTACTCCTTGTTATACCTGTATCTAAGTTGAAATTATATATG
66 TACTGTTAGTGAATTAGATAGATTTACTCCTTGTTATACCTGTATCTAAGTTGAAATTATATATG
7204338 CCTTTGCATTCCAAATATGAAAAATTGGAAATTAGGCATAGCC
131 CCTTTGCATTCCAAATATGAAAAATTGGAAATTAGGCATAGCC
7204381 T
1 T
7204382 ATTTAAATTG
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 174 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (173 bp):
TCTGTTGAGTTTACTTGACAATTTGTGGAATTATGTATTACTTGCTTTATTTTTTTAATAGCTTA
TACTGTTAGTGAATTAGATAGATTTACTCCTTGTTATACCTGTATCTAAGTTGAAATTATATATG
CCTTTGCATTCCAAATATGAAAAATTGGAAATTAGGCATAGCC
Found at i:7206209 original size:15 final size:16
Alignment explanation
Indices: 7206179--7206211 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7206169 AAGCTGTGTA
*
7206179 AACACAAACGCAACAC
1 AACACAAACACAACAC
7206195 AACAC-AACACAACAC
1 AACACAAACACAACAC
7206210 AA
1 AA
7206212 ATGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00
Consensus pattern (16 bp):
AACACAAACACAACAC
Found at i:7207428 original size:4 final size:4
Alignment explanation
Indices: 7207419--7207443 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7207409 TTATGAATCC
7207419 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
7207444 GAGTATATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:7207919 original size:27 final size:27
Alignment explanation
Indices: 7207889--7207941 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7207879 CATCTGAATA
* *
7207889 TTACATTCTAACTAAATGAACCAAATC
1 TTACATTCCAACCAAATGAACCAAATC
*
7207916 TTACATTCCAACCAAATGAATCAAAT
1 TTACATTCCAACCAAATGAACCAAAT
7207942 AAGATAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (27 bp):
TTACATTCCAACCAAATGAACCAAATC
Found at i:7214775 original size:18 final size:18
Alignment explanation
Indices: 7214757--7214790 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7214747 GTATTTCTAT
7214757 TTCTT-CTCTTATTCTTA
1 TTCTTACTCTTATTCTTA
*
7214774 TTCTTATTCTTATTCTT
1 TTCTTACTCTTATTCTT
7214791 CTTTTTCTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCTTACTCTTATTCTTA
Found at i:7214798 original size:6 final size:6
Alignment explanation
Indices: 7214763--7214790 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7214753 CTATTTCTTC
7214763 TCTTAT TCTTAT TCTTAT TCTTAT TCTT
1 TCTTAT TCTTAT TCTTAT TCTTAT TCTT
7214791 CTTTTTCTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (6 bp):
TCTTAT
Found at i:7215433 original size:17 final size:18
Alignment explanation
Indices: 7215394--7215435 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
7215384 AATATTTATG
7215394 GATAAAAATTTATAAAAT
1 GATAAAAATTTATAAAAT
* * *
7215412 AATAAAAATTT-TATATT
1 GATAAAAATTTATAAAAT
7215429 GATAAAA
1 GATAAAA
7215436 TAGATATTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
GATAAAAATTTATAAAAT
Found at i:7216364 original size:44 final size:45
Alignment explanation
Indices: 7216280--7216366 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 45
7216270 AACTTCAGGG
* *
7216280 AGATAAGACTTGTATTCTTCAATCTACTCCACTGCAACTTTAGAA
1 AGATAAGACTTGTATGCTTCAATCCACTCCACTGCAACTTTAGAA
* ** *
7216325 AGATACGACTTGTA-GCTTCAATCCACTCTGCTGCGACTTTAG
1 AGATAAGACTTGTATGCTTCAATCCACTCCACTGCAACTTTAG
7216367 GGGGTGAGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 23 0.64
45 13 0.36
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (45 bp):
AGATAAGACTTGTATGCTTCAATCCACTCCACTGCAACTTTAGAA
Found at i:7216497 original size:44 final size:44
Alignment explanation
Indices: 7216445--7216610 Score: 136
Period size: 44 Copynumber: 3.6 Consensus size: 44
7216435 TTAACCCGAC
* * * *
7216445 CTATTGCAACTTCAGAGG-TATAGGATTCATCGCTTTAATCTGCT
1 CTATTGCAACTTCAG-GGAGATAGGATTAATAGCTTCAATCTGCT
*
7216489 CTATTGCAACTTTAGGGAGATAGGATTAATAGCTTCAATCTGCT
1 CTATTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCT
* * * * *
7216533 CCACTACAACTTCAGGGAGATAAGATTGGTTATTTATAGCTTTAATCTGCT
1 CTATTGCAACTTCAGGGAGAT---A--GG--ATTAATAGCTTCAATCTGCT
* * *
7216584 CTACTGCAACTTCAGAGAGATAAGATT
1 CTATTGCAACTTCAGGGAGATAGGATT
7216611 TGCTATCTTC
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.02
44 56 0.57
46 1 0.01
47 1 0.01
48 1 0.01
49 2 0.02
51 36 0.36
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (44 bp):
CTATTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCT
Found at i:7216584 original size:95 final size:96
Alignment explanation
Indices: 7216476--7216653 Score: 250
Period size: 96 Copynumber: 1.9 Consensus size: 96
7216466 AGGATTCATC
* * * * *
7216476 GCTTTAATCTGCTCTATTGCAACTTTAGGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTAC
1 GCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTAATAGCTTCAATATGCTCCACTAC
7216540 AACTTCAGGGAGATAAGATTGGTTATTTATA
66 AACTTCAGGGAGATAAGATTGGTTATTTATA
** * * **
7216571 GCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAGTATGCTCCACTGT
1 GCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTAATAGCTTCAATATGCTCCACTAC
7216636 AACTTCAGGGAGATAAGA
66 AACTTCAGGGAGATAAGA
7216654 CTTTGCCGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
95 34 0.48
96 37 0.52
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (96 bp):
GCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTAATAGCTTCAATATGCTCCACTAC
AACTTCAGGGAGATAAGATTGGTTATTTATA
Found at i:7216754 original size:50 final size:50
Alignment explanation
Indices: 7216679--7217061 Score: 356
Period size: 50 Copynumber: 7.7 Consensus size: 50
7216669 CTGTTCGCCA
* *
7216679 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATATCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * ** * ** * *
7216729 GGGAAGCAAGATTCGCTATTGTAGCTTAAATCTGTTCCACTACACCGCCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* *
7216779 AGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
** ** * * **** *
7216829 ATGAAGCAAGATTCGCCATTGTAGCTTCAATCTGTTTCACTGCACCACCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
** * * * * *
7216879 GAAAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAATTGTAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * ** ** *
7216929 GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCG-CTA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-G
* *
7216979 GGGAAGTAAGATTCGCTGTTATAGCTTCAATCTATTTAACTGTC-ATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTG-CAATGTCG
*
7217029 GGGAAGCAAGGTTCGCTGTTGTAGCTTCAATCT
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
7217062 GTTCCACTGC
Statistics
Matches: 256, Mismatches: 74, Indels: 6
0.76 0.22 0.02
Matches are distributed among these distances:
49 1 0.00
50 253 0.99
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
Found at i:7217077 original size:100 final size:100
Alignment explanation
Indices: 7216674--7217082 Score: 604
Period size: 100 Copynumber: 4.1 Consensus size: 100
7216664 TTGATCTGTT
*
7216674 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATATCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* *
7216739 ATTCGCTATTGTAGCTTAAATCTGTTCCACTACAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTGCAC
* **
7216774 CGCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGATGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* *
7216839 ATTCGCCATTGTAGCTTCAATCTGTTTCACTGCAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTGCAC
* ** * * * *
7216874 CACCAGAAAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAATTGTAATGTCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* *
7216939 ATTCACTGTTGTAGCTTCAATCTGTTCCACTGCAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTGCAC
* *
7216974 CGCTAGGGAAGTAAGATTCGCTGTTATAGCTTCAATCTATTTAACTGTC-ATGTCGGGGAAGCAA
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTG-CAATGTCGGGGAAGCAA
* *
7217038 GGTTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAC
65 GATTCGCTATTGTAGCTTCAATCTGTTCCACTGCAC
*
7217074 CGCTAGGGA
1 CGCCAGGGA
7217083 GATAAGGTTG
Statistics
Matches: 275, Mismatches: 33, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
100 275 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (100 bp):
CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
ATTCGCTATTGTAGCTTCAATCTGTTCCACTGCAC
Found at i:7217160 original size:47 final size:45
Alignment explanation
Indices: 7217077--7217182 Score: 133
Period size: 47 Copynumber: 2.3 Consensus size: 45
7217067 ACTGCACCGC
* * * *
7217077 TAGGGAGATAAG-GTTGGTGGCTTTAATCTGCTCTACTGCAACTT
1 TAGGGAGATAAGATTTGGCGGCTTCAATCTACTCTACTGCAACTT
7217121 TAGGGAGATAAGATTTGGCCGGTCTTCAATCTACTCTACTGCAACTT
1 TAGGGAGATAAGATTTGG-CGG-CTTCAATCTACTCTACTGCAACTT
* *
7217168 CAGAGAGATAAGATT
1 TAGGGAGATAAGATT
7217183 AGTTTATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 12 0.23
45 4 0.08
46 2 0.04
47 35 0.66
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (45 bp):
TAGGGAGATAAGATTTGGCGGCTTCAATCTACTCTACTGCAACTT
Found at i:7217431 original size:46 final size:45
Alignment explanation
Indices: 7217293--7217505 Score: 162
Period size: 46 Copynumber: 4.7 Consensus size: 45
7217283 TTCAATCTAT
** * * * * * *
7217293 TCCACTGCAACTTCAGAAAAATAA-AATTCGCTATCTTTAGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTATGC
* *
7217338 TCCACTACAACTTTAGGGAGATAAGACTTGGTTATCTTCAGTATGC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTATGC
* * *
7217384 TCCACTGCAACTTCAGGGAGATAAGACTTGTTATAGTGTGA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTTAT-CT-TCAGTATGC
* ** * *
7217430 TCTACTGCAACTTCAAAGAGATAAGA-TCTGTTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGTTATCTTCAGTATGC
* * * *
7217475 TCTACTGCAACCTCAGTGAGACAAGACTTGT
1 TCCACTGCAACTTCAGGGAGATAAGACTTGT
7217506 AGCTTCAACT
Statistics
Matches: 136, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
44 2 0.01
45 55 0.40
46 77 0.57
47 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTATGC
Found at i:7217633 original size:44 final size:44
Alignment explanation
Indices: 7217585--7217702 Score: 200
Period size: 44 Copynumber: 2.7 Consensus size: 44
7217575 CCATCATTTT
* *
7217585 AATCCACTCCACTGCAACTTCAGGGAGATAGGACTAGTAACCTC
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGACTAGTAACCTC
*
7217629 AATCCGCTCCACTACAACTTCAGGGAGATAGGACTAGTAACTTC
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGACTAGTAACCTC
*
7217673 AATCTGCTCCACTACAACTTCAGGGAGATA
1 AATCCGCTCCACTACAACTTCAGGGAGATA
7217703 AGATTTTCTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (44 bp):
AATCCGCTCCACTACAACTTCAGGGAGATAGGACTAGTAACCTC
Found at i:7217989 original size:72 final size:72
Alignment explanation
Indices: 7217844--7217980 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
7217834 GATTCGCTAC
* * * * * *
7217844 CTTTAGCTTTAATCTATTCTACTATAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
7217909 CCCTCCA
66 CCCTCCA
* * *
7217916 CTTTAGCTTTAATCTATTCCACTACAATGCCAATGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
7217981 TGTTCCACTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (72 bp):
CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
CCCTCCA
Found at i:7218176 original size:45 final size:45
Alignment explanation
Indices: 7218106--7218601 Score: 562
Period size: 45 Copynumber: 11.1 Consensus size: 45
7218096 GACTAGTGTT
* * * *
7218106 TTCGACCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
* *
7218151 TTCGATCTACTTTGCTGCCAATACAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
* *
7218196 TTCGATCTACTTCGCTGCCAATATAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
* *
7218241 TTCGATCTACTTCGTTGCCAATACAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
* * *
7218286 -TCTGATATACATT-GCTGCCAATACAGGAAGACAATA-CTTGATATC
1 TTC-GATCTAC-TTCGCTGCCAATACAGGAAGACAAGATC-TGCTATC
* * * *
7218331 TTTGATCTACTTCGCTACCAATACAGGAAGACAA-AACTTGCTATT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATC-TGCTATC
*
7218376 TTCGATCTAC-TCTGCTGCCAATATAGGAAGACAAGATCTGCTATC
1 TTCGATCTACTTC-GCTGCCAATACAGGAAGACAAGATCTGCTATC
*
7218421 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGA-CATGCTATA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATC-TGCTATC
* *
7218466 TTCGATCTACTAT-GTTGCCAATACAGGAAGACAATATCTGCTATC
1 TTCGATCTACT-TCGCTGCCAATACAGGAAGACAAGATCTGCTATC
* * * *** * * *
7218511 TTCGACCTACTCCACTGCTGCT-CAGGGAGACGAG-GCTTG-TATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATC-TGCTATC
* *
7218554 TTCGATCTACTTCGCTGCCAATACAGAAAGACAAGATCTGCAATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
7218599 TTC
1 TTC
7218602 TTCAATCCAT
Statistics
Matches: 383, Mismatches: 51, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
43 21 0.05
44 31 0.08
45 322 0.84
46 9 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (45 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATC
Found at i:7218937 original size:24 final size:24
Alignment explanation
Indices: 7218905--7218956 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7218895 CCGGCTTGCC
* *
7218905 CCACTATAATCTTCAAGGTTCAAT
1 CCACCATAACCTTCAAGGTTCAAT
*
7218929 CCACCATAACCTTTAAGGTTCAAT
1 CCACCATAACCTTCAAGGTTCAAT
7218953 CCAC
1 CCAC
7218957 TGCACCTTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.29
Consensus pattern (24 bp):
CCACCATAACCTTCAAGGTTCAAT
Found at i:7219066 original size:45 final size:46
Alignment explanation
Indices: 7218985--7219073 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 46
7218975 AATTTGAACC
* * *
7218985 ATCCTCCTCCTACTGTAATTTAGGAGTATAAGATCTGATTCTCTCA
1 ATCCTCCTCCTACTGCAATTTAGGAGTACAAGATCTGAATCTCTCA
**
7219031 ATCCT-CTCCTACTGCAATTTAAGGA-TACATTATCTGAATCTCT
1 ATCCTCCTCCTACTGCAATTT-AGGAGTACAAGATCTGAATCTCT
7219074 TTGGCCTTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 28 0.76
46 9 0.24
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (46 bp):
ATCCTCCTCCTACTGCAATTTAGGAGTACAAGATCTGAATCTCTCA
Found at i:7222036 original size:50 final size:50
Alignment explanation
Indices: 7221929--7222064 Score: 209
Period size: 50 Copynumber: 2.7 Consensus size: 50
7221919 ACATGCCAAA
** *
7221929 GCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGGTGCCCAT
* **
7221980 GCCATGTCGCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCAT
7222030 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7222065 TTACCCAAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
50 48 0.63
51 28 0.37
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCAT
Found at i:7222436 original size:30 final size:30
Alignment explanation
Indices: 7222401--7222458 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
7222391 CCTCGACTCT
*
7222401 AACTTTTTCAAAATTACGA-TTTTGCCCCTA
1 AACTTTTGCAAAATTAC-ATTTTTGCCCCTA
*
7222431 AACTTTTGCATAATTACATTTTTGCCCC
1 AACTTTTGCAAAATTACATTTTTGCCCC
7222459 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTTGCAAAATTACATTTTTGCCCCTA
Found at i:7263244 original size:5 final size:5
Alignment explanation
Indices: 7263234--7263261 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7263224 TTTGATGAAA
7263234 AATGC AATGC AATGC AATGC AATGC AAT
1 AATGC AATGC AATGC AATGC AATGC AAT
7263262 CATAACCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (5 bp):
AATGC
Found at i:7266045 original size:12 final size:12
Alignment explanation
Indices: 7266028--7266060 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7266018 CGGCCCTCCA
7266028 ATATTAATTTTT
1 ATATTAATTTTT
7266040 ATATT-ATTTTT
1 ATATTAATTTTT
7266051 ATA-TAATTTT
1 ATATTAATTTT
7266061 CAAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:7266433 original size:404 final size:402
Alignment explanation
Indices: 7265675--7266469 Score: 1545
Period size: 404 Copynumber: 2.0 Consensus size: 402
7265665 AATTTATTGA
7265675 AATTTAATAAATTCACTCATGGTTGTATATATTAAATTTTATAATTCAAGTATTTTATTGAAATA
1 AATTTAATAAATTCACTCATGGTTGTATATATTAAATTTTATAATTCAAGTATTTTATTGAAATA
7265740 AAAGCCAATGAGCTTCATTAGAGAAAAAACAAGTGGCCAACATGCAACAAAGTATCATACTTAAA
66 AAAGCCAATGAGCTTCATTAGAGAAAAAACAAGTGGCCAACATGCAACAAAGTATCATACTTAAA
7265805 AAAAAAAAACAAAGTAAAAGTCCACCTTCTAAAGACTCTAGCATCTACCTGGAGTTAGAGGTGTG
131 AAAAAAAAACAAAGTAAAAGTCCACCTTCTAAAGACTCTAGCATCTACCTGGAGTTAGAGGTGTG
*
7265870 TATGGGCAGGGTTGGGTCGGGTTCAGGTCGGGTTCAATTAAAATTTTAGGCTCGTTTGCTAGGTT
196 TATGGACAGGGTTGGGTCGGGTTCAGGTCGGGTTCAATTAAAATTTTAGGCTCGTTTGCTAGGTT
7265935 TGGATTCAGCCCTACCTGAAAAATGCGCCTAAAATTTTGCCCAAGTCCAATTCGGATAAAAATGT
261 TGGATTCAGCCCTACCTGAAAAATGCGCCTAAAATTTTGCCCAAGTCCAATTCGGATAAAAATGT
7266000 TAAAATCAGGGCTCGACCCGGCCCTCCAATATTAATTTTTATATTATTTTTATATAATTTTCAAA
326 TAAAATCAGGGCTCGACCCGGCCCTCCAATATTAATTTTTATATTATTTTTATATAATTTT-AAA
7266065 ATTTATTTGAAAT
390 ATTTATTTGAAAT
*
7266078 AATTTAATTTAATTCACTCATGGTTGTATATATTAAATTTTATAATTCAAGTATTTTATTGAAAT
1 AATTTAA-TAAATTCACTCATGGTTGTATATATTAAATTTTATAATTCAAGTATTTTATTGAAAT
7266143 AAAAGCCAATGAGCTTCATTAGAGAAAAAACAAGTGGCCAACATGCAACAAAGTATCATACTTAA
65 AAAAGCCAATGAGCTTCATTAGAGAAAAAACAAGTGGCCAACATGCAACAAAGTATCATACTTAA
7266208 AAAAAAAAAACAAAGTAAAAGTCCACCTTCTAAAGACTCTAGCATCTACCTGGAGTTAGAGGTGT
130 AAAAAAAAAACAAAGTAAAAGTCCACCTTCTAAAGACTCTAGCATCTACCTGGAGTTAGAGGTGT
7266273 GTATGGACAGGGTTGGGTCGGGTTCAGGTCGGGTTCAATTAAAATTTTAGGCTCGTTTGCTAGGT
195 GTATGGACAGGGTTGGGTCGGGTTCAGGTCGGGTTCAATTAAAATTTTAGGCTCGTTTGCTAGGT
*
7266338 TTGGATTCAGCCCTGCCTGAAAAATGCGCCTAAAATTTTGCCCAAGTCCAATTCGGATAAAAATG
260 TTGGATTCAGCCCTACCTGAAAAATGCGCCTAAAATTTTGCCCAAGTCCAATTCGGATAAAAATG
7266403 TTAAAATCAGGGCTCGACCCGGCCCTCCAATATTAATTTTTATATTATTTTTATATAATTTTAAA
325 TTAAAATCAGGGCTCGACCCGGCCCTCCAATATTAATTTTTATATTATTTTTATATAATTTTAAA
7266468 AT
390 AT
7266470 ATATATAATA
Statistics
Matches: 388, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
403 12 0.03
404 376 0.97
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (402 bp):
AATTTAATAAATTCACTCATGGTTGTATATATTAAATTTTATAATTCAAGTATTTTATTGAAATA
AAAGCCAATGAGCTTCATTAGAGAAAAAACAAGTGGCCAACATGCAACAAAGTATCATACTTAAA
AAAAAAAAACAAAGTAAAAGTCCACCTTCTAAAGACTCTAGCATCTACCTGGAGTTAGAGGTGTG
TATGGACAGGGTTGGGTCGGGTTCAGGTCGGGTTCAATTAAAATTTTAGGCTCGTTTGCTAGGTT
TGGATTCAGCCCTACCTGAAAAATGCGCCTAAAATTTTGCCCAAGTCCAATTCGGATAAAAATGT
TAAAATCAGGGCTCGACCCGGCCCTCCAATATTAATTTTTATATTATTTTTATATAATTTTAAAA
TTTATTTGAAAT
Found at i:7266449 original size:12 final size:12
Alignment explanation
Indices: 7266432--7266464 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7266422 CGGCCCTCCA
7266432 ATATTAATTTTT
1 ATATTAATTTTT
7266444 ATATT-ATTTTT
1 ATATTAATTTTT
7266455 ATA-TAATTTT
1 ATATTAATTTT
7266465 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:7266656 original size:22 final size:22
Alignment explanation
Indices: 7266631--7266673 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7266621 TATCCAAATA
7266631 ATAATAACAAAATAGTAACAAC
1 ATAATAACAAAATAGTAACAAC
** *
7266653 ATAATAGTAAAATGGTAACAA
1 ATAATAACAAAATAGTAACAA
7266674 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAACAAC
Found at i:7269773 original size:18 final size:18
Alignment explanation
Indices: 7269686--7269776 Score: 137
Period size: 18 Copynumber: 5.1 Consensus size: 18
7269676 CGTTTACGGC
*
7269686 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGT
*
7269704 ACTATTTACGTATACAGT
1 ACTATTCACGTATACAGT
* *
7269722 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGT
7269740 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGT
*
7269758 ACTGTTCACGTATACAGT
1 ACTATTCACGTATACAGT
7269776 A
1 A
7269777 GTTGGGATTG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACAGT
Found at i:7275106 original size:31 final size:31
Alignment explanation
Indices: 7275071--7275153 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 31
7275061 GGACTTGAAT
7275071 TTAAAATTTAAAAAATAAATGAACTAAATTC
1 TTAAAATTTAAAAAATAAATGAACTAAATTC
* * *
7275102 TTAAAA-AT-AAAAATATATGAATTAAATTC
1 TTAAAATTTAAAAAATAAATGAACTAAATTC
*
7275131 -TAAATTTATAAAAAATATAATGA
1 TTAAAATT-TAAAAAATA-AATGA
7275154 CTTATGGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
28 4 0.10
29 19 0.45
30 2 0.05
31 13 0.31
32 4 0.10
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (31 bp):
TTAAAATTTAAAAAATAAATGAACTAAATTC
Found at i:7276889 original size:31 final size:31
Alignment explanation
Indices: 7276852--7276912 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
7276842 ATGTAATCAC
*
7276852 TGAACTACTT-AAAAGTTTTCATTTAAGTCAT
1 TGAACTA-TTCAAAACTTTTCATTTAAGTCAT
*
7276883 TGAACTATTCAAAACTTTTTATTTAAGTCA
1 TGAACTATTCAAAACTTTTCATTTAAGTCA
7276913 CTAAGTTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (31 bp):
TGAACTATTCAAAACTTTTCATTTAAGTCAT
Found at i:7279985 original size:20 final size:22
Alignment explanation
Indices: 7279960--7280002 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7279950 TTATCAGAAC
7279960 TATTAA-ATA-TAATTCAAATA
1 TATTAACATATTAATTCAAATA
*
7279980 TATTAACTTATTAATTCAAATA
1 TATTAACATATTAATTCAAATA
7280002 T
1 T
7280003 TATAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTAACATATTAATTCAAATA
Found at i:7280945 original size:4 final size:4
Alignment explanation
Indices: 7280936--7280964 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7280926 TGATAATATA
7280936 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
7280965 CCAGAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:7281727 original size:28 final size:29
Alignment explanation
Indices: 7281686--7281754 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 29
7281676 TAATAAACAC
7281686 AAATTATTAATTAAAATTTAAAATTT-TTTAT
1 AAATTATT--TTAAAATTTAAAATTTATTT-T
*
7281717 AAA-TATTTTAAATTTTAAAATTTATTTT
1 AAATTATTTTAAAATTTAAAATTTATTTT
7281745 AAATTATTTT
1 AAATTATTTT
7281755 GTAATTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 19 0.54
29 9 0.26
30 4 0.11
31 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
AAATTATTTTAAAATTTAAAATTTATTTT
Found at i:7285213 original size:100 final size:102
Alignment explanation
Indices: 7284992--7285238 Score: 336
Period size: 105 Copynumber: 2.4 Consensus size: 102
7284982 GAAAAAAAAG
* **
7284992 AAAAAGGAAAAAAAAATTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTTAAAAAA
1 AAAAAGTAAAAAAAAAAATTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTT---AAA
*
7285057 ATATTTTTTTTTCGTGTCAGAATCAGATATCAGTATACGA
63 ATATTTTTTTTTCGTGTCAGAATCAGATATCAGTATACAA
* * *
7285097 AAAAAGTAAAAAAAAAAATTGGGTTCTGGCCTGTCAATGGTCGGCACCCAGTACAATTT-AAA-A
1 AAAAAGTAAAAAAAAAAATTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTTAAAATA
7285160 TTTTTTTTTCGTGTCAGAATCAGATATCAGTATACAA
66 TTTTTTTTTCGTGTCAGAATCAGATATCAGTATACAA
** *
7285197 AAAAAGTAAACCAAAAAAAAATTTTGTGCTGGCCTGTCAATG
1 AAAAAGT-AA--AAAAAAAAATTGGGTGCTGGCCTATCAATG
7285239 ACCAAAAAAA
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 44 0.34
101 5 0.04
103 27 0.21
105 53 0.41
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (102 bp):
AAAAAGTAAAAAAAAAAATTGGGTGCTGGCCTATCAATGGCCGGCACCCAGTACAATTTAAAATA
TTTTTTTTTCGTGTCAGAATCAGATATCAGTATACAA
Found at i:7286758 original size:4 final size:4
Alignment explanation
Indices: 7286749--7286781 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7286739 TAAGCATAAA
7286749 TATT TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT T
7286782 TCAACTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7286867 original size:14 final size:13
Alignment explanation
Indices: 7286850--7286884 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7286840 TTAAAATTTG
*
7286850 TTTTTATATAAAAA
1 TTTTAATAT-AAAA
7286864 TTTTAATATAAAA
1 TTTTAATATAAAA
7286877 TTTTAATA
1 TTTTAATA
7286885 CTGTCAGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTTAATATAAAA
Found at i:7300005 original size:16 final size:16
Alignment explanation
Indices: 7299975--7300007 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7299965 TTTTTTTCCT
7299975 TCTCTTTCTCGTTCTC
1 TCTCTTTCTCGTTCTC
7299991 TCTCTATTCTC-TTCTC
1 TCTCT-TTCTCGTTCTC
7300007 T
1 T
7300008 TTTTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.03, C:0.36, G:0.03, T:0.58
Consensus pattern (16 bp):
TCTCTTTCTCGTTCTC
Found at i:7300222 original size:27 final size:27
Alignment explanation
Indices: 7300192--7300243 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7300182 TGCCGCTTCT
7300192 GCCAGCTCCTCCACCAGTGCCGCCTGC
1 GCCAGCTCCTCCACCAGTGCCGCCTGC
*
7300219 GCCAGCTCCTCCACCAGTGCTGCCT
1 GCCAGCTCCTCCACCAGTGCCGCCT
7300244 CTTCCCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.12, C:0.50, G:0.21, T:0.17
Consensus pattern (27 bp):
GCCAGCTCCTCCACCAGTGCCGCCTGC
Found at i:7301159 original size:15 final size:15
Alignment explanation
Indices: 7301135--7301169 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7301125 TGTTGCAGAA
7301135 CAAA-CCAACCCAAC
1 CAAACCCAACCCAAC
*
7301149 CCAACCCAACCCAAC
1 CAAACCCAACCCAAC
7301164 CAAACC
1 CAAACC
7301170 AAAACAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAACCCAACCCAAC
Found at i:7301172 original size:5 final size:5
Alignment explanation
Indices: 7301139--7301169 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
7301129 GCAGAACAAA
*
7301139 CCAAC CCAAC CCAAC CCAAC CCAAC CAAAC C
1 CCAAC CCAAC CCAAC CCAAC CCAAC CCAAC C
7301170 AAAACAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.42, C:0.58, G:0.00, T:0.00
Consensus pattern (5 bp):
CCAAC
Found at i:7301565 original size:3 final size:3
Alignment explanation
Indices: 7301551--7301594 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
7301541 AAAGAAAACA
* *
7301551 CAG CAA CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG GAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
7301595 AGAAAAGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:7301611 original size:9 final size:8
Alignment explanation
Indices: 7301594--7301627 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
7301584 CAGCAGGAGC
7301594 AAGAAAAG
1 AAGAAAAG
7301602 AAGAAGAAG
1 AAGAA-AAG
7301611 AAGAAAAAG
1 AAG-AAAAG
7301620 AAGAAAAG
1 AAGAAAAG
7301628 TAGTAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAGAAAAG
Found at i:7305700 original size:20 final size:20
Alignment explanation
Indices: 7305676--7305726 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
7305666 TTATTTTTAA
*
7305676 TATTTTTAATTTAAAAT-TT
1 TATTTTTAATATAAAATGTT
7305695 TCA-TTTTAATATAAAATGTT
1 T-ATTTTTAATATAAAATGTT
*
7305715 TATTTTTTATAT
1 TATTTTTAATAT
7305727 CATAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTTTTAATATAAAATGTT
Found at i:7308207 original size:23 final size:23
Alignment explanation
Indices: 7308180--7308318 Score: 108
Period size: 23 Copynumber: 6.1 Consensus size: 23
7308170 GGAACAAGAT
7308180 ATTATCTCCTGAGGGATTAGGAA
1 ATTATCTCCTGAGGGATTAGGAA
7308203 ATTATC-CCTCGAGGGATTAGGAA
1 ATTATCTCCT-GAGGGATTAGGAA
* * *
7308226 ATTATCT-ATGAAGGAATAAGG-A
1 ATTATCTCCTG-AGGGATTAGGAA
* * * *
7308248 ATGA-CCCCTTAAAGGATTAGGAA
1 ATTATCTCC-TGAGGGATTAGGAA
*
7308271 ATGATCTCCTGAGGGATTACGG-A
1 ATTATCTCCTGAGGGATTA-GGAA
* * *
7308294 TTTATCACCCGAGGGATTAGGAA
1 ATTATCTCCTGAGGGATTAGGAA
7308317 AT
1 AT
7308319 GATCCCTTGA
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
21 1 0.01
22 17 0.19
23 66 0.74
24 5 0.06
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (23 bp):
ATTATCTCCTGAGGGATTAGGAA
Found at i:7308333 original size:23 final size:23
Alignment explanation
Indices: 7308193--7308334 Score: 89
Period size: 23 Copynumber: 6.2 Consensus size: 23
7308183 ATCTCCTGAG
* * *
7308193 GGATTAGGAAATTATCCCTCGAG
1 GGATTAGGAAATGATCCCTTGAA
*
7308216 GGATTAGGAAATTAT--CTATGAA
1 GGATTAGGAAATGATCCCT-TGAA
* * *
7308238 GGAATAAGG-AATGACCCCTTAAA
1 GG-ATTAGGAAATGATCCCTTGAA
*
7308261 GGATTAGGAAATGATCTCC-TGAG
1 GGATTAGGAAATGATC-CCTTGAA
* * * *
7308284 GGATTACGG-ATTTATCACC-CGAG
1 GGATTA-GGAAATGATC-CCTTGAA
7308307 GGATTAGGAAATGATCCCTTGAA
1 GGATTAGGAAATGATCCCTTGAA
7308330 GGATT
1 GGATT
7308335 GAAAATATTT
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
21 2 0.02
22 17 0.18
23 67 0.73
24 6 0.07
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (23 bp):
GGATTAGGAAATGATCCCTTGAA
Found at i:7326332 original size:41 final size:38
Alignment explanation
Indices: 7326237--7326335 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 38
7326227 AGCAATAAAG
7326237 TGACACCCAGTGTCTCATCG-ACCAAGCCGAAGTAAGT
1 TGACACCCAGTGTCTCATCGAACCAAGCCGAAGTAAGT
** ** * * *
7326274 TGGTACCCAGTACCTCATCGAATCTATCCGAAGTAACAGT
1 TGACACCCAGTGTCTCATCGAACCAAGCCGAAGT-A-AGT
7326314 ATGACACCCAGTGTCTCATCGA
1 -TGACACCCAGTGTCTCATCGA
7326336 CTCAAGGTCG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 16 0.34
38 10 0.21
39 1 0.02
40 3 0.06
41 17 0.36
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (38 bp):
TGACACCCAGTGTCTCATCGAACCAAGCCGAAGTAAGT
Found at i:7326637 original size:27 final size:27
Alignment explanation
Indices: 7326606--7326659 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7326596 TCACACATAA
*
7326606 TCATA-ATTTAATTCACTTTTATTCAAT
1 TCATATATTTAATTCA-TTTAATTCAAT
*
7326633 TCATATTTTTAATTCATTTAATTCAAT
1 TCATATATTTAATTCATTTAATTCAAT
7326660 ATCGATATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (27 bp):
TCATATATTTAATTCATTTAATTCAAT
Found at i:7326644 original size:28 final size:29
Alignment explanation
Indices: 7326612--7326668 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
7326602 ATAATCATAA
*
7326612 TTTAATTCACTTTTATTCAAT-TC-ATATT
1 TTTAATTCA-TTTAATTCAATATCGATATT
7326640 TTTAATTCATTTAATTCAATATCGATATT
1 TTTAATTCATTTAATTCAATATCGATATT
7326669 CACCTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
28 11 0.42
29 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (29 bp):
TTTAATTCATTTAATTCAATATCGATATT
Found at i:7327499 original size:2 final size:2
Alignment explanation
Indices: 7327492--7327551 Score: 55
Period size: 2 Copynumber: 34.0 Consensus size: 2
7327482 TTTCTTTTGT
*
7327492 TA TA TA TA TA TA TA TA TA TA TA TA -A AA TA TA -A TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7327531 TA T- TA -A TA -A TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7327552 AAAACATAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
1 8 0.16
2 41 0.84
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:7327505 original size:8 final size:8
Alignment explanation
Indices: 7327492--7327551 Score: 55
Period size: 7 Copynumber: 8.5 Consensus size: 8
7327482 TTTCTTTTGT
7327492 TATATATA
1 TATATATA
7327500 TATATATA
1 TATATATA
7327508 TATATATA
1 TATATATA
*
7327516 -AAATATA
1 TATATATA
7327523 -ATATA-A
1 TATATATA
7327529 TATAT-TA
1 TATATATA
7327536 -ATA-ATA
1 TATATATA
7327542 -ATATA-A
1 TATATATA
7327548 TATA
1 TATA
7327552 AAAACATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
6 10 0.22
7 19 0.42
8 16 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
TATATATA
Found at i:7327531 original size:19 final size:19
Alignment explanation
Indices: 7327497--7327592 Score: 74
Period size: 19 Copynumber: 4.9 Consensus size: 19
7327487 TTTGTTATAT
7327497 ATATATATATATATATATAAA
1 ATATA-ATATA-ATATATAAA
*
7327518 ATATAATATAATATAT-TA
1 ATATAATATAATATATAAA
7327536 ATAATAATATAATATA-AAA
1 AT-ATAATATAATATATAAA
* *
7327555 ACATAATCATTAAT-TACGT-AT
1 ATATAAT-A-TAATATA--TAAA
7327576 ATATAATATAATATATA
1 ATATAATATAATATATA
7327593 TTTTAAACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
18 9 0.15
19 28 0.46
20 12 0.20
21 12 0.20
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (19 bp):
ATATAATATAATATATAAA
Found at i:7327561 original size:24 final size:23
Alignment explanation
Indices: 7327513--7327561 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
7327503 ATATATATAT
* *
7327513 ATAAAATATAATATAATATATTA
1 ATAAAATATAATATAATAAAATA
7327536 ATAATAATATAATATAA-AAACATA
1 ATAA-AATATAATATAATAAA-ATA
7327560 AT
1 AT
7327562 CATTAATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
ATAAAATATAATATAATAAAATA
Found at i:7327590 original size:14 final size:14
Alignment explanation
Indices: 7327492--7327593 Score: 69
Period size: 14 Copynumber: 7.5 Consensus size: 14
7327482 TTTCTTTTGT
7327492 TATATAT-ATAT-A
1 TATATATAATATAA
7327504 TATATAT-ATATAA
1 TATATATAATATAA
7327517 -A-ATATAATATAA
1 TATATATAATATAA
7327529 TATAT-TAATAATAA
1 TATATATAAT-ATAA
7327543 TATAATATAA-A-AA
1 TAT-ATATAATATAA
* *
7327556 CATAATCATTAAT-TACG
1 TAT-AT-A-TAATATA-A
7327573 TATATATAATATAA
1 TATATATAATATAA
7327587 TATATAT
1 TATATAT
7327594 TTTAAACTAA
Statistics
Matches: 73, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
11 4 0.05
12 18 0.25
13 13 0.18
14 22 0.30
15 8 0.11
16 6 0.08
17 2 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (14 bp):
TATATATAATATAA
Found at i:7328852 original size:94 final size:94
Alignment explanation
Indices: 7328749--7328938 Score: 371
Period size: 94 Copynumber: 2.0 Consensus size: 94
7328739 CACCAGTTAA
7328749 AATATTGTGCACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTGCACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
7328814 TAAAATAAAAAATTAATAAATAATAAAAG
66 TAAAATAAAAAATTAATAAATAATAAAAG
*
7328843 AATATTGTGCACCAACTAGTACATTATTTAAAGTTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTGCACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
7328908 TAAAATAAAAAATTAATAAATAATAAAAG
66 TAAAATAAAAAATTAATAAATAATAAAAG
7328937 AA
1 AA
7328939 GTGTTGGGTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (94 bp):
AATATTGTGCACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
TAAAATAAAAAATTAATAAATAATAAAAG
Found at i:7329044 original size:21 final size:20
Alignment explanation
Indices: 7329019--7329059 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
7329009 AACTTAATTT
7329019 TATATTT-TAAATTATATAAAA
1 TATATTTAT-AATT-TATAAAA
7329040 TATATTTATAATTTATAAAA
1 TATATTTATAATTTATAAAA
7329060 CAAATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 11 0.58
22 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATATTTATAATTTATAAAA
Found at i:7329066 original size:22 final size:21
Alignment explanation
Indices: 7329020--7329066 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
7329010 ACTTAATTTT
*
7329020 ATATTTTAAATTATATAAAAT
1 ATATTTTAAATTATATAAAAA
*
7329041 ATATTTATAATTTATA-AAACAA
1 ATATTT-TAAATTATATAAA-AA
7329063 ATAT
1 ATAT
7329067 AAATTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTTTAAATTATATAAAAA
Found at i:7329577 original size:20 final size:21
Alignment explanation
Indices: 7329552--7329602 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
7329542 ATTAATTATT
*
7329552 TATAAAATT-TAATTTGAATA
1 TATAAAATTATAATTTAAATA
*
7329572 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
7329592 T-TAAAA-TATAA
1 TATAAAATTATAA
7329603 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:7338503 original size:30 final size:30
Alignment explanation
Indices: 7338469--7338526 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7338459 TGGTAGCTTA
7338469 AATAAAAACTTTTGAATAGTTTAATGACTT
1 AATAAAAACTTTTGAATAGTTTAATGACTT
*** *
7338499 AATAAATTTTTTTGAATAGTTTAGTGAC
1 AATAAAAACTTTTGAATAGTTTAATGAC
7338527 CATTTCTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (30 bp):
AATAAAAACTTTTGAATAGTTTAATGACTT
Found at i:7347219 original size:31 final size:30
Alignment explanation
Indices: 7347177--7347235 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
7347167 ACAAATTTAG
*
7347177 AATTTAGTCTTTATACTTTTG-TTTCAAGT
1 AATTTAGTCTTTATACTTTAGATTTCAAGT
*
7347206 AATTTAGTCTCTTTATTCTTTAGATTTCAA
1 AATTTAG--TCTTTATACTTTAGATTTCAA
7347236 AATTAAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
31 12 0.48
32 6 0.24
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (30 bp):
AATTTAGTCTTTATACTTTAGATTTCAAGT
Found at i:7354686 original size:19 final size:19
Alignment explanation
Indices: 7354638--7354694 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
7354628 AAAAATATAT
*
7354638 AATATATATAAAAAGTAAA
1 AATATATATAAAAATTAAA
7354657 AATAGTATATAAAAATTGAAA
1 AATA-TATATAAAAATT-AAA
7354678 AATAT-TATAAAAATTAA
1 AATATATATAAAAATTAA
7354695 TATATATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 2 0.06
19 14 0.40
20 12 0.34
21 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AATATATATAAAAATTAAA
Found at i:7357689 original size:26 final size:26
Alignment explanation
Indices: 7357659--7357710 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7357649 CTTAGTTTTA
*
7357659 GCCTTTGTTTTCTCTAGGTTTTCTCT
1 GCCTTAGTTTTCTCTAGGTTTTCTCT
7357685 GCCTTAGTTTTCTCTAGGTTTTCTCT
1 GCCTTAGTTTTCTCTAGGTTTTCTCT
7357711 TAGTCTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.06, C:0.23, G:0.15, T:0.56
Consensus pattern (26 bp):
GCCTTAGTTTTCTCTAGGTTTTCTCT
Found at i:7359796 original size:16 final size:16
Alignment explanation
Indices: 7359775--7359843 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
7359765 TTTGGTTCGC
7359775 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7359791 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
7359807 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
7359824 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7359840 TGTA
1 TGTA
7359844 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7359821 original size:33 final size:32
Alignment explanation
Indices: 7359775--7359843 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
7359765 TTTGGTTCGC
7359775 TGTATTGGATTAGAGGTGTATTGGATTAAAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAAAGG
*
7359807 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAAAGG
7359840 TGTA
1 TGTA
7359844 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAAAGG
Found at i:7359908 original size:44 final size:45
Alignment explanation
Indices: 7359824--7359914 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
7359814 GGATTAGAGG
* * *
7359824 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
7359869 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
7359913 TG
1 TG
7359915 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:7360100 original size:18 final size:19
Alignment explanation
Indices: 7360079--7360115 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7360069 TTATTATTAA
7360079 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
7360097 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
7360116 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:7360223 original size:59 final size:58
Alignment explanation
Indices: 7360157--7360342 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
7360147 CTCAAATCAT
* *
7360157 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
7360216 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
7360276 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
7360336 AATATAT
1 AATATAT
7360343 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:7360280 original size:120 final size:120
Alignment explanation
Indices: 7360059--7360348 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
7360049 TTAATCATAT
7360059 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
7360124 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
7360181 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
7360245 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
7360301 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
7360349 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:7385183 original size:20 final size:21
Alignment explanation
Indices: 7385136--7385183 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7385126 CCCTTATTTG
*
7385136 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
7385156 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
7385175 TTATTATTA
1 TTATTATTA
7385184 CTATTATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:7385190 original size:12 final size:12
Alignment explanation
Indices: 7385173--7385206 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7385163 AGTTATTTAA
7385173 TATTATTATTAC
1 TATTATTATTAC
*
7385185 TATTATTACTAC
1 TATTATTATTAC
7385197 TATTATTATT
1 TATTATTATT
7385207 GTTATCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7390602 original size:44 final size:46
Alignment explanation
Indices: 7390535--7390656 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 46
7390525 CATACTGGTG
* *
7390535 GCGAAGTAGATCGAAGAAAGCAGATTTTATCTTCATGTA-TTAGC-
1 GCGAAGTAGATCGAAGATAGCAGATTTTACCTTCATGTATTTAGCA
* * * * * *
7390579 GTGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
1 GCGAAGTAGATCGAAGATAGCAGATTTTACCTTCATGTATTTAGCA
* * *
7390625 GCGAAGCAGATCAAAGATGGCAGATTTTACCT
1 GCGAAGTAGATCGAAGATAGCAGATTTTACCT
7390657 CCCTGACCAC
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 32 0.52
45 4 0.06
46 26 0.42
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (46 bp):
GCGAAGTAGATCGAAGATAGCAGATTTTACCTTCATGTATTTAGCA
Found at i:7390744 original size:134 final size:134
Alignment explanation
Indices: 7390585--7390969 Score: 653
Period size: 134 Copynumber: 2.9 Consensus size: 134
7390575 TAGCGTGAAG
*
7390585 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
7390650 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
7390715 GGAA
131 GGAA
*
7390719 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGTAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
7390784 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
7390849 GGAA
131 GGAA
* * ** * *
7390853 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGGTTGAAGACGGCGGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
** * **
7390918 TTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCTCCC
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
7390970 GGGGCAAGAA
Statistics
Matches: 237, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
134 237 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
GGAA
Found at i:7390759 original size:46 final size:46
Alignment explanation
Indices: 7390697--7390893 Score: 145
Period size: 46 Copynumber: 4.4 Consensus size: 46
7390687 ATAACTCTAT
*
7390697 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * * *
7390743 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGTAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
7390789 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
7390831 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
*
7390877 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
7390894 CAAAGCAGGT
Statistics
Matches: 106, Mismatches: 37, Indels: 16
0.67 0.23 0.10
Matches are distributed among these distances:
41 3 0.03
42 10 0.09
43 10 0.09
44 2 0.02
45 20 0.19
46 57 0.54
47 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:7391033 original size:44 final size:44
Alignment explanation
Indices: 7390977--7391666 Score: 633
Period size: 44 Copynumber: 15.7 Consensus size: 44
7390967 CCCGGGGCAA
* * *
7390977 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * *
7391021 GAAATGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * *
7391064 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CG
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * *
7391108 TGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGT--
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATT-G-GTAG
* * *
7391153 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * *
7391197 GAAATGGATCGAAGAT-GCAGATATTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * *
7391240 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CG
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * *
7391284 TGAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * *
7391329 GAAATGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * * * *
7391372 CGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCAT
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * *
7391417 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * *
7391461 GAAGTGGATCAAAGATAACAGATCTTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * * *
7391505 CGAAGTAGATCGCAGAAAGCAGATCTTGTTTTCATGTATTGG-CG
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * **
7391549 TGAAGTAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAG
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
* * * * *
7391594 GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATACTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
*
7391637 TGAAGTAGATCGAAGAAAGCAGATCTTGTC
1 -GAAGTAGATCGAAGATAGCAGATCTTGTC
7391667 CCTGTATTTG
Statistics
Matches: 512, Mismatches: 118, Indels: 31
0.77 0.18 0.05
Matches are distributed among these distances:
42 2 0.00
43 86 0.17
44 315 0.62
45 108 0.21
46 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
Found at i:7391245 original size:132 final size:132
Alignment explanation
Indices: 7390977--7391666 Score: 936
Period size: 132 Copynumber: 5.2 Consensus size: 132
7390967 CCCGGGGCAA
* * * * * * * * *
7390977 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAATGGATCGAAGAT-GCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA
* * * * * * ***
7391040 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
65 GATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTG
* *
7391105 G-CGT
128 GTGGC
* *
7391109 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCGAAGATAGCTG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* *
7391174 ATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGATATTGTCTTCCCATATTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
7391239 GC
131 GC
*
7391241 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCTG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* *
7391306 ATCCTATCTTCCTATATTGGTAGGAAATGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
7391371 GC
131 GC
* * * *
7391373 GAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGGTAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* *
7391438 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATAACAGATCTTGTCTTCCCATATTGGT
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGT
7391503 GGC
130 GGC
* * * *
7391506 GAAGTAGATCGCAGAAAGCAGATCTTGTTTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
* ** * *
7391571 GTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTG
66 ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
*
7391636 GT
131 GC
7391638 GAAGTAGATCGAAGAAAGCAGATCTTGTC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTC
7391667 CCTGTATTTG
Statistics
Matches: 504, Mismatches: 50, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
131 22 0.04
132 340 0.67
133 142 0.28
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
ATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTG
GC
Found at i:7393375 original size:20 final size:21
Alignment explanation
Indices: 7393328--7393375 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7393318 CCCTTATTTG
*
7393328 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
7393348 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
7393367 TTATTATTA
1 TTATTATTA
7393376 CTATTATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:7393382 original size:12 final size:12
Alignment explanation
Indices: 7393365--7393398 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7393355 AGTTATTTAA
7393365 TATTATTATTAC
1 TATTATTATTAC
*
7393377 TATTATTACTAC
1 TATTATTATTAC
7393389 TATTATTATT
1 TATTATTATT
7393399 GTTATCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7399851 original size:16 final size:17
Alignment explanation
Indices: 7399827--7399903 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 17
7399817 CCTTTACAAT
*
7399827 TGTGTGAGCT-TATATG
1 TGTGCGAGCTCTATATG
*
7399843 TGTGCGAGCTCTGTAT-
1 TGTGCGAGCTCTATATG
* *
7399859 TATGCGAGC-CTATATACA
1 TGTGCGAGCTCTATAT--G
*
7399877 TGTGCGAGCTCTATGTTG
1 TGTGCGAGCTCTAT-ATG
7399895 TGTGCGAGC
1 TGTGCGAGC
7399904 CATATACTGA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
15 5 0.10
16 17 0.35
17 4 0.08
18 17 0.35
19 4 0.08
20 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.30, T:0.35
Consensus pattern (17 bp):
TGTGCGAGCTCTATATG
Found at i:7399886 original size:50 final size:52
Alignment explanation
Indices: 7399806--7399903 Score: 123
Period size: 50 Copynumber: 1.9 Consensus size: 52
7399796 CCCTGTCGCA
*
7399806 TATTATGCGAACCTTTACAATTGTGTGAGCT-TAT-ATGTGTGCGAGCTCTG
1 TATTATGCGAACCTTTACAATTGTGCGAGCTCTATGATGTGTGCGAGCTCTG
* *
7399856 TATTATGCGAGCCTATATAC-A-TGTGCGAGCTCTATGTTGTGTGCGAGC
1 TATTATGCGAACCT-T-TACAATTGTGCGAGCTCTATGATGTGTGCGAGC
7399904 CATATACTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
50 22 0.54
51 5 0.12
52 14 0.34
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (52 bp):
TATTATGCGAACCTTTACAATTGTGCGAGCTCTATGATGTGTGCGAGCTCTG
Found at i:7403112 original size:14 final size:14
Alignment explanation
Indices: 7403093--7403128 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
7403083 AAGGAAAAAA
7403093 ACGCGCTTACGTGG
1 ACGCGCTTACGTGG
7403107 ACGCGCTTACGTGG
1 ACGCGCTTACGTGG
7403121 ACGCGCTT
1 ACGCGCTT
7403129 TAGTAAAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.14, C:0.31, G:0.33, T:0.22
Consensus pattern (14 bp):
ACGCGCTTACGTGG
Found at i:7409823 original size:2 final size:2
Alignment explanation
Indices: 7409816--7409844 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7409806 GTCTTAGGCA
7409816 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7409845 TATGAGTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7414956 original size:21 final size:20
Alignment explanation
Indices: 7414931--7414987 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
7414921 AAAAAATATA
7414931 AAAAAATTATATAAAATTAT
1 AAAAAATTATATAAAATTAT
**
7414951 GTAAAATT-TATTAATAATTAT
1 AAAAAATTATA-TAA-AATTAT
*
7414972 AAAAAATTATAGAAAA
1 AAAAAATTATATAAAA
7414988 AATTATTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.07
20 11 0.38
21 14 0.48
22 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
AAAAAATTATATAAAATTAT
Found at i:7414961 original size:11 final size:10
Alignment explanation
Indices: 7414933--7414987 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
7414923 AAAATATAAA
7414933 AAAATTATAT
1 AAAATTATAT
*
7414943 AAAATTATGT
1 AAAATTATAT
7414953 AAAATT-TATT
1 AAAATTATA-T
*
7414963 AATAATTATAA
1 AA-AATTATAT
*
7414974 AAAATTATAG
1 AAAATTATAT
7414984 AAAA
1 AAAA
7414988 AATTATTTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 1 0.03
10 29 0.76
11 6 0.16
12 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (10 bp):
AAAATTATAT
Found at i:7415001 original size:51 final size:50
Alignment explanation
Indices: 7414914--7415011 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 50
7414904 ATTTTTTAGG
* *
7414914 TAATTTTAAAAAATATAAAAAAATTATATAAAATTATGTAAAATTTATTAA
1 TAATTATAAAAAATATAAAAAAATTATATAAAATTAT-AAAAATTTATTAA
**
7414965 TAATTATAAAAAATTATAGAAAAAATTAT-T-TGATTATAAAAATTTAT
1 TAATTATAAAAAA-TATA-AAAAAATTATATAAAATTATAAAAATTTAT
7415012 AGAAAAATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
50 9 0.22
51 17 0.41
52 5 0.12
53 10 0.24
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (50 bp):
TAATTATAAAAAATATAAAAAAATTATATAAAATTATAAAAATTTATTAA
Found at i:7415003 original size:30 final size:31
Alignment explanation
Indices: 7414935--7415018 Score: 100
Period size: 30 Copynumber: 2.7 Consensus size: 31
7414925 AATATAAAAA
* * *
7414935 AATTATATAAAATTAT-GTAAAATTTATTAAT
1 AATTATAAAAAATTATAGAAAAAATTATT-AT
7414966 AATTATAAAAAATTATAGAAAAAATTATT-T
1 AATTATAAAAAATTATAGAAAAAATTATTAT
* *
7414996 GATTATAAAAATTTATAGAAAAA
1 AATTATAAAAAATTATAGAAAAA
7415019 TGTTTTCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
30 22 0.47
31 15 0.32
32 10 0.21
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (31 bp):
AATTATAAAAAATTATAGAAAAAATTATTAT
Found at i:7418480 original size:17 final size:17
Alignment explanation
Indices: 7418458--7418495 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7418448 TTATATTTTC
* *
7418458 TAAAAATTATTTTTAAA
1 TAAAAACTAATTTTAAA
7418475 TAAAAACTAATTTTAAA
1 TAAAAACTAATTTTAAA
7418492 -AAAA
1 TAAAA
7418496 TTAAATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAAACTAATTTTAAA
Found at i:7420012 original size:18 final size:18
Alignment explanation
Indices: 7419975--7420013 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7419965 AATGCATGGA
** *
7419975 TATTATGTATATTTACTT
1 TATTATGTATATACAATT
7419993 TATTATGTATATACAATT
1 TATTATGTATATACAATT
7420011 TAT
1 TAT
7420014 ATGCAATGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (18 bp):
TATTATGTATATACAATT
Found at i:7421310 original size:28 final size:26
Alignment explanation
Indices: 7421255--7421340 Score: 84
Period size: 29 Copynumber: 3.1 Consensus size: 26
7421245 AATATTCTTA
7421255 AAAAT-AAAAAATATTAAAAATATGATAG
1 AAAATAAAAAAAT-TTAAAAAT-T-ATAG
* *
7421283 AAATTCAAAAAATTGGTAAAAATTATAG
1 AAAATAAAAAAATT--TAAAAATTATAG
7421311 AAAAATAAAAAAATTTATAAAATTATAG
1 -AAAATAAAAAAATTTA-AAAATTATAG
7421339 AA
1 AA
7421341 GAACTATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 4 0.08
28 19 0.38
29 20 0.40
30 7 0.14
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAATAAAAAAATTTAAAAATTATAG
Found at i:7432858 original size:21 final size:23
Alignment explanation
Indices: 7432832--7432877 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
7432822 TCTATTTAAT
7432832 TATTTTAA-TTATTTAA-TTATA
1 TATTTTAATTTATTTAATTTATA
7432853 TATTTTAATTTATTTAATTTATA
1 TATTTTAATTTATTTAATTTATA
7432876 TA
1 TA
7432878 AGTAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 7 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTTTAATTTATTTAATTTATA
Found at i:7432886 original size:21 final size:21
Alignment explanation
Indices: 7432837--7432888 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
7432827 TTAATTATTT
**
7432837 TAATTATTTAATTATATATTT
1 TAATTATTTAATTATATATAG
7432858 TAATTTATTTAATT-TATATAAG
1 TAA-TTATTTAATTATATAT-AG
7432880 TAATTATTT
1 TAATTATTT
7432889 CATAAATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TAATTATTTAATTATATATAG
Found at i:7435668 original size:48 final size:48
Alignment explanation
Indices: 7435616--7435773 Score: 226
Period size: 48 Copynumber: 3.3 Consensus size: 48
7435606 TGATTTGTAC
* * * *
7435616 AAAAATAGATAGCATTTAAGCACCAATTTGGACAACATTAATATACTA
1 AAAAATAGACAGCAATTAAGCATCAATTTGGACAGCATTAATATACTA
* * *
7435664 AAAAATGGGCAGCAATTAAGCATCAATTTGGACAGCATTAATATACTC
1 AAAAATAGACAGCAATTAAGCATCAATTTGGACAGCATTAATATACTA
* *
7435712 AAAAATAGACAGCAATTAACCATCAATTTGGACAGCATTAATATGCTA
1 AAAAATAGACAGCAATTAAGCATCAATTTGGACAGCATTAATATACTA
*
7435760 AAAAATGGACAGCA
1 AAAAATAGACAGCA
7435774 TCTTATCATT
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 97 1.00
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (48 bp):
AAAAATAGACAGCAATTAAGCATCAATTTGGACAGCATTAATATACTA
Found at i:7435704 original size:22 final size:23
Alignment explanation
Indices: 7435673--7435752 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 23
7435663 AAAAAATGGG
*
7435673 CAGCAATTAAGCATCAATTTGGA
1 CAGCAATTAAACATCAATTTGGA
* ** *
7435696 CAGC-ATTAATATACTCAAAAATAGA
1 CAGCAATTAA-ACA-TC-AATTTGGA
*
7435721 CAGCAATTAACCATCAATTTGGA
1 CAGCAATTAAACATCAATTTGGA
7435744 CAGC-ATTAA
1 CAGCAATTAA
7435753 TATGCTAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
22 10 0.23
23 14 0.33
24 4 0.09
25 10 0.23
26 5 0.12
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (23 bp):
CAGCAATTAAACATCAATTTGGA
Found at i:7436433 original size:42 final size:43
Alignment explanation
Indices: 7436315--7436434 Score: 145
Period size: 42 Copynumber: 2.8 Consensus size: 43
7436305 AGCTCGTATA
* * * ** *
7436315 ATGCC-ATATCTCAGATATGGTGTTACATGTTATAATATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
* *
7436357 ATGCCACTATCCCAGACAGGGTCTTACATGAAATCATATA-CG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
*
7436399 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCA
7436435 CACCTCGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 40 0.61
43 26 0.39
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
Found at i:7440590 original size:18 final size:18
Alignment explanation
Indices: 7440557--7440609 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
7440547 ATTCACCTAA
*
7440557 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
7440576 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
7440594 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
7440610 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:7440721 original size:9 final size:9
Alignment explanation
Indices: 7440707--7440782 Score: 82
Period size: 9 Copynumber: 8.4 Consensus size: 9
7440697 GTAGTGATTC
7440707 AATTCGGTT
1 AATTCGGTT
*
7440716 AATTCGGGT
1 AATTCGGTT
7440725 AATTCAGG-T
1 AATTC-GGTT
**
7440734 AATTCAATT
1 AATTCGGTT
*
7440743 AATTCGGGT
1 AATTCGGTT
*
7440752 AATTCAGTT
1 AATTCGGTT
*
7440761 AATTCAGTT
1 AATTCGGTT
7440770 AATTCGGTT
1 AATTCGGTT
7440779 AATT
1 AATT
7440783 TTTAACCAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
9 54 0.96
10 2 0.04
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7440744 original size:27 final size:27
Alignment explanation
Indices: 7440714--7440782 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
7440704 TTCAATTCGG
7440714 TTAATTCGGGTAATTCAGGTAATTCAA
1 TTAATTCGGGTAATTCAGGTAATTCAA
* *
7440741 TTAATTCGGGTAATTCAGTTAATTCAG
1 TTAATTCGGGTAATTCAGGTAATTCAA
*
7440768 TTAATTCGGTTAATT
1 TTAATTCGGGTAATT
7440783 TTTAACCAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (27 bp):
TTAATTCGGGTAATTCAGGTAATTCAA
Found at i:7446208 original size:13 final size:13
Alignment explanation
Indices: 7446192--7446231 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
7446182 TTTAAACCAA
7446192 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
7446205 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
7446218 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
7446231 A
1 A
7446232 ATGAAGAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7446641 original size:26 final size:25
Alignment explanation
Indices: 7446592--7446663 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
7446582 GCGTTGCATG
** *
7446592 TAATTTTAAGTATTTAATTTTTAAT
1 TAATTTTAAAAATTTAAATTTTAAT
7446617 TAATTTTAAAAATATTAAATTTTAAT
1 TAATTTTAAAAAT-TTAAATTTTAAT
* *
7446643 TAATTTATTAAAATTTTAATT
1 TAATTT-TAAAAATTTAAATT
7446664 CATTATTTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
25 11 0.28
26 23 0.57
27 6 0.15
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (25 bp):
TAATTTTAAAAATTTAAATTTTAAT
Done.