Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 25 of 199
Found at i:8078301 original size:57 final size:57
Alignment explanation
Indices: 8078178--8078316 Score: 140
Period size: 57 Copynumber: 2.4 Consensus size: 57
8078168 ACTATGTTTC
* ** *
8078178 TTTTCGTTTTTCGTCATCCAACTATGAAAGTTACAAAATAGTCACTCAATTATTAGTAA
1 TTTT-GTTTTTCGTCACCCAACTATGAAAGTTACAAAATAACCACTCAACTATTA-TAA
* * * *
8078237 -ATT-TTTTTGGTCACCCAACTATGAAAAGTTATAAAATAACCACTCAACTCTT-TAA
1 TTTTGTTTTTCGTCACCCAACTATG-AAAGTTACAAAATAACCACTCAACTATTATAA
*
8078292 TTTTGTTTTTTTGTCACCCAACTAT
1 TTTTG-TTTTTCGTCACCCAACTAT
8078317 TTTAGATTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
55 3 0.05
56 20 0.30
57 23 0.35
58 20 0.30
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (57 bp):
TTTTGTTTTTCGTCACCCAACTATGAAAGTTACAAAATAACCACTCAACTATTATAA
Found at i:8084651 original size:3 final size:3
Alignment explanation
Indices: 8084645--8084673 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8084635 AGAGAAAGAA
8084645 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
8084674 ACTTTACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:8093870 original size:6 final size:6
Alignment explanation
Indices: 8093859--8093883 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8093849 TTTTATTGAT
8093859 TAAATA TAAATA TAAATA TAAATA T
1 TAAATA TAAATA TAAATA TAAATA T
8093884 TGTTATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAATA
Found at i:8094801 original size:43 final size:43
Alignment explanation
Indices: 8094753--8094960 Score: 312
Period size: 43 Copynumber: 4.8 Consensus size: 43
8094743 TTTTTAAAAG
*
8094753 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTATACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTACACAAA
*
8094796 CGCCGCTAAAGAACATGTTCTCTAGCGGCGCTTTTTACACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTACACAAA
* *
8094839 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTCTAACACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTACACAAA
* * *
8094882 CGCCGCTAAAGCTA-ATGTTCTTTAGCGGCGCTTCTAACACAAA
1 CGCCGCTAAAG-AACATGTTCTTTAGCGGCGCTTTTTACACAAA
*
8094925 CGCCGCTAAAGCTA-ATGTTCTTTAGCGGCGCTTTTT
1 CGCCGCTAAAG-AACATGTTCTTTAGCGGCGCTTTTT
8094961 TAAAAAACGC
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
43 155 0.99
44 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTTTACACAAA
Found at i:8094969 original size:43 final size:42
Alignment explanation
Indices: 8094743--8094976 Score: 271
Period size: 43 Copynumber: 5.5 Consensus size: 42
8094733 GCGGCGTTTA
*
8094743 TTTTT-AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGC
1 TTTTTAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
* *
8094784 TTTTTATACAAACGCCGCTAAAGAACATGTTCTCTAGCGGCGC
1 TTTTTA-AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
*
8094827 TTTTTACACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
1 TTTTTA-AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
* *
8094870 -TTCTAACACAAACGCCGCTAAAGCTA-ATGTTCTTTAGCGGCGC
1 TTTTTAA-A-AAACGCCGCTAAAG-AACATGTTCTTTAGCGGCGC
* *
8094913 -TTCTAACACAAACGCCGCTAAAGCTA-ATGTTCTTTAGCGGCGC
1 TTTTTAA-A-AAACGCCGCTAAAG-AACATGTTCTTTAGCGGCGC
*
8094956 TTTTTTAAAAAACGCCACTAA
1 -TTTTTAAAAAACGCCGCTAA
8094977 TTTTGGGGTT
Statistics
Matches: 176, Mismatches: 10, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 159 0.90
44 2 0.01
45 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
TTTTTAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
Found at i:8095354 original size:66 final size:66
Alignment explanation
Indices: 8095277--8095412 Score: 227
Period size: 66 Copynumber: 2.1 Consensus size: 66
8095267 CTCGCTGCAG
* * *
8095277 CCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAGTTCTTCATATTTCTTTTGA
1 CCTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGA
8095342 A
66 A
* *
8095343 CCTCTGCTTCTCTCGCTGCCGCATCTGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGA
1 CCTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGA
8095408 A
66 A
8095409 CCTC
1 CCTC
8095413 AACTGTGGTC
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.40
Consensus pattern (66 bp):
CCTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGA
A
Found at i:8097311 original size:16 final size:16
Alignment explanation
Indices: 8097287--8097318 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8097277 TTTGAGTAAA
*
8097287 AATTTTGTAAATTATG
1 AATTATGTAAATTATG
8097303 AATTATGTAAATTATG
1 AATTATGTAAATTATG
8097319 TAAAATACGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (16 bp):
AATTATGTAAATTATG
Found at i:8097315 original size:9 final size:9
Alignment explanation
Indices: 8097286--8097341 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
8097276 TTTTGAGTAA
*
8097286 AAATTTTGT
1 AAATTATGT
8097295 AAATTATG-
1 AAATTATGT
8097303 -AATTATGT
1 AAATTATGT
8097311 AAATTATGT
1 AAATTATGT
* *
8097320 AAAATACGT
1 AAATTATGT
*
8097329 AAGTTATG-
1 AAATTATGT
8097337 AAATT
1 AAATT
8097342 TGAACTTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
7 7 0.18
8 4 0.11
9 27 0.71
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.41
Consensus pattern (9 bp):
AAATTATGT
Found at i:8097511 original size:29 final size:29
Alignment explanation
Indices: 8097470--8097527 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
8097460 CAAAATATAT
8097470 TTTTGGAAATGAAATAGTTGACAAATGGA
1 TTTTGGAAATGAAATAGTTGACAAATGGA
8097499 TTTTGGAAATGAAATAGTTGACAAATGGA
1 TTTTGGAAATGAAATAGTTGACAAATGGA
8097528 AGAAGATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (29 bp):
TTTTGGAAATGAAATAGTTGACAAATGGA
Found at i:8101671 original size:22 final size:21
Alignment explanation
Indices: 8101632--8101672 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
8101622 ACTCTGACTA
8101632 TAAAAACTAAACTCCAAACTT
1 TAAAAACTAAACTCCAAACTT
8101653 TAAAACACTAAA-TCACAAAC
1 TAAAA-ACTAAACTC-CAAAC
8101673 CCAATATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAAAACTAAACTCCAAACTT
Found at i:8101717 original size:16 final size:16
Alignment explanation
Indices: 8101696--8101765 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
8101686 CCCTAAACCA
8101696 TAAACTATAAAACCCT
1 TAAACTATAAAACCCT
* * **
8101712 TAAACTA-CATACTAT
1 TAAACTATAAAACCCT
*
8101727 AGTAAAC-ATTAAA-CCT
1 --TAAACTATAAAACCCT
8101743 TAAACTATAAAACCCT
1 TAAACTATAAAACCCT
8101759 TAAACTA
1 TAAACTA
8101766 CATACTATAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 5 0.12
15 9 0.22
16 19 0.47
17 7 0.17
ACGTcount: A:0.50, C:0.21, G:0.01, T:0.27
Consensus pattern (16 bp):
TAAACTATAAAACCCT
Found at i:8101725 original size:23 final size:23
Alignment explanation
Indices: 8101699--8101774 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
8101689 TAAACCATAA
8101699 ACTATAAAACCCTTAAACTACAT
1 ACTATAAAACCCTTAAACTACAT
*
8101722 ACTATAGTAAA-CATTAAACCTTA-A-
1 ACTATA--AAACCCTTAAA-C-TACAT
8101746 ACTATAAAACCCTTAAACTACAT
1 ACTATAAAACCCTTAAACTACAT
8101769 ACTATA
1 ACTATA
8101775 GCCCTTAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
21 2 0.05
22 5 0.11
23 18 0.41
24 12 0.27
25 5 0.11
26 2 0.05
ACGTcount: A:0.49, C:0.22, G:0.01, T:0.28
Consensus pattern (23 bp):
ACTATAAAACCCTTAAACTACAT
Found at i:8102204 original size:41 final size:40
Alignment explanation
Indices: 8102174--8102318 Score: 202
Period size: 41 Copynumber: 3.5 Consensus size: 40
8102164 GTGACGCATC
8102174 AATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTT
1 AATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTT
* * *
8102214 AATTAAAAACGCCACTAAATCCCAGAACATTAGCGGCGCTT
1 AA-TAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTT
* *
8102255 AAATAAAAACGCCGCTAAATCCCAGAACATTAGCGGCGCTT
1 -AATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTT
8102296 AA-AACAAAACGCCGCTAAAGCCC
1 AATAA-AAAA-GCCGCTAAAGCCC
8102319 CCGAAAAGTC
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
39 2 0.02
40 7 0.07
41 84 0.88
42 2 0.02
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.15
Consensus pattern (40 bp):
AATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTT
Found at i:8104717 original size:22 final size:21
Alignment explanation
Indices: 8104687--8104735 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
8104677 CAAATTTTTT
* *
8104687 AATATATATATGTTATGAAAAA
1 AATAAATATATATTAT-AAAAA
8104709 AATAAATATATATTATAAAAA
1 AATAAATATATATTATAAAAA
*
8104730 TATAAA
1 AATAAA
8104736 AATTATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
AATAAATATATATTATAAAAA
Found at i:8104764 original size:19 final size:19
Alignment explanation
Indices: 8104725--8104788 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
8104715 TATATATTAT
*
8104725 AAAAATATAAAAAT-TATG
1 AAAAATATTAAAATATATG
8104743 AAAAATGATTAAAATATA-G
1 AAAAAT-ATTAAAATATATG
* *
8104762 AAAATTATTTAAAATAT-TA
1 AAAAATA-TTAAAATATATG
8104781 AAAAATAT
1 AAAAATAT
8104789 AGAAAAGTGC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 8 0.21
19 28 0.74
20 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAAATATTAAAATATATG
Found at i:8106248 original size:22 final size:22
Alignment explanation
Indices: 8106215--8106264 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
8106205 CGCAAAGTCA
8106215 AATAAAACAATTAAAAT-AAAT
1 AATAAAACAATTAAAATAAAAT
*
8106236 AACTAAAATAATTAAAATAAAAT
1 AA-TAAAACAATTAAAATAAAAT
8106259 AATAAA
1 AATAAA
8106265 TTTACGAGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.08
22 18 0.69
23 6 0.23
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (22 bp):
AATAAAACAATTAAAATAAAAT
Found at i:8107295 original size:21 final size:21
Alignment explanation
Indices: 8107269--8107310 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8107259 TATGTGTGAA
8107269 AGTTTCGTGATTTAATTTTAT
1 AGTTTCGTGATTTAATTTTAT
8107290 AGTTTCGTGATTTAATTTTAT
1 AGTTTCGTGATTTAATTTTAT
8107311 CATTTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (21 bp):
AGTTTCGTGATTTAATTTTAT
Found at i:8108348 original size:31 final size:30
Alignment explanation
Indices: 8108313--8109082 Score: 303
Period size: 31 Copynumber: 25.2 Consensus size: 30
8108303 GCATATAGGA
*
8108313 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* * *
8108344 TGCCGAACATGATTCATG-A-ATGGTTATACCT
1 TGCCGAA-TTGATT--TGTATATGATTATACAT
*
8108375 TGCTGAATTG-TTTGGTATATGGA-TATA-AGT
1 TGCCGAATTGATTT-GTATAT-GATTATACA-T
* * * *
8108405 TGTCGAATTGATTCGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
8108434 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
8108465 TGTCGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
* *
8108496 TGTCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* *
8108527 TGCCGAACTTGATTCGTGA-ATTG-TTATACCT
1 TGCCGAA-TTGATTTGT-ATA-TGATTATACAT
8108558 TGCCGAATTG-TTTGGTATATGGA-TATA-AGT
1 TGCCGAATTGATTT-GTATAT-GATTATACA-T
* * * *
8108588 TGTCGAATTGATTCGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
8108617 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
8108648 TGTCGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
*
8108679 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* * *
8108710 TGCCGAACTTGATTCGTGA-ATGGTTATACCT
1 TGCCGAA-TTGATTTGT-ATATGATTATACAT
*
8108741 TGCCGAATTG-TTTGGTATATGGATGTA-A-GT
1 TGCCGAATTGATTT-GTATAT-GAT-TATACAT
* * * *
8108771 TGTCGAATTGATTCGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
8108800 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
8108831 TGTCGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
*
8108862 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* * * * *
8108893 TGTCGAGCTTGATTCGTGTATGGTTATACAT
1 TGCCGA-ATTGATTTGTATATGATTATACAT
*
8108924 TGCCAAATTG-TTTGGTATATGGA-TATA-AGT
1 TGCCGAATTGATTT-GTATAT-GATTATACA-T
* * *
8108954 TGCTGAATTGATTCT-TATATGGTTGTACAT
1 TGCCGAATTGATT-TGTATATGATTATACAT
* * * * * *
8108984 TGCTGAAATTAATTCGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
8109015 TGTCGACATTGAATTG-ATTATGAATATAGAA
1 TGCCGA-ATTGATTTGTA-TATGATTATACAT
* *
8109046 TGCCGAATTTAATTTGTGTATGATTATACAT
1 TGCCGAA-TTGATTTGTATATGATTATACAT
8109077 TGCCGA
1 TGCCGA
8109083 TGTAACATGC
Statistics
Matches: 539, Mismatches: 137, Indels: 126
0.67 0.17 0.16
Matches are distributed among these distances:
27 2 0.00
28 3 0.01
29 35 0.06
30 165 0.31
31 314 0.58
32 18 0.03
33 2 0.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (30 bp):
TGCCGAATTGATTTGTATATGATTATACAT
Found at i:8108568 original size:183 final size:183
Alignment explanation
Indices: 8108254--8109082 Score: 1426
Period size: 183 Copynumber: 4.5 Consensus size: 183
8108244 TATACATTGT
* *
8108254 TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGCATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
* * *
8108319 ATTGGATTTGTATATGATTATATATTGCCGAACATGATTCATGAATGGTTATACCTTGCTGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
8108384 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
*
8108437 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGTCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
*
8108502 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATTGTTATACCTTGCCGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
8108567 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
8108620 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
8108685 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
*
8108750 GTTTGGTATATGGATGTAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
8108803 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
* * * * *
8108868 ATTGGATTTGTATATGATTATATATTGTCGAGCTTGATTCGTGTATGGTTATACATTGCCAAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
* *
8108933 GTTTGGTATATGGATATAAGTTG-CTGAATTGATTCTTATATGGTTGTACATTGC
131 GTTTGGTATATGGATATAAGTTGTC-GAATTGATTCGTATAT-GTTGTACCTTGC
* * * *
8108987 TGAAATTAATTCGTACATGGTTATATATTGTCGACATTGAATTGATTATGAATATAGAATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
** * *
8109052 ATTTAATTTGTGTATGATTATACATTGCCGA
66 ATTGGATTTGTATATGATTATATATTGCCGA
8109083 TGTAACATGC
Statistics
Matches: 617, Mismatches: 27, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
182 1 0.00
183 518 0.84
184 98 0.16
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (183 bp):
TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
Found at i:8109715 original size:14 final size:13
Alignment explanation
Indices: 8109678--8109725 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 13
8109668 AGTATGTTAC
*
8109678 TATTTTATTATAT
1 TATTATATTATAT
* *
8109691 T-GTAAATTATAT
1 TATTATATTATAT
8109703 TAATTATATTATAT
1 T-ATTATATTATAT
8109717 TATTATATT
1 TATTATATT
8109726 TTAAATAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
12 9 0.32
13 9 0.32
14 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:8111642 original size:17 final size:17
Alignment explanation
Indices: 8111620--8111653 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8111610 ACGTGACATG
8111620 TACCTAAGTAATGTATA
1 TACCTAAGTAATGTATA
*
8111637 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
8111654 GGGATTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:8112827 original size:43 final size:43
Alignment explanation
Indices: 8112680--8112827 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 43
8112670 GGTGTGATTT
**
8112680 CATGTAAGACCATATCTGGGACATTGGCATCGA-A-GTAAGAAAA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATGT--GTTAA
** * *
8112723 CGGGTAAGACCATGTCTGGGACATTGGCATCGTATATG-ATT--
1 CATGTAAGACCATATCTGGGACATTGGCATCG-ATATGTGTTAA
* * * * *
8112764 CGTATAAGACCCTGTCTGGGACAGTGGCATCGATATGTGTTAA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATGTGTTAA
8112807 CATGTAAGACCATATCTGGGA
1 CATGTAAGACCATATCTGGGA
8112828 TATGACATTG
Statistics
Matches: 84, Mismatches: 15, Indels: 12
0.76 0.14 0.11
Matches are distributed among these distances:
40 5 0.06
41 30 0.36
43 46 0.55
44 1 0.01
45 1 0.01
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
CATGTAAGACCATATCTGGGACATTGGCATCGATATGTGTTAA
Found at i:8124894 original size:25 final size:25
Alignment explanation
Indices: 8124847--8124897 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
8124837 GAATGAAATT
* *
8124847 TCTTAAAATTTTATTGGGGGTAAAA
1 TCTTAAAATTTTACTGGGAGTAAAA
8124872 TCTTAAAAATTTTACT-GGAGTAAAA
1 TCTT-AAAATTTTACTGGGAGTAAAA
8124897 T
1 T
8124898 TGGGATGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (25 bp):
TCTTAAAATTTTACTGGGAGTAAAA
Found at i:8126715 original size:18 final size:17
Alignment explanation
Indices: 8126691--8126764 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 17
8126681 GTTTAAATTT
8126691 TTTTAAAAAATTAAAAA
1 TTTTAAAAAATTAAAAA
*
8126708 TTTGTAAAACATTATTAAAA
1 TTT-TAAAAAATTA--AAAA
8126728 TTTATAAAAATATTAAATAA
1 TTT-TAAAAA-ATTAAA-AA
* *
8126748 ATTTCAAAAATTAAAAA
1 TTTTAAAAAATTAAAAA
8126765 ATAGAAAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
17 5 0.11
18 15 0.32
19 7 0.15
20 16 0.34
21 4 0.09
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (17 bp):
TTTTAAAAAATTAAAAA
Found at i:8126727 original size:20 final size:18
Alignment explanation
Indices: 8126694--8126744 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
8126684 TAAATTTTTT
*
8126694 TAAAAA-ATTAAAAATTTG
1 TAAAAATATT-AAAATTTA
8126712 TAAAACATTATTAAAATTTA
1 TAAAA-A-TATTAAAATTTA
8126732 TAAAAATATTAAA
1 TAAAAATATTAAA
8126745 TAAATTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 12 0.41
19 2 0.07
20 12 0.41
21 3 0.10
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAAAATATTAAAATTTA
Found at i:8127002 original size:69 final size:64
Alignment explanation
Indices: 8126963--8127093 Score: 210
Period size: 64 Copynumber: 2.1 Consensus size: 64
8126953 GGATGTATGA
*** *
8126963 AAAAAATATTTTATAAAATAAATAAATAATTTTAATTTTAGTTTTATTAATAGTATAGATACAC
1 AAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
*
8127027 AAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACA-
1 AAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
8127090 AAAA
1 AAAA
8127094 TTTAGTTAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
63 4 0.06
64 58 0.94
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (64 bp):
AAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
Found at i:8127109 original size:64 final size:64
Alignment explanation
Indices: 8126963--8127110 Score: 163
Period size: 64 Copynumber: 2.3 Consensus size: 64
8126953 GGATGTATGA
** * *** *
8126963 AAAAAATATTTTATAAAATAAATAAATAATTTTAATTTTAGTTTTATTAATAGTATAGATACAC
1 AAAAAATATTAGAGAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
** * *
8127027 AAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACA-
1 AAAAAATATTAGAGAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
**
8127090 AAAATTTAGTTAGAGAAAATA
1 AAAAAATA-TTAGAGAAAATA
8127111 TTTTATGTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
63 6 0.08
64 67 0.92
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (64 bp):
AAAAAATATTAGAGAAAATAAATAAATAAAAATAATTTTAATTTTATTAATAGTATAGATACAC
Found at i:8128085 original size:25 final size:26
Alignment explanation
Indices: 8128033--8128106 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
8128023 CCCATTTTTT
* * *
8128033 AATAAACATTAAAAAATTATATTAAA
1 AATAAAAAATAAAAAAGTATATTAAA
*
8128059 AATAAAAAATAAAAAAGTATTTTAAA
1 AATAAAAAATAAAAAAGTATATTAAA
8128085 AAT-AAAAATAAAAATA-TATATT
1 AATAAAAAATAAAAA-AGTATATT
8128107 TATTATATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 16 0.38
26 26 0.62
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (26 bp):
AATAAAAAATAAAAAAGTATATTAAA
Found at i:8128108 original size:26 final size:27
Alignment explanation
Indices: 8128044--8128108 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 27
8128034 ATAAACATTA
8128044 AAAAAT-TATA-TTAAAAATAAAAAAT
1 AAAAATATATATTTAAAAATAAAAAAT
8128069 AAAAA-AGTAT-TTTAAAAAT-AAAAAT
1 AAAAATA-TATATTTAAAAATAAAAAAT
8128094 AAAAATATATATTTA
1 AAAAATATATATTTA
8128109 TTATATTCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
25 19 0.54
26 16 0.46
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAAATATATATTTAAAAATAAAAAAT
Found at i:8131667 original size:14 final size:14
Alignment explanation
Indices: 8131619--8131675 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
8131609 AAAATTGAAT
8131619 TTATTGTTATTTTACTG
1 TTATTGTTA--TTA-TG
*
8131636 TTATT-TCATTAT-
1 TTATTGTTATTATG
8131648 TATATTGTTATTATG
1 T-TATTGTTATTATG
8131663 TTATTGTTATTAT
1 TTATTGTTATTAT
8131676 TTAAATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
12 1 0.03
13 5 0.14
14 21 0.60
15 1 0.03
16 2 0.06
17 5 0.14
ACGTcount: A:0.23, C:0.04, G:0.09, T:0.65
Consensus pattern (14 bp):
TTATTGTTATTATG
Found at i:8137784 original size:23 final size:23
Alignment explanation
Indices: 8137749--8137793 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8137739 TGGAGTATAA
* *
8137749 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
8137772 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
8137794 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:8138474 original size:41 final size:42
Alignment explanation
Indices: 8138375--8138463 Score: 135
Period size: 41 Copynumber: 2.1 Consensus size: 42
8138365 CAGTGCCTAT
* *
8138375 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTATACGTCTAA
* *
8138417 CAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAA
1 CAGGCTTAATGCCGGTGAAACAATATCAGACTATACGTCTAA
8138458 CAGGCT
1 CAGGCT
8138464 AAGTGTCGGT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 22 0.51
42 21 0.49
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (42 bp):
CAGGCTTAATGCCGGTGAAACAATATCAGACTATACGTCTAA
Found at i:8146178 original size:22 final size:20
Alignment explanation
Indices: 8146145--8146185 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
8146135 TAAATCAAAT
*
8146145 ATTATAATAAATTTTTTTAA
1 ATTATAATAAATGTTTTTAA
8146165 ATTATAATTAAAATGTTTTTA
1 ATTATAA-T-AAATGTTTTTA
8146186 CTATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 1 0.06
22 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTATAATAAATGTTTTTAA
Found at i:8147318 original size:21 final size:21
Alignment explanation
Indices: 8147294--8147337 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8147284 GTTAATCTTA
*
8147294 GTCTGCCAAATGGCACGTTTT
1 GTCTGCCAAATAGCACGTTTT
* *
8147315 GTCTGCTAAATAGCTCGTTTT
1 GTCTGCCAAATAGCACGTTTT
8147336 GT
1 GT
8147338 TTTAGGACTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (21 bp):
GTCTGCCAAATAGCACGTTTT
Found at i:8150586 original size:56 final size:50
Alignment explanation
Indices: 8150497--8150796 Score: 277
Period size: 50 Copynumber: 5.9 Consensus size: 50
8150487 ACATTAAGAG
*
8150497 GATGAGA--TCCCATGTAAGATCATGTCTGGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC---GA
* * *
8150548 GATTATGAGAGGTCCCATGTAAGACCAGGTCTGAGACATGGCATTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
* * *
8150601 GATGAGAGGTCCCATATAAGACCATGTCTGGGATATGGCGTTGGCATCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
** * * * *
8150651 GATGAGAGGTCCCCCGTAAGACCATTTCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
* ** * *
8150701 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC-A
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CGA
* ** * * *
8150752 -A-GAAACATCCCATGTAAGACAATGTCTGGGACATAGCTTTGGCAT
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8150797 GTTATATTCA
Statistics
Matches: 206, Mismatches: 36, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
48 1 0.00
49 35 0.17
50 123 0.60
51 2 0.01
52 1 0.00
53 3 0.01
54 6 0.03
56 35 0.17
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA
Found at i:8154314 original size:3 final size:3
Alignment explanation
Indices: 8154279--8154362 Score: 64
Period size: 3 Copynumber: 27.3 Consensus size: 3
8154269 ATAAGAAAAC
* * * * *
8154279 ATA ATA CTA ACA ATA GTA TTA ATA A-A TATA ATA ATA ATA GTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
*
8154323 GATA ATA ATG ATA ATA ATA ATA ATA ACTAA ATA ATA ATA A
1 -ATA ATA ATA ATA ATA ATA ATA ATA A-T-A ATA ATA ATA A
8154363 AAAAAATTGC
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
2 2 0.03
3 56 0.88
4 4 0.06
5 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8175602 original size:26 final size:26
Alignment explanation
Indices: 8175561--8175612 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8175551 TAATATTTAA
8175561 ATTTTATTATGAAAATA-TATAAATAT
1 ATTTTATTATGAAAATAGTA-AAATAT
**
8175587 ATTTTATTATTTAAATAGTAAAATAT
1 ATTTTATTATGAAAATAGTAAAATAT
8175613 GTGTTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (26 bp):
ATTTTATTATGAAAATAGTAAAATAT
Found at i:8176034 original size:10 final size:9
Alignment explanation
Indices: 8176019--8176061 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
8176009 GGTTCCTCTA
8176019 AAAAAATTAC
1 AAAAAATT-C
8176029 AAAAAATTC
1 AAAAAATTC
*
8176038 AAAATAATTTT
1 AAAA-AA-TTC
8176049 AAAAAATTC
1 AAAAAATTC
8176058 AAAA
1 AAAA
8176062 TATTTAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 11 0.38
10 12 0.41
11 6 0.21
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAAATTC
Found at i:8176046 original size:20 final size:20
Alignment explanation
Indices: 8176018--8176063 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8176008 TGGTTCCTCT
*
8176018 AAAAAAATTACAAAAAATTC
1 AAAATAATTACAAAAAATTC
**
8176038 AAAATAATTTTAAAAAATTC
1 AAAATAATTACAAAAAATTC
8176058 AAAATA
1 AAAATA
8176064 TTTAAGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAATAATTACAAAAAATTC
Found at i:8181695 original size:160 final size:160
Alignment explanation
Indices: 8181431--8181746 Score: 524
Period size: 160 Copynumber: 2.0 Consensus size: 160
8181421 ACACGGATAC
* *
8181431 TTCAAGAAAAGTAGAGTCAGAGTAACATAGGTAGCACCTGATTGAACTGTTCAATAATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTAAACTGTTCAATAATGTCAAAG
* * *
8181496 TTTTAGATGATGAATAGCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATTTTTTGTTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
8181561 TTACTTCGTATGGTAAAAGATTTTGGATTG
131 TTACTTCGTATGGTAAAAGATTTTGGATTG
** * *
8181591 TTCAAGAAAAGTAGAGTTGGAGCAACATTGGTAGCACCTGATTAAACTGTTCAATCATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTAAACTGTTCAATAATGTCAAAG
* *
8181656 TTTTTGATGATGAATACCCTTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
*
8181721 TTACTTTGTATGGTAAAAGATTTTGG
131 TTACTTCGTATGGTAAAAGATTTTGG
8181747 CTCGATTGTA
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
160 144 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (160 bp):
TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTAAACTGTTCAATAATGTCAAAG
TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
TTACTTCGTATGGTAAAAGATTTTGGATTG
Found at i:8189361 original size:13 final size:12
Alignment explanation
Indices: 8189333--8189368 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
8189323 TTTATCAGTG
8189333 AAAAATATACAT
1 AAAAATATACAT
*
8189345 AAAAATATCCAT
1 AAAAATATACAT
8189357 AAAAA-ATACAT
1 AAAAATATACAT
8189368 A
1 A
8189369 TGACAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAAATATACAT
Found at i:8189635 original size:19 final size:19
Alignment explanation
Indices: 8189597--8189637 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8189587 ACCATATATA
* * *
8189597 ATTTCAATACATCATGCTT
1 ATTTCAATAAACCATACTT
8189616 ATTTCAATAAACCATACTT
1 ATTTCAATAAACCATACTT
8189635 ATT
1 ATT
8189638 GTACATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (19 bp):
ATTTCAATAAACCATACTT
Found at i:8191486 original size:22 final size:21
Alignment explanation
Indices: 8191444--8191493 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8191434 CGCTTCACTC
* *
8191444 GAAAAAATTAAATTGTTCAAA
1 GAAAAAATTAAATTCTCCAAA
8191465 GAAAAAATTAAATTACTCCAAA
1 GAAAAAATTAAATT-CTCCAAA
*
8191487 CAAAAAA
1 GAAAAAA
8191494 ATATGGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.62, C:0.10, G:0.06, T:0.22
Consensus pattern (21 bp):
GAAAAAATTAAATTCTCCAAA
Found at i:8208310 original size:12 final size:12
Alignment explanation
Indices: 8208293--8208319 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8208283 TTGATATACG
8208293 AAAAAGGAAAAA
1 AAAAAGGAAAAA
8208305 AAAAAGGAAAAA
1 AAAAAGGAAAAA
8208317 AAA
1 AAA
8208320 TATTTTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAAA
Found at i:8208510 original size:108 final size:97
Alignment explanation
Indices: 8208325--8208762 Score: 610
Period size: 95 Copynumber: 4.3 Consensus size: 97
8208315 AAAAATATTT
8208325 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAATAATAATTTTTTTCGTG
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTT-AAAAA-AA-AA-----TTCGTG
8208390 TCAGAATCAGATATCAGTATACGAAAAAAGTAAAAAAAAA
58 TCAGAATCAGATATCAGTATACGAAAAAAGTAAAAAAAAA
*
8208430 TTTGGGTGCTGGCCTGTCAATGGCTGGCACCCAGTACAATTTTTAAAAAAAAAATTCTTTTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA--TTT-AAAAAAAAATTC--------
8208495 GTGTCAGAATCAGATATCAGTATACGAAAAAAGTAAAAAAAAAA
55 GTGTCAGAATCAGATATCAGTATACGAAAAAAGT-AAAAAAAAA
*
8208539 ATTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAAAATTCGTGTCAGAAT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTT-AAAAAAAAATTCGTGTCAGAAT
*
8208604 CAGATATCAGTATACGAAAAAAATAAAAAAAAA
65 CAGATATCAGTATACGAAAAAAGTAAAAAAAAA
* * *
8208637 TTT-GGTGCTGGCCTATCAATGGCCAGCACCTAGTACAATTT-AAAAAAAATTCGTGTCAGAATC
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAAATTCGTGTCAGAATC
8208700 AGATATCAGTATACGAAAAAAGTAAAAAAAAA
66 AGATATCAGTATACGAAAAAAGTAAAAAAAAA
*
8208732 TTTGGGTGCTGGCCTGTAAATGGCCGGCACC
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACC
8208763 AAATTTATCA
Statistics
Matches: 309, Mismatches: 12, Indels: 33
0.87 0.03 0.09
Matches are distributed among these distances:
95 56 0.18
96 24 0.08
97 35 0.11
98 11 0.04
99 33 0.11
100 3 0.01
105 40 0.13
106 2 0.01
107 25 0.08
108 34 0.11
109 46 0.15
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (97 bp):
TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAAATTCGTGTCAGAATC
AGATATCAGTATACGAAAAAAGTAAAAAAAAA
Found at i:8209414 original size:43 final size:44
Alignment explanation
Indices: 8209352--8209463 Score: 163
Period size: 44 Copynumber: 2.5 Consensus size: 44
8209342 GAATTGAATT
*
8209352 AAATGAAATTTTGAAAAGTGAGTCAAA-ATAAATTGGATAGAAAC
1 AAATGAAA-TTTGAAAAGTGAGTCAAAGATAAATGGGATAGAAAC
* *
8209396 AAATGAAATTTGAAAAGTGAGTCAAAGATAGATGGGATAGAAAT
1 AAATGAAATTTGAAAAGTGAGTCAAAGATAAATGGGATAGAAAC
* *
8209440 AATTGAAATTTGAAAAGTTAGTCA
1 AAATGAAATTTGAAAAGTGAGTCA
8209464 GAACAATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 18 0.29
44 44 0.71
ACGTcount: A:0.50, C:0.04, G:0.21, T:0.26
Consensus pattern (44 bp):
AAATGAAATTTGAAAAGTGAGTCAAAGATAAATGGGATAGAAAC
Found at i:8210792 original size:107 final size:104
Alignment explanation
Indices: 8210461--8210814 Score: 495
Period size: 103 Copynumber: 3.4 Consensus size: 104
8210451 ATTACAAGGT
* * *
8210461 GGTGCCGGCCATTGACAGGCCAACACTCAAA-TTTTTTTTTATTTTTTTCGTATTCTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATACTGATATCTG
8210525 ATTCTGACAC-AAAAAAAGAAATTTTTTTAAATTGTACTG
66 ATTCTGACACGAAAAAAA-AAATTTTTTTAAATTGTACTG
* * *
8210564 GGTGCCGGCCATTGATAGGCCAGTACCCAAAATTTTTTTTTTTACTTTTTTCGTATACTGATATC
1 GGTGCCGGCCATTGACAGGCCAGCACCC-AAA-TTTTTTTTTTATTTTTTTCGTATACTGATATC
*
8210629 TGATTTTGACACGAAAAAAAATAA----TTTAAATTGTACTG
64 TGATTCTGACACGAAAAAAAA-AATTTTTTTAAATTGTACTG
* *
8210667 GGTGTCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCATATACTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATACTGATATCTG
* *
8210732 ATTCTGACACGAAAAAAATAAATTTTTTTTTAAATTCTACCG
66 ATTCTGACACGAAAAAAA-AAA--TTTTTTTAAATTGTACTG
*
8210774 GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTT
1 GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTT
8210815 CCTTTTTCTT
Statistics
Matches: 222, Mismatches: 17, Indels: 20
0.86 0.07 0.08
Matches are distributed among these distances:
101 51 0.23
102 4 0.02
103 63 0.28
104 3 0.01
106 41 0.18
107 60 0.27
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (104 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATACTGATATCTG
ATTCTGACACGAAAAAAAAAATTTTTTTAAATTGTACTG
Found at i:8210821 original size:107 final size:104
Alignment explanation
Indices: 8210461--8210821 Score: 482
Period size: 107 Copynumber: 3.5 Consensus size: 104
8210451 ATTACAAGGT
* * * * *
8210461 GGTGCCGGCCATTGACAGGCCAACACTCAA-ATTTTTTTTTATTTTTTTCGTATTCTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTG
8210525 ATTCTGACAC-AAAAAAAGAAATTTTTTTAAATTGTACTG
66 ATTCTGACACGAAAAAAA-AAATTTTTTTAAATTGTACTG
* *
8210564 GGTGCCGGCCATTGATAGGCCAGTACCCAAAATTTTTTTTTTTACTTTTTTCGTATACTGATATC
1 GGTGCCGGCCATTGACAGGCCAGCACCC--AATTTTTTTTTTTACTTTTTTCGTATACTGATATC
*
8210629 TGATTTTGACACGAAAAAAAATAA----TTTAAATTGTACTG
64 TGATTCTGACACGAAAAAAAA-AATTTTTTTAAATTGTACTG
* * * *
8210667 GGTGTCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCATATACTGATATCTG
1 GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTG
* *
8210732 ATTCTGACACGAAAAAAATAAATTTTTTTTTAAATTCTACCG
66 ATTCTGACACGAAAAAAA-AAA--TTTTTTTAAATTGTACTG
*
8210774 GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTCCTTTTT
1 GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTT
8210822 CTTTTTTTTT
Statistics
Matches: 225, Mismatches: 21, Indels: 20
0.85 0.08 0.08
Matches are distributed among these distances:
101 53 0.24
102 1 0.00
103 63 0.28
105 2 0.01
106 41 0.18
107 65 0.29
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (104 bp):
GGTGCCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTG
ATTCTGACACGAAAAAAAAAATTTTTTTAAATTGTACTG
Found at i:8210828 original size:18 final size:18
Alignment explanation
Indices: 8210805--8210840 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8210795 AGCACCCAAT
8210805 TTTTTTTTTTCCTTTTTC
1 TTTTTTTTTTCCTTTTTC
8210823 TTTTTTTTTTCCTTTTTC
1 TTTTTTTTTTCCTTTTTC
8210841 GTATATCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTCCTTTTTC
Found at i:8211197 original size:21 final size:20
Alignment explanation
Indices: 8211173--8211211 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8211163 CCTAAATTTT
8211173 TTTAAAAAGATCCATAAAATC
1 TTTAAAAA-ATCCATAAAATC
* *
8211194 TTTAATAAATTCATAAAA
1 TTTAAAAAATCCATAAAA
8211212 ATTCTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (20 bp):
TTTAAAAAATCCATAAAATC
Found at i:8219425 original size:14 final size:17
Alignment explanation
Indices: 8219388--8219430 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 17
8219378 AAATTAATTC
8219388 TAATGTATATTATTAAAT
1 TAAT-TATATTATTAAAT
8219406 TAATTATATTA-TAAA-
1 TAATTATATTATTAAAT
8219421 T-ATTATATTA
1 TAATTATATTA
8219431 AGAAATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.36
15 1 0.04
16 4 0.16
17 7 0.28
18 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TAATTATATTATTAAAT
Found at i:8224878 original size:36 final size:36
Alignment explanation
Indices: 8224830--8225010 Score: 317
Period size: 36 Copynumber: 5.0 Consensus size: 36
8224820 GGTAGCTTTA
*
8224830 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
8224866 GCTATAATTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
8224902 GCTATACTTATCCGATCATGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
8224938 CCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
8224974 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
8225010 G
1 G
8225011 GTAGCCTTAG
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 136 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (36 bp):
GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:8225083 original size:45 final size:46
Alignment explanation
Indices: 8224974--8225099 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
8224964 AGTGATAAGT
*
8224974 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTA
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTA
*
8225020 GCTACACTTATCTGATCAAGTGAAAAAGTGATATGTGGTAGCC-TA
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTA
* *
8225065 GCTACACTTATCTAATCAAG-G-ACAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTG
8225100 ATCATACGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 12 0.16
44 1 0.01
45 21 0.28
46 41 0.55
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTA
Found at i:8228320 original size:23 final size:23
Alignment explanation
Indices: 8228294--8228385 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 23
8228284 GGACTCACCA
8228294 CAGCTTGTATGAGCTTACCGTTT
1 CAGCTTGTATGAGCTTACCGTTT
* *
8228317 CAGC-TCTACGGAGCTTACCGTTT
1 CAGCTTGTA-TGAGCTTACCGTTT
* *
8228340 CAGCTCG-ATAGAGCTTACCATTTAT
1 CAGCTTGTAT-GAGCTTACC-GTT-T
* *
8228365 CAGCTCGGAATGAGCTTACCG
1 CAGCT-TGTATGAGCTTACCG
8228386 ATCATGGCTC
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
22 3 0.06
23 31 0.57
24 2 0.04
25 6 0.11
26 10 0.19
27 2 0.04
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (23 bp):
CAGCTTGTATGAGCTTACCGTTT
Found at i:8235109 original size:23 final size:23
Alignment explanation
Indices: 8235093--8235147 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
8235083 CAGCTTGTAT
8235093 GAGCTTACCGTTTCAGCTCTATG
1 GAGCTTACCGTTTCAGCTCTATG
* * * *
8235116 GAGCTTACCGTGTCAACTCGATA
1 GAGCTTACCGTTTCAGCTCTATG
8235139 GAGCTTACC
1 GAGCTTACC
8235148 ATTTATCAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCTATG
Found at i:8237505 original size:21 final size:21
Alignment explanation
Indices: 8237463--8237505 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8237453 TTTCAAAAAA
* *
8237463 ATTATATATGTATTATATTAT
1 ATTATATATGTATAATAATAT
8237484 ATTATATTAT-TATAATAATAT
1 ATTATA-TATGTATAATAATAT
8237505 A
1 A
8237506 ACTAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
ATTATATATGTATAATAATAT
Found at i:8237591 original size:9 final size:9
Alignment explanation
Indices: 8237574--8237607 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8237564 CGAAATAGGG
8237574 AGAAAAGAA
1 AGAAAAGAA
*
8237583 AGCAAAGAA
1 AGAAAAGAA
8237592 AGAAAAGAA
1 AGAAAAGAA
8237601 AGGAAAA
1 A-GAAAA
8237608 ACTAGAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.77
10 5 0.23
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:8241289 original size:32 final size:32
Alignment explanation
Indices: 8241250--8241320 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
8241240 ATTTTAAAGG
* *
8241250 TTGATTAATACAAATCATTGGAGAAATTAAGA
1 TTGATTAATACAAACCATTGAAGAAATTAAGA
*
8241282 TTGATTAATACAAACCCTTGAAGAAATTAAGA
1 TTGATTAATACAAACCATTGAAGAAATTAAGA
8241314 TTGATTA
1 TTGATTA
8241321 GAAATTTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.32
Consensus pattern (32 bp):
TTGATTAATACAAACCATTGAAGAAATTAAGA
Found at i:8244110 original size:52 final size:52
Alignment explanation
Indices: 8244048--8244151 Score: 119
Period size: 52 Copynumber: 2.0 Consensus size: 52
8244038 AAAAATGCTC
8244048 TTTTATCATT-ATTTATTTTA-ATTT-TTTTCACATTTATTATTTAGTTG-AAACTG
1 TTTTATCATTAATTTA-TTTACATTTCTTTT-ACA--TATTATTTA-TTGTAAACTG
8244101 TTTTA-CATTAAATTTATTTACATTTCTTTTACATATTATTTATTGTAAACT
1 TTTTATCATT-AATTTATTTACATTTCTTTTACATATTATTTATTGTAAACT
8244152 TATGTATGTC
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
51 3 0.07
52 18 0.39
53 9 0.20
54 12 0.26
55 4 0.09
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.59
Consensus pattern (52 bp):
TTTTATCATTAATTTATTTACATTTCTTTTACATATTATTTATTGTAAACTG
Found at i:8254048 original size:6 final size:6
Alignment explanation
Indices: 8254037--8254082 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
8254027 TTTTTGAGCT
8254037 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATA
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATA
8254083 ATTCTGAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:8258449 original size:42 final size:41
Alignment explanation
Indices: 8258390--8258469 Score: 117
Period size: 40 Copynumber: 1.9 Consensus size: 41
8258380 TATATCCATT
*
8258390 TTTTTAAAATTAATAGAAAATAATATTTTAAAATTATAATCTA
1 TTTTTAAAATTAATAGAAAAT-A-ATCTTAAAATTATAATCTA
*
8258433 TTTTT-AAATTAATAGAAGATAATCTTAAAATTATAAT
1 TTTTTAAAATTAATAGAAAATAATCTTAAAATTATAAT
8258470 AACTAGATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
40 15 0.43
41 1 0.03
42 14 0.40
43 5 0.14
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.44
Consensus pattern (41 bp):
TTTTTAAAATTAATAGAAAATAATCTTAAAATTATAATCTA
Found at i:8258819 original size:16 final size:14
Alignment explanation
Indices: 8258783--8258812 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8258773 ATTATTAAAT
8258783 AAAT-TTTTAAAGA
1 AAATATTTTAAAGA
8258796 AAATATTTTAAAGA
1 AAATATTTTAAAGA
8258810 AAA
1 AAA
8258813 AATATTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATATTTTAAAGA
Found at i:8262151 original size:20 final size:20
Alignment explanation
Indices: 8262112--8262153 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8262102 ATTAAACAAT
* *
8262112 AATTATGTCTCTTGATGAAC
1 AATTATATCTCTTGACGAAC
*
8262132 AATTATATCTCTTGGCGAAC
1 AATTATATCTCTTGACGAAC
8262152 AA
1 AA
8262154 GTATTGCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (20 bp):
AATTATATCTCTTGACGAAC
Found at i:8263385 original size:10 final size:10
Alignment explanation
Indices: 8263352--8263385 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
8263342 ATTTTTATTT
*
8263352 TTTAAAAAAA
1 TTTATAAAAA
8263362 TTTAT-AAAA
1 TTTATAAAAA
8263371 TTTATAAAAA
1 TTTATAAAAA
8263381 TTTAT
1 TTTAT
8263386 TTAATTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:8265848 original size:9 final size:9
Alignment explanation
Indices: 8265834--8265874 Score: 64
Period size: 9 Copynumber: 4.3 Consensus size: 9
8265824 AAGAGCTTTA
8265834 TTTCATAAT
1 TTTCATAAT
8265843 TTTCATAATT
1 TTTCATAA-T
8265853 ATTTCATAAT
1 -TTTCATAAT
8265863 TTTCATAAT
1 TTTCATAAT
8265872 TTT
1 TTT
8265875 GAGAACTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 20 0.67
10 2 0.07
11 8 0.27
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTCATAAT
Found at i:8265856 original size:20 final size:20
Alignment explanation
Indices: 8265831--8265872 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
8265821 TTGAAGAGCT
8265831 TTATTTCATAATTTTCATAA
1 TTATTTCATAATTTTCATAA
8265851 TTATTTCATAATTTTCATAA
1 TTATTTCATAATTTTCATAA
8265871 TT
1 TT
8265873 TTGAGAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTTCATAATTTTCATAA
Found at i:8267420 original size:50 final size:50
Alignment explanation
Indices: 8267298--8267589 Score: 302
Period size: 50 Copynumber: 5.7 Consensus size: 50
8267288 GATAATAACA
* * * *
8267298 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * *
8267347 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * *
8267397 TGCCCATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** ** *
8267447 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
** * **
8267497 TGCCAACACCATGTCCCAGACATGGTCTTACATGGAACCTCTCATAACCTCGATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TCG--G
8267552 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
8267590 TCTCTTTACC
Statistics
Matches: 208, Mismatches: 26, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
48 4 0.02
49 36 0.17
50 130 0.62
53 3 0.01
55 1 0.00
56 34 0.16
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:8274627 original size:43 final size:45
Alignment explanation
Indices: 8274520--8274620 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 45
8274510 CTTTACCGTT
* *
8274520 TTGATATATTTGATATATTGAGTATGTTCGGTATGTTTCTGTATTTC
1 TTGATATTTTTGATATATTGAGTATGTT--GTATGTTTCTGTATATC
*
8274567 TTGGTATTTTTGATATATTGAGTATG-T-TATGTTAT-TGTATATC
1 TTGATATTTTTGATATATTGAGTATGTTGTATGTT-TCTGTATATC
8274610 TTGATATTTTT
1 TTGATATTTTT
8274621 TTTATATATT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
43 23 0.47
44 1 0.02
46 1 0.02
47 24 0.49
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (45 bp):
TTGATATTTTTGATATATTGAGTATGTTGTATGTTTCTGTATATC
Found at i:8275459 original size:29 final size:30
Alignment explanation
Indices: 8275421--8275478 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
8275411 TGATATAACC
*
8275421 TTGATAGTTTAGGGAT-ATAATTAGAATGAT
1 TTGATAGTTTAAGGATCA-AATTAGAATGAT
*
8275451 TTGA-AGTTTAAGGATCAATTTAGAATGA
1 TTGATAGTTTAAGGATCAAATTAGAATGA
8275479 GCTCATAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (30 bp):
TTGATAGTTTAAGGATCAAATTAGAATGAT
Found at i:8278298 original size:24 final size:24
Alignment explanation
Indices: 8278241--8278292 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8278231 TTTTTAAAAG
* * *
8278241 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
8278265 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
8278289 ATTT
1 ATTT
8278293 GACATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:8278303 original size:24 final size:24
Alignment explanation
Indices: 8278258--8278304 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
8278248 ATTTATGAGT
*
8278258 ATAATATATTTAGCATTTATTAGC
1 ATAATATATTTAGCATTAATTAGC
8278282 ATAATATATTT-GACATTAATTAG
1 ATAATATATTTAG-CATTAATTAG
8278305 AATTAGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (24 bp):
ATAATATATTTAGCATTAATTAGC
Found at i:8283241 original size:18 final size:17
Alignment explanation
Indices: 8283208--8283246 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8283198 TTTTATAAAT
8283208 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
8283226 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
8283243 TGTG
1 TGTG
8283247 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:8283499 original size:23 final size:23
Alignment explanation
Indices: 8283472--8283547 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
8283462 AGTGTTATTG
8283472 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
8283495 TTCAGTGGTAGCTACGACTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8283518 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8283541 ATCAGTG
1 ATCAGTG
8283548 TGGCACTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8287709 original size:2 final size:2
Alignment explanation
Indices: 8287704--8287746 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8287694 CCAAACCTAA
8287704 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8287746 T
1 T
8287747 TCTTCTTCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8304135 original size:44 final size:44
Alignment explanation
Indices: 8304087--8304287 Score: 139
Period size: 44 Copynumber: 4.6 Consensus size: 44
8304077 TTCGATCTGC
8304087 TCCACTACTGTTTAGGGTGAC-AGAATTTGCAATCTTCGACCTAT
1 TCCACTACTGTTTAGGGTGACAAG-ATTTGCAATCTTCGACCTAT
* * ** * *
8304131 TCCACTACTGTTTAGGGTGATAAGA-CT--AATGGCTTAAATCTGCT
1 TCCACTACTGTTTAGGGTGACAAGATTTGCAAT--CTTCGACCT-AT
* * ** * * **
8304175 TCTC-C-ACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTGC
1 TC-CACTACTGT-TTAGGG-TGACAAGATTTGCAATCTTCGACCTAT
8304219 TCCACTACTGTTTAGGGTGAC-AGAATTTGCAATCTTCGACCTAT
1 TCCACTACTGTTTAGGGTGACAAG-ATTTGCAATCTTCGACCTAT
*
8304263 TCCACTACTGTTTAGGGTGATAAGA
1 TCCACTACTGTTTAGGGTGACAAGA
8304288 CTAATGGCTT
Statistics
Matches: 119, Mismatches: 23, Indels: 30
0.69 0.13 0.17
Matches are distributed among these distances:
41 3 0.03
43 18 0.15
44 76 0.64
45 20 0.17
47 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
TCCACTACTGTTTAGGGTGACAAGATTTGCAATCTTCGACCTAT
Found at i:8304188 original size:132 final size:132
Alignment explanation
Indices: 8303791--8304949 Score: 1924
Period size: 132 Copynumber: 8.8 Consensus size: 132
8303781 TCCATTCCAC
*
8303791 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * *
8303856 TCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAACGACTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8303921 TA
131 TA
* * *
8303923 TTGGAAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATAT-CAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
8303987 TCTTTGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304052 TA
131 TA
* *
8304054 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
8304119 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304184 TA
131 TA
* *
8304186 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
8304251 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304316 TA
131 TA
*
8304318 TTGGAAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * ** *
8304383 TCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACAAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304448 TA
131 TA
8304450 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
8304515 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAATG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304580 TA
131 TA
* *
8304582 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGTTTAGGGTGACATAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
8304647 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304712 TA
131 TA
* * *
8304714 TTGGGAAGATAAGATTCACCATCTTCAATCTGCTCCACTACTGCATAGGGTGACGGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * ** *
8304779 TCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACAAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
8304844 TA
131 TA
* * * *
8304846 TTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATTTTCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * **
8304911 TCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACT
66 TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACT
8304950 GCTTAGAGAG
Statistics
Matches: 970, Mismatches: 56, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
131 120 0.12
132 850 0.88
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
TCTTCGACCTATTCCACTACTGTTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
TA
Found at i:8305145 original size:50 final size:50
Alignment explanation
Indices: 8305094--8306212 Score: 1159
Period size: 50 Copynumber: 22.6 Consensus size: 50
8305084 ACCACCTGGG
* *
8305094 AAGTAAGATTCGCTGTTGT-GACTTCAATCTTTTTAATTGCAATGTCGGGGA
1 AAGTAAGATCCGCTGTTGTAG-CTTCAATCTTTTTAATTGCAATGTC-AGGA
** * * ** * ** * *
8305145 AAG-AAGATTTGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * *
8305194 AAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAATTGC-A-G---GGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * ** * * *
8305239 AAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* *
8305289 AAGTAAGATCCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* *
8305339 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGTAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * ** * * *
8305389 AAGTAAGATCCGCTGTTGCAGCTTCAATCTGTTCCACTGCAACG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* *
8305439 AAGTAAGATCTGCTATTGTAGCTTCAAT-TTTTTAATTGCAATGTCAAGG-
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* * ** * * *
8305488 AAGTAAGATCCACTGTTGTAGCTTCAATCTGTTCCATTGCAACGTTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
*
8305538 AAGTAAAATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAAGG-
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* ** * *
8305588 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCATTGCAACG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* *
8305638 AAGTAAGATCCGCTGTTGTAGCTTCAATTTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* ** *
8305688 AAGTAAGATCCGCTGTTGTAGCTTCAATCTATTCCACTGCAATG-CTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
8305738 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* ** *
8305788 AAGTAAGATCCGCTGTTGTAGCTTCAATCTATTCCACTGCAATG-CTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* * *
8305838 AAGTAAGATCTGTTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * ** * * * *
8305888 AAGTAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTACAACG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
*
8305938 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * ** * * *
8305988 AAGTAAGATCCGCAGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* *
8306038 AAGTAAGATCCACTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* * * ** *
8306088 AAGTAAGGTCCGCTGCTGTAGCTTCAATCTGTTCCATTGCAATG-CTAAGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGA
* *
8306138 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAA---CTA-CT-AGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
* *
8306183 AAGCAAGATCCGCAGTTGTAGCTTCAATCT
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCT
8306213 GTTCCACTCA
Statistics
Matches: 880, Mismatches: 163, Indels: 56
0.80 0.15 0.05
Matches are distributed among these distances:
45 66 0.08
46 1 0.00
47 3 0.00
48 1 0.00
49 52 0.06
50 745 0.85
51 12 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (50 bp):
AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGA
Found at i:8306168 original size:100 final size:100
Alignment explanation
Indices: 8305243--8306272 Score: 1445
Period size: 100 Copynumber: 10.4 Consensus size: 100
8305233 CAGGGGAAGC
* ** * * * *
8305243 AAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG-CTAAGAAAGTAAGATCCGCTGTTG
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-AGGGAAGTAAGATCCGCTGTTG
* * ** * * * *
8305307 TAGCTTTAATCTTTTTAATTGCAATG-TCAGGGAAGT
65 TAGCTTCAATCTGTTCCACTGCAACGCT-AAGAAAGT
* *
8305343 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGTAATGTCAGGGAAGTAAGATCCGCTGTTGC
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
8305408 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
* * * *
8305443 AAGATCTGCTATTGTAGCTTCAAT-TTTTTAATTGCAATGTCAAGGAAGTAAGATCCACTGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
* *
8305507 AGCTTCAATCTGTTCCATTGCAACGTTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
* *
8305542 AAAATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAAGGAAGTAAGATCCGCTGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
*
8305607 AGCTTCAATCTGTTCCATTGCAACGCTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
*
8305642 AAGATCCGCTGTTGTAGCTTCAATTTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
* * *
8305707 AGCTTCAATCTATTCCACTGCAATGCTAGGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
*
8305742 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGAAAGTAAGATCCGCTGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
* * *
8305807 AGCTTCAATCTATTCCACTGCAATGCTAGGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
* * *
8305842 AAGATCTGTTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTATTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
*
8305907 AGCTTCAATCTGTTCCACTACAACGCTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
*
8305942 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCAGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
8306007 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
* * *
8306042 AAGATCCACTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGGTCCGCTGCTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
* *
8306107 AGCTTCAATCTGTTCCATTGCAATGCTAAGAAAGT
66 AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
* * * * *
8306142 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAA---CTA-CT-AGGAAAGCAAGATCCGCAGTTGT
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
*
8306202 AGCTTCAATCTGTTCCACT-C-ACTGCCT-GGAAAGGT
66 AGCTTCAATCTGTTCCACTGCAAC-G-CTAAGAAA-GT
* * * *
8306237 AAGATTCACCGTTGTGGCTTCAATC-TTTTAATTGCA
1 AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCA
8306273 GACTATGGTT
Statistics
Matches: 847, Mismatches: 74, Indels: 21
0.90 0.08 0.02
Matches are distributed among these distances:
93 1 0.00
94 12 0.01
95 61 0.07
96 1 0.00
97 3 0.00
99 90 0.11
100 677 0.80
101 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (100 bp):
AAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGT
AGCTTCAATCTGTTCCACTGCAACGCTAAGAAAGT
Found at i:8308794 original size:17 final size:17
Alignment explanation
Indices: 8308757--8308793 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
8308747 TGACCTCTCC
8308757 TTTTACTTTTTCTTCTT
1 TTTTACTTTTTCTTCTT
*
8308774 TTTTCCTTTTTCTT-TT
1 TTTTACTTTTTCTTCTT
8308790 TTTT
1 TTTT
8308794 TTTCTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTACTTTTTCTTCTT
Found at i:8308809 original size:21 final size:21
Alignment explanation
Indices: 8308785--8308837 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 21
8308775 TTTCCTTTTT
**
8308785 CTTTTTTTTTTTCTATTTTGA
1 CTTTTTTTTTTGATATTTTGA
*
8308806 CTTTGATTTTTTTGATTTTTTGA
1 CTTT--TTTTTTTGATATTTTGA
8308829 -TTTTTTTTT
1 CTTTTTTTTT
8308838 GAGTCTGAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 6 0.22
21 4 0.15
22 3 0.11
23 14 0.52
ACGTcount: A:0.09, C:0.06, G:0.08, T:0.77
Consensus pattern (21 bp):
CTTTTTTTTTTGATATTTTGA
Found at i:8308819 original size:9 final size:9
Alignment explanation
Indices: 8308807--8308835 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8308797 CTATTTTGAC
8308807 TTTGATTTT
1 TTTGATTTT
8308816 TTTGA-TTT
1 TTTGATTTT
8308824 TTTGATTTT
1 TTTGATTTT
8308833 TTT
1 TTT
8308836 TTGAGTCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (9 bp):
TTTGATTTT
Found at i:8316044 original size:12 final size:12
Alignment explanation
Indices: 8316027--8316052 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8316017 CAAAATAGGC
8316027 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8316039 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8316051 TT
1 TT
8316053 AGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:8316086 original size:41 final size:40
Alignment explanation
Indices: 8316041--8316134 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
8316031 AGCGGCGTTT
8316041 TTAGCGGCG-TTTAGACAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT-GA-AAAAAACGCCACTAAAAATCAAGCA
* * ** *
8316082 TTAGCGGCGCTTTTATAAAAACGCCACTAAAGGTCGAGCA
1 TTAGCGGCGCTTTGAAAAAAACGCCACTAAAAATCAAGCA
8316122 TTAGCGGCGCTTT
1 TTAGCGGCGCTTT
8316135 TTGGAAAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
40 34 0.72
41 10 0.21
42 3 0.06
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTGAAAAAAACGCCACTAAAAATCAAGCA
Found at i:8316111 original size:40 final size:40
Alignment explanation
Indices: 8316058--8316163 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
8316048 CGTTTAGACA
8316058 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTAT-
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTT-TG
** *
8316098 AAAAACGCCACTAAAGGTCGAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
* * *
8316138 GAAAATGCCGCTAAAAAT-AAGCATTA
1 AAAAACGCCACTAAAAATCAAGCATTA
8316164 CCGGTGTTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
39 8 0.14
40 48 0.86
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.22
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
Found at i:8316288 original size:41 final size:41
Alignment explanation
Indices: 8316228--8316512 Score: 473
Period size: 41 Copynumber: 7.0 Consensus size: 41
8316218 TGAGTTTTTG
*
8316228 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATTCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
8316269 GGGCCTTTAGCGGCATTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * *
8316310 GGGCCTTTAGCGGCGTTTGTGAAGAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
8316351 GGGCCTTTAGCGGCG-TTTTGTAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTG-AAAAAGCGCCGCTAATGCTC
*
8316392 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
8316433 GGGCCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
8316474 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
8316513 CCGCTTTTGA
Statistics
Matches: 229, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 4 0.02
41 220 0.96
42 5 0.02
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:8316975 original size:14 final size:15
Alignment explanation
Indices: 8316947--8316979 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
8316937 AAGGTTTATA
8316947 GATTATGGAATTAGG
1 GATTATGGAATTAGG
8316962 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
8316976 GATT
1 GATT
8316980 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:8317222 original size:7 final size:7
Alignment explanation
Indices: 8317202--8317250 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
8317192 ATAAGATTTT
8317202 GGGGTTA
1 GGGGTTA
**
8317209 GTAGTTA
1 GGGGTTA
8317216 GGGGTTA
1 GGGGTTA
8317223 GGGGTTA
1 GGGGTTA
8317230 GGGGTTA
1 GGGGTTA
**
8317237 AAGGTTA
1 GGGGTTA
*
8317244 GAGGTTA
1 GGGGTTA
8317251 AGAGTTAATG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (7 bp):
GGGGTTA
Found at i:8317236 original size:21 final size:21
Alignment explanation
Indices: 8317202--8317258 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
8317192 ATAAGATTTT
* **
8317202 GGGGTTAGTAGTTAGGGGTTA
1 GGGGTTAGGAGTTAAAGGTTA
*
8317223 GGGGTTAGGGGTTAAAGGTTA
1 GGGGTTAGGAGTTAAAGGTTA
* *
8317244 GAGGTTAAGAGTTAA
1 GGGGTTAGGAGTTAA
8317259 TGATTTAGGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.44, T:0.30
Consensus pattern (21 bp):
GGGGTTAGGAGTTAAAGGTTA
Found at i:8317257 original size:14 final size:14
Alignment explanation
Indices: 8317202--8317257 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
8317192 ATAAGATTTT
8317202 GGGGTT-AGTAGTTA
1 GGGGTTAAG-AGTTA
* *
8317216 GGGGTTAGGGGTTA
1 GGGGTTAAGAGTTA
8317230 GGGGTTAA-AGGTTA
1 GGGGTTAAGA-GTTA
*
8317244 GAGGTTAAGAGTTA
1 GGGGTTAAGAGTTA
8317258 ATGATTTAGG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 32 0.94
15 2 0.06
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (14 bp):
GGGGTTAAGAGTTA
Found at i:8317278 original size:15 final size:15
Alignment explanation
Indices: 8317255--8317284 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8317245 AGGTTAAGAG
*
8317255 TTAATGATTTAGGGT
1 TTAAAGATTTAGGGT
8317270 TTAAAGATTTAGGGT
1 TTAAAGATTTAGGGT
8317285 CGGGTTAGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
TTAAAGATTTAGGGT
Found at i:8321787 original size:43 final size:43
Alignment explanation
Indices: 8321726--8321816 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
8321716 CTTTGAGTTC
** * * *
8321726 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTAATTGATTAAGAAAATGCATTATATATTTT
*
8321768 ATTACCAAGATTTAATTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTAATTGATTAAGAAAATGCATTATATATTTT
8321811 ATTACC
1 ATTACC
8321817 TTGCATATGT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 4 0.10
43 38 0.90
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTAATTGATTAAGAAAATGCATTATATATTTT
Found at i:8322154 original size:43 final size:43
Alignment explanation
Indices: 8322089--8322292 Score: 256
Period size: 42 Copynumber: 4.8 Consensus size: 43
8322079 AAGATATATT
** * *
8322089 TTTAGCGGCGTTTGTGTTAAAAGCGCCGCTAAAGCTCAAT-ATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-ATGGTC
* *
8322132 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
*
8322175 TTTAGCGGCGTTTGTGAGG--AAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTG-GGAAAAGCGCCGCTAAAGGTCATGGTC
* *
8322217 TTTAGTGGCGTTTGTAGGG--AAGCGACGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCATGGTC
*
8322259 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
8322293 TTAGCGACGT
Statistics
Matches: 144, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
41 3 0.02
42 74 0.51
43 65 0.45
44 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:8324659 original size:2 final size:2
Alignment explanation
Indices: 8324652--8324682 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8324642 AGGAAAAGGT
8324652 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8324683 AGATTTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8327209 original size:28 final size:28
Alignment explanation
Indices: 8327177--8327241 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
8327167 TATCAAAAAT
*
8327177 ATCAATAAAAATTTTTAAGTGTAGAGAC
1 ATCAATAAAAAATTTTAAGTGTAGAGAC
*
8327205 ATCAATAAAAAATTTTAAGTGTAGAGAT
1 ATCAATAAAAAATTTTAAGTGTAGAGAC
8327233 ATCAATAAA
1 ATCAATAAA
8327242 TATCAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.51, C:0.06, G:0.12, T:0.31
Consensus pattern (28 bp):
ATCAATAAAAAATTTTAAGTGTAGAGAC
Found at i:8333282 original size:17 final size:17
Alignment explanation
Indices: 8333260--8333308 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
8333250 ATATTAAAAT
*
8333260 AATAAAAATAACATATC
1 AATAAAAATAACATAAC
* *
8333277 AATAAAAAAAATATAAC
1 AATAAAAATAACATAAC
*
8333294 AA-AAACATAACATAA
1 AATAAAAATAACATAA
8333309 ACTATCTCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.18
Consensus pattern (17 bp):
AATAAAAATAACATAAC
Found at i:8334192 original size:3 final size:3
Alignment explanation
Indices: 8334126--8334179 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
8334116 TCCACCCTCT
8334126 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8334174 TTC TTC
1 TTC TTC
8334180 AAAGTTTTCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:8334378 original size:31 final size:31
Alignment explanation
Indices: 8334320--8334378 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
8334310 GCGTGACCGA
*
8334320 AGGTGCCGCCTCTGCACTAGGCGTGACCAAG
1 AGGTGCCGCCTCTGCACTAGGCATGACCAAG
*
8334351 AGGTGCCGCCTCTTCAGC-AGGCATGACC
1 AGGTGCCGCCTCTGCA-CTAGGCATGACC
8334379 TTGCTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.17
Consensus pattern (31 bp):
AGGTGCCGCCTCTGCACTAGGCATGACCAAG
Found at i:8336060 original size:23 final size:24
Alignment explanation
Indices: 8336025--8336072 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
8336015 ATACCTAAAC
8336025 TTCACACAAATAAAAAACAATCAA
1 TTCACACAAATAAAAAACAATCAA
* * *
8336049 TTCA-ACATATAAAACACATTCAA
1 TTCACACAAATAAAAAACAATCAA
8336072 T
1 T
8336073 CACCATCACC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23
Consensus pattern (24 bp):
TTCACACAAATAAAAAACAATCAA
Found at i:8342541 original size:44 final size:44
Alignment explanation
Indices: 8342448--8342541 Score: 113
Period size: 44 Copynumber: 2.1 Consensus size: 44
8342438 GGGTTTTAAA
*
8342448 TTTGGGCTCAGGTAGTTTAGGATTGGGCTAGGTTGGTTTAGGGT
1 TTTGGGCTCAGGTAGTTTAGGATTGGGCTAGGTTAGTTTAGGGT
* *
8342492 ATTGGGCT-AGGTTGGTTTAGGGTATTGGGCTAGGTTAG-TT-GGGT
1 TTTGGGCTCAGG-TAGTTTA-GG-ATTGGGCTAGGTTAGTTTAGGGT
8342536 TTTGGG
1 TTTGGG
8342542 TTTAGCCCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
43 3 0.07
44 22 0.51
45 4 0.09
46 14 0.33
ACGTcount: A:0.13, C:0.05, G:0.43, T:0.39
Consensus pattern (44 bp):
TTTGGGCTCAGGTAGTTTAGGATTGGGCTAGGTTAGTTTAGGGT
Found at i:8342542 original size:28 final size:23
Alignment explanation
Indices: 8342449--8342527 Score: 119
Period size: 23 Copynumber: 3.5 Consensus size: 23
8342439 GGTTTTAAAT
*
8342449 TTGGGCTCAGG-TAGTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
8342470 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
8342493 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
8342516 TTGGGCTAGGTT
1 TTGGGCTAGGTT
8342528 AGTTGGGTTT
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
20 3 0.06
21 13 0.24
22 2 0.04
23 36 0.67
ACGTcount: A:0.14, C:0.06, G:0.42, T:0.38
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:8343035 original size:44 final size:44
Alignment explanation
Indices: 8342932--8343804 Score: 824
Period size: 44 Copynumber: 20.1 Consensus size: 44
8342922 CGCCATCGTC
* * *
8342932 GATCTGCT-TCTTCGATCTTCTTCACCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * * * *
8342976 AATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
8343019 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
*
8343063 GATCTGCTTTCTTCGATCTACTTCACCACCAATAT-GGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * ** *
8343107 GATCTGC-ATCTTCGATCTACTTCACGCTAATGCATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * *
8343150 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
8343195 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
8343238 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* *
8343282 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * ** *
8343327 GATCTGC-ATCTTCGATCTACTTCACGCTAATGCATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * ** *
8343370 GATCTGCT-TCTTCGATCTACTTCACGCTAATGCATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * *
8343413 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
8343458 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
8343501 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
*
8343545 GATCTGCTTTCTTCGATCTACTTCACCACCAATAT-GGTAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGG-AAGACAA
* *
8343590 GATCTGC-ATCTTCGATCTACTT----CC-GTATCATGAAG--AA
1 GATCTGCTATCTTCGATCTACTTCACACCAATAT-AGGAAGACAA
* * ** *
8343627 GA-CTGCT-TC-TCGATCTACTTCACGCTAATGCATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * *
8343668 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
8343713 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
8343756 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
8343800 GATCT
1 GATCT
8343805 ACTTTAATGA
Statistics
Matches: 677, Mismatches: 115, Indels: 74
0.78 0.13 0.09
Matches are distributed among these distances:
35 11 0.02
36 6 0.01
37 4 0.01
38 3 0.00
39 12 0.02
40 2 0.00
41 4 0.01
42 14 0.02
43 178 0.26
44 329 0.49
45 114 0.17
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
Found at i:8343277 original size:132 final size:132
Alignment explanation
Indices: 8343019--8343809 Score: 1110
Period size: 132 Copynumber: 6.1 Consensus size: 132
8343009 AGGAAGATAG
* * * * *** * *
8343019 GATCTGATATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
* * * * * *
8343083 CTTCACCACCAATAT-GGAAGACAAGATCTG-CATCTTCGATCTACTTCACGCTAATGCATGAAG
65 CTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAG
8343146 ACAA
129 ACAA
8343150 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
8343215 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
8343280 AA
131 AA
* *
8343282 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
** * * * * * *
8343347 TT-C-ACGCTAATGCATGAAGACAAGATCTGCT-TCTTCGATCTACTTCACGCTAATGCATGAAG
66 TTCCTAC-C-AATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAG
8343409 ACAA
129 ACAA
*
8343413 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
8343478 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
8343543 AA
131 AA
* * *
8343545 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGTAAGACAAGATCTGCATCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * *
8343610 TTCCGTATC---AT--GAAGA-A-GA-CTGCT-TC-TCGATCTACTTCACGCTAATGCATGAAGA
66 TTCC-TACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
8343665 CAA
130 CAA
*
8343668 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
8343733 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
8343798 AA
131 AA
*
8343800 GATCTACTTT
1 GATCTGCTTT
8343810 AATGACTTCA
Statistics
Matches: 588, Mismatches: 53, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
122 3 0.01
123 95 0.16
124 2 0.00
125 6 0.01
126 2 0.00
127 6 0.01
128 6 0.01
129 2 0.00
130 17 0.03
131 167 0.28
132 277 0.47
133 5 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (132 bp):
GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:8343399 original size:263 final size:262
Alignment explanation
Indices: 8343019--8343809 Score: 1366
Period size: 263 Copynumber: 3.0 Consensus size: 262
8343009 AGGAAGATAG
* * * *** *
8343019 GATCTGATATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTA
* * *
8343083 CTTCACCACCAAT-ATGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCTAATGCATGAAGA
65 CTTCA-CGCTAATCAT-GAAGACAAGATCTGCTTCTTCGATCTACTTCACGCTAATGCATGAAGA
*
8343147 CAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATC
128 CAAGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATC
8343212 CACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAA
193 CACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAA
8343277 GACAA
258 GACAA
8343282 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
8343347 TTCACGCTAATGCATGAAGACAAGATCTGCTTCTTCGATCTACTTCACGCTAATGCATGAAGACA
66 TTCACGCTAAT-CATGAAGACAAGATCTGCTTCTTCGATCTACTTCACGCTAATGCATGAAGACA
8343412 AGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA
130 AGATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCA
8343477 CTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
195 CTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
8343542 CAA
260 CAA
*
8343545 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGTAAGACAAGATCTGCATCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
8343610 TTC-CG-T-ATCATGAAG--AAGA-CTGCTTC-TCGATCTACTTCACGCTAATGCATGAAGACAA
66 TTCACGCTAATCATGAAGACAAGATCTGCTTCTTCGATCTACTTCACGCTAATGCATGAAGACAA
8343668 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
131 GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
8343733 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
196 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
8343798 AA
261 AA
*
8343800 GATCTACTTT
1 GATCTGCTTT
8343810 AATGACTTCA
Statistics
Matches: 512, Mismatches: 13, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
255 173 0.34
256 7 0.01
257 4 0.01
259 7 0.01
260 2 0.00
261 1 0.00
262 7 0.01
263 287 0.56
264 24 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (262 bp):
GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
TTCACGCTAATCATGAAGACAAGATCTGCTTCTTCGATCTACTTCACGCTAATGCATGAAGACAA
GATCTGCTTTCTTCAATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:8360315 original size:29 final size:29
Alignment explanation
Indices: 8360257--8360313 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
8360247 TCCGAGCCTT
*
8360257 GGGGAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAATGTAATTATGAAAAAGTTTA
* *
8360286 GGGGTAAAATTGTAATTTTGAAAAAGTT
1 GGGG-AAAAATGTAATTATGAAAAAGTT
8360314 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (29 bp):
GGGGAAAAATGTAATTATGAAAAAGTTTA
Found at i:8360543 original size:13 final size:13
Alignment explanation
Indices: 8360525--8360556 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8360515 TTTCCAGCAA
8360525 TTATGAATTTATT
1 TTATGAATTTATT
8360538 TTATGAATTTATT
1 TTATGAATTTATT
*
8360551 TGATGA
1 TTATGA
8360557 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8360781 original size:50 final size:50
Alignment explanation
Indices: 8360651--8360892 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
8360641 ATTTGGGTAA
* * *
8360651 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* * *
8360707 AGAGGTCCCCTGTAAGACCATGTCTAGGACATGACATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8360757 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8360807 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
8360857 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8360893 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 89 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 37 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8360845 original size:100 final size:103
Alignment explanation
Indices: 8360651--8360900 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
8360641 ATTTGGGTAA
8360651 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
8360716 CTGTAAGACCATGTCTAGGACATGACATGGGCACCGA-GACG
63 CTATAAGACCATGTCTAGGACATGACATGGGCACC-ATCACG
* * *
8360757 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
* *
8360819 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTAGGACATGACATGGGCACCATCACG
* *
8360857 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8360901 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 39 0.30
105 2 0.02
106 40 0.31
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTAGGACATGACATGGGCACCATCACG
Found at i:8373172 original size:20 final size:21
Alignment explanation
Indices: 8373147--8373186 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8373137 CTACCCTACT
8373147 CTACTTCA-ATTTAAT-TTTTG
1 CTACTT-ATATTTAATATTTTG
8373167 CTACTTATATTTAATATTTT
1 CTACTTATATTTAATATTTT
8373187 TAAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 13 0.72
21 4 0.22
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
CTACTTATATTTAATATTTTG
Found at i:8379410 original size:38 final size:38
Alignment explanation
Indices: 8379368--8379443 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
8379358 TAATGAGTCA
* *
8379368 ATAACCATTTTCATGGTGTCACTCCATAGAGTCTGTAG
1 ATAACCATTTTCATGGTGTCACTCCATAAAGCCTGTAG
* *
8379406 ATAACCATTTTCATGTTGTCATTCCATAAAGCCTGTAG
1 ATAACCATTTTCATGGTGTCACTCCATAAAGCCTGTAG
8379444 GTTATTTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (38 bp):
ATAACCATTTTCATGGTGTCACTCCATAAAGCCTGTAG
Found at i:8382763 original size:22 final size:23
Alignment explanation
Indices: 8382721--8382763 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8382711 AAATAAAGTG
* *
8382721 TAAAATCATTTTAATATATAAAA
1 TAAAATCATTATAATAGATAAAA
8382744 TAAAAT-ATTATAATAGATAA
1 TAAAATCATTATAATAGATAA
8382764 CTAAATTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
TAAAATCATTATAATAGATAAAA
Found at i:8386056 original size:18 final size:18
Alignment explanation
Indices: 8386033--8386075 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
8386023 TGATGGGTCA
8386033 TTTCCTTCTCCTTCTCCT
1 TTTCCTTCTCCTTCTCCT
8386051 TTTCCTTCTCCTTCTCCT
1 TTTCCTTCTCCTTCTCCT
8386069 TTTCCTT
1 TTTCCTT
8386076 TACCTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTCCTTCTCCTTCTCCT
Found at i:8386076 original size:6 final size:6
Alignment explanation
Indices: 8386035--8386075 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
8386025 ATGGGTCATT
* *
8386035 TCCTTC TCCTTC TCCTTT TCCTTC TCCTTC TCCTTT TCCTT
1 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC TCCTT
8386076 TACCTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (6 bp):
TCCTTC
Found at i:8386704 original size:31 final size:31
Alignment explanation
Indices: 8386655--8386715 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
8386645 CTAAAGTTTA
8386655 TTTTGGTCCAATTAGGTACCTGAACTTGGCC
1 TTTTGGTCCAATTAGGTACCTGAACTTGGCC
* *
8386686 TTTTGGTTCGAATT-GGTACTTGAACTTGGC
1 TTTTGG-TCCAATTAGGTACCTGAACTTGGC
8386716 TTCGGTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 21 0.78
32 6 0.22
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (31 bp):
TTTTGGTCCAATTAGGTACCTGAACTTGGCC
Found at i:8390143 original size:19 final size:20
Alignment explanation
Indices: 8390094--8390146 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
8390084 TGATGTTGGT
8390094 GATATTTTTATTAATTAATTA
1 GATA-TTTTATTAATTAATTA
** *
8390115 GATA-AATATTATTTAATTA
1 GATATTTTATTAATTAATTA
8390134 -ATATTTTATTAAT
1 GATATTTTATTAAT
8390147 ATTTTTAGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
18 3 0.12
19 18 0.72
21 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (20 bp):
GATATTTTATTAATTAATTA
Found at i:8390151 original size:11 final size:11
Alignment explanation
Indices: 8390124--8390167 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
8390114 AGATAAATAT
*
8390124 TATTTAATTAA
1 TATTTTATTAA
8390135 TATTTTATTAA
1 TATTTTATTAA
* *
8390146 TATTTTTAGTAT
1 TA-TTTTATTAA
8390158 TATTTTATTA
1 TATTTTATTA
8390168 CTAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:8405440 original size:11 final size:11
Alignment explanation
Indices: 8405424--8405476 Score: 56
Period size: 11 Copynumber: 4.7 Consensus size: 11
8405414 AAAAAGTTAC
8405424 AATAAATAAAA
1 AATAAATAAAA
8405435 AATAAA-AAAA
1 AATAAATAAAA
8405445 ATATTAAATAATAA
1 A-A-TAAATAA-AA
*
8405459 AAT-AATATAA
1 AATAAATAAAA
8405469 AATAAATA
1 AATAAATA
8405477 TTTTTAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
10 10 0.28
11 15 0.42
12 5 0.14
13 3 0.08
14 3 0.08
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
AATAAATAAAA
Found at i:8405465 original size:18 final size:16
Alignment explanation
Indices: 8405427--8405474 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
8405417 AAGTTACAAT
*
8405427 AAATAAAAAATAAAAA
1 AAATATAAAATAAAAA
*
8405443 AAATATTAAATAATAAA
1 AAATATAAAATAA-AAA
8405460 ATAATATAAAATAAA
1 A-AATATAAAATAAA
8405475 TATTTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 11 0.41
17 5 0.19
18 11 0.41
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATATAAAATAAAAA
Found at i:8426667 original size:23 final size:23
Alignment explanation
Indices: 8426623--8426670 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
8426613 AGAATTTTAA
8426623 TAAATGAAAAATATATAAAAATAT
1 TAAATGAAAAATATAT-AAAATAT
*
8426647 TAAATTAAAAATCATAT-AAATAT
1 TAAATGAAAAAT-ATATAAAATAT
8426670 T
1 T
8426671 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 11 0.50
25 4 0.18
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
TAAATGAAAAATATATAAAATAT
Found at i:8427266 original size:20 final size:21
Alignment explanation
Indices: 8427242--8427311 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 21
8427232 TCTAGAATCA
8427242 TAAAAAACATATAAAAATTA-
1 TAAAAAACATATAAAAATTAC
8427262 TAAAAAAAAACA-ATAAAAATTAC
1 T---AAAAAACATATAAAAATTAC
* *
8427285 T-AAAAACGATA-AAAATTTAT
1 TAAAAAAC-ATATAAAAATTAC
8427305 TAAAAAA
1 TAAAAAA
8427312 TCATTTGTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
19 6 0.15
20 10 0.24
21 6 0.15
22 10 0.24
23 9 0.22
ACGTcount: A:0.70, C:0.06, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAAAAACATATAAAAATTAC
Found at i:8427277 original size:22 final size:24
Alignment explanation
Indices: 8427243--8427290 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
8427233 CTAGAATCAT
8427243 AAAAAACATATAAAAATTA-TAAA
1 AAAAAACATATAAAAATTACTAAA
8427266 AAAAAACA-ATAAAAATTACTAAA
1 AAAAAACATATAAAAATTACTAAA
8427289 AA
1 AA
8427291 CGATAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (24 bp):
AAAAAACATATAAAAATTACTAAA
Done.