Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 26 of 199
Found at i:8427311 original size:22 final size:20
Alignment explanation
Indices: 8427242--8427311 Score: 54
Period size: 22 Copynumber: 3.4 Consensus size: 20
8427232 TCTAGAATCA
*
8427242 TAAAAAACATATAAAAATTAT
1 TAAAAAA-ACATAAAAATTAT
* *
8427263 AAAAAAAAACAATAAAAATTAC
1 -TAAAAAAAC-ATAAAAATTAT
8427285 T--AAAAACGATAAAAATTTAT
1 TAAAAAAAC-ATAAAAA-TTAT
8427305 TAAAAAA
1 TAAAAAA
8427312 TCATTTGTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
19 13 0.34
20 4 0.11
21 1 0.03
22 20 0.53
ACGTcount: A:0.70, C:0.06, G:0.01, T:0.23
Consensus pattern (20 bp):
TAAAAAAACATAAAAATTAT
Found at i:8427341 original size:24 final size:24
Alignment explanation
Indices: 8427296--8427341 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
8427286 AAAAACGATA
* *
8427296 AAAATTTATTAAAAAATCATTTGT
1 AAAATATATTAAAAAATAATTTGT
* *
8427320 AAAATATATTAGAAATTAATTT
1 AAAATATATTAAAAAATAATTT
8427342 AAAACCATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
AAAATATATTAAAAAATAATTTGT
Found at i:8427595 original size:19 final size:21
Alignment explanation
Indices: 8427550--8427595 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
8427540 TAAAATAATA
*
8427550 AATTATTTTTATAGATTTTAT
1 AATTAATTTTATAGATTTTAT
8427571 AA--AATTTTAT-GATTTT-T
1 AATTAATTTTATAGATTTTAT
8427588 AATTAATT
1 AATTAATT
8427596 CATAATGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.14
18 6 0.27
19 11 0.50
21 2 0.09
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
AATTAATTTTATAGATTTTAT
Found at i:8428511 original size:21 final size:21
Alignment explanation
Indices: 8428482--8428521 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
8428472 TTTTTTTTTA
8428482 TTTTTTTA-TTTTAAAATACT
1 TTTTTTTATTTTTAAAATACT
8428502 TTTTTATTATTTTTAAAATA
1 TTTTT-TTATTTTTAAAATA
8428522 AATTTTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTTTATTTTTAAAATACT
Found at i:8428527 original size:21 final size:21
Alignment explanation
Indices: 8428481--8428527 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
8428471 ATTTTTTTTT
* *
8428481 ATTTTTTTATTTTAAAATACT
1 ATTTTATTATTTTAAAATACA
*
8428502 TTTTTATTATTTTTAAAATA-A
1 ATTTTATTA-TTTTAAAATACA
8428523 ATTTT
1 ATTTT
8428528 TGGTGTTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTATTATTTTAAAATACA
Found at i:8428527 original size:22 final size:20
Alignment explanation
Indices: 8428481--8428528 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
8428471 ATTTTTTTTT
*
8428481 ATTTTTTTATTTTAAAATAC
1 ATTTTTTTATTTTAAAATAA
*
8428501 TTTTTTATTATTTTTAAAATAA
1 ATTTTT-TTA-TTTTAAAATAA
8428523 ATTTTT
1 ATTTTT
8428529 GGTGTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 5 0.22
21 3 0.13
22 15 0.65
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTTTTATTTTAAAATAA
Found at i:8431696 original size:30 final size:30
Alignment explanation
Indices: 8431624--8431696 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
8431614 AAAAAAATGA
*
8431624 CACACAGCCGTGTAGTTAGACCGTGTGTGT
1 CACACAGCCGTGTAGTCAGACCGTGTGTGT
* * *
8431654 CACATAGTCGTGTAGTCCGACCGTGTGTGT
1 CACACAGCCGTGTAGTCAGACCGTGTGTGT
* *
8431684 CATACGGCCGTGT
1 CACACAGCCGTGT
8431697 GATAGCCCGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (30 bp):
CACACAGCCGTGTAGTCAGACCGTGTGTGT
Found at i:8431833 original size:21 final size:19
Alignment explanation
Indices: 8431792--8431834 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
8431782 CCAATTTCAC
* *
8431792 ACACACTCAAAAGCCCTAA
1 ACACACTCAAAAGACCAAA
8431811 ACACACTTCAACAAGACCAAA
1 ACACAC-TCAA-AAGACCAAA
8431832 ACA
1 ACA
8431835 TGCTAAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 4 0.20
21 10 0.50
ACGTcount: A:0.51, C:0.35, G:0.05, T:0.09
Consensus pattern (19 bp):
ACACACTCAAAAGACCAAA
Found at i:8434443 original size:17 final size:17
Alignment explanation
Indices: 8434416--8434476 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
8434406 TGGTATATGG
8434416 ATTTGTTTAAA-AATATAT
1 ATTT-TTTAAATAAT-TAT
8434434 ATTTTTTAAATTAATTTAT
1 ATTTTTTAAA-TAA-TTAT
* *
8434453 ATTTTTAAAATAATTTT
1 ATTTTTTAAATAATTAT
8434470 ATTTTTT
1 ATTTTTT
8434477 TAATTTTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 15 0.41
18 7 0.19
19 14 0.38
20 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
ATTTTTTAAATAATTAT
Found at i:8434455 original size:19 final size:19
Alignment explanation
Indices: 8434431--8434481 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
8434421 TTTAAAAATA
8434431 TATATTTTTTAAATTAATT
1 TATATTTTTTAAATTAATT
*
8434450 TATA-TTTTTAAAATAATT
1 TATATTTTTTAAATTAATT
*
8434468 T-TATTTTTTTAATT
1 TATATTTTTTAAATT
8434482 TTGTCTACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 2 0.07
18 22 0.79
19 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TATATTTTTTAAATTAATT
Found at i:8439896 original size:12 final size:12
Alignment explanation
Indices: 8439879--8439903 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8439869 GGCGAGAATC
8439879 GAATTTTGTTGG
1 GAATTTTGTTGG
8439891 GAATTTTGTTGG
1 GAATTTTGTTGG
8439903 G
1 G
8439904 TTAGCATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.48
Consensus pattern (12 bp):
GAATTTTGTTGG
Found at i:8441127 original size:36 final size:34
Alignment explanation
Indices: 8441072--8441301 Score: 127
Period size: 34 Copynumber: 7.0 Consensus size: 34
8441062 TTATTATTAA
8441072 ATATAATTTAATAAAAATATATAATTTAATAAAAT
1 ATATAATTTAAT-AAAATATATAATTTAATAAAAT
* *
8441107 ATATGAATTTAATCATAATATATAA--TACTATAAA-
1 ATAT-AATTTAAT-AAAATATATAATTTAATA-AAAT
* *
8441141 ATATAA-TT--TAAAATA-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAATATATAATTTAATAAAAT
8441167 ATATAATTTAATAAAAATATATAATTTAATAAAAT
1 ATATAATTTAAT-AAAATATATAATTTAATAAAAT
* * * *
8441202 ATATGAATTTACTAAAAT-CATAATAT-ATAATACT
1 ATAT-AATTTAATAAAATATATAATTTAATAA-AAT
* * * *
8441236 ATAAAATATAATTTAAAATA-ATTA-TT-AT-TAA-
1 ATATAATTTAA--TAAAATATATAATTTAATAAAAT
*
8441267 ATATAATTTAACAAAAATATATAATTTAATAAAAT
1 ATATAATTTAA-TAAAATATATAATTTAATAAAAT
8441302 TCTTAGTATT
Statistics
Matches: 147, Mismatches: 26, Indels: 44
0.68 0.12 0.20
Matches are distributed among these distances:
26 8 0.05
27 2 0.01
28 4 0.03
29 7 0.05
30 13 0.09
31 15 0.10
32 7 0.05
33 15 0.10
34 26 0.18
35 25 0.17
36 25 0.17
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (34 bp):
ATATAATTTAATAAAATATATAATTTAATAAAAT
Found at i:8441164 original size:95 final size:98
Alignment explanation
Indices: 8441052--8441301 Score: 443
Period size: 100 Copynumber: 2.6 Consensus size: 98
8441042 TTAATCATAT
*
8441052 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAA-TT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
8441116 -T-AATCATAATATATAATACTATAAAATATAA
66 ATAAATCATAATATATAATACTATAAAATATAA
8441147 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
8441212 ACTAAAATCATAATATATAATACTATAAAATATAA
66 A-T-AAATCATAATATATAATACTATAAAATATAA
*
8441247 TTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAAT
8441302 TCTTAGTATT
Statistics
Matches: 148, Mismatches: 2, Indels: 5
0.95 0.01 0.03
Matches are distributed among these distances:
95 61 0.41
96 2 0.01
98 1 0.01
100 84 0.57
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (98 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
ATAAATCATAATATATAATACTATAAAATATAA
Found at i:8441240 original size:41 final size:40
Alignment explanation
Indices: 8441182--8441365 Score: 100
Period size: 41 Copynumber: 4.6 Consensus size: 40
8441172 ATTTAATAAA
*
8441182 AATATATAAT-TTAATAAAATATATGAATTTACTAAAATCAT
1 AATATATAATACT-ATAAAATATAT-AATTTACTAAAATCAT
* *
8441223 AATATATAATACTAT-AAA-ATATAATTTA-AAATAATTATT
1 AATATATAATACTATAAAATATATAATTTACTAA-AATCA-T
* * *
8441262 ATTAAATATAATTTAAC-A-AAAATATATAATTTAATAAAATTCTT
1 A--ATATATAA--T-ACTATAAAATATATAATTTACTAAAA-TCAT
* ***
8441306 AGTAT-TAA-A-TAT-TCTTATATGAATTTACTAAAATCAT
1 AATATATAATACTATAAAATATAT-AATTTACTAAAATCAT
*
8441343 AATATATAAAACTATAAAATATA
1 AATATATAATACTATAAAATATA
8441366 ATTTAAAATA
Statistics
Matches: 106, Mismatches: 18, Indels: 38
0.65 0.11 0.23
Matches are distributed among these distances:
37 16 0.15
38 24 0.23
39 7 0.07
40 6 0.06
41 26 0.25
42 3 0.03
43 5 0.05
44 16 0.15
45 3 0.03
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.40
Consensus pattern (40 bp):
AATATATAATACTATAAAATATATAATTTACTAAAATCAT
Found at i:8441360 original size:61 final size:61
Alignment explanation
Indices: 8441201--8441383 Score: 173
Period size: 59 Copynumber: 3.0 Consensus size: 61
8441191 TTTAATAAAA
*
8441201 TATATGAATTTACTAAAATCATAATATATAATACTATAAAA-TATAATTTAAAATAATTAT
1 TATATGAATTTACTAAAATCATAATATATAAAACTATAAAATTATAATTTAAAATAATTAT
* * * ** * ** * * *
8441261 TAT-TAAATATAATTTAA-CA-AAAATATATAATTTAATAAAATTCTTAGTATT-AAAT-ATTCT
1 TATATGAATTTACTAAAATCATAATATATA-AAACT-ATAAAATT-ATAAT-TTAAAATAATTAT
8441321 TATATGAATTTACTAAAATCATAATATATAAAACTATAAAA-TATAATTTAAAATAATTAT
1 TATATGAATTTACTAAAATCATAATATATAAAACTATAAAATTATAATTTAAAATAATTAT
8441381 TAT
1 TAT
8441384 TAAATATAAT
Statistics
Matches: 90, Mismatches: 23, Indels: 20
0.68 0.17 0.15
Matches are distributed among these distances:
57 7 0.08
58 6 0.07
59 22 0.24
60 19 0.21
61 22 0.24
62 7 0.08
63 7 0.08
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (61 bp):
TATATGAATTTACTAAAATCATAATATATAAAACTATAAAATTATAATTTAAAATAATTAT
Found at i:8441374 original size:12 final size:12
Alignment explanation
Indices: 8441357--8441408 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
8441347 TATAAAACTA
8441357 TAAAATATAATT
1 TAAAATATAATT
*
8441369 TAAAATAATTATT
1 TAAAAT-ATAATT
*
8441382 ATTAAATATAATT
1 -TAAAATATAATT
* *
8441395 TATAATATATTT
1 TAAAATATAATT
8441407 TA
1 TA
8441409 TTATTTCTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 17 0.53
13 10 0.31
14 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:8445036 original size:14 final size:14
Alignment explanation
Indices: 8445017--8445068 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
8445007 TATATATTTG
8445017 TAATATTATTAAAA
1 TAATATTATTAAAA
* *
8445031 TAATATTTTTAAAT
1 TAATATTATTAAAA
*
8445045 TAA-ATTATTTAAA
1 TAATATTATTAAAA
*
8445058 -AATATTTTTAA
1 TAATATTATTAA
8445069 TTAATGCGTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
12 2 0.07
13 13 0.43
14 15 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTATTAAAA
Found at i:8445063 original size:26 final size:26
Alignment explanation
Indices: 8445021--8445072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8445011 TATTTGTAAT
8445021 ATTATTAAAATAATATTTTTAAATTAA
1 ATTATTAAAATAATATTTTT-AATTAA
*
8445048 ATTATTTAAA-AATATTTTTAATTAA
1 ATTATTAAAATAATATTTTTAATTAA
8445073 TGCGTTGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.25
26 9 0.38
27 9 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTTAATTAA
Found at i:8459880 original size:12 final size:11
Alignment explanation
Indices: 8459862--8459895 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
8459852 ATATGCCCAA
8459862 AAAAATTATTT
1 AAAAATTATTT
8459873 ATAAAATTATTT
1 A-AAAATTATTT
8459885 AAGAAATTATT
1 AA-AAATTATT
8459896 ATTTTTTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.10
12 19 0.90
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (11 bp):
AAAAATTATTT
Found at i:8463664 original size:31 final size:31
Alignment explanation
Indices: 8463569--8463664 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
8463559 GGCAAATTAC
*
8463569 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
*
8463600 AAGAGTAATTGAATCCTAATAAAAAATCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
8463632 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
8463663 AA
1 AA
8463665 ATTATCTAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 32 0.52
32 29 0.48
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:8469314 original size:45 final size:45
Alignment explanation
Indices: 8469194--8469314 Score: 194
Period size: 43 Copynumber: 2.7 Consensus size: 45
8469184 GAGAGGTAGG
8469194 CAAC-TTTTTTTTGCGCTGTTTGCTTTTTTTTTAAAGATTTTTCT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTTAAAGATTTTTCT
8469238 CAACTCTTTTTTTTTGCGCTGTTTGCTTTTTTTTT--AGATTTTTCT
1 CAA--CTTTTTTTTTGCGCTGTTTGCTTTTTTTTTAAAGATTTTTCT
*
8469283 CAACTTTTTTTTTGCGCTTTTTGCTTTTTTTT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTT
8469315 ATTAACTAAT
Statistics
Matches: 73, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
43 28 0.38
44 3 0.04
45 13 0.18
46 1 0.01
47 28 0.38
ACGTcount: A:0.10, C:0.15, G:0.11, T:0.64
Consensus pattern (45 bp):
CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTTAAAGATTTTTCT
Found at i:8469921 original size:31 final size:31
Alignment explanation
Indices: 8469828--8469923 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
8469818 GGCAAATTAC
*
8469828 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
8469859 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
8469891 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
8469922 AA
1 AA
8469924 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:8470975 original size:206 final size:206
Alignment explanation
Indices: 8470621--8471031 Score: 804
Period size: 206 Copynumber: 2.0 Consensus size: 206
8470611 AAAATTAATT
*
8470621 ATCTCATTGTACAGAATTCGGATGATGTTTCCGTTTATTTATTATGAAAATATACTCATCAAGGA
1 ATCTCATTGTACAGAATTCGGATGATGTTTCCGTTTATTTATTATGAAAATAGACTCATCAAGGA
8470686 TTCTAACCATATAAAGTATAACTCATAATAATTTTTGTACAATTTTTAATAATTTTTCCAAAGTC
66 TTCTAACCATATAAAGTATAACTCATAATAATTTTTGTACAATTTTTAATAATTTTTCCAAAGTC
8470751 AGAACAGGGGAACCAGAATTCATTCTGACATTGTCTCACAAAACCTATTATATCTCATGATTTAC
131 AGAACAGGGGAACCAGAATTCATTCTGACATTGTCTCACAAAACCTATTATATCTCATGATTTAC
8470816 AATTCCATTGA
196 AATTCCATTGA
8470827 ATCTCATTGTACAGAATTCGGATGATGTTTCCGTTTATTTATTATGAAAATAGACTCATCAAGGA
1 ATCTCATTGTACAGAATTCGGATGATGTTTCCGTTTATTTATTATGAAAATAGACTCATCAAGGA
*
8470892 TTCTAACCATATAAAGTATAACTCATAATAATTTTTGTACAATTTTTAATGATTTTTCCAAAGTC
66 TTCTAACCATATAAAGTATAACTCATAATAATTTTTGTACAATTTTTAATAATTTTTCCAAAGTC
8470957 AGAACAGGGGAACCAGAATTCATTCTGACATTGTCTCACAAAACCTATTATATCTCATGATTTAC
131 AGAACAGGGGAACCAGAATTCATTCTGACATTGTCTCACAAAACCTATTATATCTCATGATTTAC
8471022 AATTCCATTG
196 AATTCCATTG
8471032 CTTACACCAT
Statistics
Matches: 203, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
206 203 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (206 bp):
ATCTCATTGTACAGAATTCGGATGATGTTTCCGTTTATTTATTATGAAAATAGACTCATCAAGGA
TTCTAACCATATAAAGTATAACTCATAATAATTTTTGTACAATTTTTAATAATTTTTCCAAAGTC
AGAACAGGGGAACCAGAATTCATTCTGACATTGTCTCACAAAACCTATTATATCTCATGATTTAC
AATTCCATTGA
Found at i:8475090 original size:54 final size:54
Alignment explanation
Indices: 8474913--8475116 Score: 228
Period size: 54 Copynumber: 3.8 Consensus size: 54
8474903 TCCTTTGAAT
** ** * * *
8474913 TTGGCTGTTGCAAAAGATGATGTTACACTAGCAGCTAATGTTTGTCCTTCGAAC
1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC
* ** * *
8474967 TTGTCTGTCACAAAAGATGATGTTATACGAACAGCTAATGTTTCTCCTTCAAAC
1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC
* * *
8475021 TTGGCTGACACAAAAGACAATGTTACACTAGCAGCTAATGCTTCTCCTTCAAAC
1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC
* ** * *
8475075 TTGGCAGTCGTAAAAGACAATGCTACACTAACAACTAATGTT
1 TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTT
8475117 AAAGAGAACA
Statistics
Matches: 126, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (54 bp):
TTGGCTGTCACAAAAGACAATGTTACACTAACAGCTAATGTTTCTCCTTCAAAC
Found at i:8484639 original size:120 final size:120
Alignment explanation
Indices: 8484482--8485108 Score: 1060
Period size: 120 Copynumber: 5.2 Consensus size: 120
8484472 TATATTTAGA
* * * * *
8484482 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGT
* * *
8484547 AAATTCATATAAAAATATTTAA-TATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
* * * *
8484603 AAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGT
* * *
8484667 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
8484723 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
*
8484788 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
8484843 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
8484908 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
*
8484963 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
8485028 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
8485083 AAAATATATTTAATAATAATTATGTT
1 AAAATATATTTAATAATAATTATGTT
8485109 TAAATATGAT
Statistics
Matches: 489, Mismatches: 14, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
119 5 0.01
120 478 0.98
121 6 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
Found at i:8484965 original size:18 final size:17
Alignment explanation
Indices: 8484937--8484971 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8484927 ATTATTAAGA
*
8484937 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8484954 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8484972 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8485085 original size:18 final size:17
Alignment explanation
Indices: 8485057--8485091 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8485047 ATTATTAAGA
*
8485057 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8485074 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8485092 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8485304 original size:44 final size:45
Alignment explanation
Indices: 8485255--8485345 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
8485245 ACCTCTATTC
* * *
8485255 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
8485299 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
8485344 CA
1 CA
8485346 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:8485347 original size:16 final size:16
Alignment explanation
Indices: 8485326--8485394 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
8485316 GATTAGCTAT
8485326 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8485342 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
8485359 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8485375 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8485391 TACA
1 TACA
8485395 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8485368 original size:33 final size:32
Alignment explanation
Indices: 8485326--8485394 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
8485316 GATTAGCTAT
8485326 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
8485359 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
8485391 TACA
1 TACA
8485395 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:8491636 original size:20 final size:20
Alignment explanation
Indices: 8491594--8491636 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8491584 ACCATTCATC
* *
8491594 AAGGTTATTTTCTTGATTCA
1 AAGGTTATTTTCTTGAATAA
* *
8491614 AAGGTTTTTTTTTTGAATAA
1 AAGGTTATTTTCTTGAATAA
8491634 AAG
1 AAG
8491637 CATTATTGGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (20 bp):
AAGGTTATTTTCTTGAATAA
Found at i:8494026 original size:14 final size:14
Alignment explanation
Indices: 8493981--8494038 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
8493971 CATTATTAGT
*
8493981 TTAATAAATAATAT
1 TTAATAAATAATAA
* *
8493995 TATAATAATTAA-AT
1 T-TAATAAATAATAA
8494009 TTAAATAAA-AATAA
1 TT-AATAAATAATAA
8494023 TTAATAAATAATAA
1 TTAATAAATAATAA
8494037 TT
1 TT
8494039 GGGGATATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
13 9 0.24
14 19 0.51
15 9 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TTAATAAATAATAA
Found at i:8511807 original size:4 final size:4
Alignment explanation
Indices: 8511798--8511853 Score: 94
Period size: 4 Copynumber: 14.0 Consensus size: 4
8511788 TTTCTCTAAG
* *
8511798 CATA CATA CATA CATA CATA CATA CACA CATA CATA CATA CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8511846 CATA CATA
1 CATA CATA
8511854 TGTCATATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:8516159 original size:42 final size:42
Alignment explanation
Indices: 8516092--8516201 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
8516082 TTGTGGCGTT
*
8516092 AGGTCATGTTCTTTAGC-AGCACTTTTAT-AAAAACGCCGCTAA
1 AGGTCATGTTCTTTAGCGA-CACTTTT-TCAAAAACGCCACTAA
* *
8516134 AGGTCATGTTCTTTAGCGACGCTTTTTCCACAAACGCCACTAA
1 AGGTCATGTTCTTTAGCGACACTTTTT-CAAAAACGCCACTAA
*
8516177 AAGTCATGTTCTTTAGCGACACTTT
1 AGGTCATGTTCTTTAGCGACACTTT
8516202 ACCCACAAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 1 0.02
42 23 0.38
43 36 0.60
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (42 bp):
AGGTCATGTTCTTTAGCGACACTTTTTCAAAAACGCCACTAA
Found at i:8516183 original size:43 final size:43
Alignment explanation
Indices: 8516122--8516214 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
8516112 ACTTTTATAA
* * * **
8516122 AAACGCCGCTAAAGGTCATGTTCTTTAGCGACGCTTTTTCCAC
1 AAACGCCACTAAAAGTCATGTTCTTTAGCGACACTTTACCCAC
8516165 AAACGCCACTAAAAGTCATGTTCTTTAGCGACACTTTACCCAC
1 AAACGCCACTAAAAGTCATGTTCTTTAGCGACACTTTACCCAC
8516208 AAACGCC
1 AAACGCC
8516215 GCTATTGTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (43 bp):
AAACGCCACTAAAAGTCATGTTCTTTAGCGACACTTTACCCAC
Found at i:8518609 original size:84 final size:85
Alignment explanation
Indices: 8518468--8518681 Score: 360
Period size: 84 Copynumber: 2.5 Consensus size: 85
8518458 AATGGTTACC
*
8518468 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGACGCC-ACATTGGCAAACATTAATT
1 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGACATTGGCAAACATTAATT
8518532 CACTCTTGCGGCGTTTTATT
66 CACTCTTGCGGCGTTTTATT
8518552 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGA-ATTGGCAAACATTAATT
1 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGACATTGGCAAACATTAATT
* *
8518616 CACTCTTGTGGCGTTTTCTT
66 CACTCTTGCGGCGTTTTATT
* * *
8518636 AAAAAACGCCACTATAAGATTTTATTCCACTAGAGAAACGGTGCCG
1 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCG
8518682 CTTTGCCAAA
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
84 122 0.99
85 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (85 bp):
AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGACATTGGCAAACATTAATT
CACTCTTGCGGCGTTTTATT
Found at i:8518731 original size:84 final size:85
Alignment explanation
Indices: 8518468--8518725 Score: 351
Period size: 84 Copynumber: 3.1 Consensus size: 85
8518458 AATGGTTACC
* * *
8518468 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGACGCCACATTGGCAAACATTAATTC
1 AAAAAACACCACTATAAGATTTTATTCCACTAGAGAAACGGCGCCGCATTGGCAAACATTAATTC
8518533 ACTCTTGCGGCGTTTT-ATT
66 ACTCTTGCGGCGTTTTCATT
* *
8518552 AAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGAATTGGCAAACATTAATTC
1 AAAAAACACCACTATAAGATTTTATTCCACTAGAGAAACGGCGCCGCATTGGCAAACATTAATTC
*
8518617 ACTCTTGTGGCGTTTTC-TT
66 ACTCTTGCGGCGTTTTCATT
* * * * ** *
8518636 AAAAAACGCCACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCTTTGCCAAATTTTAA-TA
1 AAAAAACACCACTATAAGATTTTATTCCACTAGAGAAACGGCGCCGCATTGGCAAACATTAATTC
* *
8518700 AATCCTTGCGGCGTTTTCACT
66 ACT-CTTGCGGCGTTTTCATT
8518721 AAAAA
1 AAAAA
8518726 CGCCACAAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
83 3 0.02
84 146 0.94
85 6 0.04
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (85 bp):
AAAAAACACCACTATAAGATTTTATTCCACTAGAGAAACGGCGCCGCATTGGCAAACATTAATTC
ACTCTTGCGGCGTTTTCATT
Found at i:8518753 original size:84 final size:83
Alignment explanation
Indices: 8518536--8518825 Score: 206
Period size: 84 Copynumber: 3.4 Consensus size: 83
8518526 TTAATTCACT
** * * * * * * **
8518536 CTTGCGGCGTTTTATTAAAAAACACCACTATAAGATTTTATTCCAGTAGAGAAACGGCGCCGAAT
1 CTTGCGGCGTTTTCCT-AAAAACGCCACAAAAAAATTTCATTCCACTAGAGAAACGGCGCCGCTT
* ** **
8518601 TGGCAAACATTAATTCACT-
65 TGACAAATTTTAAAACA-TA
* * * * * * *
8518620 CTTGTGGCGTTTTCTTAAAAAACGCCACTATAAGATTTTATTCCACTAGAGAAACGGTGCCGCTT
1 CTTGCGGCGTTTTCCT-AAAAACGCCACAAAAAAATTTCATTCCACTAGAGAAACGGCGCCGCTT
* *
8518685 TGCCAAATTTTAATAA-ATC
65 TGACAAATTTTAA-AACATA
* * * * *
8518704 CTTGCGGCGTTTTCACTAAAAACGCCACAAAAAAATTTCATTTCTCTAGATAAATGGCGCCGTTT
1 CTTGCGGCGTTTTC-CTAAAAACGCCACAAAAAAATTTCATTCCACTAGAGAAACGGCGCCGCTT
8518769 TGACAAATTTTAAAACATA
65 TGACAAATTTTAAAACATA
* ** *
8518788 ATAACGGCGTTTTCCGTAAAAACGTCACTAAAAAAATT
1 CTTGCGGCGTTTTCC-TAAAAACGCCAC-AAAAAAATT
8518826 AAACTCCTAA
Statistics
Matches: 170, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
83 4 0.02
84 156 0.92
85 10 0.06
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (83 bp):
CTTGCGGCGTTTTCCTAAAAACGCCACAAAAAAATTTCATTCCACTAGAGAAACGGCGCCGCTTT
GACAAATTTTAAAACATA
Found at i:8519235 original size:19 final size:17
Alignment explanation
Indices: 8519203--8519273 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 17
8519193 TAATCTTAAC
*
8519203 CCCTAAACCATAACCCAA
1 CCCT-AACCCTAACCCAA
*
8519221 CCCTGAATCCCTAACTCAA
1 CCCT-AA-CCCTAACCCAA
8519240 CCCCTAACCCCTAACCTCTAA
1 -CCCTAA-CCCTAACC-C-AA
8519261 CCCTTAACCCTAA
1 CCC-TAACCCTAA
8519274 TCTCTAACCC
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 6 0.14
19 18 0.42
20 14 0.33
21 5 0.12
ACGTcount: A:0.34, C:0.46, G:0.01, T:0.18
Consensus pattern (17 bp):
CCCTAACCCTAACCCAA
Found at i:8519250 original size:7 final size:7
Alignment explanation
Indices: 8519238--8519287 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
8519228 TCCCTAACTC
8519238 AACCCCT
1 AACCCCT
8519245 AACCCCT
1 AACCCCT
*
8519252 AACCTCT
1 AACCCCT
*
8519259 AACCCTT
1 AACCCCT
8519266 AA-CCCT
1 AACCCCT
* *
8519272 AATCTCT
1 AACCCCT
8519279 AACCCCT
1 AACCCCT
8519286 AA
1 AA
8519288 ACCTTATTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (7 bp):
AACCCCT
Found at i:8519260 original size:14 final size:14
Alignment explanation
Indices: 8519229--8519287 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
8519219 AACCCTGAAT
8519229 CCCTAA-CTC-AAC
1 CCCTAACCTCTAAC
*
8519241 CCCTAACCCCTAAC
1 CCCTAACCTCTAAC
*
8519255 CTCTAACC-CTTAA-
1 CCCTAACCTC-TAAC
*
8519268 CCCTAATCTCTAAC
1 CCCTAACCTCTAAC
8519282 CCCTAA
1 CCCTAA
8519288 ACCTTATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 6 0.16
13 12 0.32
14 20 0.53
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAACCTCTAAC
Found at i:8519271 original size:20 final size:20
Alignment explanation
Indices: 8519219--8519283 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
8519209 ACCATAACCC
* *
8519219 AACCCTGAATCCCTAACTC-
1 AACCCTTAACCCCTAACTCT
*
8519238 AACCCCTAACCCCTAACCTCT
1 AACCCTTAACCCCTAA-CTCT
8519259 AACCCTTAA-CCCTAATCTCT
1 AACCCTTAACCCCTAA-CTCT
8519279 AACCC
1 AACCC
8519284 CTAAACCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 13 0.33
20 18 0.46
21 8 0.21
ACGTcount: A:0.31, C:0.46, G:0.02, T:0.22
Consensus pattern (20 bp):
AACCCTTAACCCCTAACTCT
Found at i:8519271 original size:27 final size:27
Alignment explanation
Indices: 8519199--8519293 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
8519189 TCACTAATCT
*
8519199 TAACCCCTAAACCATAACCC-AA-CCC
1 TAACCCCTAAACCTTAACCCTAACCCC
* *
8519224 TGAATCCCT-AA-CTCAACCCCTAACCCC
1 T-AACCCCTAAACCTTAA-CCCTAACCCC
* * * *
8519251 TAACCTCTAACCCTTAACCCTAATCTC
1 TAACCCCTAAACCTTAACCCTAACCCC
8519278 TAACCCCTAAACCTTA
1 TAACCCCTAAACCTTA
8519294 TTTAATATAT
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
24 3 0.06
25 6 0.11
26 13 0.25
27 27 0.51
28 4 0.08
ACGTcount: A:0.34, C:0.44, G:0.01, T:0.21
Consensus pattern (27 bp):
TAACCCCTAAACCTTAACCCTAACCCC
Found at i:8519386 original size:82 final size:82
Alignment explanation
Indices: 8519277--8519432 Score: 285
Period size: 82 Copynumber: 1.9 Consensus size: 82
8519267 ACCCTAATCT
8519277 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCAT
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCAT
8519342 AACCCAACCCCAACCCC
66 AACCCAACCCCAACCCC
* * *
8519359 CTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAGTCTAAACCTTAAACCAT
1 CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCAT
8519424 AACCCAACC
66 AACCCAACC
8519433 TCGAATCCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 71 1.00
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.26
Consensus pattern (82 bp):
CTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCAT
AACCCAACCCCAACCCC
Found at i:8519443 original size:82 final size:81
Alignment explanation
Indices: 8519266--8519447 Score: 283
Period size: 82 Copynumber: 2.2 Consensus size: 81
8519256 TCTAACCCTT
* *
8519266 AACCCTAATCTCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
1 AACCCCAATCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
8519331 CCCTAAACCATAACCC
66 CCCTAAACCATAACCC
* * *
8519347 AACCCCAACCCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATTAGTCTAA
1 AACCCCAA-TCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAA
*
8519412 ACCTTAAACCATAACCC
65 ACCCTAAACCATAACCC
*
8519429 AACCTCGAATCCCTAACCC
1 AACC-CCAATCCCTAACCC
8519448 GATCCTTAAC
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
81 7 0.08
82 81 0.89
83 3 0.03
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.25
Consensus pattern (81 bp):
AACCCCAATCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAA
CCCTAAACCATAACCC
Found at i:8519523 original size:6 final size:6
Alignment explanation
Indices: 8519512--8519573 Score: 54
Period size: 6 Copynumber: 9.8 Consensus size: 6
8519502 AATTAATCTA
* * *
8519512 AACCCT AACCCT AACCCT AATCC- AATCCCA AATCCCT AACCCC AACCCCT
1 AACCCT AACCCT AACCCT AACCCT AA-CCCT AA-CCCT AACCCT AA-CCCT
8519562 AACCCTT AACCC
1 AACCC-T AACCC
8519574 CTAAACCTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
5 2 0.04
6 26 0.55
7 19 0.40
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (6 bp):
AACCCT
Found at i:8519529 original size:12 final size:12
Alignment explanation
Indices: 8519512--8519573 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 12
8519502 AATTAATCTA
8519512 AACCCTAACCCT
1 AACCCTAACCCT
*
8519524 AACCCTAATCC-
1 AACCCTAACCCT
*
8519535 AATCCCAAATCCCT
1 AA-CCCTAA-CCCT
*
8519549 AACCCCAACCCCT
1 AACCCTAA-CCCT
8519562 AACCCTTAACCC
1 AACCC-TAACCC
8519574 CTAAACCTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
11 2 0.05
12 15 0.38
13 19 0.47
14 4 0.10
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (12 bp):
AACCCTAACCCT
Found at i:8519563 original size:13 final size:14
Alignment explanation
Indices: 8519545--8519577 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8519535 AATCCCAAAT
8519545 CCCTAACCC-CAAC
1 CCCTAACCCTCAAC
*
8519558 CCCTAACCCTTAAC
1 CCCTAACCCTCAAC
8519572 CCCTAA
1 CCCTAA
8519578 ACCTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (14 bp):
CCCTAACCCTCAAC
Found at i:8519572 original size:14 final size:14
Alignment explanation
Indices: 8519545--8519583 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8519535 AATCCCAAAT
*
8519545 CCCTAACCC-CAAC
1 CCCTAACCCTTAAC
8519558 CCCTAACCCTTAAC
1 CCCTAACCCTTAAC
*
8519572 CCCTAAACCTTA
1 CCCTAACCCTTA
8519584 TTTAATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (14 bp):
CCCTAACCCTTAAC
Found at i:8519580 original size:8 final size:7
Alignment explanation
Indices: 8519545--8519577 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
8519535 AATCCCAAAT
8519545 CCCTAAC
1 CCCTAAC
8519552 CCC-AAC
1 CCCTAAC
8519558 CCCTAAC
1 CCCTAAC
*
8519565 CCTTAAC
1 CCCTAAC
8519572 CCCTAA
1 CCCTAA
8519578 ACCTTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (7 bp):
CCCTAAC
Found at i:8519596 original size:107 final size:100
Alignment explanation
Indices: 8519341--8519655 Score: 407
Period size: 101 Copynumber: 3.1 Consensus size: 100
8519331 CCCTAAACCA
*
8519341 TAACCCAACCCC-AACCCCCTAACCCCTAAACTTTATTTAATATATAAATTAAAAAACACTAATT
1 TAACCCAACCCCTAA-CCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
* * *
8519405 AGTCTAAACCTTAAACCATAACCCAACCTCGAATCCC
65 AATCTAAACCCT-AACCATAACCCAACCTCAAATCCC
* * * * *
8519442 TAACCCGATCCTTAACCCCTAACCCTTAAACCTTATTTAGTATATAAATTAAAAAACACTAATTA
1 TAACCCAACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTA
*
8519507 ATCTAAACCCTAACCCTAACCCTAATCCAATCCCAAATCCC
66 ATCTAAACCCTAACCATAACCC-AA-CC--T--CAAATCCC
*
8519548 TAACCCCAACCCCTAACCCTTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
1 TAA-CCCAACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATT
* * *
8519613 AATCTAAACCCTAAACCATAACTCGACCCCAAATCCC
65 AATCTAAACCCT-AACCATAACCCAACCTCAAATCCC
8519650 TAACCC
1 TAACCC
8519656 TTAACCATAT
Statistics
Matches: 185, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
100 10 0.05
101 70 0.38
102 15 0.08
104 1 0.01
106 12 0.06
107 68 0.37
108 9 0.05
ACGTcount: A:0.41, C:0.33, G:0.02, T:0.24
Consensus pattern (100 bp):
TAACCCAACCCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTA
ATCTAAACCCTAACCATAACCCAACCTCAAATCCC
Found at i:8520127 original size:41 final size:41
Alignment explanation
Indices: 8520069--8520180 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
8520059 ATGTTTTTGC
* * *
8520069 GGCGCTTTTTCACAAACGCCGCTTAATCCCCAAGCATTAGT
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCCCAAGCATTAGT
* **
8520110 GGCGCTTCTTT-AAAAACGCCGCTAAAGCTCTGAGCATTAGT
1 GGCGCTT-TTTCAAAAACGCCGCTAAAGCCCCAAGCATTAGT
* *
8520151 GACGCTTTTTCAAAAATGCCGCTAAAGCCC
1 GGCGCTTTTTCAAAAACGCCGCTAAAGCCC
8520181 TAAAAGGTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
40 3 0.05
41 54 0.90
42 3 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (41 bp):
GGCGCTTTTTCAAAAACGCCGCTAAAGCCCCAAGCATTAGT
Found at i:8530558 original size:20 final size:21
Alignment explanation
Indices: 8530528--8530576 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8530518 TGGGGTATTA
8530528 AATTAAATTTAATAGTAAAAT
1 AATTAAATTTAATAGTAAAAT
* *
8530549 AATT-AATTTAATATTAAATT
1 AATTAAATTTAATAGTAAAAT
*
8530569 AATAAAAT
1 AATTAAAT
8530577 AATTAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AATTAAATTTAATAGTAAAAT
Found at i:8531310 original size:17 final size:17
Alignment explanation
Indices: 8531288--8531320 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8531278 TATAAGATTT
8531288 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
8531305 TGATACCCATATCTTT
1 TGATACCCATATCTTT
8531321 GACTTTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:8538340 original size:16 final size:16
Alignment explanation
Indices: 8538316--8538347 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8538306 TTTCATTTGC
*
8538316 ATTGTATCCATGGTTT
1 ATTGCATCCATGGTTT
8538332 ATTGCATCCATGGTTT
1 ATTGCATCCATGGTTT
8538348 GTGGCTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTGCATCCATGGTTT
Found at i:8540171 original size:19 final size:19
Alignment explanation
Indices: 8540147--8540194 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
8540137 TTCTTGGGCT
8540147 CAATTTTCAATCTCAGATC
1 CAATTTTCAATCTCAGATC
*
8540166 CAATTTTCGATCTCAGATC
1 CAATTTTCAATCTCAGATC
8540185 CAATTTTCAA
1 CAATTTTCAA
8540195 GTTTAATTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (19 bp):
CAATTTTCAATCTCAGATC
Found at i:8541957 original size:37 final size:37
Alignment explanation
Indices: 8541896--8542041 Score: 224
Period size: 37 Copynumber: 4.0 Consensus size: 37
8541886 TACGTATGAT
* *
8541896 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8541931 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8541968 CACTTATCACTTTGGTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
8542005 CACTTATCACTTTGTCTCATGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8542042 TAAAGCTATC
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 89 0.88
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8542058 original size:46 final size:46
Alignment explanation
Indices: 8542005--8542273 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
8541995 TAAGTGTAGC
* * **
8542005 CACTTATCACTTTGTCTCATGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8542051 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8542097 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8542149 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8542195 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8542247 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8542274 AGTACTCAAA
Statistics
Matches: 198, Mismatches: 13, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 111 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8542124 original size:52 final size:52
Alignment explanation
Indices: 8542048--8542267 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8542038 TAGCTAAAGC
* *
8542048 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8542101 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8542153 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8542199 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8542251 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8542268 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8542170 original size:98 final size:98
Alignment explanation
Indices: 8542005--8542273 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
8541995 TAAGTGTAGC
* * * *
8542005 CACTTATCACTTTGTCTCATGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8542070 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8542104 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8542169 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8542202 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8542267 GATCAGA
66 GATCAGA
8542274 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 150 0.94
99 9 0.06
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8548536 original size:5 final size:5
Alignment explanation
Indices: 8548526--8548558 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
8548516 AAATATATAT
8548526 AATAA AATAA AATAA AAT-A AATAA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA
8548559 CGAAGAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:8548547 original size:9 final size:9
Alignment explanation
Indices: 8548526--8548555 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8548516 AAATATATAT
8548526 AATAAAATAA
1 AATAAAAT-A
8548536 AATAAAATA
1 AATAAAATA
8548545 AATAAAATA
1 AATAAAATA
8548554 AA
1 AA
8548556 ATACGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AATAAAATA
Found at i:8549056 original size:76 final size:73
Alignment explanation
Indices: 8548813--8549937 Score: 1105
Period size: 75 Copynumber: 14.8 Consensus size: 73
8548803 GTGCAGCCCA
* * *
8548813 AGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTTTGAAAAACAGAAATTGATAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCA
** *
8548878 GTATGACTCG
64 GCGTGACCCG
* * ** * *
8548888 AGACTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACAGAAAAAG-ATATACCTCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAATACCTCA
* ***
8548952 GCATGGTTCG
64 GCGTGACCCG
* *
8548962 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTGAAAATACCTC
*
8549027 AGCGTGACTCG
63 AGCGTGACCCG
* * * * *
8549038 AGGCTCAACTCACTTCTCGCATTATGAGTTGATTTTTTTTTAAAACCAAAAATTGAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTG-AAAATACCT
*
8549103 C-GACGTGACTCG
62 CAG-CGTGACCCG
*
8549115 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTTAAAAGAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TT--GA-AAATACCT
8549179 CAGCGTGCGACCCG
62 CAGCGT--GACCCG
* * * *
8549193 AGGCTCAACTCACCTTTCGCAATATGAATTGATTTTTGAAAAATAGAAATTTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTGAAAATACCTCAG
*
8549258 TGTGCGACCCG
65 CGT--GACCCG
* *
8549269 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
8549334 GTGTGACCCG
66 --GTGACCCG
*
8549344 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGACAGAAACTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-ACAGAAA-TT--GA-AAATAC
* *
8549409 ATCGGCATGTGACCCG
60 CTCAGC--GTGACCCG
* * *
8549425 AGGCTCAACTCACCTCTCACAATATGAATTGATTTTTGAAAATA-A-AAATTTAAAAGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ACAGAAA-TT--GA-AAATACC
*
8549488 TCGGCATGTGACCCG
61 TCAGC--GTGACCCG
* * * *
8549503 AGGCTCAACTCACTTCTCACAATATGAGTTGATTTTT-AAAAACAAGAATTTAAAAGAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC-AGAAATT--GA-AAATACCT
*
8549567 CGGCATGTGACCCG
62 CAGC--GTGACCCG
* **
8549581 AGCCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATGGAAACTT-AAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTGAAAATACCTCAG
*
8549645 CGTACGACACG
65 CGT--GACCCG
* * **
8549656 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACATTGGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
8549721 ATGTGACCCG
66 --GTGACCCG
* * * * *
8549731 AGGCCCAACTAACTTCTAGCAATATGAGTTGAGTTTTGAAAAACAGAAACTT-AAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-TTGAAAATACCTCAG
*
8549795 CGTGCGACCTG
65 CGT--GACCCG
* * *
8549806 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGCAATTGAAAACTACCTCGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA-TACCTCAG
* *
8549871 CGTGTGCCAG
65 CGTG-ACCCG
* *
8549881 AGGCTCAACTCACCTCTCGCATTATGGGTTGATTTTTGAAAAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTGAAAA
8549938 ATAATTCTTG
Statistics
Matches: 920, Mismatches: 93, Indels: 73
0.85 0.09 0.07
Matches are distributed among these distances:
73 12 0.01
74 55 0.06
75 349 0.38
76 178 0.19
77 67 0.07
78 176 0.19
79 22 0.02
80 6 0.01
81 55 0.06
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
GTGACCCG
Found at i:8553763 original size:30 final size:30
Alignment explanation
Indices: 8553721--8553884 Score: 100
Period size: 30 Copynumber: 5.4 Consensus size: 30
8553711 AAAAATATAA
*
8553721 AAAATTATATTTTGGCCCCTAAACTTTTCC
1 AAAATTACATTTTGGCCCCTAAACTTTTCC
* * * * **
8553751 AAATTTACATTTTGACCCTTAAATTTTTTT
1 AAAATTACATTTTGGCCCCTAAACTTTTCC
* ** * * * **
8553781 AAATTTGTATCTTGACCCCTAAATTTTTTT
1 AAAATTACATTTTGGCCCCTAAACTTTTCC
* *
8553811 ATAAATTACATTTGGGCCTCTAAAC-TTTCC
1 A-AAATTACATTTTGGCCCCTAAACTTTTCC
* *
8553841 AAAAATTATATTTTGGCCCC-ATA-TTTTCC
1 -AAAATTACATTTTGGCCCCTAAACTTTTCC
8553870 TAAAATTACACTTTT
1 -AAAATTACA-TTTT
8553885 ACCCCAGAAA
Statistics
Matches: 103, Mismatches: 27, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
29 15 0.15
30 72 0.70
31 16 0.16
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (30 bp):
AAAATTACATTTTGGCCCCTAAACTTTTCC
Found at i:8554292 original size:15 final size:15
Alignment explanation
Indices: 8554257--8554300 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8554247 ACAAAAATAA
* *
8554257 AAGAGAAAGACAAAGG
1 AAGAAAAAGA-AAAAG
8554273 AAGAAAAAGAAAAAG
1 AAGAAAAAGAAAAAG
*
8554288 AAGAAAAGGAAAA
1 AAGAAAAAGAAAA
8554301 GGGGAGGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (15 bp):
AAGAAAAAGAAAAAG
Found at i:8554404 original size:11 final size:13
Alignment explanation
Indices: 8554380--8554434 Score: 76
Period size: 13 Copynumber: 4.2 Consensus size: 13
8554370 AGGGTTGCTG
8554380 AAAAAGAAGAAGA
1 AAAAAGAAGAAGA
8554393 AAAAAGAGAGAA-A
1 AAAAAGA-AGAAGA
8554406 AAAAAGGAAGAAGA
1 AAAAA-GAAGAAGA
*
8554420 AAAAGGAAGAAGA
1 AAAAAGAAGAAGA
8554433 AA
1 AA
8554435 GGGAAAGGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
13 27 0.71
14 11 0.29
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (13 bp):
AAAAAGAAGAAGA
Found at i:8555142 original size:18 final size:17
Alignment explanation
Indices: 8555119--8555176 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 17
8555109 TTTTTAAAAA
8555119 AAAAATTAATCGTGTTTC
1 AAAAATT-ATCGTGTTTC
* * *
8555137 AAAAATTTTCATATTCTC
1 AAAAATTATCGTGTT-TC
*
8555155 AAAATTTATCGTGTTTC
1 AAAAATTATCGTGTTTC
8555172 AAAAA
1 AAAAA
8555177 AAACAATAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
17 11 0.35
18 20 0.65
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (17 bp):
AAAAATTATCGTGTTTC
Found at i:8555173 original size:17 final size:17
Alignment explanation
Indices: 8555120--8555175 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
8555110 TTTTAAAAAA
*
8555120 AAAATTAATCGTGTTTC
1 AAAATTTATCGTGTTTC
* *
8555137 AAAAATTT-TCATATTCTC
1 -AAAATTTATCGTGTT-TC
8555155 AAAATTTATCGTGTTTC
1 AAAATTTATCGTGTTTC
8555172 AAAA
1 AAAA
8555176 AAAACAATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 18 0.58
18 13 0.42
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (17 bp):
AAAATTTATCGTGTTTC
Found at i:8555243 original size:16 final size:18
Alignment explanation
Indices: 8555222--8555282 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 18
8555212 TTTTTATAAA
*
8555222 AAAAATT-TCTCGTTTC-
1 AAAAATTCTCGCGTTTCT
8555238 AAAAATTCTCGCGTTTCT
1 AAAAATTCTCGCGTTTCT
*
8555256 AAAAAAATT-TCGTGTTTCT
1 --AAAAATTCTCGCGTTTCT
8555275 -AAAATTCT
1 AAAAATTCT
8555283 TGTATTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 13 0.34
17 9 0.24
19 9 0.24
20 7 0.18
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.41
Consensus pattern (18 bp):
AAAAATTCTCGCGTTTCT
Found at i:8555261 original size:20 final size:19
Alignment explanation
Indices: 8555220--8555278 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
8555210 ACTTTTTATA
*
8555220 AAAAAAATTTCTCGTTTC-
1 AAAAAAATTTCGCGTTTCT
8555238 --AAAAATTCTCGCGTTTCT
1 AAAAAAATT-TCGCGTTTCT
*
8555256 AAAAAAATTTCGTGTTTCT
1 AAAAAAATTTCGCGTTTCT
8555275 AAAA
1 AAAA
8555279 TTCTTGTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 7 0.20
17 8 0.23
19 13 0.37
20 7 0.20
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (19 bp):
AAAAAAATTTCGCGTTTCT
Found at i:8555324 original size:18 final size:18
Alignment explanation
Indices: 8555234--8555437 Score: 149
Period size: 17 Copynumber: 11.5 Consensus size: 18
8555224 AAATTTCTCG
*
8555234 TTTCAAAAATTCTCGCGT
1 TTTCAAAAATTCTCGTGT
*
8555252 TTCTAAAAAAATT-TCGTG-
1 TT-T-CAAAAATTCTCGTGT
* * *
8555270 TTTCTAAAATTCTTGTAT
1 TTTCAAAAATTCTCGTGT
*
8555288 TTTAAAAAAATT-TCGTGT
1 TTT-CAAAAATTCTCGTGT
*
8555306 TTTCAAAAATTCTCATG-
1 TTTCAAAAATTCTCGTGT
8555323 TTTCAAAAA-TCT-GTGT
1 TTTCAAAAATTCTCGTGT
8555339 TTTC-AAAATTC-CAGTG-
1 TTTCAAAAATTCTC-GTGT
* *
8555355 TTTCAAAAATTTTTGTGT
1 TTTCAAAAATTCTCGTGT
*
8555373 TTTCAAAAAAATTTCCCGTGT
1 TTTC--AAAAA-TTCTCGTGT
* * *
8555394 TTTTAAAAATTCCCGT-C
1 TTTCAAAAATTCTCGTGT
*
8555411 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTCTCGTGT
8555429 TTTCAAAAA
1 TTTCAAAAA
8555438 ATTGACCGTT
Statistics
Matches: 145, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
15 6 0.04
16 19 0.13
17 45 0.31
18 38 0.26
19 16 0.11
20 12 0.08
21 9 0.06
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (18 bp):
TTTCAAAAATTCTCGTGT
Found at i:8555331 original size:36 final size:36
Alignment explanation
Indices: 8555220--8555381 Score: 144
Period size: 36 Copynumber: 4.7 Consensus size: 36
8555210 ACTTTTTATA
**
8555220 AAAAAAATTTC-TCG-TTTCAAAAATTCTCGCGTTTC
1 AAAAAAATTTCGT-GTTTTCAAAAATTCTCATGTTTC
* ** * *
8555255 TAAAAAAATTTCGTG-TTTCTAAAATTCTTGTATTTT
1 -AAAAAAATTTCGTGTTTTCAAAAATTCTCATGTTTC
8555291 AAAAAAATTTCGTGTTTTCAAAAATTCTCATGTTTC
1 AAAAAAATTTCGTGTTTTCAAAAATTCTCATGTTTC
*
8555327 --AAAAATCT-GTGTTTTC-AAAATTC-CAGTGTTTC
1 AAAAAAATTTCGTGTTTTCAAAAATTCTCA-TGTTTC
* *
8555359 -AAAAATTTTTGTGTTTTCAAAAA
1 AAAAAAATTTCGTGTTTTCAAAAA
8555382 AATTTCCCGT
Statistics
Matches: 107, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
31 2 0.02
32 13 0.12
33 14 0.13
34 15 0.14
35 18 0.17
36 44 0.41
37 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (36 bp):
AAAAAAATTTCGTGTTTTCAAAAATTCTCATGTTTC
Found at i:8555541 original size:20 final size:20
Alignment explanation
Indices: 8555516--8555580 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 20
8555506 TTATGTTTTC
8555516 AAAAATAAATTGTGTTTTAA
1 AAAAATAAATTGTGTTTTAA
*
8555536 AAAAAT---TTGTGTTTCAA
1 AAAAATAAATTGTGTTTTAA
*
8555553 AAAGA-AAATTCGTGTTTTCAA
1 AAAAATAAATT-GTGTTTT-AA
8555574 AAGAAAT
1 AA-AAAT
8555581 CTCGTGTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
17 14 0.41
19 2 0.06
20 12 0.35
21 4 0.12
22 2 0.06
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (20 bp):
AAAAATAAATTGTGTTTTAA
Found at i:8555585 original size:20 final size:19
Alignment explanation
Indices: 8555509--8555594 Score: 83
Period size: 19 Copynumber: 4.6 Consensus size: 19
8555499 AAAATTTTTA
*
8555509 TGTTTTCAAAAATAAATT-G
1 TGTTTTC-AAAAGAAATTCG
*
8555528 TGTTTT-AAAA-AAATTTG
1 TGTTTTCAAAAGAAATTCG
8555545 TG-TTTCAAAAAGAAAATTCG
1 TGTTTTC-AAAAG-AAATTCG
8555565 TGTTTTCAAAAGAAATCTCG
1 TGTTTTCAAAAGAAAT-TCG
8555585 TG-TTTCAAAA
1 TGTTTTCAAAA
8555595 TTTTTGTGTC
Statistics
Matches: 59, Mismatches: 1, Indels: 14
0.80 0.01 0.19
Matches are distributed among these distances:
16 8 0.14
17 7 0.12
18 4 0.07
19 18 0.31
20 18 0.31
21 4 0.07
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (19 bp):
TGTTTTCAAAAGAAATTCG
Found at i:8558769 original size:19 final size:19
Alignment explanation
Indices: 8558724--8558784 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
8558714 ATCTAATTAC
8558724 AAATATTTAATTATTATATTT
1 AAATATTTAATTA-TA-ATTT
*
8558745 AAATATTTAAATATAATTT
1 AAATATTTAATTATAATTT
*
8558764 ATATATTCTAATTA-AATTT
1 AAATATT-TAATTATAATTT
8558783 AA
1 AA
8558785 TAAATAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 7 0.20
21 12 0.34
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATTTAATTATAATTT
Found at i:8563828 original size:6 final size:6
Alignment explanation
Indices: 8563817--8563847 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
8563807 CTAGGTTCAT
*
8563817 AAATAA AAATAA TAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA AAATAA A
8563848 TATTAAACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:8565103 original size:24 final size:24
Alignment explanation
Indices: 8565076--8565130 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8565066 TAAAAATAAT
8565076 TATATTAAAAATTTTATTAAATTA
1 TATATTAAAAATTTTATTAAATTA
*** *
8565100 TATATTTTTATTTTTATTAAATTA
1 TATATTAAAAATTTTATTAAATTA
8565124 TAT-TTAA
1 TATATTAA
8565131 TAATAATTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATTAAAAATTTTATTAAATTA
Found at i:8565580 original size:23 final size:21
Alignment explanation
Indices: 8565554--8565630 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 21
8565544 AAATTAAATT
8565554 ATTTTTAATGATTTTTTATAATA
1 ATTTTTAATGATTTTTT-T-ATA
8565577 ATTTTT-ATGATTTTTTTATA
1 ATTTTTAATGATTTTTTTATA
* *
8565597 ATGTTATAATGAATTTTTTTATG
1 AT-TTTTAATG-ATTTTTTTATA
*
8565620 ATTTTTTATGA
1 ATTTTTAATGA
8565631 AAAGGTCATA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
20 5 0.11
21 5 0.11
22 19 0.40
23 18 0.38
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (21 bp):
ATTTTTAATGATTTTTTTATA
Found at i:8565630 original size:22 final size:23
Alignment explanation
Indices: 8565565--8565631 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
8565555 TTTTTAATGA
*
8565565 TTTTTTATAATAATTTTTATG-AT
1 TTTTTTATAAT-GTTTTTATGAAT
* *
8565588 TTTTTTATAATGTTATAATGAAT
1 TTTTTTATAATGTTTTTATGAAT
*
8565611 TTTTTTATGAT-TTTTTATGAA
1 TTTTTTATAATGTTTTTATGAA
8565632 AAGGTCATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
22 14 0.38
23 23 0.62
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
TTTTTTATAATGTTTTTATGAAT
Found at i:8568410 original size:15 final size:15
Alignment explanation
Indices: 8568390--8568482 Score: 123
Period size: 15 Copynumber: 6.2 Consensus size: 15
8568380 CTCGTAACTT
*
8568390 TGGGGGTGGCGGCTA
1 TGGGGGTGGTGGCTA
8568405 TGGGGGTGGTGGCTA
1 TGGGGGTGGTGGCTA
*
8568420 TGGCGGTGGTGGCTA
1 TGGGGGTGGTGGCTA
* *
8568435 TGGAGGCGGTGGCTA
1 TGGGGGTGGTGGCTA
*
8568450 TGGTGGTGGTGGCTA
1 TGGGGGTGGTGGCTA
* *
8568465 TGGTGGTGGTGACTA
1 TGGGGGTGGTGGCTA
8568480 TGG
1 TGG
8568483 CAGAAATGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 71 1.00
ACGTcount: A:0.09, C:0.10, G:0.55, T:0.27
Consensus pattern (15 bp):
TGGGGGTGGTGGCTA
Found at i:8573214 original size:23 final size:23
Alignment explanation
Indices: 8573171--8573229 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
8573161 CATCTCAAAA
* *
8573171 AATTATAAAAAAT-TAATATATAT
1 AATTA-AAAAAATAAAAAATATAT
8573194 AATTAAAAAAATAAAAAATATAT
1 AATTAAAAAAATAAAAAATATAT
8573217 -A--AAAAAAATAAAA
1 AATTAAAAAAATAAAA
8573230 GTAATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 12 0.36
22 8 0.24
23 13 0.39
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (23 bp):
AATTAAAAAAATAAAAAATATAT
Found at i:8573238 original size:19 final size:18
Alignment explanation
Indices: 8573192--8573238 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
8573182 ATTAATATAT
8573192 ATAATT-AAAAAAATAAA
1 ATAATTAAAAAAAATAAA
*
8573209 AAATATATAAAAAAAATAAA
1 ATA-AT-TAAAAAAAATAAA
8573229 AGTAATTAAA
1 A-TAATTAAA
8573239 TATATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 2 0.08
19 5 0.21
20 14 0.58
21 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (18 bp):
ATAATTAAAAAAAATAAA
Found at i:8573276 original size:29 final size:29
Alignment explanation
Indices: 8573168--8573277 Score: 83
Period size: 29 Copynumber: 3.9 Consensus size: 29
8573158 TTACATCTCA
8573168 AAAAATTA-TAAAAAAT-TAATATATATAATT
1 AAAAATTATTAAAAAATAT-ATA-ATA-AATT
* * *
8573198 AAAAA--AATAAAAAATATATAAAAAAAAT
1 AAAAATTATTAAAAAATATAT-AATAAATT
* *
8573226 AAAAGTAATT---AAATATAT-ATAAATT
1 AAAAATTATTAAAAAATATATAATAAATT
8573251 AAAAATTATTAAAAAATATATAATAAA
1 AAAAATTATTAAAAAATATATAATAAA
8573278 AACAAACCTT
Statistics
Matches: 63, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
25 13 0.21
27 8 0.13
28 16 0.25
29 17 0.27
30 9 0.14
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (29 bp):
AAAAATTATTAAAAAATATATAATAAATT
Found at i:8573290 original size:52 final size:51
Alignment explanation
Indices: 8573175--8573279 Score: 142
Period size: 55 Copynumber: 2.0 Consensus size: 51
8573165 TCAAAAAATT
8573175 ATAAAA-AATT-AATATATATAATTAAAAAAATAAAAAATATATAAAAAAA
1 ATAAAAGAATTAAATATATATAATTAAAAAAATAAAAAATATATAAAAAAA
* *
8573224 ATAAAAGTAATTAAATATATATAAATTAAAAATTATTAAAAAATATATAATAAAA
1 ATAAAAG-AATTAAATATATAT-AATTAAAAA--AATAAAAAATATATAAAAAAA
8573279 A
1 A
8573280 CAAACCTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
49 6 0.12
51 4 0.08
52 9 0.19
53 9 0.19
55 20 0.42
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.30
Consensus pattern (51 bp):
ATAAAAGAATTAAATATATATAATTAAAAAAATAAAAAATATATAAAAAAA
Found at i:8592964 original size:5 final size:5
Alignment explanation
Indices: 8592954--8592978 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8592944 CTGTTGGAGG
8592954 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
8592979 ATAGTGCGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:8599414 original size:15 final size:15
Alignment explanation
Indices: 8599394--8599427 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
8599384 AAAGAAAGTC
8599394 CAAACTTAATGTCCA
1 CAAACTTAATGTCCA
*
8599409 CAAACTTAATGTCCT
1 CAAACTTAATGTCCA
8599424 CAAA
1 CAAA
8599428 ACCAGTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.26
Consensus pattern (15 bp):
CAAACTTAATGTCCA
Found at i:8600425 original size:17 final size:17
Alignment explanation
Indices: 8600392--8600424 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
8600382 AAAAAGTATT
8600392 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
8600409 TTAAAAA-ATTTTAAAA
1 TTAAAAATATTTTAAAA
8600425 AATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:8600430 original size:17 final size:17
Alignment explanation
Indices: 8600393--8600437 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
8600383 AAAAGTATTT
*
8600393 TAAAAATATTTTAAAAT
1 TAAAAATATTTTAAAAA
8600410 TAAAAA-ATTTTAAAAAA
1 TAAAAATATTTT-AAAAA
*
8600427 TAAATATATTT
1 TAAAAATATTT
8600438 ATTATATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.21
17 15 0.62
18 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAATATTTTAAAAA
Found at i:8604582 original size:23 final size:23
Alignment explanation
Indices: 8604545--8604588 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
8604535 TGACTTGATT
*
8604545 TTTTAGAAACCTTTTTACATTCC
1 TTTTAGAAACCTTTTCACATTCC
**
8604568 TTTTAGAAATTTTTTCACATT
1 TTTTAGAAACCTTTTCACATT
8604589 ATAAGTAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.52
Consensus pattern (23 bp):
TTTTAGAAACCTTTTCACATTCC
Found at i:8604649 original size:62 final size:60
Alignment explanation
Indices: 8604579--8604718 Score: 181
Period size: 62 Copynumber: 2.3 Consensus size: 60
8604569 TTTAGAAATT
* * * * * * **
8604579 TTTTCACATTATAAGTAATGTTTCATGTGTTAAGTATTTTTTTTAATGTTTTACGAATTACC
1 TTTTCACATTTTAAGTAATGTTTCATATATAAAGTA-ATTTTTCAA-AATTTACGAATTACC
8604641 TTTTCACATTTTAAGTAATGTTTCATATATAAAGTAATTTTTCAAAATTTACGAATTACC
1 TTTTCACATTTTAAGTAATGTTTCATATATAAAGTAATTTTTCAAAATTTACGAATTACC
*
8604701 TTTTCGCATTTTAAGTAA
1 TTTTCACATTTTAAGTAA
8604719 CATTTAATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
60 30 0.43
61 7 0.10
62 32 0.46
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (60 bp):
TTTTCACATTTTAAGTAATGTTTCATATATAAAGTAATTTTTCAAAATTTACGAATTACC
Found at i:8609604 original size:20 final size:21
Alignment explanation
Indices: 8609576--8609615 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8609566 CGCTTTTTGG
*
8609576 ATAAGATATATT-ATTTAATA
1 ATAAAATATATTAATTTAATA
*
8609596 ATAAAATATTTTAATTTAAT
1 ATAAAATATATTAATTTAAT
8609616 TTTAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
ATAAAATATATTAATTTAATA
Found at i:8617304 original size:8 final size:9
Alignment explanation
Indices: 8617286--8617310 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8617276 ACATTCACTT
8617286 AAAATTAAA
1 AAAATTAAA
8617295 AAAATTAAA
1 AAAATTAAA
8617304 AAAATTA
1 AAAATTA
8617311 TTTTTGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAATTAAA
Found at i:8628770 original size:851 final size:851
Alignment explanation
Indices: 8627129--8629677 Score: 5080
Period size: 851 Copynumber: 3.0 Consensus size: 851
8627119 CAAAAATCTA
8627129 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
1 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
8627194 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
66 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
8627259 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
131 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
8627324 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
196 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
8627389 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
261 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
8627454 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
326 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
8627519 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
391 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
8627584 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
456 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
8627649 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
521 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
*
8627714 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATATACAAT
586 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
8627779 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
651 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
*
8627844 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTTAATTAGCCTTTCAAT
716 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
8627909 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
781 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
8627974 CAAAAT
846 CAAAAT
8627980 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
1 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
8628045 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
66 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
8628110 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
131 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
8628175 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
196 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
8628240 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
261 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
8628305 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
326 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
8628370 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
391 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
8628435 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
456 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
8628500 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
521 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
8628565 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
586 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
8628630 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
651 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
8628695 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
716 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
8628760 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
781 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
8628825 CAAAAT
846 CAAAAT
8628831 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
1 CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
8628896 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
66 TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
8628961 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
131 ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
8629026 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
196 CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
8629091 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
261 AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
8629156 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
326 TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
8629221 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
391 GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
8629286 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
456 AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
8629351 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
521 CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
8629416 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
586 AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
8629481 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
651 TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
8629546 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
716 TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
8629611 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
781 TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
8629676 CA
846 CA
8629678 GAATTTTAGC
Statistics
Matches: 1696, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
851 1696 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (851 bp):
CTAATCCCGAACTTTTTCTTTTCCTCGATCTAGCTTCGTATTTGAATTTTCTGGATCTAAATAAA
TAAATTTAATCATTAATCTAATACATTTCATGTTCATATGTAACATTCTCTATAATTCCATTATT
ATTTATAGTTCATTCAAAGTTGTCTCATTGAGTCATAGTCACTAAATTATTTATATCTTGAGTTA
CAAAACTCCAAATTAAGATCCTCTAATTTTCCCTGAAACTAGACTCATATATCTTCTTACCATAA
AATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAAGTTTCTCCTGTTTCAC
TGTTCAACAGTTCTGACCCCTCTTCACTAAAAATTAATTATCTCATTGCAAAAAATTCAGATGAT
GTTCTCGTTTGTTTATTTTAAAAATAGACTCATTAAGGATTTTAAAAATATAAATTTAATCCTAT
AATTATTTTTCTCTAATTTTTTATGATTTTCCAAAGTCAGAACAGGGGAACCCACTTATTCTGAC
CTTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTGCTTACACCGTTTCTTTTAT
AAGAAACTAGACCTAATAAGCTTTAATTTAATATTTTATTCATCCTCTAATTAGATATAAACAAT
TTTTGGTGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAACTATTTTAGTGCATGATGTTTA
TTACCATTTTTCCCCTAAGCTTTCAATAAATGATAATTTCATCCTTGCTCAATTAGCCTTTCAAT
TGAGCTTATTTTTCTCAACTAACACTTTATTCTATCACTTTAAACTACTTTACAACCTTGGAAAT
CAAAAT
Found at i:8630323 original size:15 final size:15
Alignment explanation
Indices: 8630306--8630343 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
8630296 TTATGTTTTA
8630306 TATATTAT-TT-TAT
1 TATATTATATTGTAT
8630319 TATATTATATTGTAT
1 TATATTATATTGTAT
8630334 TATATTATAT
1 TATATTATAT
8630344 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.35
14 2 0.09
15 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (15 bp):
TATATTATATTGTAT
Found at i:8630324 original size:5 final size:5
Alignment explanation
Indices: 8630306--8630343 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
8630296 TTATGTTTTA
*
8630306 TATAT TAT-T T-TAT TATAT TATAT TGTAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
8630344 AAATTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 1 0.03
4 4 0.14
5 24 0.83
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (5 bp):
TATAT
Found at i:8631560 original size:23 final size:23
Alignment explanation
Indices: 8631533--8631623 Score: 137
Period size: 23 Copynumber: 4.0 Consensus size: 23
8631523 CCTTACCAAC
8631533 CAGGCACTTTATGTGTCGTATCT
1 CAGGCACTTTATGTGTCGTATCT
8631556 CAGGCACTTTATGTGTCGTATCT
1 CAGGCACTTTATGTGTCGTATCT
* *
8631579 CAGGCACTTTATGTGTCTTATAT
1 CAGGCACTTTATGTGTCGTATCT
* **
8631602 CAGGCACCTCGTGTGTCGTATC
1 CAGGCACTTTATGTGTCGTATC
8631624 AGGCACCTCG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (23 bp):
CAGGCACTTTATGTGTCGTATCT
Found at i:8631623 original size:21 final size:21
Alignment explanation
Indices: 8631599--8631650 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
8631589 ATGTGTCTTA
8631599 TATCAGGCACCTCGTGTGTCG
1 TATCAGGCACCTCGTGTGTCG
*
8631620 TATCAGGCACCTCGTGTGTTG
1 TATCAGGCACCTCGTGTGTCG
*
8631641 TTTCAGGCAC
1 TATCAGGCAC
8631651 TTATATGTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.31
Consensus pattern (21 bp):
TATCAGGCACCTCGTGTGTCG
Found at i:8648402 original size:19 final size:18
Alignment explanation
Indices: 8648360--8648402 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
8648350 ATAATATTTT
* * *
8648360 ATATTATGTTTTTTTTAT
1 ATATTATGTATTTATTAC
8648378 ATATTATGTAATTTATTAC
1 ATATTATGT-ATTTATTAC
8648397 ATATTA
1 ATATTA
8648403 AAAAATAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (18 bp):
ATATTATGTATTTATTAC
Found at i:8651076 original size:21 final size:23
Alignment explanation
Indices: 8651032--8651082 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
8651022 TAGTTTAAAT
* *
8651032 AAATACTCATATTTATATTTTTA
1 AAATATTCATATTTATATTATTA
8651055 AAATATTCATA-TT-TATTATTA
1 AAATATTCATATTTATATTATTA
8651076 AATATAT
1 AA-ATAT
8651083 ATATATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.36
22 6 0.24
23 10 0.40
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (23 bp):
AAATATTCATATTTATATTATTA
Found at i:8652555 original size:32 final size:32
Alignment explanation
Indices: 8652519--8652579 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
8652509 TGTGTACAAT
*
8652519 TGAACCAAAATCAAAGTTTCATGTATATATTA
1 TGAACCAAAATCAAAGTTTCATCTATATATTA
** **
8652551 TGAACCGCAATTTAAGTTTCATCTATATA
1 TGAACCAAAATCAAAGTTTCATCTATATA
8652580 ATGGCACCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (32 bp):
TGAACCAAAATCAAAGTTTCATCTATATATTA
Found at i:8656273 original size:31 final size:31
Alignment explanation
Indices: 8656214--8656276 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
8656204 ATTTCAATTA
*
8656214 TTATACTTTTCGAATTGGTAAATTTTAGTCC
1 TTATACTTTTCGAATTGGTAAATATTAGTCC
**
8656245 TTATACTTTTC-AATTTTTGAAATATTAGTCC
1 TTATACTTTTCGAATTGGT-AAATATTAGTCC
8656276 T
1 T
8656277 GGCTCAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.51
Consensus pattern (31 bp):
TTATACTTTTCGAATTGGTAAATATTAGTCC
Found at i:8675731 original size:12 final size:12
Alignment explanation
Indices: 8675714--8675741 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8675704 CTAAATCCTT
8675714 TCTCTAATATTC
1 TCTCTAATATTC
8675726 TCTCTAATATTC
1 TCTCTAATATTC
8675738 TCTC
1 TCTC
8675742 AAATTCCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (12 bp):
TCTCTAATATTC
Found at i:8675747 original size:22 final size:22
Alignment explanation
Indices: 8675712--8675776 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
8675702 AACTAAATCC
8675712 TTTCTCT-AATATTCTCTCT-AA
1 TTTCTCTCAA-ATTCTCTCTCAA
8675733 TATTCTCTCAAATTC-CTCTCAA
1 T-TTCTCTCAAATTCTCTCTCAA
*
8675755 TTTGCTCTCAATTTC-CTCTCAA
1 TTT-CTCTCAAATTCTCTCTCAA
8675777 ATTCCTATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 7 0.18
22 30 0.77
23 2 0.05
ACGTcount: A:0.23, C:0.29, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTCTCTCAAATTCTCTCTCAA
Found at i:8675753 original size:11 final size:11
Alignment explanation
Indices: 8675737--8675782 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
8675727 CTCTAATATT
8675737 CTCTCAAATTC
1 CTCTCAAATTC
* *
8675748 CTCTCAATTTG
1 CTCTCAAATTC
*
8675759 CTCTCAATTTC
1 CTCTCAAATTC
8675770 CTCTCAAATTC
1 CTCTCAAATTC
8675781 CT
1 CT
8675783 ATTTAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.22, C:0.35, G:0.02, T:0.41
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:8677660 original size:18 final size:18
Alignment explanation
Indices: 8677619--8677660 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8677609 GTCAGGGGCG
* *
8677619 TATCCTAACCCTTTTATG
1 TATCCTAACCCTTATATA
8677637 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
*
8677655 TTTCCT
1 TATCCT
8677661 TTTTCGAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:8678291 original size:20 final size:21
Alignment explanation
Indices: 8678266--8678304 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
8678256 TTCAATTTAC
8678266 TAGATTATT-TTTTA-ATAAAA
1 TAGATT-TTCTTTTATATAAAA
8678286 TAGATTTTCTTTTATATAA
1 TAGATTTTCTTTTATATAA
8678305 GTCAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 11 0.65
21 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (21 bp):
TAGATTTTCTTTTATATAAAA
Found at i:8681293 original size:44 final size:44
Alignment explanation
Indices: 8681230--8681313 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
8681220 GGCCATGCAC
* * *
8681230 TACTGTAGCAAAAGTGCGTCCACGTGGGAGCTTTTTTCAGGGGT
1 TACTGTAACAAAAGTGCGTCCACGTGGGAACTTCTTTCAGGGGT
*
8681274 TACTGTAACAAATGTGCGTCCACGTGGGAACTTCTTTCAG
1 TACTGTAACAAAAGTGCGTCCACGTGGGAACTTCTTTCAG
8681314 TACTTTTGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (44 bp):
TACTGTAACAAAAGTGCGTCCACGTGGGAACTTCTTTCAGGGGT
Found at i:8681406 original size:126 final size:126
Alignment explanation
Indices: 8681261--8681687 Score: 563
Period size: 126 Copynumber: 3.4 Consensus size: 126
8681251 ACGTGGGAGC
* * ***
8681261 TTTTTTCAGGGGTTACTGTAACAAATGTGCGTCCACGTGGGAACTTCTTTCAGTACTTTTGCTGA
1 TTTTTTCAGGGGCTACTGTAGCAAAAACGCGTCCACGTGGGAACTTCTTTCAGTACTTTTGCTGA
* *
8681326 CAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAAAAACGTCTACTCAAAATTA
66 CAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
* * * *
8681387 TTTTTTCAGGGGCTACTGTAGCAAAAATGCGTCCACAT-GGAAGCTTATTTCAGTACTTCTGCTG
1 TTTTTTCAGGGGCTACTGTAGCAAAAACGCGTCCACGTGGGAA-CTTCTTTCAGTACTTTTGCTG
* * * *
8681451 ACAAAACATTCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTTTACTCGGAATTA
65 ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
* * *
8681513 TTTTTT-AGGGGATACTGTAGTAAAAACGCGTCCACGTGGGAGCTTCTTTCAGTA-TTTCTGCTG
1 TTTTTTCAGGGGCTACTGTAGCAAAAACGCGTCCACGTGGGAACTTCTTTCAGTACTTT-TGCTG
* * * *
8681576 ACAAAGCATCATTCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTA
65 ACAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
* ** * * *
8681638 TTTTCTCAGGACCTATTGTAGCAAAAGCGCGTCCACGTGGGATCTTCTTT
1 TTTTTTCAGGGGCTACTGTAGCAAAAACGCGTCCACGTGGGAACTTCTTT
8681688 AAATTAACAA
Statistics
Matches: 261, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
124 2 0.01
125 106 0.41
126 153 0.59
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (126 bp):
TTTTTTCAGGGGCTACTGTAGCAAAAACGCGTCCACGTGGGAACTTCTTTCAGTACTTTTGCTGA
CAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
Found at i:8681822 original size:97 final size:95
Alignment explanation
Indices: 8681710--8682017 Score: 305
Period size: 96 Copynumber: 3.2 Consensus size: 95
8681700 ATATTAAATT
* * * *
8681710 AAGTAACCCTAAACCCTAATTTATTTAAATTTTTACTTAAAAATCCTAAACACTAAGCCCTAAAT
1 AAGTAACCCTAAACCCTAATTTATTT-GATTTTTTCTTAAAAACCCTAAACACTAAACCCT-AAT
* *
8681775 -TAATTTATTAAAAATTTATAATTAATTTACTC
64 CTAAATT-TTAAAAATTTATAATTAAATTACTC
* * * *
8681807 AAGTAACCTTGAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTTAACTCTAAACCCTAATCT
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCT
** *
8681872 AAATTTTAAATTTTTTTAATTAAATTACTC
66 AAATTTTAAAAATTTATAATTAAATTACTC
* * ** **
8681902 AAGTAACCCTAAACCCTAAGTTAATTGATTTTTTCTTAAAAAACAATAAACAC-AAAAACTAATC
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTT-AAAAACCCTAAACACTAAACCCTAATC
* * * * * *
8681966 CAATTTTTTAAAAAATTATAATTAATTTAATT
65 TAA-ATTTTAAAAATTTATAATTAAATTACTC
* **
8681998 GACAAACCCTAAACCCTAAT
1 AAGTAACCCTAAACCCTAAT
8682018 CCCTTGCTTA
Statistics
Matches: 172, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
95 68 0.40
96 80 0.47
97 24 0.14
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (95 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCT
AAATTTTAAAAATTTATAATTAAATTACTC
Found at i:8681917 original size:95 final size:96
Alignment explanation
Indices: 8681710--8681943 Score: 301
Period size: 95 Copynumber: 2.4 Consensus size: 96
8681700 ATATTAAATT
* * * *
8681710 AAGTAACCCTAAACCCTAATTTATTTAAATTTTTACTTAAAAATCCTAAACACTAAGCCCTAAAT
1 AAGTAACCCTAAACCCTAATTTATTT-GATTTTTTCTTAAAAACCCTAAACACTAAACCCTAAAT
* *
8681775 TAATTTATTAAAAATTTATAATTAATTTACTC
65 TAAATTATTAAAAATTTATAATTAAATTACTC
* * * *
8681807 AAGTAACCTTGAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTTAACTCTAAACCCT-AATC
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAAAT-
** *
8681871 TAAATT-TTAAATTTTTTTAATTAAATTACTC
65 TAAATTATTAAAAATTTATAATTAAATTACTC
* *
8681902 AAGTAACCCTAAACCCTAAGTTAATTGATTTTTTCTTAAAAA
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAA
8681944 ACAATAAACA
Statistics
Matches: 119, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
95 62 0.52
96 33 0.28
97 24 0.20
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (96 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAAATT
AAATTATTAAAAATTTATAATTAAATTACTC
Found at i:8686075 original size:25 final size:25
Alignment explanation
Indices: 8686031--8686080 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
8686021 ATATCAAAAT
8686031 AATAATATTTTTATCGAAAAAATAAC
1 AATAATATTTTTATC-AAAAAATAAC
8686057 AATAATATTTTTTAT-AAAAAATAA
1 AATAATA-TTTTTATCAAAAAATAA
8686081 ATTTAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 7 0.30
27 7 0.30
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
AATAATATTTTTATCAAAAAATAAC
Found at i:8686803 original size:16 final size:16
Alignment explanation
Indices: 8686784--8686819 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8686774 TTTACTTTAA
*
8686784 ATATATTCATATATAT
1 ATATATTCACATATAT
*
8686800 ATATATTCACATGTAT
1 ATATATTCACATATAT
8686816 ATAT
1 ATAT
8686820 TATTTTACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATATTCACATATAT
Found at i:8687392 original size:13 final size:12
Alignment explanation
Indices: 8687370--8687434 Score: 58
Period size: 13 Copynumber: 5.1 Consensus size: 12
8687360 AACATTCAAA
8687370 ATTTTCAAAAGC
1 ATTTTCAAAAGC
*
8687382 ATTTCTCAAAAGT
1 ATTT-TCAAAAGC
* *
8687395 ACTTTTCCACAGC
1 A-TTTTCAAAAGC
*
8687408 ACTTCTCAAAAGC
1 A-TTTTCAAAAGC
8687421 ACTTTTCAAAAGC
1 A-TTTTCAAAAGC
8687434 A
1 A
8687435 ATGAAGAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
12 4 0.09
13 36 0.84
14 3 0.07
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.31
Consensus pattern (12 bp):
ATTTTCAAAAGC
Found at i:8687434 original size:26 final size:26
Alignment explanation
Indices: 8687371--8687434 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
8687361 ACATTCAAAA
* *
8687371 TTTTCAAAAGCATTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* *
8687397 TTTTCCACAGCACTTCTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
8687423 TTTTCAAAAGCA
1 TTTTCAAAAGCA
8687435 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:8688031 original size:13 final size:13
Alignment explanation
Indices: 8688015--8688093 Score: 86
Period size: 13 Copynumber: 6.1 Consensus size: 13
8688005 TTTAAACCAA
8688015 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
8688028 ACTTCTCAAAGGC
1 ACTTTTCAAAAGC
* *
8688041 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
* *
8688054 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
8688067 ACTTTTCAAGAGC
1 ACTTTTCAAAAGC
*
8688080 AGTTTTCAAAAGC
1 ACTTTTCAAAAGC
8688093 A
1 A
8688094 ATAAAGAACT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 56 1.00
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:8689960 original size:18 final size:21
Alignment explanation
Indices: 8689932--8689974 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
8689922 TAAATAATTT
8689932 TTTTTATATATTT-T-TAAAA
1 TTTTTATATATTTATATAAAA
8689951 TTTTTA-ATATTTATATAAAA
1 TTTTTATATATTTATATAAAA
8689971 TTTT
1 TTTT
8689975 AGATTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 7 0.32
20 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTATATATTTATATAAAA
Found at i:8693892 original size:132 final size:132
Alignment explanation
Indices: 8693665--8694735 Score: 1874
Period size: 132 Copynumber: 8.1 Consensus size: 132
8693655 AAGATCTGTA
* * * * **
8693665 ATCTTCAATCTACTTCATGCCAATACATG-AGACAAGATCTACTTTCTTCGATCTACTTTACCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
* * * * * * * *
8693729 CAATATGGGAAGACAAAATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8693794 CT
131 CT
8693796 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
8693861 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8693926 CT
131 CT
*
8693928 ACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
8693993 CAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCAG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694058 CT
131 CT
*
8694060 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
* *
8694125 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTTCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694190 CT
131 CT
*
8694192 ACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
8694257 CAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCAG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694322 CT
131 CT
*
8694324 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
* *
8694389 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTTCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694454 CT
131 CT
*
8694456 ACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
8694521 CAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCAG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694586 CT
131 CT
*
8694588 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
*
8694653 CAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCCTACCAATATAGGAAGATAGGATCAG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
8694718 CT
131 CT
8694720 ATCTTCGATCTACTTC
1 ATCTTCGATCTACTTC
8694736 TTGCCCCGGG
Statistics
Matches: 901, Mismatches: 38, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 27 0.03
132 874 0.97
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCAC
CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCAG
CT
Found at i:8694955 original size:95 final size:95
Alignment explanation
Indices: 8694848--8695136 Score: 497
Period size: 95 Copynumber: 3.0 Consensus size: 95
8694838 AAGATCTGCA
*
8694848 ATCTTCAATCTATTCTACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
8694913 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
* * * * *
8694943 ATCTTTAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCATTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
8695008 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
*
8695038 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACGG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
8695103 TGGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
8695133 ATCT
1 ATCT
8695137 GCTTCGCTGC
Statistics
Matches: 179, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 179 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:8695396 original size:86 final size:86
Alignment explanation
Indices: 8695261--8695525 Score: 395
Period size: 86 Copynumber: 3.1 Consensus size: 86
8695251 AAATCTGCCA
* * * * * *
8695261 TCTTCGATCTGCTTTCGCTGCCAAATACAGAAAAGCAAGATCTGATATCTTCAACCAGCTCTGCT
1 TCTTCGATCTGC-TTCGCTGTC-AATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACT
8695326 ACAAACGAGAGAGGCAAGGTTTG
64 ACAAACGAGAGAGGCAAGGTTTG
*
8695349 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
* *
8695414 AAACAAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* * *
8695435 TTTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTACAATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
*
8695500 AAACGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
8695521 TCTTC
1 TCTTC
8695526 AATTTTTACT
Statistics
Matches: 160, Mismatches: 17, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
86 140 0.88
87 8 0.05
88 12 0.08
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:8695471 original size:42 final size:42
Alignment explanation
Indices: 8695337--8695471 Score: 96
Period size: 42 Copynumber: 3.2 Consensus size: 42
8695327 CAAACGAGAG
* *
8695337 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * * *
8695379 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-ACAAGA
1 AGGCAAGGTTTG-T-T-TTCGATCTGCTTC-GCTGTCAATGCAGGA
*
8695422 GTGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGA
8695465 AGGCAAG
1 AGGCAAG
8695472 ATCTACAATC
Statistics
Matches: 63, Mismatches: 22, Indels: 16
0.62 0.22 0.16
Matches are distributed among these distances:
41 9 0.14
42 22 0.35
43 10 0.16
44 13 0.21
45 9 0.14
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTCAATGCAGGA
Done.