Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 29 of 199
Found at i:9372149 original size:132 final size:132
Alignment explanation
Indices: 9371912--9372560 Score: 987
Period size: 132 Copynumber: 4.9 Consensus size: 132
9371902 CTGCATAGAC
* * * *
9371912 AGTGGGGCAGATCAAAGATGG-CAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGTC
1 AGTGGAGCAGATCAAAGATGGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
*
9371976 AGTAATTCTACTTCCCTGGGCAGTAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
9372041 AGT
130 AGT
*
9372044 AGTGGGGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
9372109 GTAATTCTACTTCCTTGGGCAGCAGTGAAATGGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9372174 GT
131 GT
* * * *
9372176 AGTGGAGCAGATCAAAGATAGTGAATTTTACCTCCCCGTGGTTACAGTAGAGTACATTGAAGCGA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* *
9372241 GTAATTCTACTTCCCTGGGAAGCAATGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9372306 GT
131 GT
* *
9372308 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
9372373 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGTGTCCCTAAGTA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9372438 GT
131 GT
* * * *
9372440 AGTGGAGCAGATCAAAGATGATGAATTTTACCTCCCTGTGGTTACAGCGGAGTACATTAAAACCA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * * * **
9372505 ATAATTGTA-TCTCCCTAGGCAGTAGTGGAATAGATTAAAGATAACAGATCTTGTCT
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCT
9372561 TCCCATACTG
Statistics
Matches: 473, Mismatches: 42, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 471 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GT
Found at i:9372861 original size:132 final size:131
Alignment explanation
Indices: 9372624--9373003 Score: 548
Period size: 132 Copynumber: 2.9 Consensus size: 131
9372614 TGGCATGAAG
* * * * **
9372624 TAGATCAAAGATAACAGATTTTATTTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATTT
1 TAGATCAAAGATAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCAG-ATTT
* *
9372689 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
65 TACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
9372754 AA
130 AA
*
9372756 TAGATCAAAGATAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTT
1 TAGATCAAAGATAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG-CAGATTT
*
9372821 TACCTCCTTATGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
65 TACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
9372886 AA
130 AA
** * * * *
9372888 TAGATTGAAGATTACAAATCATATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTT
1 TAGATCAAAGATAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT-GCAGATTT
*
9372953 TACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGT-ATTCCTATCTCC
65 TACCT-CCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATT-CTATCTCC
9373004 TTGAAGTTGC
Statistics
Matches: 225, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
131 3 0.01
132 216 0.96
133 6 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (131 bp):
TAGATCAAAGATAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCAGATTTT
ACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
A
Found at i:9372960 original size:44 final size:44
Alignment explanation
Indices: 9372733--9372978 Score: 151
Period size: 44 Copynumber: 5.6 Consensus size: 44
9372723 CCAGTAATTC
* * * * * *
9372733 TATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATAACAAATCT
1 TATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGACAGATTT
* * * *
9372777 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTT
1 TATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGACAGATTT
* * * * * * *
9372821 TACCTCCTTATGGTTA-CAGTGGAGTACAT-TAA-A-GCCAGTAATTC
1 TATCTCCCTA-GG-CAGCAGTGGAGTAGATCGAAGATGACAG--ATTT
* * * * * **
9372865 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAAATCA
1 TATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGACAGATTT
* *
9372909 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGACAGATTT
* *
9372953 TACCTCCCTGAGGTTA-CAGTGGAGTA
1 TATCTCCCT-AGG-CAGCAGTGGAGTA
9372979 CATTGAAGCC
Statistics
Matches: 150, Mismatches: 42, Indels: 19
0.71 0.20 0.09
Matches are distributed among these distances:
42 5 0.03
43 14 0.09
44 103 0.69
45 24 0.16
46 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAGTAGATCGAAGATGACAGATTT
Found at i:9374564 original size:3 final size:3
Alignment explanation
Indices: 9374558--9374615 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
9374548 TTAGTTTTTG
* *
9374558 TTA TTA TTA TTA TTA TTA TTA CTA TTA TCA TTA TTA -TA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
9374603 GTA TTA TAA TTA T
1 TTA TTA TTA TTA T
9374616 ACTTACATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:9397721 original size:27 final size:26
Alignment explanation
Indices: 9397671--9397723 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
9397661 AACTTGATAC
*
9397671 TTTTTTCTAATTTGTTATCTAAACTT
1 TTTTTTCTAATTTGGTATCTAAACTT
9397697 TTTTTATCTAATTTGGTA-CTCAAACTT
1 TTTTT-TCTAATTTGGTATCT-AAACTT
9397724 GACAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.06, T:0.57
Consensus pattern (26 bp):
TTTTTTCTAATTTGGTATCTAAACTT
Found at i:9403597 original size:20 final size:21
Alignment explanation
Indices: 9403572--9403613 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
9403562 AAATCATATT
9403572 ATTTGGTTCAATT-TTATTTA
1 ATTTGGTTCAATTATTATTTA
**
9403592 ATTTGGTTTGATTATTATTTA
1 ATTTGGTTCAATTATTATTTA
9403613 A
1 A
9403614 ATATATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (21 bp):
ATTTGGTTCAATTATTATTTA
Found at i:9407491 original size:3 final size:3
Alignment explanation
Indices: 9407483--9407508 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9407473 CAAATATCTT
9407483 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
9407509 TCTAGTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:9415279 original size:124 final size:125
Alignment explanation
Indices: 9415053--9415323 Score: 424
Period size: 124 Copynumber: 2.2 Consensus size: 125
9415043 TTATTTCGAG
* * **
9415053 TTGATGTTTCTG-GTCAAATAGTATAAAATTGCTTCTACCAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTAATACCAGGATGCTATCAGAGAAGAAATTGT
*
9415117 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAA-T-TTTT
65 GAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
9415176 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTATCA-GAGAAGAAATTG
*
9415240 TGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAGGAAATAATTATTTT
64 TGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
*
9415302 TTGATGTTTCTGAGCAAATAGT
1 TTGACGTTTCTGAGCAAATAGT
9415324 GTCAAATCAC
Statistics
Matches: 136, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
123 6 0.04
124 103 0.76
125 18 0.13
126 9 0.07
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
Found at i:9419080 original size:856 final size:856
Alignment explanation
Indices: 9417204--9419772 Score: 4836
Period size: 856 Copynumber: 3.0 Consensus size: 856
9417194 GGAGTCGTCT
9417204 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
*
9417269 TATTTCAGATCGGGGCGCCGATATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
*
9417334 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGCAATTTTCATCTAAGACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
*
9417399 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTTATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
9417464 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
9417529 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
9417594 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
9417659 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
456 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
*
9417724 ACAGAGATTGTGCGAGAGAC--ATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGACAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
* *
9417787 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAAGTAGTTCAAGAAATTAACAAGGCGA
586 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
*
9417852 ACGTGAGGGCAAACATCATGCACACAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
9417917 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
9417982 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
*
9418047 AACTCCGCCTA
846 AACTCCGCCTG
9418058 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
9418123 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
9418188 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
*
9418253 GAACGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
*
9418318 AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
9418383 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
9418448 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
*
9418513 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGTCATCTACCGATA
456 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
9418578 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
*
9418643 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTAAAGAAATTAACAAGGCGA
586 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
* * *
9418708 ACATGAGGCCAAACATCATGCACGCAGTGTGCCACGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
* * *
9418773 GAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGGAATATCGCGTACACTTGCGGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
*
9418838 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAAA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
9418903 AACTCCGCCTG
846 AACTCCGCCTG
*
9418914 GATGACTGGGATTTTTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
9418979 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
* * * *
9419044 CACACCATAGATATTGCCTGAGACACGTTACTTCGAACTACTACATGTAATTTTCATCTAATACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
9419109 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
9419174 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
* *
9419239 ATGAATAAAGATCGTTTTCACGAGATGTTGACAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
9419304 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
* *
9419369 ATATGACGTCGAACCTGACAGAATGCATAAATTCTGTTCTGAAAGGAACGCGCCATCTACCGATA
456 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
* *
9419434 ACAAAGATTGTGCGAGAGGCATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
9419499 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
586 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
*
9419564 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCAAGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
*
9419629 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCAGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
9419694 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
9419759 AACTCCGCCTG
846 AACTCCGCCTG
9419770 GAT
1 GAT
9419773 CCGCTGAGTT
Statistics
Matches: 1670, Mismatches: 43, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
854 534 0.32
856 1136 0.68
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (856 bp):
GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
AACTCCGCCTG
Found at i:9420239 original size:29 final size:29
Alignment explanation
Indices: 9420187--9420611 Score: 511
Period size: 29 Copynumber: 14.7 Consensus size: 29
9420177 CGAAATTAGG
* *
9420187 TTAGGGTTTAGGGTTCTTAGTTAAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
9420217 TTAGGGTTAGGG--TTT--TT-AATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
*
9420241 TTAGAGTTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9420270 TTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9420299 TTAGGTTTTAGGGTTCTTAATTAAATTAAA
1 TTAGG-GTTAGGGTTTTTAATTAAATTAAA
**
9420329 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9420358 TTAGGGTTTAGGGTTCTTAATTAAATTAGG
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
* *
9420388 TTAGAGTTTAGGGTTCTTAATTAAATTAAA
1 TTAG-GGTTAGGGTTTTTAATTAAATTAAA
**
9420418 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9420447 TTAGGGTTTAGGGTTCTTAATTAAAGTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
**
9420477 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9420506 TCAGGGTTTAGGGTTCTTAATTAAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
*
9420536 TTAGGGTTAGGGTTTTCAATTAAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9420565 TTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
9420594 TTAGGGTT-GGGTTTTTAA
1 TTAGGGTTAGGGTTTTTAA
9420612 ACAAATTATA
Statistics
Matches: 343, Mismatches: 42, Indels: 22
0.84 0.10 0.05
Matches are distributed among these distances:
24 18 0.05
25 2 0.01
26 3 0.01
27 2 0.01
28 12 0.03
29 174 0.51
30 131 0.38
31 1 0.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (29 bp):
TTAGGGTTAGGGTTTTTAATTAAATTAAA
Found at i:9420281 original size:59 final size:57
Alignment explanation
Indices: 9420187--9420611 Score: 419
Period size: 59 Copynumber: 7.3 Consensus size: 57
9420177 CGAAATTAGG
* *
9420187 TTAGGGTTTAGGGTTCTTAGTTAAATTAAATTAGGGTTA-GG--GTT-TTTAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTGTTATTTAATTAAA
* * **
9420241 TTAGAGTTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTGTT-ATTTAATTAAA
* * * * **
9420299 TTAGGTTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGG-GTTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTGTT-ATTTAATTAAA
* ** * * *
9420358 TTAGGGTTTAGGGTTCTTAATTAAATTAGGTTAGAGTTTAGGGTTCTTAATTAAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAATTAG-GGTTAGGGTTGTT-ATTTAATTAAA
** * * *
9420418 TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAAGTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGG-TTAGGGTTGTT-ATTTAATTAAA
** * * *
9420477 TTAGGGTTAGGGTTTTTAATTAAATTAGGTCAGGGTTTAGGGTTCTTAATTAAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGG-TTAGGGTTGTT-ATTTAATTAAA
* * **
9420536 TTAGGGTTAGGGTTTTCAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTGTT-ATTTAATTAAA
9420594 TTAGGGTT-GGGTTTTTAA
1 TTAGGGTTAGGGTTTTTAA
9420612 ACAAATTATA
Statistics
Matches: 331, Mismatches: 31, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
53 30 0.09
54 7 0.02
56 2 0.01
57 9 0.03
58 40 0.12
59 216 0.65
60 27 0.08
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (57 bp):
TTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTGTTATTTAATTAAA
Found at i:9420412 original size:148 final size:144
Alignment explanation
Indices: 9420187--9420601 Score: 631
Period size: 148 Copynumber: 2.8 Consensus size: 144
9420177 CGAAATTAGG
* * ** *
9420187 TTAGGGTTTAGGGTTCTTAGTTAAATTAAATTAGGG-TTAGGGTTTTTAATT-AA--ATTAGAGT
1 TTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTATTAGAGT
*
9420248 TAGGGTTTTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTTTAGGGT
65 TAGGG-TTTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGGGT
*
9420313 TCTTAATTAAATTAAA
129 TCTTAATTAAAGTAAA
9420329 TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAGGTTAGAG
1 TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTA--TTAGAG
*
9420394 TTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGG
64 -TTAGGGTT-TTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGG
9420459 GTTCTTAATTAAAGTAAA
127 GTTCTTAATTAAAGTAAA
* *
9420477 TTAGGGTTAGGGTTTTTAATTAAATTAGGTCAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATT--ATTAGAG
9420542 TTAGGGTTTTCAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
64 TTAGGGTTTT-AATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
9420602 GGGTTTTTAA
Statistics
Matches: 251, Mismatches: 11, Indels: 17
0.90 0.04 0.06
Matches are distributed among these distances:
141 25 0.10
142 20 0.08
143 2 0.01
145 1 0.00
146 2 0.01
147 64 0.25
148 136 0.54
150 1 0.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (144 bp):
TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTATTAGAGTT
AGGGTTTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGGGTTC
TTAATTAAAGTAAA
Found at i:9420929 original size:24 final size:24
Alignment explanation
Indices: 9420897--9420952 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
9420887 TGTATGTGGA
*
9420897 GGTGTTTGCATCATGAATGGCGAC
1 GGTGTTTGCATCATGAACGGCGAC
9420921 GGTGTTTGCATCATGAACGGCGAC
1 GGTGTTTGCATCATGAACGGCGAC
*
9420945 GGAGTTTG
1 GGTGTTTG
9420953 AAAGCCATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.29
Consensus pattern (24 bp):
GGTGTTTGCATCATGAACGGCGAC
Found at i:9422251 original size:39 final size:39
Alignment explanation
Indices: 9422226--9422320 Score: 163
Period size: 39 Copynumber: 2.4 Consensus size: 39
9422216 TCATACATTA
9422226 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
1 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
* *
9422265 GTCCATCAACATATTTAATTTCATAACAAAATATAAATT
1 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
*
9422304 GTCCATCAACATATTTA
1 ATCCATCAACATATTTA
9422321 GAAGGAAAGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (39 bp):
ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
Found at i:9422275 original size:22 final size:22
Alignment explanation
Indices: 9422250--9422314 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
9422240 TTAATTTCAT
*
9422250 AACAAGATATAAATTGTCCATC
1 AACAAAATATAAATTGTCCATC
* *
9422272 AAC-ATAT-TTAATT-T-CAT-
1 AACAAAATATAAATTGTCCATC
9422289 AACAAAATATAAATTGTCCATC
1 AACAAAATATAAATTGTCCATC
9422311 AACA
1 AACA
9422315 TATTTAGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 3 0.09
18 6 0.18
19 6 0.18
20 6 0.18
21 6 0.18
22 7 0.21
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.31
Consensus pattern (22 bp):
AACAAAATATAAATTGTCCATC
Found at i:9422278 original size:19 final size:19
Alignment explanation
Indices: 9422256--9422317 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
9422246 TCATAACAAG
9422256 ATATAAATTGTCCATCAAC
1 ATATAAATTGTCCATCAAC
* *
9422275 ATATTTAATT-T-CATAACAAA
1 ATA-TAAATTGTCCAT--CAAC
9422295 ATATAAATTGTCCATCAAC
1 ATATAAATTGTCCATCAAC
9422314 ATAT
1 ATAT
9422318 TTAGAAGGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 16 0.47
20 12 0.35
21 3 0.09
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAAATTGTCCATCAAC
Found at i:9422298 original size:20 final size:20
Alignment explanation
Indices: 9422236--9422298 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
9422226 ATCCATCAAC
*
9422236 ATATTTAATTTCATAACAAG
1 ATATTTAATTTCATAACAAA
* *
9422256 ATA-TAAATTGTCCAT--CAAC
1 ATATTTAATT-T-CATAACAAA
9422275 ATATTTAATTTCATAACAAA
1 ATATTTAATTTCATAACAAA
9422295 ATAT
1 ATAT
9422299 AAATTGTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 12 0.35
20 16 0.47
21 3 0.09
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (20 bp):
ATATTTAATTTCATAACAAA
Found at i:9422374 original size:9 final size:9
Alignment explanation
Indices: 9422356--9422401 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
9422346 CGAAGAAACA
*
9422356 TCATCATCC
1 TCATCGTCC
9422365 TCATCGTCC
1 TCATCGTCC
**
9422374 TCATCGTTG
1 TCATCGTCC
9422383 TCATCGTCC
1 TCATCGTCC
*
9422392 TCATTGTCC
1 TCATCGTCC
9422401 T
1 T
9422402 TTTGCAACCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.13, C:0.37, G:0.11, T:0.39
Consensus pattern (9 bp):
TCATCGTCC
Found at i:9424898 original size:42 final size:42
Alignment explanation
Indices: 9424851--9424970 Score: 197
Period size: 42 Copynumber: 2.9 Consensus size: 42
9424841 GTTATTAAAT
9424851 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
1 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
***
9424893 ATTTTAAATTAATTTGT-TATTAATTTGTTATAAATATATAGA
1 ATTTTAAATTAATAACTCT-TTAATTTGTTATAAATATATAGA
9424935 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATA
1 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATA
9424971 ATAAAAATTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.97
43 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (42 bp):
ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
Found at i:9425850 original size:8 final size:8
Alignment explanation
Indices: 9425837--9425881 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
9425827 TTATTTCCAG
9425837 ATATAAAC
1 ATATAAAC
9425845 ATATAAAC
1 ATATAAAC
9425853 ----AAAC
1 ATATAAAC
*
9425857 ATATAAAT
1 ATATAAAC
9425865 ATATAAAC
1 ATATAAAC
9425873 ATATAAAC
1 ATATAAAC
9425881 A
1 A
9425882 AACATTTAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
4 4 0.13
8 27 0.87
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (8 bp):
ATATAAAC
Found at i:9429670 original size:52 final size:52
Alignment explanation
Indices: 9429599--9429946 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
9429589 ATCAAGTGAC
* **
9429599 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
9429651 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
9429703 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
9429749 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
9429801 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
9429847 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
9429899 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9429947 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:9429721 original size:98 final size:98
Alignment explanation
Indices: 9429651--9429957 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
9429641 TGACAAGTGG
* *
9429651 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
9429716 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
9429749 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
9429814 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
9429847 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
9429912 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
9429945 AAAGTGATAAGTG
1 AAAGTGATAAGTG
9429958 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:9429805 original size:150 final size:144
Alignment explanation
Indices: 9429585--9429946 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
9429575 TTTGAGTACT
9429585 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
9429650 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
9429715 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
9429735 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9429800 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
9429865 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
9429879 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
9429944 CAA
60 CAA
9429947 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:9429965 original size:37 final size:37
Alignment explanation
Indices: 9429921--9430103 Score: 307
Period size: 37 Copynumber: 5.0 Consensus size: 37
9429911 GATAGCTTTA
*
9429921 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9429958 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
9429995 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
9430032 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
9430069 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9430104 ATCATACGTA
Statistics
Matches: 141, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
35 11 0.08
36 4 0.03
37 126 0.89
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:9431811 original size:29 final size:29
Alignment explanation
Indices: 9431772--9431828 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
9431762 TTGAAAATAT
9431772 TAAAAATTTTAAAATTAT-TTTAAAAAAG
1 TAAAAATTTTAAAATTATCTTTAAAAAAG
*
9431800 TAAAAATATTTAAAATTTTCTTTAAAAAA
1 TAAAAAT-TTTAAAATTATCTTTAAAAAA
9431829 ATGAAATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.27
29 10 0.38
30 9 0.35
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (29 bp):
TAAAAATTTTAAAATTATCTTTAAAAAAG
Found at i:9431889 original size:22 final size:21
Alignment explanation
Indices: 9431864--9431914 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
9431854 TAATATGGAT
*
9431864 TTGAGAGATTTTTTGAAGGAAA
1 TTGAGAGA-TTTTGGAAGGAAA
*
9431886 TTGAGAGGATTTTGGAAGGAAT
1 TTGAGA-GATTTTGGAAGGAAA
9431908 TTGAGAG
1 TTGAGAG
9431915 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (21 bp):
TTGAGAGATTTTGGAAGGAAA
Found at i:9432615 original size:15 final size:16
Alignment explanation
Indices: 9432595--9432625 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
9432585 ATCTAGGATT
9432595 TTTTTGGTAT-TTTTA
1 TTTTTGGTATATTTTA
9432610 TTTTTGGTATATTTTA
1 TTTTTGGTATATTTTA
9432626 GATAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (16 bp):
TTTTTGGTATATTTTA
Found at i:9442751 original size:60 final size:61
Alignment explanation
Indices: 9442672--9442785 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 61
9442662 TATATGGTTT
*
9442672 TTTCTTTTTTTGGTCACCTATCTATAAAAAGTTACAAAAT-GATCACCCAACTATTAGTAAA
1 TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGA-CACCCAACTATTAGTAAA
* * *
9442733 TTTC-TTTTTTGGTCACCTAACTATGAAAAGTTATAAAATGGACACGCAACTAT
1 TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGACACCCAACTAT
9442786 CCAATTTTGT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
60 42 0.88
61 6 0.12
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.37
Consensus pattern (61 bp):
TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGACACCCAACTATTAGTAAA
Found at i:9442943 original size:60 final size:60
Alignment explanation
Indices: 9442849--9442996 Score: 183
Period size: 60 Copynumber: 2.5 Consensus size: 60
9442839 AAAATCTAAG
* * *
9442849 ATAGTTGAGTGACCGAAAAAGACAAA-ATTGAATAGTTGAATGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGA-AAATACTGAATAGTTGAATGACCATTTTGTAACTTTTC
**
9442909 ATAGTTGGGTGACCAAAAAAGAAAATCACT-AATAGTTGGTTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGAAAAT-ACTGAATAGTTGAATGACCATTTTGTAACTTTTC
* * *
9442969 ATAGCTAGGTGACCAAAACAGGAAAATA
1 ATAGTTGGGTGACCAAAA-AAGAAAATA
9442997 GTTGGAATAC
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
59 3 0.04
60 65 0.84
61 9 0.12
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (60 bp):
ATAGTTGGGTGACCAAAAAAGAAAATACTGAATAGTTGAATGACCATTTTGTAACTTTTC
Found at i:9446187 original size:30 final size:30
Alignment explanation
Indices: 9446153--9446227 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
9446143 TATTAATTAT
* *
9446153 TTTTTAAAATTTAAAATATATTTTT-AATAC
1 TTTTTAAAATTTAAAAT-TATTTTTAAAAAA
**
9446183 TTTTTAATTTTTCAAAATTATTTTTAAAAAA
1 TTTTTAAAATTT-AAAATTATTTTTAAAAAA
*
9446214 TTTTTAAAAATTAA
1 TTTTTAAAATTTAA
9446228 TTAATTGTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
30 19 0.53
31 17 0.47
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (30 bp):
TTTTTAAAATTTAAAATTATTTTTAAAAAA
Found at i:9448062 original size:30 final size:29
Alignment explanation
Indices: 9448026--9448089 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
9448016 TTTTTTTATA
* *
9448026 AAAATAATATTAAAAAATAAATTAATTACG
1 AAAATAATA-CAAAAAACAAATTAATTACG
*
9448056 AAAATAATACGAAAAACAAATTAATTACG
1 AAAATAATACAAAAAACAAATTAATTACG
*
9448085 GAAAT
1 AAAAT
9448090 GAGATGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (29 bp):
AAAATAATACAAAAAACAAATTAATTACG
Found at i:9448991 original size:19 final size:19
Alignment explanation
Indices: 9448940--9448993 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
9448930 AATCTTCAAG
*
9448940 GATATGCAATCATAGATAT
1 GATATGCAATCTTAGATAT
*
9448959 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9448978 GATATGCAACCTTAGA
1 GATATGCAATCTTAGA
9448994 AGATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9449019 original size:22 final size:21
Alignment explanation
Indices: 9448953--9449019 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 21
9448943 ATGCAATCAT
9448953 AGATATGATATGTAATCTT--
1 AGATATGATATGTAATCTTAG
* *
9448972 AGATATGATATGCAACCTTAG
1 AGATATGATATGTAATCTTAG
*
9448993 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TATGTAATCTTAG
9449016 AGAT
1 AGAT
9449020 TTAATTTGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 17 0.44
22 12 0.31
23 10 0.26
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.37
Consensus pattern (21 bp):
AGATATGATATGTAATCTTAG
Found at i:9449244 original size:23 final size:23
Alignment explanation
Indices: 9449200--9449244 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
9449190 TCTTATTTTG
* *
9449200 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
9449223 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
9449245 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:9454985 original size:88 final size:88
Alignment explanation
Indices: 9454829--9455479 Score: 991
Period size: 88 Copynumber: 7.4 Consensus size: 88
9454819 AAGATAACAA
* * * *
9454829 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCTTGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9454894 GCGGAGCAGGTTAAAAATAGCAA
66 GCGGAGCAGGTTAAAAATAGCAG
* * * * * *
9454917 ATCTTGCTTTCCTGCACCAACAGCAAAGCAGATCGAAGACACTAGCCTTTCCTCCCTGGGGTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
9454982 GCGGAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* * *
9455005 ATCTTACCTTCTTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9455070 GCGGAGCAAGTTAAAAATTA-CAG
66 GCGGAGCAGGTTAAAAA-TAGCAG
* *
9455093 ATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
9455158 GCGGAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* * * * *
9455181 ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACACCAACCTTGCCT-CATGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9455245 GCGAAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* *
9455268 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTTACA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9455333 GCAGAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* * * *
9455356 ATCTTACCTTCCTGTACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9455421 GCGAAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
*
9455444 ATCTTGCCTTTCTGCACCGACAGCGAAGCAGATCGA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
9455480 TGACCCCAAC
Statistics
Matches: 507, Mismatches: 53, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
87 81 0.16
88 424 0.84
89 2 0.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (88 bp):
ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
GCGGAGCAGGTTAAAAATAGCAG
Found at i:9455166 original size:43 final size:43
Alignment explanation
Indices: 9455025--9455429 Score: 143
Period size: 44 Copynumber: 9.3 Consensus size: 43
9455015 CTTGCACCGA
*
9455025 CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTG
1 CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
* * ** * * * * * * **
9455068 TAGCGGAGCA-AGTTAAAAATTA-CAGATCTTGCCTTCATGCACCG
1 CAGCGAAGCAGA-TCGAAGA-CACCAG-CCTTGCCTCCCTGGATTG
9455112 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
1 -CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
* * ** * * * * * * ***
9455156 CAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAA
1 CAGCGAAGCAGATCGAAGACACCAG-CCTTGCCTCCCTGGA-TTG
* * * *
9455201 CAGCGAAGCAAATCGAAGACACCAACCTTGCCT-CATGGGTTG
1 CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
* * ** * * * * * * **
9455243 TAGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCG
1 CAGCGAAGCAGATCGAAGACACCAG-CCTTGCCTCCCTGGATTG
* * *
9455287 ACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTTA
1 -CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
* ** * * * * * * * **
9455331 CAGC-AGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGTACCG
1 CAGCGA-AGCAGATCGAAGACACCAG-CCTTGCCTCCCTGGATTG
* * *
9455375 ACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTG
1 -CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
9455419 CAGCGAAGCAG
1 CAGCGAAGCAG
9455430 GTTAAAAATA
Statistics
Matches: 236, Mismatches: 111, Indels: 30
0.63 0.29 0.08
Matches are distributed among these distances:
42 18 0.08
43 70 0.30
44 81 0.34
45 65 0.28
46 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (43 bp):
CAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTG
Found at i:9455377 original size:263 final size:264
Alignment explanation
Indices: 9454829--9455490 Score: 1004
Period size: 263 Copynumber: 2.5 Consensus size: 264
9454819 AAGATAACAA
* * * *
9454829 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCTTGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
* * *
9454894 GCGGAGCAGGTTAAAAATAGCAAATCTTGCTTTCCTGCACCAACAGCAAAGCAGATCGAAGACAC
66 GCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACAC
* * * * * *
9454959 TAGCCTTTCCTCCCTGGGGTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTACCTTCTTGCACCG
131 CAACCTTGCCTCCATGGGGTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
** *
9455024 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAAGTTAAAAATT
196 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCAGAGCAAGTTAAAAATT
9455089 ACAG
261 ACAG
* *
9455093 ATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGATTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9455158 GCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACAC
66 GCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACAC
* * *
9455223 CAACCTTGCCT-CATGGGTTGTAGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCG
131 CAACCTTGCCTCCATGGGGTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
* *
9455287 ACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTTACAGCAGAGCAGGTTAAAAA-T
196 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCAGAGCAAGTTAAAAATT
9455351 AGCAG
261 A-CAG
* * * *
9455356 ATCTTACCTTCCTGTACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
* * * * *
9455421 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTTCTGCACCGACAGCGAAGCAGATCGATGACCC
66 GCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACAC
9455486 CAACC
131 CAACC
9455491 CTATCTTTCT
Statistics
Matches: 361, Mismatches: 36, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
262 2 0.01
263 231 0.64
264 128 0.35
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (264 bp):
ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
GCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACAC
CAACCTTGCCTCCATGGGGTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAGCAGAGCAAGTTAAAAATT
ACAG
Found at i:9455473 original size:351 final size:352
Alignment explanation
Indices: 9454829--9455479 Score: 1083
Period size: 351 Copynumber: 1.9 Consensus size: 352
9454819 AAGATAACAA
* *
9454829 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCTTGGGTTGTA
1 ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACACCAACCTTGCCTCCATGGGTTGTA
* *
9454894 GCGGAGCAGGTTAAAAATAGCAAATCTTGCTTTCCTGCACCAACAGCAAAGCAGATCGAAGACAC
66 GCGAAGCAGGTTAAAAATAGCAAATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGAAGACAC
* * * * *
9454959 TAGCCTTTCCTCCCTGGGGTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTACCTTCTTGCACCG
131 CAGCCTTGCCTCCCTGGGGTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
* * *
9455024 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAAGTTAAAAATT
196 ACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAAGTTAAAAATT
9455089 ACAGATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGAT
261 ACAGATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGAT
9455154 TGCAGCGGAGCAGGTTAAAAATAGCAG
326 TGCAGCGGAGCAGGTTAAAAATAGCAG
9455181 ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACACCAACCTTGCCT-CATGGGTTGTA
1 ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACACCAACCTTGCCTCCATGGGTTGTA
* * *
9455245 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACAC
66 GCGAAGCAGGTTAAAAATAGCAAATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGAAGACAC
* * *
9455310 CAGTCTTGCCTCCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGTACCG
131 CAGCCTTGCCTCCCTGGGGTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
* *
9455375 ACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCAGCGAAGCAGGTTAAAAA-T
196 ACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAAGTTAAAAATT
9455439 AGCAGATCTTGCCTTTC-TGCACCGACAGCGAAGCAGATCGA
261 A-CAGATCTTGCC-TTCATGCACCGACAGCGAAGCAGATCGA
9455480 TGACCCCAAC
Statistics
Matches: 277, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
350 2 0.01
351 220 0.79
352 55 0.20
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (352 bp):
ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATCGAAGACACCAACCTTGCCTCCATGGGTTGTA
GCGAAGCAGGTTAAAAATAGCAAATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGAAGACAC
CAGCCTTGCCTCCCTGGGGTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
ACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAAGTTAAAAATT
ACAGATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGAT
TGCAGCGGAGCAGGTTAAAAATAGCAG
Found at i:9455538 original size:44 final size:44
Alignment explanation
Indices: 9455490--9455610 Score: 158
Period size: 43 Copynumber: 2.8 Consensus size: 44
9455480 TGACCCCAAC
**
9455490 CCTATCTTTCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAA-T
*
9455534 CCTATCTCCCTGGTCAG-AGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
9455577 CCTATCTCCCT-GAGCAACAGTGGAGTAGGTTGAA
1 CCTATCTCCCTGGA-CAGCAGTGGAATAGGTTGAA
9455611 AATAGTAGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
42 1 0.01
43 36 0.53
44 31 0.46
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:9456240 original size:44 final size:44
Alignment explanation
Indices: 9455974--9456298 Score: 174
Period size: 44 Copynumber: 7.5 Consensus size: 44
9455964 GAAGATGACG
*
9455974 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * *
9456018 AATCCTATCTCCCTGAAGTCGCAGT-GAGC-GATTAAAATCTC-A-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGC-CAAT
* * * ** * *
9456060 GATCATATCTCTCTGAAGTTGCA-AAGAGCAGA-T--CG-CATCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-AT
* * * *
9456100 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-T
* * * * * * * ****
9456143 AAGCCT-TCTTCCTGAAGTTGTAGT-GAGGTAGACTGAAGATGGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGA-GCAGATTAAAGCCAAT
*
9456186 GAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* * ** **
9456231 AATCTTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-AT
**
9456275 AATCTTATCTATCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
9456299 AGAGTAGATC
Statistics
Matches: 210, Mismatches: 53, Indels: 36
0.70 0.18 0.12
Matches are distributed among these distances:
37 1 0.00
40 19 0.09
41 9 0.04
42 50 0.24
43 19 0.09
44 85 0.40
45 25 0.12
46 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
Found at i:9456365 original size:45 final size:45
Alignment explanation
Indices: 9456316--9456431 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
9456306 ATCGCATTGG
* * *
9456316 GTCTTATCTCCCTGAAGTTACAGTTGAGCAGACCCAAGAAAGCGA
1 GTCTTATCTCCCTGAAGTTACAGTGGAGCACACCCAAGAAAGCAA
* * *
9456361 GTCTTATCTCCCTGAAGTTGCAGTGGAGCACACTCAAGAAATCAA
1 GTCTTATCTCCCTGAAGTTACAGTGGAGCACACCCAAGAAAGCAA
* *
9456406 GTCTTATC-CCCTTGAAATTGCAGTGG
1 GTCTTATCTCCC-TGAAGTTACAGTGG
9456432 GGCAGACTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 3 0.05
45 60 0.95
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTACAGTGGAGCACACCCAAGAAAGCAA
Found at i:9457012 original size:19 final size:19
Alignment explanation
Indices: 9456988--9457098 Score: 186
Period size: 19 Copynumber: 5.8 Consensus size: 19
9456978 AATCTTCAAG
9456988 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9457007 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9457026 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9457045 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9457064 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9457083 GATATGCAACCTTAGA
1 GATATGCAATCTTAGA
9457099 AGATATGATT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 87 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9457037 original size:38 final size:38
Alignment explanation
Indices: 9456988--9457121 Score: 196
Period size: 38 Copynumber: 3.4 Consensus size: 38
9456978 AATCTTCAAG
* *
9456988 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATATGATATGCAATCTTAGATAT
9457026 GATATGTAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATATGATATGCAATCTTAGATAT
*
9457064 GATATGTAATCTTAGATATGATATGCAACCTTAGAAGATAT
1 GATATGTAATCTTAGATATGATATGCAATCTT---AGATAT
*
9457105 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
9457122 GATTTAATTT
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
38 67 0.76
41 8 0.09
42 13 0.15
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (38 bp):
GATATGTAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:9457347 original size:23 final size:23
Alignment explanation
Indices: 9457303--9457347 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
9457293 TCTTATTTTG
* *
9457303 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
9457326 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
9457348 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:9457524 original size:20 final size:20
Alignment explanation
Indices: 9457501--9457538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9457491 ATTTGTTATT
* *
9457501 TTAATTTTTTTATTATTAAA
1 TTAATTATTTTAATATTAAA
9457521 TTAATTATTTTAATATTA
1 TTAATTATTTTAATATTA
9457539 TTAATACTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTAATTATTTTAATATTAAA
Found at i:9459268 original size:20 final size:22
Alignment explanation
Indices: 9459228--9459272 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
9459218 ATGAAATGAA
*
9459228 GTATTTAATATAAATAATATAT
1 GTATTTAATATAAACAATATAT
9459250 GTATTT-ATAT-AACAATATAT
1 GTATTTAATATAAACAATATAT
9459270 GTA
1 GTA
9459273 AAAGAGGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
GTATTTAATATAAACAATATAT
Found at i:9463957 original size:21 final size:22
Alignment explanation
Indices: 9463919--9463967 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
9463909 CTTTACATCC
*
9463919 AAAAAATTATAAATATATATAT
1 AAAAAATTATAAAAATATATAT
* * *
9463941 AAAAACTTA-AAAAATATTTTT
1 AAAAAATTATAAAAATATATAT
9463962 AAAAAA
1 AAAAAA
9463968 ATCTAAACTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAAAATTATAAAAATATATAT
Found at i:9465219 original size:59 final size:59
Alignment explanation
Indices: 9465150--9465287 Score: 179
Period size: 59 Copynumber: 2.3 Consensus size: 59
9465140 TAAATTCCGT
* *
9465150 CAAAT-GTCACTAGACTATTAATAAGTTTACATTTTGGTCAATAAAATTTAAAAAGTTA
1 CAAATGGTCACTAAACTATTAATAAGTTTACATTTTGGTCAATAAAATTCAAAAAGTTA
* * * * * *
9465208 CAAATGGTCACTAAATTATTAGTAAGTTTATATTTTGGTCACTTAACTTCAAAAAGTTA
1 CAAATGGTCACTAAACTATTAATAAGTTTACATTTTGGTCAATAAAATTCAAAAAGTTA
*
9465267 CAAAATGGTCATTAAACTATT
1 C-AAATGGTCACTAAACTATT
9465288 TGAAAGTTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 5 0.07
59 46 0.68
60 17 0.25
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.37
Consensus pattern (59 bp):
CAAATGGTCACTAAACTATTAATAAGTTTACATTTTGGTCAATAAAATTCAAAAAGTTA
Found at i:9465309 original size:60 final size:59
Alignment explanation
Indices: 9465150--9465315 Score: 158
Period size: 59 Copynumber: 2.8 Consensus size: 59
9465140 TAAATTCCGT
* * ** * * *
9465150 CAAAT-GTCACTAGACTATTA-ATAAGTTTACATTTTGGTCAATAAAATTTAAAAAGTTA
1 CAAATGGTCACTAAACTATTAGA-AAGTTTATATTTAAGTCACTAAACTTCAAAAAGTTA
* * ** *
9465208 CAAATGGTCACTAAATTATTAGTAAGTTTATATTTTGGTCACTTAACTTCAAAAAGTTA
1 CAAATGGTCACTAAACTATTAGAAAGTTTATATTTAAGTCACTAAACTTCAAAAAGTTA
* *
9465267 CAAAATGGTCATTAAACTATTTGAAAGTTT-TCATTTAAGTCACTAAACT
1 C-AAATGGTCACTAAACTATTAGAAAGTTTAT-ATTTAAGTCACTAAACT
9465316 ACTAAAATAT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
58 5 0.06
59 46 0.52
60 38 0.43
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (59 bp):
CAAATGGTCACTAAACTATTAGAAAGTTTATATTTAAGTCACTAAACTTCAAAAAGTTA
Found at i:9478775 original size:13 final size:13
Alignment explanation
Indices: 9478753--9478793 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
9478743 AGCCTAGCCC
9478753 ATATTAAATATAT
1 ATATTAAATATAT
*
9478766 ATATTTAATATAT
1 ATATTAAATATAT
**
9478779 ATAAAAAATATAT
1 ATATTAAATATAT
9478792 AT
1 AT
9478794 TTGATTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATTAAATATAT
Found at i:9478813 original size:25 final size:24
Alignment explanation
Indices: 9478762--9478818 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
9478752 CATATTAAAT
* *
9478762 ATATATATTTAATATATATAAAAA
1 ATATATATTTAATAAAAATAAAAA
* *
9478786 ATATATATTTGATTAAAAATAAGAA
1 ATATATATTT-AATAAAAATAAAAA
9478811 ATATATAT
1 ATATATAT
9478819 AATATATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATATATTTAATAAAAATAAAAA
Found at i:9481399 original size:25 final size:25
Alignment explanation
Indices: 9481367--9481418 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
9481357 ATTTTTTTTC
9481367 TTTTACATTTGAATTACCAAAACCT
1 TTTTACATTTGAATTACCAAAACCT
9481392 TTTTACATTTGAATTACCAAAACCT
1 TTTTACATTTGAATTACCAAAACCT
9481417 TT
1 TT
9481419 CTTTGACCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (25 bp):
TTTTACATTTGAATTACCAAAACCT
Found at i:9491333 original size:166 final size:166
Alignment explanation
Indices: 9490925--9491317 Score: 617
Period size: 166 Copynumber: 2.4 Consensus size: 166
9490915 CCAAAAAGCG
* * *
9490925 CCGCAAATAATTAAGTAGAACACCGTCGTTTAACTTTGACCTGTACTGGCACTAGCGGCGTTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
* * * * *
9490990 CTGGAAATGCCGGTAAAGATCTAGCATTTGCGGCGCTTATAAAACAACGCTGCTAATGACCGGTA
66 CTGGAAACGCCGGTAAAGATCAAGCAGTTGCGGCGCTTATAAAACAACGCCGCTAAAGACCGGTA
* *
9491055 CATTTGCGGCGCTAGGACAAAAACGCCACTAAGGCT
131 CATTAGCGGCGCTACGACAAAAACGCCACTAAGGCT
*
9491091 CCGAAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
*
9491156 CTGGAAACGCCGGTAAAGATCAAGCAGTTGCGGCGCTTATATAAA-AACGCCGCTAAAGATCGGT
66 CTGGAAACGCCGGTAAAGATCAAGCAGTTGCGGCGCTTATA-AAACAACGCCGCTAAAGACCGGT
* * *
9491220 ACATTAGCGGCGCTACTATAAAAACGCCACTAATGCT
130 ACATTAGCGGCGCTACGACAAAAACGCCACTAAGGCT
* *
9491257 CCGCAAATAATTAAGCAGAACGTCGTCGTTTAACTTTGACCTGTAGTGGTACTAGCGGCGT
1 CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGT
9491318 CTTTATACAA
Statistics
Matches: 208, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
166 205 0.99
167 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (166 bp):
CCGCAAATAATTAAGCAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTAT
CTGGAAACGCCGGTAAAGATCAAGCAGTTGCGGCGCTTATAAAACAACGCCGCTAAAGACCGGTA
CATTAGCGGCGCTACGACAAAAACGCCACTAAGGCT
Found at i:9491841 original size:14 final size:14
Alignment explanation
Indices: 9491808--9491844 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
9491798 TAGTGTTTAC
9491808 GGTTTAT-GTTGTA
1 GGTTTATGGTTGTA
9491821 GGTTTATGGTT-TA
1 GGTTTATGGTTGTA
9491834 GTGTTTATGGT
1 G-GTTTATGGT
9491845 GTACGTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.14, C:0.00, G:0.32, T:0.54
Consensus pattern (14 bp):
GGTTTATGGTTGTA
Found at i:9491932 original size:22 final size:22
Alignment explanation
Indices: 9491884--9491933 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
9491874 TAGAGGTGAG
*
9491884 GGCTTAGGGTTTAGGGGTTATA
1 GGCTTAGGGTCTAGGGGTTATA
*
9491906 AGCTTAGGGTCTAGGGGTTAGT-
1 GGCTTAGGGTCTAGGGGTTA-TA
9491928 GGCTTA
1 GGCTTA
9491934 AGGTTACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.18, C:0.08, G:0.40, T:0.34
Consensus pattern (22 bp):
GGCTTAGGGTCTAGGGGTTATA
Found at i:9492198 original size:21 final size:21
Alignment explanation
Indices: 9492174--9492225 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
9492164 GGTTAAGGGC
9492174 TTATGGTTTAAGGTTTAAAT-T
1 TTATGGTTTAAGGTTT-AATGT
** *
9492195 TTATATTTTAGGGTTTAATGT
1 TTATGGTTTAAGGTTTAATGT
*
9492216 TTAGGGTTTA
1 TTATGGTTTA
9492226 GCTAAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (21 bp):
TTATGGTTTAAGGTTTAATGT
Found at i:9492797 original size:83 final size:83
Alignment explanation
Indices: 9492638--9492797 Score: 221
Period size: 83 Copynumber: 1.9 Consensus size: 83
9492628 TAACAATTTG
* * *
9492638 CCAATGCGGTGCCATTTTTGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCA
1 CCAACGCGGCGCCATTTCTGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCA
* **
9492703 AAGATTTATTAAACTTTC
66 AAAATGAATTAAACTTTC
* * ** *
9492721 CCAACGCGGCGCCGTTTCTGTACTGGGAAAAATTTGATAGTGGCGTTTTTTAGGAAAACGCCGCA
1 CCAACGCGGCGCCATTTCTGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCA
9492786 AAAATGAATTAA
66 AAAATGAATTAA
9492798 CGTTTCACAA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (83 bp):
CCAACGCGGCGCCATTTCTGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCA
AAAATGAATTAAACTTTC
Found at i:9492817 original size:83 final size:83
Alignment explanation
Indices: 9492656--9492821 Score: 208
Period size: 83 Copynumber: 2.0 Consensus size: 83
9492646 GTGCCATTTT
* **
9492656 TGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCAAAGATTTATTAAACTTTC
1 TGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCAAAAATGAATTAAACTTTC
* ** *
9492721 CCAACGCGGCGCCGTTTC
66 ACAAAACAGCGCCGTTTC
* ** *
9492739 TGTACTGGGAAAAATTTGATAGTGGCGTTTTTTAGGAAAACGCCGCAAAAATGAATT-AACGTTT
1 TGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCAAAAATGAATTAAAC-TTT
*
9492803 CACAAAACATCGCCGTTTC
65 CACAAAACAGCGCCGTTTC
9492822 GCTTAATGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
82 3 0.04
83 67 0.96
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (83 bp):
TGTACTGGAAAAAAAATGATAGTGGCGTTTTTTAAGAAAACGCCGCAAAAATGAATTAAACTTTC
ACAAAACAGCGCCGTTTC
Found at i:9492885 original size:15 final size:15
Alignment explanation
Indices: 9492867--9492905 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
9492857 TCCCAGCCCC
9492867 CAGCCCCAATTTCAT
1 CAGCCCCAATTTCAT
9492882 CAGCCCCAATTTCAT
1 CAGCCCCAATTTCAT
9492897 CAGCCCCAA
1 CAGCCCCAA
9492906 ATCTCTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.28, C:0.44, G:0.08, T:0.21
Consensus pattern (15 bp):
CAGCCCCAATTTCAT
Found at i:9494579 original size:7 final size:7
Alignment explanation
Indices: 9494567--9494608 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
9494557 ATGTGAATTT
9494567 GATATTA
1 GATATTA
9494574 GATATTA
1 GATATTA
* *
9494581 CATATTT
1 GATATTA
*
9494588 GGTATT-
1 GATATTA
9494594 GATATTA
1 GATATTA
9494601 GATATTA
1 GATATTA
9494608 G
1 G
9494609 GCTGTGATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (7 bp):
GATATTA
Found at i:9494599 original size:20 final size:21
Alignment explanation
Indices: 9494563--9494606 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9494553 TTTGATGTGA
9494563 ATTTGATATTAGATATTACAT
1 ATTTGATATTAGATATTACAT
* *
9494584 ATTTGGTATT-GATATTAGAT
1 ATTTGATATTAGATATTACAT
9494604 ATT
1 ATT
9494607 AGGCTGTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (21 bp):
ATTTGATATTAGATATTACAT
Found at i:9495662 original size:21 final size:20
Alignment explanation
Indices: 9495595--9495662 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 20
9495585 TACATAACTT
*
9495595 ATTAATATATATATTTTAAA
1 ATTAATATATATATTTTTAA
*
9495615 ATT-TTATATATATTTTTAAA
1 ATTAATATATATATTTTT-AA
9495635 ATTTAATATATATATTTTTAA
1 A-TTAATATATATATTTTTAA
9495656 ATCTAAT
1 AT-TAAT
9495663 TTAGCGTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 12 0.29
20 7 0.17
21 9 0.22
22 13 0.32
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTAATATATATATTTTTAA
Found at i:9495665 original size:26 final size:22
Alignment explanation
Indices: 9495596--9495656 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
9495586 ACATAACTTA
9495596 TTAATATATATA-TTTTAAAAT
1 TTAATATATATATTTTTAAAAT
9495617 TT--TATATATATTTTTAAAAT
1 TTAATATATATATTTTTAAAAT
9495637 TTAATATATATATTTTTAAA
1 TTAATATATATATTTTTAAA
9495657 TCTAATTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.22
20 11 0.30
21 2 0.05
22 16 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATATATATATTTTTAAAAT
Found at i:9495709 original size:19 final size:19
Alignment explanation
Indices: 9495687--9495724 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9495677 TAACGTATTA
9495687 ATATATA-TTT-AAAATTT
1 ATATATATTTTAAAAATTT
9495704 ATATATATTTTAAAAATTT
1 ATATATATTTTAAAAATTT
9495723 AT
1 AT
9495725 CAATTATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 3 0.16
19 9 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATATATTTTAAAAATTT
Found at i:9495793 original size:9 final size:9
Alignment explanation
Indices: 9495779--9496126 Score: 199
Period size: 9 Copynumber: 40.4 Consensus size: 9
9495769 ACCTACACAA
9495779 TACATAACT
1 TACATAACT
9495788 TACATAATAACT
1 TAC---ATAACT
9495800 TACATAACTT
1 TACATAAC-T
*
9495810 ATATATAAACTT
1 -TACAT-AAC-T
*
9495822 ATATATAACT
1 -TACATAACT
*
9495832 TTCATAACT
1 TACATAACT
*
9495841 TAC-TTA--
1 TACATAACT
9495847 TA-ATAACT
1 TACATAACT
9495855 TACATAA--
1 TACATAACT
* *
9495862 TACATAGCC
1 TACATAACT
*
9495871 TACATGACT
1 TACATAACT
9495880 TACATAA--
1 TACATAACT
*
9495887 TACACAACT
1 TACATAACT
9495896 TACATAACT
1 TACATAACT
*
9495905 TAAATAACT
1 TACATAACT
*
9495914 TACATGA--
1 TACATAACT
9495921 TACATAACT
1 TACATAACT
*
9495930 TTCATAACT
1 TACATAACT
*
9495939 TACATTA--
1 TACATAACT
*
9495946 TACACAACT
1 TACATAACT
9495955 TACATAACT
1 TACATAACT
*
9495964 TACATTA--
1 TACATAACT
*
9495971 TACACAACT
1 TACATAACT
9495980 TACATAACT
1 TACATAACT
9495989 TACATAACT
1 TACATAACT
*
9495998 TACATAGCT
1 TACATAACT
*
9496007 TACAT-TC-
1 TACATAACT
*
9496014 TACACAACT
1 TACATAACT
9496023 TACATAA-T
1 TACATAACT
9496031 ATACATAA--
1 -TACATAACT
*
9496039 TACACAACT
1 TACATAACT
*
9496048 TACATAACA
1 TACATAACT
9496057 TACATAA--
1 TACATAACT
9496064 TACATAACT
1 TACATAACT
*
9496073 TACATAGC-
1 TACATAACT
9496081 TAGCATAA--
1 TA-CATAACT
* *
9496089 AATATAACT
1 TACATAACT
9496098 TACATAACT
1 TACATAACT
* *
9496107 TATACAA--
1 TACATAACT
9496114 TACATAACT
1 TACATAACT
9496123 TACA
1 TACA
9496127 CAATTTACTG
Statistics
Matches: 262, Mismatches: 45, Indels: 64
0.71 0.12 0.17
Matches are distributed among these distances:
6 4 0.02
7 54 0.21
8 10 0.04
9 165 0.63
10 2 0.01
11 7 0.03
12 20 0.08
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:9495799 original size:12 final size:12
Alignment explanation
Indices: 9495782--9495863 Score: 61
Period size: 12 Copynumber: 7.2 Consensus size: 12
9495772 TACACAATAC
9495782 ATAACTTACATA
1 ATAACTTACATA
9495794 ATAACTTAC---
1 ATAACTTACATA
*
9495803 ATAACTTATAT-
1 ATAACTTACATA
*
9495814 ATAAACTTATAT-
1 AT-AACTTACATA
*
9495826 ATAACTTTCATA
1 ATAACTTACATA
*
9495838 ACTTACTT--ATA
1 A-TAACTTACATA
9495849 ATAACTTACATA
1 ATAACTTACATA
9495861 ATA
1 ATA
9495864 CATAGCCTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
9 8 0.14
10 5 0.09
11 13 0.22
12 27 0.47
13 5 0.09
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:9495849 original size:32 final size:33
Alignment explanation
Indices: 9495784--9495863 Score: 101
Period size: 32 Copynumber: 2.4 Consensus size: 33
9495774 CACAATACAT
9495784 AACTTACATAATAACTTACATAACTTATATATA
1 AACTTACATAATAACTTACATAACTTATATATA
* *
9495817 AACTTATAT-ATAACTTTCATAACTTACT-TATAA
1 AACTTACATAATAACTTACATAACTTA-TATAT-A
9495850 TAACTTACATAATA
1 -AACTTACATAATA
9495864 CATAGCCTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 19 0.47
33 10 0.25
34 8 0.20
35 3 0.08
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (33 bp):
AACTTACATAATAACTTACATAACTTATATATA
Found at i:9495899 original size:25 final size:25
Alignment explanation
Indices: 9495849--9496126 Score: 212
Period size: 25 Copynumber: 11.0 Consensus size: 25
9495839 CTTACTTATA
* *
9495849 ATAACTTACATAATACATAGCCTAC
1 ATAACTTACATAATACATAACTTAC
* *
9495874 ATGACTTACATAATACACAACTTAC
1 ATAACTTACATAATACATAACTTAC
* *
9495899 ATAACTTAAATAACTTACATGA--TAC
1 ATAACTTACATAA--TACATAACTTAC
* *
9495924 ATAACTTTCATAACTTACATTA--TAC
1 ATAACTTACATAA--TACATAACTTAC
* *
9495949 ACAACTTACATAACTTACATTA--TAC
1 ATAACTTACATAA--TACATAACTTAC
*
9495974 ACAACTTACATAACTTACATAACTTAC
1 ATAACTTACATAA--TACATAACTTAC
* ** *
9496001 ATAGCTTACATTCTACACAACTTAC
1 ATAACTTACATAATACATAACTTAC
*
9496026 ATAA-TATACATAATACACAACTTAC
1 ATAACT-TACATAATACATAACTTAC
*
9496051 ATAACATACATAATACATAACTTAC
1 ATAACTTACATAATACATAACTTAC
* * *
9496076 ATAGC-TAGCATAAAATATAACTTAC
1 ATAACTTA-CATAATACATAACTTAC
* *
9496101 ATAACTTATACAATACATAACTTAC
1 ATAACTTACATAATACATAACTTAC
9496126 A
1 A
9496127 CAATTTACTG
Statistics
Matches: 213, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
24 3 0.01
25 191 0.90
26 2 0.01
27 17 0.08
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.31
Consensus pattern (25 bp):
ATAACTTACATAATACATAACTTAC
Found at i:9495901 original size:34 final size:34
Alignment explanation
Indices: 9495862--9495937 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
9495852 ACTTACATAA
* * *
9495862 TACATAGCCTACATGACTTACATAATACACAACT
1 TACATAACCTAAATAACTTACATAATACACAACT
* * *
9495896 TACATAACTTAAATAACTTACATGATACATAACT
1 TACATAACCTAAATAACTTACATAATACACAACT
*
9495930 TTCATAAC
1 TACATAAC
9495938 TTACATTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.30
Consensus pattern (34 bp):
TACATAACCTAAATAACTTACATAATACACAACT
Found at i:9495916 original size:59 final size:60
Alignment explanation
Indices: 9495842--9496078 Score: 202
Period size: 59 Copynumber: 4.0 Consensus size: 60
9495832 TTCATAACTT
* *
9495842 ACTTATAATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTACATA
1 ACTTATAATAACTTACATAATACATAACCTACATAACTTACATAATACACAACTTACATA
* * * *
9495902 ACTTA-AATAACTTACATGATACATAACTTTCATAACTTACATTATACACAACTTACATA
1 ACTTATAATAACTTACATAATACATAACCTACATAACTTACATAATACACAACTTACATA
* * * * * * * *
9495961 ACTTACATTATAC--ACA-ACTTACATAACTTACATAACTTACATAGCT-TAC-ATTCTACACA
1 ACTTATAATA-ACTTACATA-ATACATAACCTACATAACTTACATA-ATACACAACT-TACATA
* * * * *
9496020 ACTTA-CATAA-TATACATAATACACAACTTACATAACATACATAATACATAACTTACATA
1 ACTTATAATAACT-TACATAATACATAACCTACATAACTTACATAATACACAACTTACATA
9496079 GCTAGCATAA
Statistics
Matches: 141, Mismatches: 25, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 121 0.86
60 12 0.09
61 2 0.01
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (60 bp):
ACTTATAATAACTTACATAATACATAACCTACATAACTTACATAATACACAACTTACATA
Found at i:9495959 original size:34 final size:33
Alignment explanation
Indices: 9495921--9496077 Score: 128
Period size: 34 Copynumber: 4.7 Consensus size: 33
9495911 ACTTACATGA
*
9495921 TACATAACTTTCATAACTTACATTATACACAACT
1 TACATAACTTACATAACTTACATT-TACACAACT
* *
9495955 TACATAACTTACATTATAC--ACAACTTACATAACT
1 TACATAACTTACA-TA-ACTTAC-ATTTACACAACT
*
9495989 TACATAACTTACATAGCTTACATTCTACACAACT
1 TACATAACTTACATAACTTACATT-TACACAACT
* * * *
9496023 TACATAA-TATACATAA-TACACAACTTACATAACA
1 TACATAACT-TACATAACT-TAC-ATTTACACAACT
9496057 TACATAA--TACATAACTTACAT
1 TACATAACTTACATAACTTACAT
9496078 AGCTAGCATA
Statistics
Matches: 100, Mismatches: 13, Indels: 23
0.74 0.10 0.17
Matches are distributed among these distances:
31 1 0.01
32 10 0.10
33 7 0.07
34 74 0.74
35 6 0.06
36 2 0.02
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.32
Consensus pattern (33 bp):
TACATAACTTACATAACTTACATTTACACAACT
Found at i:9496042 original size:16 final size:18
Alignment explanation
Indices: 9495980--9496078 Score: 52
Period size: 16 Copynumber: 5.8 Consensus size: 18
9495970 ATACACAACT
*
9495980 TACATAACTTACATAACT-
1 TACATAACATACATAA-TA
* * *
9495998 TACATAGCTTACAT--TC
1 TACATAACATACATAATA
* *
9496014 TACACAACTTACATAATA
1 TACATAACATACATAATA
*
9496032 TACAT-A-ATACACAACT-
1 TACATAACATACATAA-TA
9496048 TACATAACATACAT-A-A
1 TACATAACATACATAATA
*
9496064 TACATAACTTACATA
1 TACATAACATACATA
9496079 GCTAGCATAA
Statistics
Matches: 64, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
15 1 0.02
16 36 0.56
17 4 0.06
18 23 0.36
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.30
Consensus pattern (18 bp):
TACATAACATACATAATA
Found at i:9496110 original size:16 final size:16
Alignment explanation
Indices: 9496098--9496130 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
9496088 AAATATAACT
9496098 TACATAACTTATACAA
1 TACATAACTTATACAA
*
9496114 TACATAACTTACACAA
1 TACATAACTTATACAA
9496130 T
1 T
9496131 TTACTGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (16 bp):
TACATAACTTATACAA
Found at i:9498791 original size:87 final size:87
Alignment explanation
Indices: 9498659--9498824 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
9498649 ACCACAGTTG
* * * *
9498659 AGGTCCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGTAGCGAGGGAAGCA
1 AGGTCCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCA
9498724 GAGGCTACAGCGAGAGACACAT
66 GAGGCTACAGCGAGAGACACAT
* * *
9498746 AGGTTCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGATGCGGCATCGAGAGAAGCA
1 AGGTCCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCA
*
9498811 GAGGCTGCAGCGAG
66 GAGGCTACAGCGAG
9498825 GGAAGCAGAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.40, C:0.19, G:0.28, T:0.13
Consensus pattern (87 bp):
AGGTCCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCA
GAGGCTACAGCGAGAGACACAT
Found at i:9498811 original size:21 final size:21
Alignment explanation
Indices: 9498785--9498834 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
9498775 CTACAACTTA
* *
9498785 AAGCAGATGCGGCATCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
* *
9498806 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
9498827 AAGCAGAG
1 AAGCAGAG
9498835 CAGAGCAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.18, G:0.42, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:9499382 original size:44 final size:43
Alignment explanation
Indices: 9499334--9499451 Score: 141
Period size: 42 Copynumber: 2.7 Consensus size: 43
9499324 CAACCAAACA
* *
9499334 ATAGCGGCGTTTGCTTGAAAAAGCGCCGCTAAAAGTCAGGTTCT
1 ATAGCGACGTTTG-TTGAAAAAGCGCCGCTAAAAGCCAGGTTCT
* *
9499378 ATAGCGACGTTTG-TGAGAAAA-CGTCGCTAAAAGCCATGTTCT
1 ATAGCGACGTTTGTTGA-AAAAGCGCCGCTAAAAGCCAGGTTCT
* * *
9499420 TTAGCGCCGTTTGTGGAAAAAGCGCCGCTAAA
1 ATAGCGACGTTTGTTGAAAAAGCGCCGCTAAA
9499452 GAACATGACC
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 36 0.57
43 15 0.24
44 12 0.19
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (43 bp):
ATAGCGACGTTTGTTGAAAAAGCGCCGCTAAAAGCCAGGTTCT
Found at i:9499603 original size:42 final size:43
Alignment explanation
Indices: 9499418--9499602 Score: 264
Period size: 43 Copynumber: 4.3 Consensus size: 43
9499408 AAGCCATGTT
* * * *
9499418 CTTTAGCGCCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGAC
1 CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATGAC
* *
9499461 CTTTAGCGGTGTTTGTAGTATAAGCACCGCTAAAGAACATGAC
1 CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATGAC
*
9499504 CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATAAC
1 CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATGAC
* * **
9499547 CTTTAGCGGCGTTTTTA-TTTTTGCGCCGCTAAAGAACATGAC
1 CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATGAC
9499589 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
9499603 TGTTTCTATA
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
42 35 0.27
43 93 0.73
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTAGTATAAGCGCCGCTAAAGAACATGAC
Found at i:9499982 original size:32 final size:32
Alignment explanation
Indices: 9499946--9500009 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
9499936 TATTTTAAAA
* *
9499946 ATAATTAAATAT-AAATATTTAAATAATTTAAT
1 ATAATTAAATATAAAATA-TAAAATAATCTAAT
*
9499978 ATAATTATATATAAAATATAAAATAATCTAAT
1 ATAATTAAATATAAAATATAAAATAATCTAAT
9500010 TTATTTACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 23 0.82
33 5 0.18
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (32 bp):
ATAATTAAATATAAAATATAAAATAATCTAAT
Found at i:9501642 original size:17 final size:17
Alignment explanation
Indices: 9501616--9501648 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9501606 TAAAAGGTAT
*
9501616 TTTTAGGATAAAAATAA
1 TTTTAAGATAAAAATAA
9501633 TTTTAAGATAAAAATA
1 TTTTAAGATAAAAATA
9501649 TTACTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
TTTTAAGATAAAAATAA
Found at i:9501939 original size:19 final size:20
Alignment explanation
Indices: 9501913--9501962 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
9501903 TTTTATTAGT
*
9501913 TATATTTTA-ATATTTAAAA
1 TATATTTTATATATTCAAAA
*
9501932 TATATTTTATATATTCAAAT
1 TATATTTTATATATTCAAAA
*
9501952 TAAATTTTATA
1 TATATTTTATA
9501963 AATAATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
TATATTTTATATATTCAAAA
Found at i:9504914 original size:29 final size:29
Alignment explanation
Indices: 9504866--9504928 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
9504856 GGAACCCAAC
* *
9504866 TAATAATTGGATTTAGTTGTAATTGCTTG
1 TAATAATTGGATTTAGTTGTAACTACTTG
*
9504895 TAATAATTGGATTT-GATTGTTACTACTTG
1 TAATAATTGGATTTAG-TTGTAACTACTTG
9504924 TAATA
1 TAATA
9504929 CTATTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.30, C:0.05, G:0.17, T:0.48
Consensus pattern (29 bp):
TAATAATTGGATTTAGTTGTAACTACTTG
Found at i:9509077 original size:23 final size:23
Alignment explanation
Indices: 9509051--9509096 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9509041 TAAGCTCTGC
9509051 ATGGTTTCACCTATTCATGCATT
1 ATGGTTTCACCTATTCATGCATT
9509074 ATGGTTTCACCTATTCATGCATT
1 ATGGTTTCACCTATTCATGCATT
9509097 TCGAGACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (23 bp):
ATGGTTTCACCTATTCATGCATT
Found at i:9512025 original size:17 final size:17
Alignment explanation
Indices: 9512003--9512035 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9511993 AGAAACCCAT
*
9512003 AAAATAAAATTAAAAAC
1 AAAATAAAACTAAAAAC
9512020 AAAATAAAACTAAAAA
1 AAAATAAAACTAAAAA
9512036 TGGCCAGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAATAAAACTAAAAAC
Found at i:9517014 original size:13 final size:13
Alignment explanation
Indices: 9516996--9517020 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9516986 CAATCAAATT
9516996 CACACAAAATAAA
1 CACACAAAATAAA
9517009 CACACAAAATAA
1 CACACAAAATAA
9517021 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:9517514 original size:15 final size:15
Alignment explanation
Indices: 9517476--9517659 Score: 163
Period size: 15 Copynumber: 12.1 Consensus size: 15
9517466 ACCCTCTGCC
9517476 GCTGTACCAAATGCT
1 GCTGTACCAAATGCT
* *
9517491 G-TAGCACCAAATGAT
1 GCT-GTACCAAATGCT
* *
9517506 GCTGTACCAAACGCC
1 GCTGTACCAAATGCT
* *
9517521 ACGGTACCAAATGCT
1 GCTGTACCAAATGCT
9517536 GCTGTACCAAATGCT
1 GCTGTACCAAATGCT
* * *
9517551 GTTGTACCAAACGTT
1 GCTGTACCAAATGCT
*
9517566 GCGGTACCAAATGCT
1 GCTGTACCAAATGCT
*
9517581 GCTGTACCAAACGCT
1 GCTGTACCAAATGCT
* *
9517596 GCGGTGCCAAATGCT
1 GCTGTACCAAATGCT
* *
9517611 GCTATACCGAAACGCT
1 GCTGTACC-AAATGCT
* *
9517627 GCGGTGCCAAATGCT
1 GCTGTACCAAATGCT
* *
9517642 ACTATACCGAAATGCT
1 GCTGTACC-AAATGCT
9517658 GC
1 GC
9517660 GATAGCAAAT
Statistics
Matches: 128, Mismatches: 37, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
14 1 0.01
15 107 0.84
16 20 0.16
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (15 bp):
GCTGTACCAAATGCT
Found at i:9525093 original size:28 final size:29
Alignment explanation
Indices: 9525051--9525118 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 29
9525041 CAGGGGACAC
*
9525051 ACGCCCGTGTGTCTCAC-GGCCAAAAGAC
1 ACGCCCGTGTGTCTCACAGGCCAAAAGAA
*
9525079 ATGCCCGTGTGTCTCACATGGCCAAAAGAA
1 ACGCCCGTGTGTCTCACA-GGCCAAAAGAA
9525109 ACGCCCGTGT
1 ACGCCCGTGT
9525119 CTCAGGCCGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 16 0.46
30 19 0.54
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (29 bp):
ACGCCCGTGTGTCTCACAGGCCAAAAGAA
Found at i:9527959 original size:18 final size:20
Alignment explanation
Indices: 9527938--9527978 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
9527928 GACATATTTA
*
9527938 TTTTGATGT-TTTTA-GTAT
1 TTTTGATGTATTATATGTAT
9527956 TTTTGATGTATTATATGTAT
1 TTTTGATGTATTATATGTAT
9527976 TTT
1 TTT
9527979 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 4 0.20
20 7 0.35
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.66
Consensus pattern (20 bp):
TTTTGATGTATTATATGTAT
Found at i:9530148 original size:60 final size:60
Alignment explanation
Indices: 9530084--9530237 Score: 177
Period size: 60 Copynumber: 2.6 Consensus size: 60
9530074 AATTGCTGCG
*
9530084 GTACCAAATGCTGCT-ATTCCAAATGTT-TCTGTACAAAACGTTACGGTAGCAAATACTACT
1 GTACCAAATGCTG-TGATACCAAATGTTGT-TGTACAAAACGTTACGGTAGCAAATACTACT
* * * ** *
9530144 GTACCAAATGCTGTGATACCAAATGTTGTTGTACCAAACGTTGCGGTAGCAAGTGTTGCT
1 GTACCAAATGCTGTGATACCAAATGTTGTTGTACAAAACGTTACGGTAGCAAATACTACT
** * *
9530204 GTACCAAATGCTACGGTACCAAATGCTGTTGTAC
1 GTACCAAATGCTGTGATACCAAATGTTGTTGTAC
9530238 TAAATGCGGA
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
59 1 0.01
60 79 0.98
61 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (60 bp):
GTACCAAATGCTGTGATACCAAATGTTGTTGTACAAAACGTTACGGTAGCAAATACTACT
Found at i:9530237 original size:15 final size:15
Alignment explanation
Indices: 9530023--9530244 Score: 140
Period size: 15 Copynumber: 14.8 Consensus size: 15
9530013 CCTCTTCCAT
*
9530023 TGTACCAAATGCTAC
1 TGTACCAAATGCTGC
* *
9530038 AGCACCAAATGCTGC
1 TGTACCAAATGCTGC
* * *
9530053 GGTACCAAATGCAGG
1 TGTACCAAATGCTGC
*
9530068 TGTACCAATTGCTGC
1 TGTACCAAATGCTGC
*
9530083 GGTACCAAATGCTGC
1 TGTACCAAATGCTGC
* * * *
9530098 TATTCCAAATGTTTC
1 TGTACCAAATGCTGC
* * * *
9530113 TGTACAAAACGTTAC
1 TGTACCAAATGCTGC
* * * *
9530128 GGTAGCAAATACTAC
1 TGTACCAAATGCTGC
9530143 TGTACCAAATGCTG-
1 TGTACCAAATGCTGC
* *
9530157 TGATACCAAATGTTGT
1 TG-TACCAAATGCTGC
* *
9530173 TGTACCAAACGTTGC
1 TGTACCAAATGCTGC
* * * *
9530188 GGTAGCAAGTGTTGC
1 TGTACCAAATGCTGC
*
9530203 TGTACCAAATGCTAC
1 TGTACCAAATGCTGC
* *
9530218 GGTACCAAATGCTGT
1 TGTACCAAATGCTGC
*
9530233 TGTACTAAATGC
1 TGTACCAAATGC
9530245 GGATGAGAAA
Statistics
Matches: 155, Mismatches: 50, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
14 2 0.01
15 151 0.97
16 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (15 bp):
TGTACCAAATGCTGC
Found at i:9530260 original size:60 final size:58
Alignment explanation
Indices: 9530142--9530261 Score: 134
Period size: 60 Copynumber: 2.0 Consensus size: 58
9530132 GCAAATACTA
** * *
9530142 CTGTACCAAATGCTGTGATACCAAATGTTGTTGTACCAAACGTTGCGGTAGCAAGTGTTG
1 CTGTACCAAATGCTACGATACCAAATGCTGTTGTACCAAAC--TGCGGTAGAAAGTGTTG
* *
9530202 CTGTACCAAATGCTACGGTACCAAATGCTGTTGTACTAAA-TGCGGATGAGAAATGTGTTG
1 CTGTACCAAATGCTACGATACCAAATGCTGTTGTACCAAACTGCGG-T-AGAAA-GTGTTG
9530262 ACAATGCGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
57 5 0.10
58 1 0.02
59 4 0.08
60 41 0.80
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (58 bp):
CTGTACCAAATGCTACGATACCAAATGCTGTTGTACCAAACTGCGGTAGAAAGTGTTG
Found at i:9534385 original size:62 final size:61
Alignment explanation
Indices: 9534284--9534402 Score: 211
Period size: 62 Copynumber: 1.9 Consensus size: 61
9534274 ATGAGATAGC
*
9534284 AGTGGTTTTGACCACATGTTGGCACATAGTGTGCAAGATTCTCGGGTATTCGATATTATTCT
1 AGTGGTTTTGACCACATGTTGGCACATAGTGTCCAAGATTCTCGGGTATTCGA-ATTATTCT
*
9534346 AGTGGTTTTGACCACATGTTGGCACATAGTGTCCGAGATTCTCGGGTATTCGAATTA
1 AGTGGTTTTGACCACATGTTGGCACATAGTGTCCAAGATTCTCGGGTATTCGAATTA
9534403 GAAGAAGGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 4 0.07
62 51 0.93
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (61 bp):
AGTGGTTTTGACCACATGTTGGCACATAGTGTCCAAGATTCTCGGGTATTCGAATTATTCT
Found at i:9536278 original size:35 final size:35
Alignment explanation
Indices: 9536232--9536301 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
9536222 GAGGTATAAA
9536232 AGAGGAAATACTTTAATTTCCTTTTCCTTGATTAT
1 AGAGGAAATACTTTAATTTCCTTTTCCTTGATTAT
9536267 AGAGGAAATACTTTAATTTCCTTTTCCTTGATTAT
1 AGAGGAAATACTTTAATTTCCTTTTCCTTGATTAT
9536302 TCTTTGTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (35 bp):
AGAGGAAATACTTTAATTTCCTTTTCCTTGATTAT
Found at i:9541561 original size:22 final size:22
Alignment explanation
Indices: 9541532--9541661 Score: 120
Period size: 22 Copynumber: 6.0 Consensus size: 22
9541522 GAAAGCACCA
*
9541532 TAAT-AGAGAGCATAAAAGTGC
1 TAATCAGAGAGCACAAAAGTGC
**
9541553 TAATCAGAGAGCACCGAAGTGC
1 TAATCAGAGAGCACAAAAGTGC
* ** *
9541575 TAAACAGAGAGCACAAATTTAC
1 TAATCAGAGAGCACAAAAGTGC
* * *
9541597 TAATCAAAGAGCACCAAAGTGT
1 TAATCAGAGAGCACAAAAGTGC
*
9541619 TGAA-CAGAGAGCACATAAGTGC
1 T-AATCAGAGAGCACAAAAGTGC
* *
9541641 TAATCAAAGAGCACCAAAGTG
1 TAATCAGAGAGCACAAAAGTG
9541662 TTGAACAGTT
Statistics
Matches: 83, Mismatches: 23, Indels: 5
0.75 0.21 0.05
Matches are distributed among these distances:
21 6 0.07
22 75 0.90
23 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.16
Consensus pattern (22 bp):
TAATCAGAGAGCACAAAAGTGC
Found at i:9541662 original size:44 final size:43
Alignment explanation
Indices: 9541536--9541669 Score: 178
Period size: 44 Copynumber: 3.0 Consensus size: 43
9541526 GCACCATAAT
* * * * *
9541536 AGAGAGCATAAAAGTGCTAATCAGAGAGCACCGAAGTGCTAAAC
1 AGAGAGCA-CAAAGTGCTAATCAAAGAGCACCAAAGTGTTGAAC
* *
9541580 AGAGAGCACAAATTTACTAATCAAAGAGCACCAAAGTGTTGAAC
1 AGAGAGCACAAA-GTGCTAATCAAAGAGCACCAAAGTGTTGAAC
9541624 AGAGAGCACATAAGTGCTAATCAAAGAGCACCAAAGTGTTGAAC
1 AGAGAGCACA-AAGTGCTAATCAAAGAGCACCAAAGTGTTGAAC
9541668 AG
1 AG
9541670 TTAATAGAGC
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.04
44 74 0.94
45 2 0.03
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (43 bp):
AGAGAGCACAAAGTGCTAATCAAAGAGCACCAAAGTGTTGAAC
Found at i:9551460 original size:21 final size:22
Alignment explanation
Indices: 9551421--9551473 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
9551411 TTCTCTTAAA
9551421 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
9551443 CTCTCAATTTCCTTCAAAAAAT-
1 CTCTCAAATTCCTTC-CAAAATC
9551465 CTCTCAAAT
1 CTCTCAAAT
9551474 CCATATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:9551560 original size:28 final size:29
Alignment explanation
Indices: 9551507--9551563 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
9551497 TCAATTTCAT
9551507 TTTTTTAAAGAAAATTTTAAATATTTTTA
1 TTTTTTAAAGAAAATTTTAAATATTTTTA
9551536 TTTTTTAAA-AATAATTTTAAA-ATTTTTA
1 TTTTTTAAAGAA-AATTTTAAATATTTTTA
9551564 AAATTTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (29 bp):
TTTTTTAAAGAAAATTTTAAATATTTTTA
Found at i:9551570 original size:29 final size:29
Alignment explanation
Indices: 9551509--9551570 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
9551499 AATTTCATTT
**
9551509 TTTTAAAGAAAATTTTAAATATTTTTATT
1 TTTTAAAGAAAATTTTAAATATTTTTAAA
9551538 TTTTAAA-AATAATTTTAAA-ATTTTTAAAA
1 TTTTAAAGAA-AATTTTAAATATTTTT-AAA
9551567 TTTT
1 TTTT
9551571 CAACAATGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
TTTTAAAGAAAATTTTAAATATTTTTAAA
Found at i:9551690 original size:14 final size:15
Alignment explanation
Indices: 9551661--9551694 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9551651 AAATTTTAAA
9551661 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
9551676 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
9551690 TTTTA
1 TTTTA
9551695 GATAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:9553525 original size:24 final size:24
Alignment explanation
Indices: 9553498--9553553 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
9553488 GCATGGCTTT
9553498 CAAACACCGTCGCCATTCATGATG
1 CAAACACCGTCGCCATTCATGATG
**
9553522 CAAACACCGTCGCTGTTCATGATG
1 CAAACACCGTCGCCATTCATGATG
9553546 CAAACACC
1 CAAACACC
9553554 TCCGCATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.20
Consensus pattern (24 bp):
CAAACACCGTCGCCATTCATGATG
Found at i:9553944 original size:28 final size:28
Alignment explanation
Indices: 9553912--9555029 Score: 854
Period size: 28 Copynumber: 40.1 Consensus size: 28
9553902 TATTAAAAAC
* *
9553912 CCTAAACTAATTTAATTAAAAACTCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9553940 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9553968 CCCTAACCCTAACCCATTTTAATTAAAAACCCTAA
1 -CCTAA-TCT-A---A-TTTAATTAAAAACCCTAA
*
9554003 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554031 CCTAATTTAATTTAATT-AAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* *
9554058 CTTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554086 CCCTAACCCATTTTAATTAAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
**
9554115 CC----CTAATTTACCCT--AAACCCTAAA
1 CCTAATCTAATTTA-ATTAAAAACCCT-AA
* * *
9554139 CCCTAACCTATTTTAATTAAAATCCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
* * * *
9554168 CCCTAATTTAATTTAATTTAAGACCCTGA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
*
9554197 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554225 CCCTAACCCATTTTAATTAAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
*
9554254 -C---TCTAATTTTAATTTAAGAACCCTAA
1 CCTAATCTAA-TTTAA-TTAAAAACCCTAA
* ***
9554280 CC----CTAATTT-GTCCTAAACCCTAAA
1 CCTAATCTAATTTAATTAAAAACCCT-AA
* *
9554304 CCCTAACCTAATTTAATTAACAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
*
9554333 CC----C-ATTTTAATTAAAAACCCT-A
1 CCTAATCTAATTTAATTAAAAACCCTAA
9554355 ---AA-CTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554379 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* *
9554407 CCTAATTTAATTTAATTAAAAACCCTTA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554435 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554463 CCCTAACCCATTTTAATTAAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
* *
9554492 CCCTAATTTAATTTAATTTTAAGAACCCTAAA
1 -CCTAATCTAATTTAA--TTAAAAACCCT-AA
* * ***
9554524 CTCTAACCTTAATTT-GTCCTAAACCCTAAA
1 C-CTAATC-TAATTTAATTAAAAACCCT-AA
*
9554554 CCCTAACCTAATTTAATTAAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
* *
9554583 CCCTAATCCATTTTAATTAAAAACCCT-A
1 -CCTAATCTAATTTAATTAAAAACCCTAA
*
9554611 ---AA-CTAATTTAATTAAAAACTCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554635 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554663 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554691 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554719 CC----C-ATTTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554742 CCCTAATTTAATTTAATTTAAAAACCCTAAA
1 -CCTAATCTAATTTAA-TTAAAAACCCT-AA
* * * **
9554773 CCCTAACCCTAATTTACCCTAAATCCTAAATACTAAA
1 -CCTAA-TCTAATTTA--ATTAA----AAACCCT-AA
* *
9554810 CCCTAACCTAATTTAATTTAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554839 CCCTAACCTATTTTAATTAAAAACGCT-A
1 -CCTAATCTAATTTAATTAAAAACCCTAA
9554867 ---AA-CTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554891 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554919 CCTTAACCCATTTTAATTAAAAACCCTAA
1 CC-TAATCTAATTTAATTAAAAACCCTAA
*
9554948 CCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
*
9554976 CC----C-ATTTTAATTAAAAACCCTAA
1 CCTAATCTAATTTAATTAAAAACCCTAA
* * *
9554999 CCCTAACCCATTTTAATTAAAAACCCTAA
1 -CCTAATCTAATTTAATTAAAAACCCTAA
9555028 CC
1 CC
9555030 ATTAACAAAA
Statistics
Matches: 899, Mismatches: 114, Indels: 154
0.77 0.10 0.13
Matches are distributed among these distances:
22 2 0.00
23 120 0.13
24 24 0.03
25 13 0.01
26 16 0.02
27 34 0.04
28 305 0.34
29 237 0.26
30 54 0.06
31 21 0.02
32 14 0.02
33 10 0.01
34 8 0.01
35 18 0.02
36 9 0.01
37 14 0.02
ACGTcount: A:0.43, C:0.24, G:0.01, T:0.33
Consensus pattern (28 bp):
CCTAATCTAATTTAATTAAAAACCCTAA
Found at i:9553967 original size:23 final size:23
Alignment explanation
Indices: 9553903--9553951 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
9553893 ACCCATTTGT
9553903 ATTAAAAACCCTAAACTAATTTA
1 ATTAAAAACCCTAAACTAATTTA
* *
9553926 ATTAAAAACTCTAACCTAATTTA
1 ATTAAAAACCCTAAACTAATTTA
9553949 ATT
1 ATT
9553952 TAATTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (23 bp):
ATTAAAAACCCTAAACTAATTTA
Found at i:9554145 original size:53 final size:52
Alignment explanation
Indices: 9554077--9554177 Score: 175
Period size: 53 Copynumber: 1.9 Consensus size: 52
9554067 ATTTAATTAA
9554077 AAACCCTAACCCTAACCCATTTTAATTAAAAACCCTAACCCTAATTTACCCT
1 AAACCCTAACCCTAACCCATTTTAATTAAAAACCCTAACCCTAATTTACCCT
* *
9554129 AAACCCTAAACCCTAACCTATTTTAATTAAAATCCCTAACCCTAATTTA
1 AAACCCT-AACCCTAACCCATTTTAATTAAAAACCCTAACCCTAATTTA
9554178 ATTTAATTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 7 0.15
53 39 0.85
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.29
Consensus pattern (52 bp):
AAACCCTAACCCTAACCCATTTTAATTAAAAACCCTAACCCTAATTTACCCT
Found at i:9554625 original size:256 final size:253
Alignment explanation
Indices: 9553919--9555029 Score: 1405
Period size: 256 Copynumber: 4.4 Consensus size: 253
9553909 AACCCTAAAC
*
9553919 TAATTTAATTAAAAACTCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCTAACCCA
1 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATT--AAA----AACCCTAACCCTAACCCA
*
9553984 TTTTAATTAAAAACCCTAA-CCTAATTTAATTTAA-TTAAAAACCCTAACCTAA-TTTAATTTAA
60 TTTTAATTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCTAACCTAACCTTAATTT-A
* **
9554046 T--TAAAACCCT-AA-CTTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAAA
124 TCCT-AAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAAA
* ** ** * *
9554107 AACCCTAACCCTAATTTACCCT--AAACCCTAAACCCTAACCTATTTTAATTAAAATCCCTAACC
188 AACCCTAA-ACTAATTTA-ATTAAAAACCCT-AA-CCTAATTTAATTTAATTAAAAACCCTAA-C
9554170 CTAATT
248 CTAATT
* * *
9554176 TAATTTAATTTAAGACCCTGACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
1 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
* * *
9554241 TTAAAAACCCTAACTCTAA--T--TTTAATTTAAGAACCCTAA-C---CC-TAATTTGTCCTAAA
66 TTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCTAACCTAACCTTAATTTATCCTAAA
9554297 CCCTAAACCCTAACCTAATTTAATT---AA--C-AACCCTAACCCATTTTAATTAAAAACCCTAA
131 CCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAAAAACCCTAA
9554356 ACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAATT
196 ACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAATT
*
9554414 TAATTTAATTAAAAACCCTTACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
1 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
* *
9554479 TTAAAAACCCTAACCCTAATTTAATTTAATTTTAAGAACCCTAAACTCTAACCTTAATTTGTCCT
66 TTAAAAACCCTAACCCTAATTTAATTTAA-TTTAAAAACCCT-AAC-CTAACCTTAATTTATCCT
*
9554544 AAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATCCATTTTAATTAAAAACCC
128 AAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAAAAACCC
*
9554609 TAAACTAATTTAATTAAAAACTCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAATT
193 TAAACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAATT
9554670 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATT--AAA----AACCCTAACCCATTTTAA
1 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
* *
9554729 TTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCTAAACCCTAACCCTAATTTACCCTA
66 TTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCT-AA-CCTAACCTTAATTTATCCTA
* *
9554794 AATCCTAAATACTAAACCCTAACCTAATTTAATTTAAAACCCTAACCCTAACCTATTTTAATTAA
129 AA-CC------CTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAA
*
9554859 AAACGCTAAACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTTA
187 AAACCCTAAACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACC-TA
**
9554924 ACC
251 ATT
* *
9554927 CATTTTAATTAAAAACCCTAACCTAATTTAATTTAATT--AAA----AACCCTAACCCATTTTAA
1 TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
*** *
9554986 TTAAAAACCCTAACCCTAACCCATTTTAA-TTAAAAACCCTAACC
66 TTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCTAACC
9555030 ATTAACAAAA
Statistics
Matches: 776, Mismatches: 42, Indels: 75
0.87 0.05 0.08
Matches are distributed among these distances:
238 87 0.11
239 25 0.03
240 11 0.01
241 38 0.05
242 6 0.01
243 12 0.02
244 5 0.01
245 13 0.02
246 4 0.01
247 14 0.02
248 6 0.01
249 46 0.06
250 90 0.12
251 37 0.05
252 4 0.01
253 2 0.00
254 5 0.01
255 6 0.01
256 246 0.32
257 119 0.15
ACGTcount: A:0.43, C:0.24, G:0.01, T:0.33
Consensus pattern (253 bp):
TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAA
TTAAAAACCCTAACCCTAATTTAATTTAATTTAAAAACCCTAACCTAACCTTAATTTATCCTAAA
CCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCATTTTAATTAAAAACCCTAA
ACTAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAATT
Found at i:9554774 original size:37 final size:36
Alignment explanation
Indices: 9554733--9554830 Score: 110
Period size: 37 Copynumber: 2.7 Consensus size: 36
9554723 TTTTAATTAA
*
9554733 AAACCCTAACCCTAATTTAATTTAAT-TTAAAAACCCT
1 AAACCCTAACCCTAATTTAATTTAATCCTAAAAA--CT
** * *
9554770 AAACCCTAACCCTAATTTACCCTAAATCCTAAATACT
1 AAACCCTAACCCTAATTTA-ATTTAATCCTAAAAACT
9554807 AAACCCTAA-CCTAATTTAATTTAA
1 AAACCCTAACCCTAATTTAATTTAA
9554831 AACCCTAACC
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
35 3 0.06
36 9 0.18
37 30 0.59
38 4 0.08
39 5 0.10
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.31
Consensus pattern (36 bp):
AAACCCTAACCCTAATTTAATTTAATCCTAAAAACT
Found at i:9558460 original size:125 final size:125
Alignment explanation
Indices: 9558238--9558504 Score: 423
Period size: 125 Copynumber: 2.1 Consensus size: 125
9558228 TTGACATTAT
*
9558238 TTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCATG
1 TTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCACG
* **
9558303 AGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCAGCGATTTTATACTAA
66 AGGGCACGATTTCACAATTTCTTCTCATATAGCATCCTGGTAGAAGCGATTTTATACTAA
*
9558363 TTGCTCAGAAAACGTCAAAAAA-AATTATTTCTTACATGACCAACTGTAGCGAAATCGCGTCCAC
1 TTGCTCAG-AAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCAC
* *
9558427 GAGGGCACGATTTCACAATTTCTTC-CCTGATAGCATCCTGGTAGAAGCGATTTTATACTAT
65 GAGGGCACGATTTCACAATTTCTTCTCAT-ATAGCATCCTGGTAGAAGCGATTTTATACTAA
9558488 TTGAC-CAGAAACGTCAA
1 TTG-CTCAGAAACGTCAA
9558505 CTCGAAATAA
Statistics
Matches: 132, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
124 11 0.08
125 107 0.81
126 14 0.11
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (125 bp):
TTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTCCACG
AGGGCACGATTTCACAATTTCTTCTCATATAGCATCCTGGTAGAAGCGATTTTATACTAA
Found at i:9558762 original size:29 final size:27
Alignment explanation
Indices: 9558727--9558780 Score: 81
Period size: 29 Copynumber: 1.9 Consensus size: 27
9558717 TCGCGGAAAA
9558727 TGGCCCATTCCGGTAAATAATTAAAAATG
1 TGGCCCATTCCGGTAAAT--TTAAAAATG
*
9558756 TGGCCCATTTCGGTAAATTTAAAAA
1 TGGCCCATTCCGGTAAATTTAAAAA
9558781 AAAGGGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.29
29 17 0.71
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (27 bp):
TGGCCCATTCCGGTAAATTTAAAAATG
Found at i:9567467 original size:16 final size:16
Alignment explanation
Indices: 9567433--9567494 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
9567423 AAAAATGTTG
* *
9567433 TTTTATTATTATTGTTT
1 TTTTACTATT-TTCTTT
*
9567450 TTTTACT-TTTTTTATT
1 TTTTACTATTTTCT-TT
*
9567466 TTCTTGCTATTTTCTTT
1 TT-TTACTATTTTCTTT
9567483 TTTTACTATTTT
1 TTTTACTATTTT
9567495 GCTACCATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 3 0.08
16 15 0.41
17 14 0.38
18 5 0.14
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTACTATTTTCTTT
Found at i:9567496 original size:24 final size:25
Alignment explanation
Indices: 9567450--9567498 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
9567440 ATTATTGTTT
*
9567450 TTTTACTTTTTTTATTTTCTTGCTA
1 TTTTACTTTTTTTATATTCTTGCTA
9567475 TTTT-CTTTTTTTACTATT-TTGCTA
1 TTTTACTTTTTTTA-TATTCTTGCTA
9567499 CCATTTTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.12, C:0.12, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTTACTTTTTTTATATTCTTGCTA
Found at i:9573399 original size:44 final size:42
Alignment explanation
Indices: 9573260--9574246 Score: 798
Period size: 44 Copynumber: 23.1 Consensus size: 42
9573250 CGCCATCGTC
* * * **
9573260 GATCTGCTTTCTTCGATCTACTTTACCACCAGTATGGGAAGACGG
1 GATCTG-TATCTTCGATCTAC-TT-CCACCAATATAGGAAGACAA
* ** * * * * * *
9573305 GATTTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAG
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * * * * *
9573348 GACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAAACAA
1 GATCTG-TATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
* * * *
9573392 GATCTGTTTTCTGCGATCTACTTCGC-CATAATATGGGAAGACAA
1 GATCTG-TATCTTCGATCTACTTC-CAC-CAATATAGGAAGACAA
* * *
9573436 GATCTGCATCTTGGATCCACTTCCTACCAATATAGGAAGACAA
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * * * * * *
9573479 GACCTACTATCTTTGGTCTACTTCACGCCAATACATGAAGACAA
1 GATCT-GTATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
* *
9573523 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTG-TATCTTCGATCTACTT--CCACCAATATAGGAAGACAA
* *
9573568 GATCTGTATTCTGCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGTA-TCTTCGATCTACTT--CCACCAATATAGGAAGACAA
* * * *
9573613 GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * *
9573656 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTG-TATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
* *
9573700 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTG-TATCTTCGATCTACTT--CCACCAATATAGGAAGACAA
* * *
9573745 GATCTGTATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * *
9573788 GATCTGCTACCTTCGATCTACTTCCTACCAATATAGGAAGATAG
1 GATCTG-TATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * *
9573832 GATCTGATATCTTCGATCTACTTCACGCCAATACATG-AGACAA
1 GATCTG-TATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
* *
9573875 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTG-TATCTTCGATCTACTT--CCACCAATATAGGAAGACAA
* * * *
9573920 GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
9573963 GATCTGCTA-CTTCGATCTACTT-CACCAATA-A-GAAG--AA
1 GATCTG-TATCTTCGATCTACTTCCACCAATATAGGAAGACAA
*
9574000 GATCTGT-TCTTCGATCTACTT-CGCCAATAT--GAAGACAA
1 GATCTGTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
*
9574038 GATCTG-CTCTTCGATC-ACTTCCACCAATAT-GGAAG--AA
1 GATCTGTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
9574075 GATCTG-ATCTTCGATC-ACTT-CACCAATAT--GAAGA-AA
1 GATCTGTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
*
9574111 GATCTGCT-TCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTG-TATCTTCGATCTACTT--CCACCAATATAGGAAGACAA
* * * *
9574155 GATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAA
* * *
9574198 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTG-TATCTTCGATCTACTTC-CACCAATATAGGAAGACAA
9574242 GATCT
1 GATCT
9574247 ACTTTAATGA
Statistics
Matches: 771, Mismatches: 125, Indels: 93
0.78 0.13 0.09
Matches are distributed among these distances:
35 4 0.01
36 42 0.05
37 41 0.05
38 29 0.04
39 8 0.01
40 1 0.00
41 16 0.02
42 12 0.02
43 176 0.23
44 333 0.43
45 107 0.14
46 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
GATCTGTATCTTCGATCTACTTCCACCAATATAGGAAGACAA
Found at i:9596892 original size:45 final size:45
Alignment explanation
Indices: 9596827--9596976 Score: 194
Period size: 45 Copynumber: 3.3 Consensus size: 45
9596817 ATGTGCCAAC
* * *
9596827 TACTGTTACTGTTACTGATTCGACACTTTGTGTGTCAAATACTAT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
* *
9596872 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
* * * * *
9596917 TACCGTTACTGTTACAGATTC-AGTATTTTGTGTGTTGAATACTGC
1 TACTGTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGT
9596962 TACTGTTACTGTTAC
1 TACTGTTACTGTTAC
9596977 TGCTATCATT
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 92 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
Found at i:9599178 original size:39 final size:40
Alignment explanation
Indices: 9599043--9599204 Score: 229
Period size: 40 Copynumber: 4.1 Consensus size: 40
9599033 GAAAACAGAC
* * *
9599043 CAGATGCTCATAATAGCTAGTCCAACTGAAACGCACTAGA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGA
* * * *
9599083 CAGATGCTTATAAGAGCTAGTCCAACTGAAACACACCAAA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGA
*
9599123 CAGATGCTCATAAGAGCTAGTCCAACCG-AACATACTAGA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGA
*
9599162 TAGATGCTCATAAGAGCTAGTCCAACCG-AACACACTAGA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGA
9599201 CAGA
1 CAGA
9599205 GAGTATAATA
Statistics
Matches: 109, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 48 0.44
40 61 0.56
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (40 bp):
CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGA
Found at i:9599182 original size:79 final size:79
Alignment explanation
Indices: 9599043--9599196 Score: 229
Period size: 79 Copynumber: 1.9 Consensus size: 79
9599033 GAAAACAGAC
* * * *
9599043 CAGATGCTCATAATAGCTAGTCCAACTGAAACGCACTAGACAGATGCTTATAAGAGCTAGTCCAA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGACAGATGCTCATAAGAGCTAGTCCAA
*
9599108 CTGAAACACACCAAA
66 CCG-AACACACCAAA
* *
9599123 CAGATGCTCATAAGAGCTAGTCCAACCG-AACATACTAGATAGATGCTCATAAGAGCTAGTCCAA
1 CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGACAGATGCTCATAAGAGCTAGTCCAA
9599187 CCGAACACAC
66 CCGAACACAC
9599197 TAGACAGAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 7 0.10
79 34 0.51
80 26 0.39
ACGTcount: A:0.39, C:0.26, G:0.17, T:0.18
Consensus pattern (79 bp):
CAGATGCTCATAAGAGCTAGTCCAACCGAAACACACTAGACAGATGCTCATAAGAGCTAGTCCAA
CCGAACACACCAAA
Found at i:9607366 original size:19 final size:18
Alignment explanation
Indices: 9607315--9607371 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
9607305 ATTTATCAAG
9607315 TTTTTATAATTTTTGAAT
1 TTTTTATAATTTTTGAAT
* *
9607333 TTTTATTTTATTTTTGAAT
1 TTTT-TATAATTTTTGAAT
* *
9607352 ATTTTTATAAATTTTAAAT
1 -TTTTTATAATTTTTGAAT
9607371 T
1 T
9607372 ATTTGCTGAC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
18 5 0.16
19 22 0.71
20 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTTATAATTTTTGAAT
Found at i:9618891 original size:30 final size:31
Alignment explanation
Indices: 9618852--9618911 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
9618842 GGAGGTGAGA
*
9618852 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
9618883 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
9618912 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:9619140 original size:9 final size:9
Alignment explanation
Indices: 9619126--9619162 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
9619116 TATAGTTTGA
9619126 TATTCGAAT
1 TATTCGAAT
9619135 TATTCGAAT
1 TATTCGAAT
9619144 TATTC-AAGT
1 TATTCGAA-T
9619153 TATTCGAAT
1 TATTCGAAT
9619162 T
1 T
9619163 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:9628116 original size:16 final size:17
Alignment explanation
Indices: 9628097--9628129 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
9628087 GAAAATGAAA
9628097 ATGAAAAA-TAAAAATG
1 ATGAAAAAGTAAAAATG
9628113 ATGAAAAAGTAAAAATG
1 ATGAAAAAGTAAAAATG
9628130 GAGAGGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
ATGAAAAAGTAAAAATG
Found at i:9629602 original size:128 final size:128
Alignment explanation
Indices: 9629369--9630239 Score: 1388
Period size: 128 Copynumber: 6.8 Consensus size: 128
9629359 TCGGTGAAAT
*
9629369 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGTTTAGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
* * *
9629434 CAGTAGCGGAGCAGATCGAAAGCGAAAAATCTTATTTTCAATAGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* *
9629497 CACAAGTCATATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCTTAAG
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
* * *
9629562 TAGTAGCGGAGCAGATCAAAAGCGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
9629625 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GAAAATTACAGATCTTGTCTCCCTAA
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAG-AAATTACAGATCTTGTCTCCCTAA
*
9629689 GCAGTAGCGGAGCAGATCGAAAGCGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
65 GCAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* * *
9629753 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTATAGATCTTGTCTCCTTAAG
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
* *
9629818 CAGTAGCAGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTACGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* *
9629881 CACATGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATTTTGTCTCCCTAAG
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
* * *
9629946 CAGTAGCGGAGCAGATCGAAAGCGGCAAATATTATCTTCAAGAGTAAGGAAGCAAATTTAAGC
66 CAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* *
9630009 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAAGTTGGGAAATTACAGATCTTGTCTCCCTAA
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-AGAAATTACAGATCTTGTCTCCCTAA
* * * *
9630074 GCAGTAGCGGAGCAGATCG-AAGACGACGAAGCTTATCTTTAAGTGTAAGGAAGCAGATTTAAGC
65 GCAGTAGCGGAGCAGATCGAAAG-CGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
* * * * *
9630138 CACAAGTCCTATCTCCTTGGTCGGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
* *
9630203 CAGTAGCGAAGCAGATCG-AAGATGACAAATCTTATCT
66 CAGTAGCGGAGCAGATCGAAAG-CGACAAATCTTATCT
9630240 CCCTGAGGAT
Statistics
Matches: 691, Mismatches: 48, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
127 1 0.00
128 579 0.84
129 111 0.16
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (128 bp):
CACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTAGAAATTACAGATCTTGTCTCCCTAAG
CAGTAGCGGAGCAGATCGAAAGCGACAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGC
Found at i:9630515 original size:44 final size:44
Alignment explanation
Indices: 9630230--9630994 Score: 153
Period size: 44 Copynumber: 17.8 Consensus size: 44
9630220 GAAGATGACA
* * *
9630230 AATCTTATCTCCCTGAGGATGTAGTGGAGTAGATTGAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * * * **
9630274 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAG-TAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * ** * * *
9630317 AGATCTTATCTCTCC-GAAGTTGCAGTAGAGTGGATCGTA-TC-AT
1 A-ATCTTATCTC-CCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* ** * *** *
9630360 -GTCTTATCTCTTTG-AGTTTGTAGTGGAGCAGACT-AAGAAAAC
1 AATCTTATCTCCCTGAAG-TTGTAGTGGAGCAGATTGAAGCCGAT
* *** * **
9630402 AAGTCTTATCCCCCTGAAGTCACAGT-GAGGCAGATCGAAGATGGCA-
1 AA-TCTTATCTCCCTGAAGTTGTAGTGGA-GCAGATTGAAG-CCG-AT
* *
9630448 AATCTTATCTCCCTGAGGATGTAGTGGAGCAGATTGAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * * **
9630492 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAG-TAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * * ** * *
9630535 AGATCTTATCT-CTTCGAAGTTGCAGTAGAGTGGATTGCA-TC-A-
1 A-ATCTTATCTCCCT-GAAGTTGTAGTGGAGCAGATTGAAGCCGAT
** * *** *
9630577 GGTCTTATCTCCC--------T-GTGGAGCAGACTG-AGAAAAC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * *** * * **
9630611 AAGTTTTATCCCCCTGAAGTCACAGTGGGGCAGACTGAAGAAG-T
1 AA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * * *
9630655 AAATCTTATCTCCCTGAGGTTGCAGTAGAGTAGATTGAAGCCGAT
1 -AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * **
9630700 AATCCTATCTCCCTGAAGTTGTAGTGGAGC-GAATTAAAG-TAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAG-ATTGAAGCCGAT
* * ** * * *
9630743 AGATCTTATCTCTCC-GAAGTTGCAGTAGAGTGGATCGCA-TC-A-
1 A-ATCTTATCTC-CCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
** * * * *** *
9630785 GGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTG-AGAAAAC
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
*** * *** **
9630828 AAGTCTTATC-CCTCTGAAGTCACAGTGGGGCAGACCAAAGAAGCA-
1 AA-TCTTATCTCC-CTGAAGTTGTAGTGGAGCAGATTGAAGCCG-AT
* * * *
9630873 AATATTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
* * * *
9630917 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAG--GAAT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCG-AT
* * * *
9630960 AGATCTTATGTCTCTGAAGTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGAT
9630995 CGCATCAAGT
Statistics
Matches: 513, Mismatches: 155, Indels: 106
0.66 0.20 0.14
Matches are distributed among these distances:
31 1 0.00
32 9 0.02
33 1 0.00
35 9 0.02
40 6 0.01
41 54 0.11
42 4 0.01
43 25 0.05
44 346 0.67
45 52 0.10
46 5 0.01
47 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCCGAT
Found at i:9630938 original size:217 final size:215
Alignment explanation
Indices: 9630213--9631007 Score: 1172
Period size: 217 Copynumber: 3.7 Consensus size: 215
9630203 CAGTAGCGAA
* * * *
9630213 GCAGATCGAAGATGACAAATCTTATCTCCCTGAGGATGTAGTGGAGTAGATTGAAGCCGATAATC
1 GCAGACCGAAGAAG-CAAATCTTATCTCCCTGAGGATGCAGTGGAGCAGATTGAAGCCGATAATC
*
9630278 CTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGT
65 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGT
* * ** *
9630343 AGAGTGGATCGTATCATGTCTTATCTCTTTGAGTTTGTAGTGGAGCAGACTAAGAAAACAAGTCT
130 AGAGTGGATCGCATCAGGTCTTATCTCCCTGAG-TTG-AGTGGAGCAGACTGAGAAAACAAGTCT
*
9630408 TATCCCCCTGAAGTCACAGTGAG
193 TATCCCCCTGAAGTCACAGTGGG
* * *
9630431 GCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGATGTAGTGGAGCAGATTGAAGCCGATAATC
1 GCAGACCGAAGA-AGCAAATCTTATCTCCCTGAGGATGCAGTGGAGCAGATTGAAGCCGATAATC
*
9630496 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTTCGAAGTTGCAGT
65 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGT
* *
9630561 AGAGTGGATTGCATCAGGTCTTATCTCCC-----T--GTGGAGCAGACTGAGAAAACAAGTTTTA
130 AGAGTGGATCGCATCAGGTCTTATCTCCCTGAGTTGAGTGGAGCAGACTGAGAAAACAAGTCTTA
9630619 TCCCCCTGAAGTCACAGTGGG
195 TCCCCCTGAAGTCACAGTGGG
* * * * *
9630640 GCAGACTGAAGAAGTAAATCTTATCTCCCTGAGGTTGCAGTAGAGTAGATTGAAGCCGATAATCC
1 GCAGACCGAAGAAGCAAATCTTATCTCCCTGAGGATGCAGTGGAGCAGATTGAAGCCGATAATCC
*
9630705 TATCTCCCTGAAGTTGTAGTGGAGCGAATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGTA
66 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGTA
9630770 GAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTCTT
131 GAGTGGATCGCATCAGGTCTTATCTCCCTGA-GTTG-AGTGGAGCAGACTGAGAAAACAAGTCTT
*
9630835 ATCCCTCTGAAGTCACAGTGGG
194 ATCCCCCTGAAGTCACAGTGGG
* * * *
9630857 GCAGACCAAAGAAGCAAATATTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGATAATCC
1 GCAGACCGAAGAAGCAAATCTTATCTCCCTGAGGATGCAGTGGAGCAGATTGAAGCCGATAATCC
* * * *
9630922 TATCTCCCTGAAGTTGTAGTGGAGCGGGTTAAAGGAATAGATCTTATGTCTCTGAAGTTGCAGTA
66 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGTA
** *
9630987 GAGCAGATCGCATCAAGTCTT
131 GAGTGGATCGCATCAGGTCTT
9631008 GCTGACTAGA
Statistics
Matches: 527, Mismatches: 40, Indels: 21
0.90 0.07 0.04
Matches are distributed among these distances:
208 137 0.26
209 56 0.11
212 1 0.00
214 1 0.00
217 183 0.35
218 148 0.28
219 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (215 bp):
GCAGACCGAAGAAGCAAATCTTATCTCCCTGAGGATGCAGTGGAGCAGATTGAAGCCGATAATCC
TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCCGAAGTTGCAGTA
GAGTGGATCGCATCAGGTCTTATCTCCCTGAGTTGAGTGGAGCAGACTGAGAAAACAAGTCTTAT
CCCCCTGAAGTCACAGTGGG
Found at i:9632589 original size:17 final size:18
Alignment explanation
Indices: 9632567--9632601 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9632557 TAGTACTTTA
9632567 ATTTATAACAT-ATTATT
1 ATTTATAACATAATTATT
*
9632584 ATTTATCACATAATTATT
1 ATTTATAACATAATTATT
9632602 TGAAGTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTATAACATAATTATT
Done.