Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 33 of 199
Found at i:10412585 original size:7 final size:7
Alignment explanation
Indices: 10412573--10412597 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10412563 AACACATATT
10412573 AACCTTA
1 AACCTTA
10412580 AACCTTA
1 AACCTTA
10412587 AACCTTA
1 AACCTTA
10412594 AACC
1 AACC
10412598 CCAACCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (7 bp):
AACCTTA
Found at i:10412608 original size:21 final size:20
Alignment explanation
Indices: 10412580--10412618 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10412570 ATTAACCTTA
*
10412580 AACCTTAAACCTTAAACCCC
1 AACCTTAAACCATAAACCCC
10412600 AACCTTTAAACCATAAACC
1 AACC-TTAAACCATAAACC
10412619 ATAGACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.21
Consensus pattern (20 bp):
AACCTTAAACCATAAACCCC
Found at i:10412889 original size:115 final size:114
Alignment explanation
Indices: 10412678--10413235 Score: 399
Period size: 115 Copynumber: 4.9 Consensus size: 114
10412668 ATGCATGGTT
* * *
10412678 AAGACCAAAACTCTGCGTTTTGGTTAATACATTTTCCGGCGCTTATCAAAAAGCGCCGCTAATAC
1 AAGACTAAAACTCTGCGTTTTGGTTAATATATTTTGCGGCGCTTAT-AAAAAGCGCCGCTAATAC
* * * *
10412743 CATGCTTTAGCGGCGATTTCTCGTGAA-CGCCACTAATTCCAGTATACATC
65 TATACTTTAGCGGCGGTTTCTCAT-AAGCGCCACTAATTCCAGTATACATC
* * * * *
10412793 AAGACTTAAACGCTGCGTTTTTGTTAATATCTTTTGCGGCGCTTATAAAAGAGCGCCGCTAATAA
1 AAGACTAAAACTCTGCGTTTTGGTTAATATATTTTGCGGCGCTTATAAAA-AGCGCCGCTAATAC
* * * * * *
10412858 TATACTTTAGCGGCGGTCTC-CAAAAAGCGCCATTAATTCTAATATACCTC
65 TATACTTTAGCGGCGGTTTCTC-ATAAGCGCCACTAATTCCAGTATACATC
* * * * * * * *
10412908 ATG--TAAAAACTCAGCGTTTTGGTGAGTATATTTTGCGGCGCTTGTGCAGAAGCGCCACTAATA
1 AAGACT-AAAACTCTGCGTTTTGGTTAATATATTTTGCGGCGCTTAT-AAAAAGCGCCGCTAATA
* * * ** *
10412971 CTATGA-TTTAGCGGC-GTTTCTTTATATGCGCCACTAGTAACTGTATACATC
64 CTAT-ACTTTAGCGGCGGTTTC-TCATAAGCGCCACTAATTCCAGTATACATC
* * * * *
10413022 GAGACAAAAACGT-TGCGTTTTTGTT-GTCAAATTTTGCGGCGCTTATACAAAAGCGCCGCTAAT
1 AAGACTAAAAC-TCTGCGTTTTGGTTAAT-ATATTTTGCGGCGCTTATA-AAAAGCGCCGCTAAT
* * * * * *
10413085 AGTATACATTAGTGGCGTGTTCGCTC-T--GCGCCACTAATTCTAGTATACCTC
63 ACTATACTTTAGCGGCG-GTT-TCTCATAAGCGCCACTAATTCCAGTATACATC
* * ** * *
10413136 AAGAC-CAAACTCTGCGTTTTGGTTAAGAGGTTTTGCGGCGCTTACCACAACA-CGCCGCTAATA
1 AAGACTAAAACTCTGCGTTTTGGTTAATATATTTTGCGGCGCTTA-TA-AAAAGCGCCGCTAATA
* *
10413199 TTATACTTTACCGGC-GTTT-TACATTAAGCGCCACTAA
64 CTATACTTTAGCGGCGGTTTCT-CA-TAAGCGCCACTAA
10413236 CTGTAACATA
Statistics
Matches: 339, Mismatches: 79, Indels: 51
0.72 0.17 0.11
Matches are distributed among these distances:
109 1 0.00
110 1 0.00
111 3 0.01
112 2 0.01
113 57 0.17
114 122 0.36
115 146 0.43
116 2 0.01
117 4 0.01
118 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (114 bp):
AAGACTAAAACTCTGCGTTTTGGTTAATATATTTTGCGGCGCTTATAAAAAGCGCCGCTAATACT
ATACTTTAGCGGCGGTTTCTCATAAGCGCCACTAATTCCAGTATACATC
Found at i:10413085 original size:229 final size:228
Alignment explanation
Indices: 10412684--10413101 Score: 513
Period size: 229 Copynumber: 1.8 Consensus size: 228
10412674 GGTTAAGACC
* * * *
10412684 AAAACTCTGCGTTTTGGTTAATACATTTTCCGGCGCTTATCAAAAAGCGCCGCTAATACCATGCT
1 AAAACTCAGCGTTTTGGTGAATACATTTTCCGGCGCTTATCAAAAAGCGCCACTAATACCATGAT
** **
10412749 TTAGCGGCGATTTCTCGTGAACGCCACTAATTCCAGTATACATCAAGACTTAAACGCTGCGTTTT
66 TTAGCGGCGATTTCTC-TGAACGCCACTAATAACAGTATACATCAAGACAAAAACGCTGCGTTTT
** *
10412814 TGTTAATATCTTTTGCGGCGCTTATAAAAGAGCGCCGCTAATAATATACTTTAGCGGCGGTCTCC
130 TGTTAATAAATTTTGCGGCGCTTATAAAAGAGCGCCGCTAATAATATACATTAGCGGCGGTCTCC
10412879 AAAAAGCGCCATTAATTCTAATATACCTCATGTA
195 AAAAAGCGCCATTAATTCTAATATACCTCATGTA
* * * * * *
10412913 AAAACTCAGCGTTTTGGTGAGTATATTTTGCGGCGCTTGTGC-AGAAGCGCCACTAATACTATGA
1 AAAACTCAGCGTTTTGGTGAATACATTTTCCGGCGCTTAT-CAAAAAGCGCCACTAATACCATGA
* * * * *
10412977 TTTAGCGGCG-TTTCT-TTATATGCGCCACTAGTAACTGTATACATCGAGACAAAAACGTTGCGT
65 TTTAGCGGCGATTTCTCTGA-A--CGCCACTAATAACAGTATACATCAAGACAAAAACGCTGCGT
* * *
10413040 TTTTGTT-GTCAAATTTTGCGGCGCTTATACAAA-AGCGCCGCTAATAGTATACATTAGTGGCG
127 TTTTGTTAAT-AAATTTTGCGGCGCTTATA-AAAGAGCGCCGCTAATAATATACATTAGCGGCG
10413102 TGTTCGCTCT
Statistics
Matches: 158, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
226 2 0.01
227 1 0.01
228 6 0.04
229 145 0.92
230 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (228 bp):
AAAACTCAGCGTTTTGGTGAATACATTTTCCGGCGCTTATCAAAAAGCGCCACTAATACCATGAT
TTAGCGGCGATTTCTCTGAACGCCACTAATAACAGTATACATCAAGACAAAAACGCTGCGTTTTT
GTTAATAAATTTTGCGGCGCTTATAAAAGAGCGCCGCTAATAATATACATTAGCGGCGGTCTCCA
AAAAGCGCCATTAATTCTAATATACCTCATGTA
Found at i:10417537 original size:4 final size:4
Alignment explanation
Indices: 10417528--10417557 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
10417518 TTAGCTTTCA
10417528 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
10417558 AAGACTCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:10425284 original size:13 final size:13
Alignment explanation
Indices: 10425266--10425290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10425256 TTCACAATAT
10425266 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
10425279 TTTTCAAAAGCA
1 TTTTCAAAAGCA
10425291 AAAAATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:10426821 original size:25 final size:24
Alignment explanation
Indices: 10426766--10426823 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 24
10426756 ATCAAATACA
*
10426766 CTAAAAACATTAAAATAAATATTT
1 CTAAAAAAATTAAAATAAATATTT
* * *
10426790 CTCAAAAAATTAAAAATAATTGTTT
1 CTAAAAAAATT-AAAATAAATATTT
*
10426815 TTAAAAAAA
1 CTAAAAAAA
10426824 CTCTTTGTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.33
Consensus pattern (24 bp):
CTAAAAAAATTAAAATAAATATTT
Found at i:10427920 original size:16 final size:16
Alignment explanation
Indices: 10427899--10427932 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10427889 TATATTCAAT
*
10427899 ATTTTATAGATTTATA
1 ATTTTATAGATTAATA
*
10427915 ATTTTATTGATTAATA
1 ATTTTATAGATTAATA
10427931 AT
1 AT
10427933 ATATTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
ATTTTATAGATTAATA
Found at i:10427962 original size:14 final size:14
Alignment explanation
Indices: 10427943--10427970 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10427933 ATATTATATT
10427943 ATTTTTTAAAAATA
1 ATTTTTTAAAAATA
10427957 ATTTTTTAAAAATA
1 ATTTTTTAAAAATA
10427971 TGACCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTTTAAAAATA
Found at i:10429495 original size:13 final size:11
Alignment explanation
Indices: 10429467--10429509 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
10429457 AGTTAAAAAT
10429467 TATTTTATTAA
1 TATTTTATTAA
10429478 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
10429491 TA-TTTATTAT
1 TATTTTATTAA
10429501 TATTTTATT
1 TATTTTATT
10429510 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:10429496 original size:23 final size:23
Alignment explanation
Indices: 10429470--10429513 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10429460 TAAAAATTAT
10429470 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
10429493 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
10429514 AAATGGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:10432328 original size:21 final size:25
Alignment explanation
Indices: 10432304--10432351 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
10432294 TAGCGTTTTC
10432304 TTGTTA-TG-TGTTATT-TT-ATTA
1 TTGTTATTGTTGTTATTATTCATTA
10432325 TTGTTATTGTTGTTATTATTCATTA
1 TTGTTATTGTTGTTATTATTCATTA
10432350 TT
1 TT
10432352 TGTCTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.26
22 2 0.09
23 7 0.30
24 2 0.09
25 6 0.26
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (25 bp):
TTGTTATTGTTGTTATTATTCATTA
Found at i:10433453 original size:18 final size:17
Alignment explanation
Indices: 10433421--10433461 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
10433411 TTTGTAAAAC
10433421 TTTAATATTTGTGTTAAT
1 TTTAATATTTGTGTT-AT
10433439 TTTATATATTT-TGTTAT
1 TTTA-ATATTTGTGTTAT
10433456 TTTAAT
1 TTTAAT
10433462 TGAATATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 8 0.36
19 6 0.27
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (17 bp):
TTTAATATTTGTGTTAT
Found at i:10441587 original size:4 final size:4
Alignment explanation
Indices: 10441578--10441631 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
10441568 ACACAAGTGT
10441578 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
10441626 TACA TA
1 TACA TA
10441632 TGTACGTACG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:10441824 original size:20 final size:20
Alignment explanation
Indices: 10441801--10441838 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10441791 AATATAAACA
10441801 TGTATAAACAAACACGAACT
1 TGTATAAACAAACACGAACT
*
10441821 TGTATAAATAAACACGAA
1 TGTATAAACAAACACGAA
10441839 AATAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.16, G:0.11, T:0.21
Consensus pattern (20 bp):
TGTATAAACAAACACGAACT
Found at i:10447108 original size:9 final size:9
Alignment explanation
Indices: 10447094--10447130 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
10447084 TATAGTTTGA
10447094 TATTCGAAT
1 TATTCGAAT
10447103 TATTCGAAT
1 TATTCGAAT
*
10447112 TATTCGAGT
1 TATTCGAAT
10447121 TATTCGAAT
1 TATTCGAAT
10447130 T
1 T
10447131 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:10447723 original size:13 final size:13
Alignment explanation
Indices: 10447705--10447731 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10447695 GGTTTTACAG
10447705 ACTAAGTTCTCAA
1 ACTAAGTTCTCAA
10447718 ACTAAGTTCTCAA
1 ACTAAGTTCTCAA
10447731 A
1 A
10447732 GGGAGAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTAAGTTCTCAA
Found at i:10448351 original size:19 final size:19
Alignment explanation
Indices: 10448327--10448385 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 19
10448317 AATAGGAAAG
10448327 ATATATAATGTATTTCT-A
1 ATATATAATGTATTTCTAA
**
10448345 A-ATAT-ATG--TTTAAAA
1 ATATATAATGTATTTCTAA
10448360 GATATATAATGTATTTCTAA
1 -ATATATAATGTATTTCTAA
10448380 ATATAT
1 ATATAT
10448386 GTTTAAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 11
0.67 0.09 0.24
Matches are distributed among these distances:
14 3 0.10
15 1 0.03
16 4 0.13
17 8 0.26
18 4 0.13
19 6 0.19
20 5 0.16
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (19 bp):
ATATATAATGTATTTCTAA
Found at i:10448409 original size:34 final size:34
Alignment explanation
Indices: 10448323--10448399 Score: 154
Period size: 34 Copynumber: 2.3 Consensus size: 34
10448313 CAAGAATAGG
10448323 AAAGATATATAATGTATTTCTAAATATATGTTTA
1 AAAGATATATAATGTATTTCTAAATATATGTTTA
10448357 AAAGATATATAATGTATTTCTAAATATATGTTTA
1 AAAGATATATAATGTATTTCTAAATATATGTTTA
10448391 AAAGATATA
1 AAAGATATA
10448400 CAACATATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.42
Consensus pattern (34 bp):
AAAGATATATAATGTATTTCTAAATATATGTTTA
Found at i:10450388 original size:80 final size:80
Alignment explanation
Indices: 10450285--10451040 Score: 564
Period size: 80 Copynumber: 9.3 Consensus size: 80
10450275 TATTGTAACT
*
10450285 TTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
10450350 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
*
10450365 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
*
10450430 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
* * *
10450445 TTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTT-TTTTATGAA-T-A--TTATAAT
1 TTTTGTATGAATATTGTAA--TTTTGTATGAATATTGTAATTATTTTAT-AATTAATTTTGTAAT
* *
10450505 TAT--TTTATAATTA--A
63 TATAGTTTTTGATTAGTA
* * *
10450519 TTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATT-TTGTATGAA-T-A--T
1 TTTTGTA-TGA-A--TATTG--TA--ATTTTGTATGAATATTGTAATTATTTTAT-AATTAATTT
* * *
10450579 TGTAATT-TTGTAATTTTGCATGAATA
57 TGTAATTATAGT--TTTTG-ATTAGTA
** * ** * * * * **
10450605 TTGTAAT-TATTTTATAAT-TAATTTTGTATTTATAGTTTTGGATTAGTATTT-TGTATGAATAG
1 TT-T--TGTA-TGAATATTGTAATTTTGTATGAATA-TTGT-AATTA-T-TTTAT-AATTAATTT
*
10450667 TGTAATT-T--TTTGTATGAATATTGTAA
57 TGTAATTATAGTTT-T-TG-AT-TAGT-A
* * * *
10450693 TTTTTTATGAATATTGTAATTATT-T-T--ATAAT-TAATT-TTGTAT--TTATAGTTTTG-GAT
1 TTTTGTATGAATATTGTAATT-TTGTATGAATATTGTAATTATTTTATAATTA-A-TTTTGTAAT
* *
10450749 TAGTATTTTGTATGAATAGCGTAA
63 TA-TAGTTT-T-TGATTA--GT-A
* *
10450773 TTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTT
1 --TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATT
10450838 ATAGTTTTTGATTAGTA
64 ATAGTTTTTGATTAGTA
* *
10450855 TTTTGTATGAATATTGTAATTTTGTATGAATACTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
10450920 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* * * *
10450935 TTTTGTATGAATATTATAATGTTGTATGAATATTGTAATTATCTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
*
10451000 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
*
10451015 TTTTGTATGAATATTTTAATTTTGTA
1 TTTTGTATGAATATTGTAATTTTGTA
10451041 ATTTTGTAAT
Statistics
Matches: 557, Mismatches: 62, Indels: 114
0.76 0.08 0.16
Matches are distributed among these distances:
74 8 0.01
75 4 0.01
76 12 0.02
77 5 0.01
78 15 0.03
79 2 0.00
80 339 0.61
81 14 0.03
82 51 0.09
83 9 0.02
84 9 0.02
85 21 0.04
86 23 0.04
87 21 0.04
88 20 0.04
89 4 0.01
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAATTAT
AGTTTTTGATTAGTA
Found at i:10450497 original size:101 final size:101
Alignment explanation
Indices: 10450365--10450901 Score: 889
Period size: 101 Copynumber: 5.3 Consensus size: 101
10450355 TTGATTAGTA
*
10450365 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
10450430 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
* *
10450466 TTTTGTATGAATATTGTACTTTTTTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
* *
10450531 AGTTTTTGATTAGTATTTTGTATGAATATTGTAATT
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
* **
10450567 TTGTATGAATATTGTAATTTTGTAATTTTGCATGAATATTGTAATTATTTTATAATTAATTTTGT
1 TT-T-TG--TA-TG-AATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGT
10450632 ATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
60 ATTTATAGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
10450674 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
*
10450739 AGTTTTGGATTAGTATTTTGTATGAATAGCGTAATT
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
10450775 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
* *
10450840 AGTTTTTGATTAGTATTTTGTATGAATATTGTAA--
66 AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
*
10450874 TTTTGTATGAATACTGTAATTATTTTAT
1 TTTTGTATGAATATTGTAATT-TTTTAT
10450902 AATTAATTTT
Statistics
Matches: 409, Mismatches: 20, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
99 20 0.05
100 6 0.01
101 282 0.69
102 3 0.01
103 4 0.01
105 4 0.01
106 3 0.01
107 87 0.21
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (101 bp):
TTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTGGATTAGTATTTTGTATGAATAGTGTAATT
Found at i:10450590 original size:27 final size:27
Alignment explanation
Indices: 10450559--10450612 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
10450549 TGTATGAATA
*
10450559 TTGTAATTTTGTATGAATATTGTAATT
1 TTGTAATTTTGCATGAATATTGTAATT
10450586 TTGTAATTTTGCATGAATATTGTAATT
1 TTGTAATTTTGCATGAATATTGTAATT
10450613 ATTTTATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.54
Consensus pattern (27 bp):
TTGTAATTTTGCATGAATATTGTAATT
Found at i:10450608 original size:19 final size:19
Alignment explanation
Indices: 10450260--10451200 Score: 300
Period size: 19 Copynumber: 46.3 Consensus size: 19
10450250 GCGCCAATGG
*
10450260 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
10450279 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
10450300 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
10450319 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
10450342 GTAATTATAGTTTTTG-AT-TA
1 GTAATT-T--TGTATGAATATT
10450362 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
10450380 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
10450399 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
10450422 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
10450442 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
10450460 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
* *
10450481 GTACTTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
* *
10450500 ATAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
10450516 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
10450538 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
10450561 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
10450580 GTAATTTTGTAATTTTGCATGAATATT
1 GTAATTTTG------T--ATGAATATT
*
10450607 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
10450630 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
*
10450650 GT-ATTTTGTATGAATAGT
1 GTAATTTTGTATGAATATT
10450668 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
10450689 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
10450708 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
10450731 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
**
10450751 GT-ATTTTGTATGAATAGC
1 GTAATTTTGTATGAATATT
10450769 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
10450790 GTAATTTTTTATGAATATT
1 GTAATTTTGTATGAATATT
*
10450809 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
10450825 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
10450847 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
*
10450870 GTAATTTTGTATGAATACT
1 GTAATTTTGTATGAATATT
*
10450889 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
10450905 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
10450927 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
* *
10450950 ATAATGTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* * *
10450969 GTAATTATCTTATAATTAATTTT
1 GTAA-T-T-TTGT-ATGAATATT
* * *
10450992 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
10451012 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
10451030 TTAATTTTG--T-AATTTT
1 GTAATTTTGTATGAATATT
10451046 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
10451065 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
*
10451088 GTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATT
10451107 GTGATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
10451130 GTAATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
*
10451153 GTAATTTTGTATGGATATT
1 GTAATTTTGTATGAATATT
10451172 GTGATATTGTTTGTATGAATATT
1 GT-A-A-T-TTTGTATGAATATT
10451195 GTAATT
1 GTAATT
10451201 ATTTTATAAT
Statistics
Matches: 711, Mismatches: 85, Indels: 252
0.68 0.08 0.24
Matches are distributed among these distances:
14 6 0.01
15 18 0.03
16 29 0.04
17 26 0.04
18 20 0.03
19 234 0.33
20 71 0.10
21 92 0.13
22 30 0.04
23 110 0.15
24 10 0.01
25 18 0.03
26 6 0.01
27 39 0.05
28 2 0.00
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.56
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:10450629 original size:208 final size:207
Alignment explanation
Indices: 10450378--10450974 Score: 895
Period size: 208 Copynumber: 3.0 Consensus size: 207
10450368 TGTATGAATA
10450378 TTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
1 TTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
10450443 TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATTATAATTAT
66 TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATT-TAATTAT
10450508 TTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTAT
130 TTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTAT
10450573 GAATATTGTAATT
195 GAATATTGTAATT
*
10450586 TTGTAATTTTGCATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
1 TTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
*
10450651 TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTAATTTTTTATGAATATTGTAATTAT
66 TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATT-TAATTAT
* **
10450716 TTTATAATTAATTTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATAGCGTAATTTT-T-T
130 TTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTAT
*
10450779 G--TA-TG-AATA
195 GAATATTGTAATT
* *
10450788 TTGTAATTTTTTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAG
1 TTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
*
10450853 TATTTTGTATGAATATTGTAA--TTTTGTATG-A-A---TAC-------TG------TAATTATT
66 TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATTTAATTATT
* *
10450898 TTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTATAATGTTGTATG
131 TTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTATG
10450963 AATATTGTAATT
196 AATATTGTAATT
10450975 ATCTTATAAT
Statistics
Matches: 365, Mismatches: 18, Indels: 33
0.88 0.04 0.08
Matches are distributed among these distances:
181 63 0.17
182 1 0.00
183 2 0.01
185 2 0.01
186 2 0.01
187 3 0.01
188 2 0.01
195 2 0.01
198 1 0.00
199 1 0.00
200 9 0.02
202 85 0.23
203 2 0.01
204 2 0.01
206 2 0.01
207 1 0.00
208 185 0.51
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (207 bp):
TTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAG
TATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATTTAATTATT
TTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTATG
AATATTGTAATT
Found at i:10450631 original size:181 final size:178
Alignment explanation
Indices: 10450261--10450633 Score: 525
Period size: 181 Copynumber: 2.1 Consensus size: 178
10450251 CGCCAATGGG
* * *
10450261 TAATTTTGTATGTATATTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTA
1 TAATTTTGTATGAATAGTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTATAATTA
10450326 TTTTATAATTAATTTTGTAATTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTA
66 TTTTATAATTAATTTTGTAATTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTA
* * * *
10450391 TGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGAT
131 TGAATATTGTAATTATTTTATAATGAATATTGTAATTATA-TTTTGAAT
* * * *
10450440 TAGTATTTTGTATGAATAGTGTAATTTTTTGTATGAATATTGTACTTTTTTATGAATATTATAAT
1 TA--ATTTTGTATGAATAGTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTATAAT
*
10450505 TATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTG
64 TATTTTATAATTAATTTTGTAATTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTG
* * *
10450570 TATGAATATTGTAATTTTGTAATTTTGCATGAATATTGTAATTAT-TTTAT-AAT
129 TATGAATATTGTAATTAT-T--TTAT-AATGAATATTGTAATTATATTT-TGAAT
10450623 TAATTTTGTAT
1 TAATTTTGTAT
10450634 TTATAGTTTT
Statistics
Matches: 172, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
179 2 0.01
181 144 0.84
182 1 0.01
183 7 0.04
184 4 0.02
185 14 0.08
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.56
Consensus pattern (178 bp):
TAATTTTGTATGAATAGTGTAACTTTTTGTATGAATATTATAATTTTGTATGAATATTATAATTA
TTTTATAATTAATTTTGTAATTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTTTGTA
TGAATATTGTAATTATTTTATAATGAATATTGTAATTATATTTTGAAT
Found at i:10451044 original size:8 final size:8
Alignment explanation
Indices: 10451031--10451056 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
10451021 ATGAATATTT
10451031 TAATTTTG
1 TAATTTTG
10451039 TAATTTTG
1 TAATTTTG
10451047 TAATTTTG
1 TAATTTTG
10451055 TA
1 TA
10451057 TGAATATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (8 bp):
TAATTTTG
Found at i:10451081 original size:23 final size:23
Alignment explanation
Indices: 10451051--10451199 Score: 206
Period size: 23 Copynumber: 6.8 Consensus size: 23
10451041 ATTTTGTAAT
10451051 TTTGTATGAATATTGTAATATTG
1 TTTGTATGAATATTGTAATATTG
10451074 TTTGTATGAATATTGT-A-A-T-
1 TTTGTATGAATATTGTAATATTG
* *
10451093 TTTGTATGGATATTGTGATATTG
1 TTTGTATGAATATTGTAATATTG
10451116 TTTGTATGAATATTGTAATATTG
1 TTTGTATGAATATTGTAATATTG
10451139 TTTGTATGAATATTGT-A-A-T-
1 TTTGTATGAATATTGTAATATTG
* *
10451158 TTTGTATGGATATTGTGATATTG
1 TTTGTATGAATATTGTAATATTG
10451181 TTTGTATGAATATTGTAAT
1 TTTGTATGAATATTGTAAT
10451200 TATTTTATAA
Statistics
Matches: 112, Mismatches: 6, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
19 30 0.27
20 4 0.04
21 4 0.04
22 4 0.04
23 70 0.62
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.52
Consensus pattern (23 bp):
TTTGTATGAATATTGTAATATTG
Found at i:10451091 original size:42 final size:46
Alignment explanation
Indices: 10451051--10451199 Score: 206
Period size: 42 Copynumber: 3.4 Consensus size: 46
10451041 ATTTTGTAAT
10451051 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGT-A-A-T-
1 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATATTG
* *
10451093 TTTGTATGGATATTGTGATATTGTTTGTATGAATATTGTAATATTG
1 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATATTG
* *
10451139 TTTGTATGAATATTGT-A-A-T-TTTGTATGGATATTGTGATATTG
1 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATATTG
10451181 TTTGTATGAATATTGTAAT
1 TTTGTATGAATATTGTAAT
10451200 TATTTTATAA
Statistics
Matches: 96, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
42 74 0.77
43 3 0.03
44 2 0.02
45 2 0.02
46 15 0.16
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.52
Consensus pattern (46 bp):
TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATATTG
Found at i:10451127 original size:65 final size:65
Alignment explanation
Indices: 10451051--10451199 Score: 298
Period size: 65 Copynumber: 2.3 Consensus size: 65
10451041 ATTTTGTAAT
10451051 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATTTTGTATGGATATTGTGATATTG
1 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATTTTGTATGGATATTGTGATATTG
10451116 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATTTTGTATGGATATTGTGATATTG
1 TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATTTTGTATGGATATTGTGATATTG
10451181 TTTGTATGAATATTGTAAT
1 TTTGTATGAATATTGTAAT
10451200 TATTTTATAA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 84 1.00
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.52
Consensus pattern (65 bp):
TTTGTATGAATATTGTAATATTGTTTGTATGAATATTGTAATTTTGTATGGATATTGTGATATTG
Found at i:10451264 original size:60 final size:60
Alignment explanation
Indices: 10451193--10451314 Score: 185
Period size: 60 Copynumber: 2.0 Consensus size: 60
10451183 TGTATGAATA
* * *
10451193 TTGTAATTATTTTATAA-TTAATTTGTTAGTAATTTAGGATTATGTTATAAATT-TTTGTGT
1 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTT-TGT
10451253 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTTTGT
1 TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTTTGT
10451313 TT
1 TT
10451315 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
59 6 0.11
60 48 0.84
61 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (60 bp):
TTGTAATTATTTAAAATTTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTTTGT
Found at i:10451467 original size:15 final size:16
Alignment explanation
Indices: 10451431--10451467 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
10451421 CTCATTTAAT
10451431 TTTTATATAATGTAAC
1 TTTTATATAATGTAAC
*
10451447 TTTTATATTATGTAA-
1 TTTTATATAATGTAAC
10451462 TTTTAT
1 TTTTAT
10451468 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTATATAATGTAAC
Found at i:10459716 original size:21 final size:22
Alignment explanation
Indices: 10459690--10459737 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
10459680 GGATTTTTTA
10459690 AAAAAATAAAAGAAC-A-GATTC
1 AAAAAA-AAAAGAACAAGGATTC
*
10459711 AAAAAAAGAAGAACAAGGATTC
1 AAAAAAAAAAGAACAAGGATTC
10459733 AAAAA
1 AAAAA
10459738 TTAATAGTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.69, C:0.08, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAAAAAAAGAACAAGGATTC
Found at i:10460699 original size:3 final size:3
Alignment explanation
Indices: 10460693--10460722 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
10460683 ATTTTTTTAG
*
10460693 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10460723 TTGTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:10460744 original size:26 final size:25
Alignment explanation
Indices: 10460710--10460758 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
10460700 TTATTACTAT
*
10460710 TATTATTATTATTTTGTTTTATTTAA
1 TATTATTATTATTTT-ATTTATTTAA
* *
10460736 TATTTTTATTCTTTTATTTATTT
1 TATTATTATTATTTTATTTATTT
10460759 GCTTATTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (25 bp):
TATTATTATTATTTTATTTATTTAA
Found at i:10465116 original size:17 final size:17
Alignment explanation
Indices: 10465094--10465126 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10465084 GCTGCATACT
*
10465094 ACTCTCTGGACTTTTGG
1 ACTCTCCGGACTTTTGG
10465111 ACTCTCCGGACTTTTG
1 ACTCTCCGGACTTTTG
10465127 AACTGTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.39
Consensus pattern (17 bp):
ACTCTCCGGACTTTTGG
Found at i:10471706 original size:3 final size:3
Alignment explanation
Indices: 10471698--10471727 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10471688 ACAATTCCAA
10471698 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10471728 TTTATTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10472718 original size:59 final size:59
Alignment explanation
Indices: 10472629--10472760 Score: 149
Period size: 59 Copynumber: 2.2 Consensus size: 59
10472619 TGGGTTTTGA
* * * *
10472629 AATTTTTTTTTGTCCAATTTAACACCTAAACTTGATAATTATTCTGACATTAGAGCTTG
1 AATTTTTTTTTGTCCAAGTTAACACCTAAACTTGACAATTATTCTCACATTAGAACTTG
* * * * *
10472688 AATTTTTTTTTGTCCAAGTTAGC-CTTTAAACTTTACAATTATTCTCATATTGGAACTTG
1 AATTTTTTTTTGTCCAAGTTAACAC-CTAAACTTGACAATTATTCTCACATTAGAACTTG
**
10472747 AAGCTTTTTTTGTC
1 AATTTTTTTTTGTC
10472761 TTAATCCTTG
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
58 1 0.02
59 60 0.98
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (59 bp):
AATTTTTTTTTGTCCAAGTTAACACCTAAACTTGACAATTATTCTCACATTAGAACTTG
Found at i:10475733 original size:14 final size:14
Alignment explanation
Indices: 10475714--10475753 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
10475704 TTGATTGTCA
10475714 GTAAAATATTTTCC
1 GTAAAATATTTTCC
* *
10475728 GTAAAATAATTTCT
1 GTAAAATATTTTCC
*
10475742 GGAAAATATTTT
1 GTAAAATATTTT
10475754 ACTTTTATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (14 bp):
GTAAAATATTTTCC
Found at i:10476735 original size:529 final size:531
Alignment explanation
Indices: 10475730--10476793 Score: 2105
Period size: 529 Copynumber: 2.0 Consensus size: 531
10475720 TATTTTCCGT
10475730 AAAATAATTTCTGGAAAATATTTTACTTTTATGTAAAATGATTTACTGGAAAATATTTTCTGGTG
1 AAAATAATTTCTGGAAAATATTTTACTTTTATGTAAAATGATTTACTGGAAAATATTTTCTGGTG
10475795 TTTGATTAAATCTGTGTAAAATATTTTCTGCTGCTTGGCAGATTTTTTGAAAATATTTTTCGGAA
66 TTTGATTAAATCTGTGTAAAATATTTTCTGCTGCTTGGCAGATTTTTTGAAAATATTTTTCGGAA
10475860 AAGTTGTTTTTACATATATTAATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATAT
131 AAGTTGTTTTTACATATATTAATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATAT
10475925 ATTGCAATGATTTATTTATAATAATACTCAATTATTAAGCTACAATATTAATCGTTATAAATTGA
196 ATTGCAATGATTTATTTATAATAATACTCAATTATTAAGCTACAATATTAATCGTTATAAATTGA
10475990 AAAAAACTAATATCAAATAAATTATTTGTAATTGTGTTAAAAAAACAAGTATTGAATAATTAAAA
261 AAAAAACTAATATCAAATAAATTATTTGTAATTGTGTTAAAAAAACAAGTATTGAATAATTAAAA
10476055 AAACAAGTTACTGGAAAATCGATAAACAGAAGCAGTTTTCTACCGGAAATGAAGGAAGGAATGAA
326 AAACAAGTTACTGGAAAATCGATAAACAGAAGCAGTTTTCTACCGGAAATGAAGGAAGGAATGAA
10476120 GGAGGCGATAAAGAGGAGAGCACGGAAAATGTCTTACGGAAATTGAAAGGGTAAGACATTTTCCC
391 GGAGGCGATAAAGAGGAGAGCACGGAAAATGTCTTACGGAAATTGAAAGGGTAAGACATTTTCCC
10476185 TAAAATGTAACCCATTTTCCCTTGTTTTGGAGTTCATTTTCCAAATGGAAAATGTTTTCCTCCAA
456 TAAAATGTAACCCATTTTCCCTTGTTTTGGAGTTCATTTTCCAAATGGAAAATGTTTTCCTCCAA
10476250 TCAAACACTCG
521 TCAAACACTCG
10476261 AAAAT-ATTTCTGGAAAATATTTTACTTTTATGTAAAATGATTTACTGGAAAATATTTTCTGGTG
1 AAAATAATTTCTGGAAAATATTTTACTTTTATGTAAAATGATTTACTGGAAAATATTTTCTGGTG
10476325 TTTGATTAAATCTGTGTAAAATATTTTCTGCTGCTTGGCAGATTTTTTGAAAATATTTTTCGGAA
66 TTTGATTAAATCTGTGTAAAATATTTTCTGCTGCTTGGCAGATTTTTTGAAAATATTTTTCGGAA
10476390 AAGTTGTTTTTACATATATTAATATATATTAATAAATTTTTATATTTTAAATTA-TTTTACATAT
131 AAGTTGTTTTTACATATATTAATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATAT
10476454 ATTGCAATGATTTATTTATAATAATACTCAATTATTAAGCTACAATATTAATCGTTATAAATTGA
196 ATTGCAATGATTTATTTATAATAATACTCAATTATTAAGCTACAATATTAATCGTTATAAATTGA
10476519 AAAAAACTAATATCAAATAAATTATTTGTAATTGTGTTAAAAAAACAAGTATTGAATAATTAAAA
261 AAAAAACTAATATCAAATAAATTATTTGTAATTGTGTTAAAAAAACAAGTATTGAATAATTAAAA
*
10476584 AAACATGTTACTGGAAAATCGATAAACAGAAGCAGTTTTCTACCGGAAATGAAGGAAGGAATGAA
326 AAACAAGTTACTGGAAAATCGATAAACAGAAGCAGTTTTCTACCGGAAATGAAGGAAGGAATGAA
10476649 GGAGGCGATAAAGAGGAGAGCACGGAAAATGTCTTACGGAAATTGAAAGGGTAAGACATTTTCCC
391 GGAGGCGATAAAGAGGAGAGCACGGAAAATGTCTTACGGAAATTGAAAGGGTAAGACATTTTCCC
10476714 TAAAATGTAACCCATTTTCCCTTGTTTTGGAGTTCATTTTCCAAATGGAAAATGTTTTCCTCCAA
456 TAAAATGTAACCCATTTTCCCTTGTTTTGGAGTTCATTTTCCAAATGGAAAATGTTTTCCTCCAA
10476779 TCAAACACTCG
521 TCAAACACTCG
10476790 AAAA
1 AAAA
10476794 GTTGGAAATG
Statistics
Matches: 532, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
529 349 0.66
530 178 0.33
531 5 0.01
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36
Consensus pattern (531 bp):
AAAATAATTTCTGGAAAATATTTTACTTTTATGTAAAATGATTTACTGGAAAATATTTTCTGGTG
TTTGATTAAATCTGTGTAAAATATTTTCTGCTGCTTGGCAGATTTTTTGAAAATATTTTTCGGAA
AAGTTGTTTTTACATATATTAATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATAT
ATTGCAATGATTTATTTATAATAATACTCAATTATTAAGCTACAATATTAATCGTTATAAATTGA
AAAAAACTAATATCAAATAAATTATTTGTAATTGTGTTAAAAAAACAAGTATTGAATAATTAAAA
AAACAAGTTACTGGAAAATCGATAAACAGAAGCAGTTTTCTACCGGAAATGAAGGAAGGAATGAA
GGAGGCGATAAAGAGGAGAGCACGGAAAATGTCTTACGGAAATTGAAAGGGTAAGACATTTTCCC
TAAAATGTAACCCATTTTCCCTTGTTTTGGAGTTCATTTTCCAAATGGAAAATGTTTTCCTCCAA
TCAAACACTCG
Found at i:10477347 original size:31 final size:31
Alignment explanation
Indices: 10477304--10477371 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
10477294 AGTAGCATCC
* *
10477304 TAGTAACTTAAAT-AAAACTTTTTAAATAGTT
1 TAGTGACTTAAATAAAAAC-TTTTAAATAATT
10477335 TAGTGACTTAAATAAAAACTTTTAAATAATT
1 TAGTGACTTAAATAAAAACTTTTAAATAATT
*
10477366 CAGTGA
1 TAGTGA
10477372 TCATTTTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 28 0.85
32 5 0.15
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (31 bp):
TAGTGACTTAAATAAAAACTTTTAAATAATT
Found at i:10481523 original size:51 final size:53
Alignment explanation
Indices: 10481468--10481576 Score: 150
Period size: 53 Copynumber: 2.1 Consensus size: 53
10481458 TTTCTCCTCC
*
10481468 CATTTCTT-TACCTATT-CTCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGT
1 CATTTCTTGTACCTATTGATCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGT
* *** *
10481519 CATTTGTTGTGGTTTTTGATCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGT
1 CATTTCTTGTACCTATTGATCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGT
10481572 CATTT
1 CATTT
10481577 TGTTGTGGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 7 0.14
52 4 0.08
53 39 0.78
ACGTcount: A:0.07, C:0.25, G:0.10, T:0.58
Consensus pattern (53 bp):
CATTTCTTGTACCTATTGATCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGT
Found at i:10481548 original size:53 final size:54
Alignment explanation
Indices: 10481485--10481591 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 54
10481475 TTACCTATTC
10481485 TCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGTCA-TTTGTTGTGGTTTTTGA
1 TCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGTCATTTTGTTGTGGTTTTTGA
10481538 TCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGTCATTTTGTTGTGGTTTTTGA
1 TCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGTCATTTTGTTGTGGTTTTTGA
10481592 AATTCACTGC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 36 0.68
54 17 0.32
ACGTcount: A:0.06, C:0.21, G:0.15, T:0.59
Consensus pattern (54 bp):
TCTCTCTCGGTCTCTTTTTTCATTTTTTCCCTGTCATTTTGTTGTGGTTTTTGA
Found at i:10484186 original size:77 final size:77
Alignment explanation
Indices: 10484067--10484218 Score: 295
Period size: 77 Copynumber: 2.0 Consensus size: 77
10484057 TCTTAAAGTT
10484067 TTATGTCAATAAAATTTTATACATTTCAAGTTCAAAGATTAAAATATATCTAATTGTCAAGTTCA
1 TTATGTCAATAAAATTTTATACATTTCAAGTTCAAAGATTAAAATATATCTAATTGTCAAGTTCA
10484132 ATTATTAAAGAG
66 ATTATTAAAGAG
*
10484144 TTATGTCAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGTCAAGTTCA
1 TTATGTCAATAAAATTTTATACATTTCAAGTTCAAAGATTAAAATATATCTAATTGTCAAGTTCA
10484209 ATTATTAAAG
66 ATTATTAAAG
10484219 TGGACAAAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (77 bp):
TTATGTCAATAAAATTTTATACATTTCAAGTTCAAAGATTAAAATATATCTAATTGTCAAGTTCA
ATTATTAAAGAG
Found at i:10484273 original size:11 final size:11
Alignment explanation
Indices: 10484257--10484283 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10484247 AAACTTAATT
10484257 GTCAAGTTCAG
1 GTCAAGTTCAG
10484268 GTCAAGTTCAG
1 GTCAAGTTCAG
10484279 GTCAA
1 GTCAA
10484284 TAATGAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (11 bp):
GTCAAGTTCAG
Found at i:10486032 original size:33 final size:31
Alignment explanation
Indices: 10485970--10486032 Score: 72
Period size: 33 Copynumber: 2.0 Consensus size: 31
10485960 TAAGTTAGTC
* * *
10485970 CTTAAATTTGATAATTGTTCTCATATTGGGG
1 CTTAAATTTGATAATTATTCCCACATTGGGG
*
10486001 CTTAAACTTTAGATAATTATTCCCACGTTGGG
1 CTTAAA-TTT-GATAATTATTCCCACATTGGG
10486033 CTTGGCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 6 0.23
32 3 0.12
33 17 0.65
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41
Consensus pattern (31 bp):
CTTAAATTTGATAATTATTCCCACATTGGGG
Found at i:10503803 original size:26 final size:26
Alignment explanation
Indices: 10503774--10503841 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
10503764 ATATACATAA
*
10503774 TATTTGGGGTAAAAGTATAATAAAAG
1 TATTTGGAGTAAAAGTATAATAAAAG
* *
10503800 TATTTGTATTAAAAGTATAATAAAAG
1 TATTTGGAGTAAAAGTATAATAAAAG
* * *
10503826 GATTTGTATTAAAAGT
1 TATTTGGAGTAAAAGT
10503842 CAGATTGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.37
Consensus pattern (26 bp):
TATTTGGAGTAAAAGTATAATAAAAG
Found at i:10503814 original size:15 final size:15
Alignment explanation
Indices: 10503794--10503841 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
10503784 AAAAGTATAA
10503794 TAAAAGTATTTGTAT
1 TAAAAGTATTTGTAT
*
10503809 TAAAAGTA----TAA
1 TAAAAGTATTTGTAT
*
10503820 TAAAAGGATTTGTAT
1 TAAAAGTATTTGTAT
10503835 TAAAAGT
1 TAAAAGT
10503842 CAGATTGTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
11 9 0.36
15 16 0.64
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.38
Consensus pattern (15 bp):
TAAAAGTATTTGTAT
Found at i:10504071 original size:23 final size:24
Alignment explanation
Indices: 10504027--10504071 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
10504017 TAACATACAA
*
10504027 GAATAAATTTTTAACGATAAAAAT
1 GAATAAATTTTTAACGAAAAAAAT
10504051 GAATAAATTTTTAAC-AAAAAA
1 GAATAAATTTTTAACGAAAAAA
10504072 GATTCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (24 bp):
GAATAAATTTTTAACGAAAAAAAT
Found at i:10507426 original size:7 final size:7
Alignment explanation
Indices: 10507414--10507439 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10507404 AGGCTAAAAG
10507414 TAAATTA
1 TAAATTA
10507421 TAAATTA
1 TAAATTA
10507428 TAAATTA
1 TAAATTA
10507435 TAAAT
1 TAAAT
10507440 ATAGTAGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAAATTA
Found at i:10510240 original size:105 final size:105
Alignment explanation
Indices: 10510066--10510263 Score: 378
Period size: 105 Copynumber: 1.9 Consensus size: 105
10510056 GCTTTAAGAG
10510066 GATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
1 GATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
10510131 TTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAAT
66 TTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAAT
* *
10510171 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACGTTAGGGCACGTTTTCTCGATT
1 GATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
10510236 TTCCAAACGCGAAATATTGCCTTATTTA
66 TTCCAAACGCGAAATATTGCCTTATTTA
10510264 GAAAAATTTT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 91 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (105 bp):
GATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
TTCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAAT
Found at i:10510783 original size:38 final size:38
Alignment explanation
Indices: 10510724--10510829 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
10510714 TATTTTTAAG
*
10510724 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
10510761 AATATGTATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
10510799 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
10510830 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:10511176 original size:22 final size:23
Alignment explanation
Indices: 10511120--10511176 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
10511110 AGTTTAAAAT
10511120 AAAATATATAAAAGAAAGTCTTA
1 AAAATATATAAAAGAAAGTCTTA
*
10511143 AATAATA-A-AAAAGACAGT-TTA
1 AA-AATATATAAAAGAAAGTCTTA
10511164 AAAATATATAAAA
1 AAAATATATAAAA
10511177 ATAGTGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 13 0.43
23 3 0.10
24 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAATATATAAAAGAAAGTCTTA
Found at i:10511899 original size:13 final size:13
Alignment explanation
Indices: 10511881--10511905 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10511871 AAATGCGTAG
10511881 ATAAATAAATGAA
1 ATAAATAAATGAA
10511894 ATAAATAAATGA
1 ATAAATAAATGA
10511906 TAGATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATAAATAAATGAA
Found at i:10512906 original size:132 final size:132
Alignment explanation
Indices: 10512665--10513405 Score: 1019
Period size: 132 Copynumber: 5.6 Consensus size: 132
10512655 CTGTTTTTCA
*
10512665 ATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* *
10512730 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
10512795 GG
131 CG
* * * *
10512797 ATCCACTTCTTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
10512862 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
10512927 CG
131 CG
* * * *
10512929 ATCCACTTCCTACCAATATAGGAAGATAGGATCTACTACCTTCGATCTACTTCACGCTAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
10512994 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
10513059 CG
131 CG
* * * * * * * *
10513061 ATCCACTTCATGCCAAT-TCATG-AGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
1 ATCCACTTCCTACCAATAT-AGGAAGACAGGATCTGCTATCTTCGATCTACTTC-ACGCCAATAC
** * *** *** *
10513124 GGGAAGACAAGATCTGC-ATCTTCGAT-TCACTTC-ATGCCAATACATG-AGACAAGATCTGCTT
64 ATGAAGACAAGATCTGCTTTCTTCGATCT-ACTTCGCCACCAATATGGGAAGACAAGATCTGC-A
10513185 TCTTCG
127 TCTTCG
* * * * *
10513191 ATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCACGCCAATACA
1 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACA
*
10513255 TGAAGACAAGATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
65 TGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCT
10513320 TCG
130 TCG
* * * *
10513323 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGCTATCCTCGATCTACTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
10513388 GAAGACAAGATCTGCTTT
66 GAAGACAAGATCTGCTTT
10513406 AATGACTTCA
Statistics
Matches: 527, Mismatches: 70, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
129 13 0.02
130 43 0.08
131 94 0.18
132 364 0.69
133 13 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CG
Found at i:10513107 original size:87 final size:88
Alignment explanation
Indices: 10512652--10513375 Score: 836
Period size: 88 Copynumber: 8.3 Consensus size: 88
10512642 AGGGAGATAG
* * * * * * *
10512652 GATCTG-TTT-TTCAATCCACTTC-CTACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
10512714 CTTCACGCCAATACATGAAGACAA
65 CTTCACGCCAATACATGAAGACAA
* * *
10512738 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
**** * * * *
10512803 TTCTTATCAATATAGGAAGATAG
66 TTCACGCCAATACATGAAGACAA
* * * * *** * * *
10512826 GACCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
* * ***
10512890 CTTCGCCACCAATATGGGAAGACAA
65 CTTC-ACGCCAATACATGAAGACAA
* * * * * * * * *
10512915 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTACTACCTTCGATCTA
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
*
10512978 CTTCACGCTAATACATGAAGACAA
65 CTTCACGCCAATACATGAAGACAA
10513002 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
10513067 TTCATGCCAATTCATG-AGACAA
66 TTCACGCCAATACATGAAGACAA
*
10513089 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATTCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
10513154 TTCATGCCAATACATG-AGACAA
66 TTCACGCCAATACATGAAGACAA
10513176 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
10513241 TTCACGCCAATACATGAAGACAA
66 TTCACGCCAATACATGAAGACAA
*
10513264 GATTTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * * *
10513329 TTC-CTACCAATATAGGAAGATAG
66 TTCAC-GCCAATACATGAAGACAA
* * *
10513352 GACCTGCTATCCTCGATCTACTTC
1 GATCTGCTTTCTTCGATCTACTTC
10513376 ATGCCAATAC
Statistics
Matches: 549, Mismatches: 80, Indels: 16
0.85 0.12 0.02
Matches are distributed among these distances:
86 6 0.01
87 216 0.39
88 263 0.48
89 64 0.12
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (88 bp):
GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCACGCCAATACATGAAGACAA
Found at i:10525462 original size:38 final size:38
Alignment explanation
Indices: 10525417--10525515 Score: 107
Period size: 38 Copynumber: 2.6 Consensus size: 38
10525407 TTAAGAATAT
*
10525417 AAAATATATATAAGTATGTATATG-ATGTA-AAATATGTA
1 AAAATATATATAAGTATGTATAAGAAT-TAGAAATATG-A
* *
10525455 TAAATATATGTAAGTA--TATAAGAATTATGAAATATGA
1 AAAATATATATAAGTATGTATAAGAATTA-GAAATATGA
*
10525492 AAAATATATTTAAGTATGTATAAG
1 AAAATATATATAAGTATGTATAAG
10525516 TACGTATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
36 7 0.14
37 17 0.33
38 21 0.41
39 6 0.12
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (38 bp):
AAAATATATATAAGTATGTATAAGAATTAGAAATATGA
Found at i:10525827 original size:21 final size:22
Alignment explanation
Indices: 10525800--10525857 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 22
10525790 TAGTTTAAAA
*
10525800 TAAAATATATAAAAGAA-AGTCT
1 TAAAATATATAAAAAAACAGT-T
10525822 T-AAATA-ATAAAAAAACAGTT
1 TAAAATATATAAAAAAACAGTT
10525842 TAAAAATATATAAAAA
1 T-AAAATATATAAAAA
10525858 TAGTGTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 10 0.32
21 8 0.26
22 6 0.19
23 7 0.23
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (22 bp):
TAAAATATATAAAAAAACAGTT
Found at i:10525866 original size:22 final size:21
Alignment explanation
Indices: 10525801--10525868 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 21
10525791 AGTTTAAAAT
10525801 AAAATATATAAAAGAAAGTCTTA
1 AAAATATATAAAA-AAAGT-TTA
*
10525824 AATAATA-A-AAAAACAGTTTA
1 AA-AATATATAAAAAAAGTTTA
*
10525844 AAAATATATAAAAATAGTGTTA
1 AAAATATATAAAAAAAGT-TTA
10525866 AAA
1 AAA
10525869 GGATCAAGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 4 0.10
20 6 0.15
21 12 0.31
22 10 0.26
23 3 0.08
24 4 0.10
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAATATATAAAAAAAGTTTA
Found at i:10526585 original size:13 final size:13
Alignment explanation
Indices: 10526567--10526591 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10526557 AAATGCGTAG
10526567 ATAAATAAATGAA
1 ATAAATAAATGAA
10526580 ATAAATAAATGA
1 ATAAATAAATGA
10526592 TAGATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATAAATAAATGAA
Found at i:10529550 original size:15 final size:16
Alignment explanation
Indices: 10529525--10529554 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10529515 ATTTGATTAA
10529525 AAAATATACCAAAAAT
1 AAAATATACCAAAAAT
10529541 AAAA-ATACCAAAAA
1 AAAATATACCAAAAA
10529555 ATTTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATATACCAAAAAT
Found at i:10534590 original size:32 final size:32
Alignment explanation
Indices: 10534554--10534617 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
10534544 ATTGGCCATA
10534554 TAATCATAAACAAGAATCTTTTCATTGTTATC
1 TAATCATAAACAAGAATCTTTTCATTGTTATC
10534586 TAATCATAAACAAGAATCTTTTCATTGTTATC
1 TAATCATAAACAAGAATCTTTTCATTGTTATC
10534618 GTTGCAGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.41
Consensus pattern (32 bp):
TAATCATAAACAAGAATCTTTTCATTGTTATC
Found at i:10535984 original size:14 final size:14
Alignment explanation
Indices: 10535965--10535999 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
10535955 TCAAACAGGA
10535965 AATTAGAATCCAGT
1 AATTAGAATCCAGT
10535979 AATTAGAATCCAGT
1 AATTAGAATCCAGT
10535993 AAGTTAG
1 AA-TTAG
10536000 GGTTCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (14 bp):
AATTAGAATCCAGT
Found at i:10545846 original size:3 final size:3
Alignment explanation
Indices: 10545838--10545866 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10545828 ATCACATGTT
10545838 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10545867 TGGATGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10545986 original size:73 final size:73
Alignment explanation
Indices: 10545867--10546052 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
10545857 TATTATTATT
*
10545867 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10545932 ATTTTAAG
66 ATTTTAAG
10545940 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10546005 ATTTTAAG
66 ATTTTAAG
10546013 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
10546053 GTCAAGTTGT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:10550276 original size:3 final size:3
Alignment explanation
Indices: 10550268--10550293 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10550258 ATCACATGTT
10550268 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
10550294 TGGATGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10550413 original size:73 final size:73
Alignment explanation
Indices: 10550294--10550479 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
10550284 TATTATTATT
*
10550294 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10550359 ATTTTAAG
66 ATTTTAAG
10550367 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10550432 ATTTTAAG
66 ATTTTAAG
10550440 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
10550480 GTCAAGTTGT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:10555032 original size:19 final size:17
Alignment explanation
Indices: 10555007--10555054 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 17
10554997 AATTAAGTCC
10555007 TTTATTTATTTACTTATT
1 TTTATTTATTTACTT-TT
**
10555025 TATTATTTCCTTACTTTT
1 T-TTATTTATTTACTTTT
*
10555043 TTTATATATTTA
1 TTTATTTATTTA
10555055 AAATCGTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 8 0.33
18 4 0.17
19 12 0.50
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTTATTTACTTTT
Found at i:10555138 original size:3 final size:3
Alignment explanation
Indices: 10555130--10555188 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
10555120 TTGTGCCCTT
* * *
10555130 TTA TTA TTA TTA GTA TTG TTA TTTA TTA TTA TT- TTA TTA TCA TCTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA T-TA
*
10555176 -TA CTA TTA TTA TT
1 TTA TTA TTA TTA TT
10555189 TTTTTTTACA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
2 4 0.09
3 37 0.82
4 4 0.09
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:10555897 original size:123 final size:123
Alignment explanation
Indices: 10555669--10556016 Score: 635
Period size: 123 Copynumber: 2.8 Consensus size: 123
10555659 TTATTTTGAG
10555669 TTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
*
10555733 GAAATCGCGCCCTCGTGGACGCGATTTTGCTATAGTAGGTCATGTAAGAAATAATTTTT
65 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
10555792 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* * *
10555857 AAATCGTGCCCTCTTGGACGCGATTTTGCTACAGTTGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
*
10555915 TTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
10555980 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
10556017 CAAGTTTGGG
Statistics
Matches: 216, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
123 215 1.00
124 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
Found at i:10559147 original size:10 final size:10
Alignment explanation
Indices: 10559132--10559156 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10559122 CAAATCTAAC
10559132 ATTATGTAAA
1 ATTATGTAAA
10559142 ATTATGTAAA
1 ATTATGTAAA
10559152 ATTAT
1 ATTAT
10559157 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:10559246 original size:55 final size:55
Alignment explanation
Indices: 10559140--10559267 Score: 222
Period size: 55 Copynumber: 2.3 Consensus size: 55
10559130 ACATTATGTA
*
10559140 AAATTATGTAAAATTATTAAGCCAAAAAAATTTTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAGCC-AAAAAATTGTGTTAATGGTTAGTAAAATTATC
10559196 AAATTATGTAAAATTATTAAGTCC-AAAAATTGTGTTAATGGTTAGTAAAATTATC
1 AAATTATGTAAAATTATTAAG-CCAAAAAATTGTGTTAATGGTTAGTAAAATTATC
10559251 AAATTATGTAAAATTAT
1 AAATTATGTAAAATTAT
10559268 GTTAGAGTTA
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
55 47 0.67
56 21 0.30
57 2 0.03
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (55 bp):
AAATTATGTAAAATTATTAAGCCAAAAAATTGTGTTAATGGTTAGTAAAATTATC
Found at i:10559294 original size:29 final size:29
Alignment explanation
Indices: 10559261--10559442 Score: 301
Period size: 29 Copynumber: 6.3 Consensus size: 29
10559251 AAATTATGTA
* * *
10559261 AAATTATGTTAGAGTTAGGATTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
10559290 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
10559319 AAATTAAGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
*
10559348 AAATTAGGTTAGGGTTAAGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
10559377 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
10559406 AAATTAAGTTAAGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
10559435 AAATTAGG
1 AAATTAGG
10559443 ATTTTTATTA
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 143 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:10559553 original size:25 final size:25
Alignment explanation
Indices: 10559519--10559629 Score: 83
Period size: 25 Copynumber: 4.6 Consensus size: 25
10559509 TTTCTATGCC
*
10559519 TATTATATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
*
10559544 TATTACATCAAAT-AA-TATC-A--A
1 TATTACATCAAATAAACT-TCTATTT
* * * **
10559565 AATAAC-TCGAAA-AAAATTCTATGCG
1 TATTACATC-AAATAAACTTCTAT-TT
10559590 TATTACATCAAATAAACTTCTATTT
1 TATTACATCAAATAAACTTCTATTT
10559615 TATTACATCAAATAA
1 TATTACATCAAATAA
10559630 TAAATTTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
20 2 0.03
21 11 0.17
22 2 0.03
23 2 0.03
24 4 0.06
25 34 0.52
26 11 0.17
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (25 bp):
TATTACATCAAATAAACTTCTATTT
Found at i:10559562 original size:70 final size:71
Alignment explanation
Indices: 10559448--10559631 Score: 298
Period size: 71 Copynumber: 2.6 Consensus size: 71
10559438 TTAGGATTTT
* * **
10559448 TATTACATCAAATAGAACTTCTATTGTATTATATCAAATAATATCAAAATAACTCG-AAAACTTT
1 TATTACATCAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATT
10559512 CTATGCC
65 CTATGCC
*
10559519 TATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
*
10559584 TATGCG
66 TATGCC
10559590 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
10559632 AATTTAAATA
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
70 39 0.37
71 66 0.63
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
TATGCC
Found at i:10561856 original size:29 final size:30
Alignment explanation
Indices: 10561816--10561879 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 30
10561806 GCCATTGATG
10561816 AAAATATAAAAAA-ATTAAAATTA-TTTTAA
1 AAAATATAAAAAATA-TAAAATTATTTTTAA
10561845 AAAATATAAAAAATATAAAATTATTTTTAA
1 AAAATATAAAAAATATAAAATTATTTTTAA
10561875 AAAAT
1 AAAAT
10561880 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAATATAAAAAATATAAAATTATTTTTAA
Found at i:10561935 original size:29 final size:29
Alignment explanation
Indices: 10561903--10561986 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
10561893 AATTGAAATT
10561903 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
10561932 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
*
10561954 AAATATGGGTTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
10561983 AAAT
1 AAAT
10561987 TGAGAGGATT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
22 9 0.23
23 4 0.10
24 4 0.10
27 5 0.13
28 4 0.10
29 13 0.33
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:10561939 original size:51 final size:51
Alignment explanation
Indices: 10561880--10561994 Score: 212
Period size: 51 Copynumber: 2.3 Consensus size: 51
10561870 TTTAAAAAAT
*
10561880 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
*
10561931 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
10561982 GAAATTGAGAGGA
1 GAAATTGAGAGGA
10561995 TTAGAGAGGA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
Found at i:10562384 original size:17 final size:17
Alignment explanation
Indices: 10562364--10562397 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10562354 TATTATTACA
10562364 ATGATAAGATTATTATT
1 ATGATAAGATTATTATT
* *
10562381 ATGATTATATTATTATT
1 ATGATAAGATTATTATT
10562398 GTAGTATTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (17 bp):
ATGATAAGATTATTATT
Found at i:10567259 original size:44 final size:44
Alignment explanation
Indices: 10567167--10567292 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 44
10567157 AATTATGGCG
* * * * *
10567167 AATCTTATCTTTCTGAAGTTGCAGTGAAGCAGATTGAAGCCACC
1 AATCCTATCTCTCTGAAGTTGCAGTGAAGCAGATTAAAACCACA
* * * *
10567211 AATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAACGACA
1 AATCCTATCTCTCTGAAGTTGCAGTGAAGCAGATTAAAACCACA
* *
10567255 AATCCTATAC-CTTTGAAGTTGCAGT-AGGTCAGATTAAA
1 AATCCTAT-CTCTCTGAAGTTGCAGTGAAG-CAGATTAAA
10567293 TCTACCATAA
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
43 1 0.02
44 64 0.97
45 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCCTATCTCTCTGAAGTTGCAGTGAAGCAGATTAAAACCACA
Found at i:10568908 original size:21 final size:22
Alignment explanation
Indices: 10568882--10568926 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10568872 ATTATTCATT
*
10568882 TTTTGTT-TTTATTTTATTT-TA
1 TTTTGTTGTTT-TATTATTTCTA
10568903 TTTTGTTGTTTTATTATTTCTA
1 TTTTGTTGTTTTATTATTTCTA
10568925 TT
1 TT
10568927 GATTATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (22 bp):
TTTTGTTGTTTTATTATTTCTA
Found at i:10571514 original size:21 final size:21
Alignment explanation
Indices: 10571489--10571537 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
10571479 CTTGTAATAG
*
10571489 GGAAAAACTTGAAATTTTATA
1 GGAAAAACATGAAATTTTATA
* *
10571510 GGAAATTACATGAATTTTTATA
1 GGAAA-AACATGAAATTTTATA
10571532 -GAAAAA
1 GGAAAAA
10571538 GTTTGGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 9 0.39
22 13 0.57
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (21 bp):
GGAAAAACATGAAATTTTATA
Found at i:10576210 original size:13 final size:14
Alignment explanation
Indices: 10576187--10576222 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
10576177 GAAGAACAGT
*
10576187 AACATCAAAAACCA
1 AACATCAAAAACAA
10576201 AACA-CAAAAACAA
1 AACATCAAAAACAA
10576214 AACATCAAA
1 AACATCAAA
10576223 CCTTCCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (14 bp):
AACATCAAAAACAA
Found at i:10580725 original size:12 final size:12
Alignment explanation
Indices: 10580708--10580733 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10580698 CACTTTCTTT
10580708 TACATATATATA
1 TACATATATATA
10580720 TACATATATATA
1 TACATATATATA
10580732 TA
1 TA
10580734 TACATTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TACATATATATA
Found at i:10580730 original size:14 final size:14
Alignment explanation
Indices: 10580711--10580738 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10580701 TTTCTTTTAC
10580711 ATATATATATACAT
1 ATATATATATACAT
10580725 ATATATATATACAT
1 ATATATATATACAT
10580739 TTTAGGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATATATATACAT
Found at i:10598820 original size:20 final size:20
Alignment explanation
Indices: 10598784--10598821 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10598774 TAGAGACCAG
*
10598784 ATTAAATTAGTTCATTTACT
1 ATTAAATTAGATCATTTACT
10598804 ATTAAA-TAGATCAATTTA
1 ATTAAATTAGATC-ATTTA
10598822 GATCGCGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGATCATTTACT
Found at i:10604237 original size:22 final size:22
Alignment explanation
Indices: 10604209--10604261 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
10604199 TAATACCAAA
10604209 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
10604231 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
10604253 TCCCATACC
1 CCCCATACC
10604262 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:10604569 original size:26 final size:25
Alignment explanation
Indices: 10604535--10604588 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
10604525 CTTGGTTCTT
*
10604535 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
10604561 TTTTGTATTTTCTTTTATTTTTTTC
1 TTTTGTATTTTCTTTTATTTTTTTC
10604586 TTT
1 TTT
10604589 CTCTTCGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:10604576 original size:20 final size:19
Alignment explanation
Indices: 10604534--10604576 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
10604524 TCTTGGTTCT
*
10604534 TTTTTTTATTTTTATTTAG
1 TTTTTTTATTTTTATTTAC
* *
10604553 TTTTTTTCTTTTGTATTTTC
1 TTTTTTTATTTT-TATTTAC
10604573 TTTT
1 TTTT
10604577 ATTTTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.09, C:0.05, G:0.05, T:0.81
Consensus pattern (19 bp):
TTTTTTTATTTTTATTTAC
Found at i:10604583 original size:12 final size:13
Alignment explanation
Indices: 10604530--10604588 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
10604520 GTGTTCTTGG
10604530 TTCTTTT-TTTTAT
1 TTCTTTTATTTT-T
*
10604543 TTTTATTTAGTTTTT
1 TTCT-TTTA-TTTTT
* *
10604558 TTCTTTT-GTATT
1 TTCTTTTATTTTT
10604570 TTCTTTTATTTTT
1 TTCTTTTATTTTT
10604583 TTCTTT
1 TTCTTT
10604589 CTCTTCGCGA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
12 10 0.28
13 12 0.33
14 6 0.17
15 4 0.11
16 4 0.11
ACGTcount: A:0.08, C:0.07, G:0.03, T:0.81
Consensus pattern (13 bp):
TTCTTTTATTTTT
Found at i:10604584 original size:20 final size:19
Alignment explanation
Indices: 10604530--10604584 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
10604520 GTGTTCTTGG
*
10604530 TTCTTTTTTTTATTTTTATT
1 TTCTTTTTTTT-TTTGTATT
**
10604550 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTT-TTTTGTATT
10604570 TTCTTTTATTTTTTT
1 TTCTTTT-TTTTTTT
10604585 CTTTCTCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 24 0.86
21 4 0.14
ACGTcount: A:0.09, C:0.05, G:0.04, T:0.82
Consensus pattern (19 bp):
TTCTTTTTTTTTTTGTATT
Found at i:10605521 original size:3 final size:3
Alignment explanation
Indices: 10605499--10605580 Score: 101
Period size: 3 Copynumber: 26.3 Consensus size: 3
10605489 TTTTTATTTA
* * * *
10605499 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
10605547 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10605581 CTCTTGTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
3 64 0.94
4 1 0.01
5 1 0.01
6 2 0.03
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:10605599 original size:19 final size:17
Alignment explanation
Indices: 10605536--10605611 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 17
10605526 TATTATCTCC
* *
10605536 ATTACTATTATTATTATT
1 ATTACTATTCTTGTTA-T
* * *
10605554 ATTATTATTATTATTATT
1 ATTACTATTCTTGTTA-T
*
10605572 ATTATTATTCTCTTGTTAT
1 ATTACTA-T-TCTTGTTAT
10605591 ATTACTATTCTTGTTAT
1 ATTACTATTCTTGTTAT
10605608 ATTA
1 ATTA
10605612 TCACTATTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
17 13 0.25
18 25 0.48
19 8 0.15
20 6 0.12
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTACTATTCTTGTTAT
Found at i:10605619 original size:20 final size:19
Alignment explanation
Indices: 10605582--10605633 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
10605572 ATTATTATTC
10605582 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
10605599 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
10605619 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
10605634 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:10605948 original size:25 final size:24
Alignment explanation
Indices: 10605906--10605977 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
10605896 CATATACTAT
* *
10605906 TATTATTAATGTACTAT-TATTTTC
1 TATTATTAATATA-TATATTTTTTC
* *
10605930 TATTTATTACTAT-TATATTTATTAC
1 TA-TTATTAATATATATATTT-TTTC
10605955 TATTATTAATATATATATTTTTT
1 TATTATTAATATATATATTTTTT
10605978 TCTTTAGTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
23 3 0.08
24 15 0.39
25 20 0.53
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (24 bp):
TATTATTAATATATATATTTTTTC
Found at i:10605950 original size:15 final size:15
Alignment explanation
Indices: 10605930--10605960 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10605920 TATTATTTTC
10605930 TATTTATTACTATTA
1 TATTTATTACTATTA
10605945 TATTTATTACTATTA
1 TATTTATTACTATTA
10605960 T
1 T
10605961 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:10605967 original size:21 final size:21
Alignment explanation
Indices: 10605934--10605973 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10605924 ATTTTCTATT
* *
10605934 TATTACTATTATATTTATTAC
1 TATTACTAATATATATATTAC
*
10605955 TATTATTAATATATATATT
1 TATTACTAATATATATATT
10605974 TTTTTCTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTACTAATATATATATTAC
Found at i:10606064 original size:15 final size:15
Alignment explanation
Indices: 10606046--10606083 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
10606036 CCCACTTAGC
10606046 TATTATTACTATTAT
1 TATTATTACTATTAT
*
10606061 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
10606076 AATTATTA
1 TATTATTA
10606084 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:10616813 original size:24 final size:24
Alignment explanation
Indices: 10616779--10616830 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
10616769 TTTCCAGAAG
* **
10616779 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
10616803 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
10616827 ATTT
1 ATTT
10616831 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:10619389 original size:17 final size:18
Alignment explanation
Indices: 10619363--10619396 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10619353 ATGAACTACA
10619363 AATAACCAATA-AATACC
1 AATAACCAATACAATACC
*
10619380 AATAAGCAATACAATAC
1 AATAACCAATACAATAC
10619397 ACACAAGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.18
Consensus pattern (18 bp):
AATAACCAATACAATACC
Found at i:10619825 original size:26 final size:26
Alignment explanation
Indices: 10619770--10619851 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
10619760 TATGGAAATT
* *
10619770 AAAATATTAATATATAATAAATTTAA
1 AAAATATTAATACATAATAAACTTAA
* *
10619796 AAAATATTAATACATGAA-AAGCTTAG
1 AAAATATTAATACAT-AATAAACTTAA
10619822 AAAA-A-TAATACATACA-AAA-TTAA
1 AAAATATTAATACATA-ATAAACTTAA
10619845 AATAATA
1 AA-AATA
10619852 ATATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
23 6 0.13
24 13 0.28
25 2 0.04
26 23 0.50
27 2 0.04
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (26 bp):
AAAATATTAATACATAATAAACTTAA
Found at i:10623185 original size:12 final size:12
Alignment explanation
Indices: 10623168--10623201 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10623158 TTAGAGAAAT
10623168 TGCAAGAACAGA
1 TGCAAGAACAGA
**
10623180 TGCAAGCTCAGA
1 TGCAAGAACAGA
10623192 TGCAAGAACA
1 TGCAAGAACA
10623202 ACTAGAAAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.44, C:0.21, G:0.24, T:0.12
Consensus pattern (12 bp):
TGCAAGAACAGA
Found at i:10625494 original size:5 final size:5
Alignment explanation
Indices: 10625484--10625544 Score: 76
Period size: 5 Copynumber: 12.8 Consensus size: 5
10625474 AGAATGTTCA
10625484 AAAAG AAAAG --AAG AAAAG AAAAAG AAAAG AAAAG AAAAG AAAA- AAAAG
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
*
10625532 AAGA- AAAAG AAAA
1 AAAAG AAAAG AAAA
10625545 AGGAGAGGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
3 3 0.06
4 7 0.14
5 34 0.69
6 5 0.10
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10625507 original size:19 final size:19
Alignment explanation
Indices: 10625483--10625546 Score: 87
Period size: 19 Copynumber: 3.3 Consensus size: 19
10625473 AAGAATGTTC
10625483 AAAAAGAAAAGAAGAAAAG
1 AAAAAGAAAAGAAGAAAAG
10625502 AAAAAGAAAAGAAAAGAAAAG
1 AAAAAGAAAAG--AAGAAAAG
10625523 -AAAA-AAAAGAAGAAAAAG
1 AAAAAGAAAAGAAG-AAAAG
10625541 AAAAAG
1 AAAAAG
10625547 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
17 3 0.08
18 5 0.12
19 20 0.50
20 4 0.10
21 8 0.20
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAGAAGAAAAG
Found at i:10625513 original size:24 final size:27
Alignment explanation
Indices: 10625489--10625545 Score: 55
Period size: 29 Copynumber: 2.0 Consensus size: 27
10625479 GTTCAAAAAG
10625489 AAAAGAAG-AAAAGAAAAAGAAAAGAAAA
1 AAAAGAAGAAAAAG-AAAAG-AAAGAAAA
*
10625517 GAAAAGAAAAAAAAGAAGAA-AAAGAAAA
1 -AAAAGAAGAAAAAGAA-AAGAAAGAAAA
10625545 A
1 A
10625546 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
27 1 0.04
28 8 0.32
29 9 0.36
30 7 0.28
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (27 bp):
AAAAGAAGAAAAAGAAAAGAAAGAAAA
Found at i:10625546 original size:24 final size:23
Alignment explanation
Indices: 10625484--10625543 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
10625474 AGAATGTTCA
10625484 AAAAGAAAAG-AAGAAAAGAAAAAG
1 AAAAGAAAAGAAAG-AAA-AAAAAG
10625508 AAAAGAAAAGAAAAGAAAAAAAAG
1 AAAAGAAAAG-AAAGAAAAAAAAG
*
10625532 AAGA-AAAAGAAA
1 AAAAGAAAAGAAA
10625544 AAGGAGAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.09
23 5 0.15
24 19 0.58
25 3 0.09
26 3 0.09
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (23 bp):
AAAAGAAAAGAAAGAAAAAAAAG
Found at i:10626077 original size:105 final size:106
Alignment explanation
Indices: 10625808--10626129 Score: 402
Period size: 105 Copynumber: 3.0 Consensus size: 106
10625798 GGGCACCTGC
* *
10625808 TTTCATCTTATTCATTTCGTATCTTAGCAAAATTTGCTATCTTGATT-ATTTATTTATTTCGAGC
1 TTTCATCTTATTCATTTCGTATCTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCGAGC
* *
10625872 TTTGTTCTCAATAAAATTCCATCCTGTCCATTGTGACAATCCT
66 TTTG-TCTCAATAAAATTCCATCTTGTCCATTATGACAAT-CT
* * * *
10625915 TTTAATCTTATTCATTTTGGATCTTAGCAAAATTTACTATCCTGATTAATTTATTCATTTCGAGC
1 TTTCATCTTATTCATTTCGTATCTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCGAGC
* * *
10625980 TTTGCTCTCAATAAAATTTCATCTTATCCATTATGA-TAT-T
66 TTTG-TCTCAATAAAATTCCATCTTGTCCATTATGACAATCT
* * * * *
10626020 TTTCATCTTATTTAGTTCGTATCTGAGCAAAATTTTCTATCTTGATTAATTTATTCATTTTGAGT
1 TTTCATCTTATTCATTTCGTATCTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCGAG-
*
10626085 CTTAT-TCTCAATAAAATTCCATCTTGTCCATCT-TGATAATCT
65 CTT-TGTCTCAATAAAATTCCATCTTGTCCAT-TATGACAATCT
10626127 TTT
1 TTT
10626130 TCAAGCATTT
Statistics
Matches: 185, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
105 83 0.45
106 6 0.03
107 49 0.26
108 47 0.25
ACGTcount: A:0.26, C:0.17, G:0.08, T:0.48
Consensus pattern (106 bp):
TTTCATCTTATTCATTTCGTATCTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCGAGC
TTTGTCTCAATAAAATTCCATCTTGTCCATTATGACAATCT
Found at i:10626624 original size:24 final size:24
Alignment explanation
Indices: 10626597--10626654 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
10626587 ATGTCCCAAA
* *
10626597 ATTACCGTGGATTTAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
10626621 ATTACAGTGGATTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
*
10626645 ATTATAGTGG
1 ATTACAGTGG
10626655 GGGCAATCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTGAAG
Found at i:10627133 original size:89 final size:89
Alignment explanation
Indices: 10627007--10627265 Score: 243
Period size: 89 Copynumber: 2.9 Consensus size: 89
10626997 AAATTATAGA
* * * * * * *
10627007 GGAGTAGACTAGAAGCAACAAATTTTGTCTTCTTGTACTGGTAGTGAAGCAGATCAAAAACACAA
1 GGAGCAGACTAAAAACAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCAAAAACACAA
* * **
10627072 GTC-TGACCTCCCTGAGTTTGCAGT
66 GCCTTG-CCTCCCTGAGTTTACAAC
* * * *
10627096 GGAGCAGACTAAAAACAACAGATCTTGTCTTCCTGTACCGGCAGTAAAGCAGATCGAAAACACCA
1 GGAGCAGACTAAAAACAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCAAAAACACAA
*
10627161 GCCTTGTCTCCCTGAGTTTACAAC
66 GCCTTGCCTCCCTGAGTTTACAAC
* * * * * * ** *
10627185 AGAACAGACTAGAAGA-AGCAGATCTTGTCTTCCTGTACTGACAGTGAAGCAAATTGAAGACACA
1 GGAGCAGACTA-AAAACAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCAAAAACACA
**
10627249 AGCCTTATCTCCCTGAG
65 AGCCTTGCCTCCCTGAG
10627266 CAACATTGGA
Statistics
Matches: 140, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
89 135 0.96
90 5 0.04
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (89 bp):
GGAGCAGACTAAAAACAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCAAAAACACAA
GCCTTGCCTCCCTGAGTTTACAAC
Found at i:10627498 original size:88 final size:87
Alignment explanation
Indices: 10627406--10627615 Score: 208
Period size: 87 Copynumber: 2.4 Consensus size: 87
10627396 GTAGCAGTAA
* * * *
10627406 AGTAGGTCAAAAATTACAGATCTTGTCTTCCTGTA-CTGGCAGTGAAACAGATCGAA-GCTACAA
1 AGTAGGTCAAAAATTACAGATCTTATCTCCCT-AAGC-AGCAGTGAAACAGATCGAAGGC-ACAA
*
10627469 GCCTTATCTCCTTGAGCAGCAACGG
63 GCCCTATCTCCTTGAGCAGCAACGG
* * ** * * * *
10627494 AGTAGGTCGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGGCACCAGCC
1 AGTAGGTCAAAAATTACAGATCTTATCTCCCTAAGCAGCAGTGAAACAGATCGAAGGCACAAGCC
* *
10627559 CTATCTCCTTGAGTAGCAGCGG
66 CTATCTCCTTGAGCAGCAACGG
* * **
10627581 AGTAGGTCGAAGATTGTAGATCTTATCTCCCTAAG
1 AGTAGGTCAAAAATTACAGATCTTATCTCCCTAAG
10627616 TAGTAGTAGA
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
87 75 0.72
88 29 0.28
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (87 bp):
AGTAGGTCAAAAATTACAGATCTTATCTCCCTAAGCAGCAGTGAAACAGATCGAAGGCACAAGCC
CTATCTCCTTGAGCAGCAACGG
Found at i:10627520 original size:44 final size:44
Alignment explanation
Indices: 10627471--10627610 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
10627461 AGCTACAAGC
* *
10627471 CTTATCTCCTTGAGCAGCAACGGAGTAGGTCGAAGATTTTAGAT
1 CTTATCTCCTTGAGCAGCAGCGGAGTAGGTCGAAGATTCTAGAT
* * * * * * *** * *
10627515 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGGCACCAG-C
1 CTTATCTCCTTGAGCAGCAGCGGAGTAGGTCGAAGATTCTAGAT
* * *
10627558 CCTATCTCCTTGAGTAGCAGCGGAGTAGGTCGAAGATTGTAGAT
1 CTTATCTCCTTGAGCAGCAGCGGAGTAGGTCGAAGATTCTAGAT
10627602 CTTATCTCC
1 CTTATCTCC
10627611 CTAAGTAGTA
Statistics
Matches: 67, Mismatches: 28, Indels: 2
0.69 0.29 0.02
Matches are distributed among these distances:
43 29 0.43
44 38 0.57
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCCTTGAGCAGCAGCGGAGTAGGTCGAAGATTCTAGAT
Found at i:10627567 original size:87 final size:86
Alignment explanation
Indices: 10627453--10627642 Score: 281
Period size: 87 Copynumber: 2.2 Consensus size: 86
10627443 GGCAGTGAAA
* * *
10627453 CAGATCGAAGCTACAAGCCTTATCTCCTTGAGCAGCAACGGAGTAGGTCGAAGATTTTAGATCTT
1 CAGATCGAAGC-ACCAGCCCTATCTCCTTGAGCAGCAACGGAGTAGGTCGAAGATTGTAGATCTT
*
10627518 ATCTCCCTAAGCAGTAGTGGAG
65 ATCTCCCTAAGCAGTAGTAGAG
* *
10627540 CAGATCGAAGGCACCAGCCCTATCTCCTTGAGTAGCAGCGGAGTAGGTCGAAGATTGTAGATCTT
1 CAGATCGAA-GCACCAGCCCTATCTCCTTGAGCAGCAACGGAGTAGGTCGAAGATTGTAGATCTT
*
10627605 ATCTCCCTAAGTAGTAGTAGAG
65 ATCTCCCTAAGCAGTAGTAGAG
*
10627627 CAAATCGAAAGCACCA
1 CAGATCG-AAGCACCA
10627643 ACCTTATCCC
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
87 89 0.96
88 4 0.04
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (86 bp):
CAGATCGAAGCACCAGCCCTATCTCCTTGAGCAGCAACGGAGTAGGTCGAAGATTGTAGATCTTA
TCTCCCTAAGCAGTAGTAGAG
Found at i:10627696 original size:87 final size:87
Alignment explanation
Indices: 10627481--10627704 Score: 218
Period size: 87 Copynumber: 2.6 Consensus size: 87
10627471 CTTATCTCCT
* * * * * * * * *
10627481 TGAGCAGCAACGGAGTAGGTCGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 TGAGTAGCAGCGGAGCAAGTCGAAGATTGTAGATCTGATCTCCCTAAGTAGTAGTAGAGCAAATC
* * * *
10627546 GAAGGCACCAGCCCTATCTCCT
66 GAAAGCACCAACCCTATCCCCC
* * *
10627568 TGAGTAGCAGCGGAGTAGGTCGAAGATTGTAGATCTTATCTCCCTAAGTAGTAGTAGAGCAAATC
1 TGAGTAGCAGCGGAGCAAGTCGAAGATTGTAGATCTGATCTCCCTAAGTAGTAGTAGAGCAAATC
*
10627633 GAAAGCACCAACCTTATCCCCC
66 GAAAGCACCAACCCTATCCCCC
* * * *
10627655 TGAAGTTGCAGTGGGGCAAGTTGAAGATATG-AG-TCTGATCTCCCTGAAGT
1 TG-AGTAGCAGCGGAGCAAGTCGAAGAT-TGTAGATCTGATCTCCCT-AAGT
10627705 TGCAATGGAA
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
87 89 0.77
88 25 0.22
89 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (87 bp):
TGAGTAGCAGCGGAGCAAGTCGAAGATTGTAGATCTGATCTCCCTAAGTAGTAGTAGAGCAAATC
GAAAGCACCAACCCTATCCCCC
Found at i:10628043 original size:44 final size:45
Alignment explanation
Indices: 10627933--10628045 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 45
10627923 TAACAAGTCT
* * * * * *
10627933 TATCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATAGTGAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCC
* * *
10627978 TATGTCCCTGAAGTCGCAGTGGAGTAGACTGAAGCTACT-AATCC
1 TATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCC
*
10628022 TATCTCCCTGAAGTTGTAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
10628046 CGGATTAAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
44 24 0.43
45 32 0.57
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCC
Found at i:10630359 original size:30 final size:30
Alignment explanation
Indices: 10630293--10630359 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
10630283 CAAATACATT
* * *
10630293 TATATACATGCATACGTATTTTATGATAGA
1 TATATATATACATACATATTTTATGATAGA
*
10630323 TATATATATACATACATACTTTTAT-ATATA
1 TATATATATACATACATA-TTTTATGATAGA
10630353 TATATAT
1 TATATAT
10630360 TATCGTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 26 0.81
31 6 0.19
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (30 bp):
TATATATATACATACATATTTTATGATAGA
Found at i:10631379 original size:29 final size:31
Alignment explanation
Indices: 10631317--10631390 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 31
10631307 ACTACCAAAA
* *
10631317 TAGTCACTTTTGTTTGGCACATGTTACATTT
1 TAGTCACTTATGTTTGGCAAATGTTACATTT
*
10631348 TAGTCACTTATGTTT-G-AAATGTTACGTTT
1 TAGTCACTTATGTTTGGCAAATGTTACATTT
10631377 TAGTCACTTATGTT
1 TAGTCACTTATGTT
10631391 ATCACGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 25 0.62
30 1 0.03
31 14 0.35
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (31 bp):
TAGTCACTTATGTTTGGCAAATGTTACATTT
Found at i:10634663 original size:26 final size:26
Alignment explanation
Indices: 10634600--10634665 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
10634590 AGTTTGGCAA
10634600 TGCTTTTGAAAAGTCTTTTTAAAAAG
1 TGCTTTTGAAAAGTCTTTTTAAAAAG
** * *
10634626 TGC-CGTGAAAAAGTAC-TTTTGAGAAG
1 TGCTTTTG-AAAAGT-CTTTTTAAAAAG
10634652 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
10634666 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
25 2 0.06
26 26 0.84
27 3 0.10
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTCTTTTTAAAAAG
Found at i:10638466 original size:16 final size:16
Alignment explanation
Indices: 10638442--10638476 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10638432 ATGATCACTT
*
10638442 AATAGTATTAATTAAC
1 AATAATATTAATTAAC
10638458 AATAATATTAATTAAC
1 AATAATATTAATTAAC
10638474 AAT
1 AAT
10638477 CATTTTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (16 bp):
AATAATATTAATTAAC
Found at i:10639401 original size:21 final size:21
Alignment explanation
Indices: 10639375--10639444 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
10639365 TTTTACTTTG
* * *
10639375 CTCTGCTTCCCTCACTACAGC
1 CTCTGCTTCCCTCGCTGCCGC
10639396 CTCTGCTT-CCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCCGC
*
10639416 CTCTACTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCCGC
10639437 CTCTGCTT
1 CTCTGCTT
10639445 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
20 16 0.37
21 27 0.63
ACGTcount: A:0.06, C:0.49, G:0.14, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCCGC
Found at i:10643689 original size:21 final size:20
Alignment explanation
Indices: 10643663--10643702 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
10643653 TGCTATGCAA
*
10643663 ATAATTTTTTTCTATTTTTTT
1 ATAATTTTATT-TATTTTTTT
10643684 ATAATTTTATTTATTTTTT
1 ATAATTTTATTTATTTTTT
10643703 GCGGCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (20 bp):
ATAATTTTATTTATTTTTTT
Found at i:10643984 original size:104 final size:106
Alignment explanation
Indices: 10643759--10644052 Score: 411
Period size: 105 Copynumber: 2.8 Consensus size: 106
10643749 TTTTTGATAT
* *
10643759 TATTTCATTTTGAACAAAATGATGCCGTTTTGCTCTGCACAAAATTTTTTATTTTGTTTTTT-TA
1 TATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAAAATTTTTTATTTTGTTTTTTATA
* * * *
10643823 AATTGATTTATTTTTTGCGGCGTTTTTATGGAAAACGCCGC
66 AATTGATTTATTTTCTGCGGCGTTTTTATGAAAAACACCAC
* *
10643864 AATTTCATTTTGAACAAAATGACGCCGTTTTTCTATGCACAAAATTTTTTATTTTGTTTTTTATA
1 TATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAAAATTTTTTATTTTGTTTTTTATA
*
10643929 AATTGATTT-TTTTCT-CGGCGTTTTTATGAAAAATACCAC
66 AATTGATTTATTTTCTGCGGCGTTTTTATGAAAAACACCAC
* *
10643968 TATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCA-AATAATTTTTT-TATTATTTTTTAT
1 TATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAA-AATTTTTTATTTTGTTTTTTAT
* *
10644031 AATTTTATTTATATTT-TGCGGC
65 AAATTGATTTAT-TTTCTGCGGC
10644053 CGCTATTGCT
Statistics
Matches: 169, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
103 21 0.12
104 67 0.40
105 70 0.41
106 11 0.07
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.49
Consensus pattern (106 bp):
TATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAAAATTTTTTATTTTGTTTTTTATA
AATTGATTTATTTTCTGCGGCGTTTTTATGAAAAACACCAC
Done.