Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 34 of 199
Found at i:10644032 original size:21 final size:21
Alignment explanation
Indices: 10644008--10644047 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
10643998 TGCTATGCAA
10644008 ATAATTTT-TTTATTATTTTTT
1 ATAATTTTATTTA-TATTTTTT
10644029 ATAATTTTATTTATATTTT
1 ATAATTTTATTTATATTTT
10644048 GCGGCCGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
ATAATTTTATTTATATTTTTT
Found at i:10644454 original size:14 final size:14
Alignment explanation
Indices: 10644435--10644469 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
10644425 AACCTTAAAT
10644435 CCCTAAC-TCTTAAC
1 CCCTAACGTC-TAAC
10644449 CCCTAACGTCTAAC
1 CCCTAACGTCTAAC
10644463 CCCTAAC
1 CCCTAAC
10644470 CCCTAAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 18 0.90
15 2 0.10
ACGTcount: A:0.29, C:0.46, G:0.03, T:0.23
Consensus pattern (14 bp):
CCCTAACGTCTAAC
Found at i:10644514 original size:50 final size:50
Alignment explanation
Indices: 10644410--10644533 Score: 119
Period size: 50 Copynumber: 2.5 Consensus size: 50
10644400 CCTTAACTCG
* * * * *
10644410 ACCCCTGAATCCCTAAACCTTAAATCCCTAACTCTTAACCCCTAACGTCTA
1 ACCCCT-AACCCCTAAACCTTAAATCCCTAACCCTTAAACCATAACGCCTA
*
10644461 ACCCCTAACCCCTAAACCTTAAATCCC-AACCCTTAAATCATAATC-CCTA
1 ACCCCTAACCCCTAAACCTTAAATCCCTAACCCTTAAACCATAA-CGCCTA
* *
10644510 AACCC-ATGCTCCCTAAACCTTAAA
1 ACCCCTA-AC-CCCTAAACCTTAAA
10644534 ATATGAACTC
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
48 1 0.02
49 20 0.32
50 35 0.56
51 6 0.10
ACGTcount: A:0.35, C:0.40, G:0.02, T:0.23
Consensus pattern (50 bp):
ACCCCTAACCCCTAAACCTTAAATCCCTAACCCTTAAACCATAACGCCTA
Found at i:10644812 original size:14 final size:14
Alignment explanation
Indices: 10644795--10644821 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10644785 AACCCTTAAA
10644795 CCATAATCCCTAAT
1 CCATAATCCCTAAT
10644809 CCATAATCCCTAA
1 CCATAATCCCTAA
10644822 ACCCATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:10645136 original size:114 final size:114
Alignment explanation
Indices: 10644906--10645402 Score: 604
Period size: 114 Copynumber: 4.3 Consensus size: 114
10644896 CCAAAAACCC
* * * **
10644906 TATGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGTATTAGTGGCGCTTTCC
1 TATG-TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGC-TTCC
* * *
10644971 TAAACAACGCCGCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCT
64 TAAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* *
10645022 TATGTCTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTA
1 TATGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGCTTCCTA
* *
10645087 AAAAACGCCACTAAATCCGCGAAAGCTCAGAAAACGACGTCGTTGGGCT
66 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* * * *
10645136 TA-GTTTATTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTTAGCATTAACGGTGCTTTCT
1 TATGTTT-TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGCTTCCT
* * *
10645200 AAAGAAACGCCGCTAAATCCCCCGAAAACTCAGAAAACGGCATCGTTGGGCT
65 AAA-AAACGCCACTAAAT-CCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* * * * * * * * * *
10645252 TATGTTTCTTTGCAGTGCTTCCACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGATTTCTA
1 TATGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGCTTCCTA
* * * *
10645317 CAAAATGCCACTAAGTCCCCGAAAGCT-AGAAAACGGGGTCGTTGGGCT
66 AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* * *
10645365 TAGGTTTTTTTG-GGCGCTTTGTCAAAAACGTCGCTAAA
1 TATGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
10645403 TCCACGAAAG
Statistics
Matches: 330, Mismatches: 47, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
112 19 0.06
113 32 0.10
114 117 0.35
115 74 0.22
116 84 0.25
117 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (114 bp):
TATGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGCTTCCTA
AAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
Found at i:10645363 original size:229 final size:229
Alignment explanation
Indices: 10644911--10645402 Score: 643
Period size: 230 Copynumber: 2.2 Consensus size: 229
10644901 AACCCTATGT
* * ** *
10644911 TTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGACCTGAGTATTAGTGGCGCTTTCCTAAAC
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAACGGCGCTTTCCTAAAA
* * * *
10644976 AACGCCGCTAAATCCCCGAAAGCTTAGAAAACGGCGTCGTTGGGCTTATGTCTTTTTGCGGCGCT
66 AACGCCGCTAAATCCCCGAAAACTCAGAAAACGGCATCGTTGGGCTTATGTCTTTTTGCAGCGCT
* * * * * * *
10645041 TTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCACTAAATCCG
131 TCCACAAAAACGCCGCTAAAGCACTGAACATTAACGGCGATTCCTAAAAAACGCCACTAAATCCC
10645106 CGAAAGCTCAGAAAACGACGTCGTTGGGCTTA-G
196 CGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGG
* * * *
10645139 TTTATTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTTAGCATTAACGGTGCTTT-CTAAA
1 TTT-TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAACGGCGCTTTCCTAAA
10645203 GAAACGCCGCTAAATCCCCCGAAAACTCAGAAAACGGCATCGTTGGGCTTATGT-TTCTTTGCAG
65 -AAACGCCGCTAAAT-CCCCGAAAACTCAGAAAACGGCATCGTTGGGCTTATGTCTT-TTTGCAG
* * * * * *
10645267 TGCTTCCACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGATTTCTACAAAATGCCACTAAG
127 CGCTTCCACAAAAACGCCGCTAAAGCACTGAACATTAACGGCGATTCCTAAAAAACGCCACTAAA
**
10645332 TCCCCGAAAGCT-AGAAAACGGGGTCGTTGGGCTTAGG
192 TCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGG
* *
10645369 TTTTTTTG-GGCGCTTTGTCAAAAACGTCGCTAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
10645403 TCCACGAAAG
Statistics
Matches: 228, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
228 31 0.14
229 88 0.39
230 109 0.48
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (229 bp):
TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAACGGCGCTTTCCTAAAA
AACGCCGCTAAATCCCCGAAAACTCAGAAAACGGCATCGTTGGGCTTATGTCTTTTTGCAGCGCT
TCCACAAAAACGCCGCTAAAGCACTGAACATTAACGGCGATTCCTAAAAAACGCCACTAAATCCC
CGAAAGCTCAGAAAACGACGTCGTTGGGCTTAGG
Found at i:10645464 original size:72 final size:71
Alignment explanation
Indices: 10645327--10645463 Score: 179
Period size: 71 Copynumber: 1.9 Consensus size: 71
10645317 CAAAATGCCA
* * ** *
10645327 CTAAGTCCCCGAAAGCTAGAAAACGGGGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTGTCAAAA
1 CTAAATCCACGAAAGCTAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTCTCAAAA
10645392 ACGTCG
66 ACGTCG
* *
10645398 CTAAATCCACGAAAGCTCAGAAAACGACGTCGTTGGGCTTATG-TTTTTTGCGGTGC-TTCTCAA
1 CTAAATCCACGAAAGCT-AGAAAACGACGTCGTTGGGCTTAGGTTTTTTTG-GGCGCTTTCTCAA
10645461 AAA
64 AAA
10645464 ATGCTGCTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
71 31 0.54
72 26 0.46
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (71 bp):
CTAAATCCACGAAAGCTAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTCTCAAAA
ACGTCG
Found at i:10645473 original size:72 final size:71
Alignment explanation
Indices: 10645318--10645474 Score: 167
Period size: 72 Copynumber: 2.2 Consensus size: 71
10645308 CGATTTCTAC
** * * **
10645318 AAAATGCCACTAAGTCCCCGAAAGCTAGAAAACGGGGTCGTTGGGCTTAGGTTTTTTTGGGCGCT
1 AAAATGCTGCTAAATCCACGAAAGCTAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGGGCGCT
*
10645383 TTGTCA
66 TTCTCA
* * *
10645389 AAAACG-TCGCTAAATCCACGAAAGCTCAGAAAACGACGTCGTTGGGCTTATG-TTTTTTGCGGT
1 AAAATGCT-GCTAAATCCACGAAAGCT-AGAAAACGACGTCGTTGGGCTTAGGTTTTTTTG-GGC
10645452 GC-TTCTCAA
63 GCTTTCTC-A
10645461 AAAATGCTGCTAAA
1 AAAATGCTGCTAAA
10645475 GCCCTGGGCA
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
71 31 0.44
72 38 0.54
73 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (71 bp):
AAAATGCTGCTAAATCCACGAAAGCTAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGGGCGCT
TTCTCA
Found at i:10645522 original size:184 final size:187
Alignment explanation
Indices: 10645204--10645558 Score: 506
Period size: 185 Copynumber: 1.9 Consensus size: 187
10645194 CTTTCTAAAG
* *
10645204 AAACGCCGCTAAATCCCCCGAAAACTCAGAAAACGGCATCGTTGGGCTTATGTTTCTTTGCAGTG
1 AAACGCCGCTAAATCCCACGAAAACTCAGAAAACGACATCGTTGGGCTTATGTTTCTTTGCAGTG
* *
10645269 CTTCCACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGATTTCTACAAAATGCCACTAAGTC
66 CTTCCACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGATTTCTACAAAACGCCACTAAATC
*
10645334 CCCGAAAGCT-AGAAAACGGGGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTGTCAA
131 CCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTGTCAA
* * * *
10645390 AAACGTCGCTAAAT-CCACGAAAGCTCAGAAAACGACGTCGTTGGGCTTATGTTT-TTTGCGGTG
1 AAACGCCGCTAAATCCCACGAAAACTCAGAAAACGACATCGTTGGGCTTATGTTTCTTTGCAGTG
* * ** * *
10645453 CTTCTCA-AAAAATGCTGCTAAAGCCCTGGGCATTAGCGGC-ACTTTCCTA-AAAACGCCGCTAA
66 CTTC-CACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGA-TTT-CTACAAAACGCCACTAA
10645515 ATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
128 ATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTT
10645559 GCGGCGCTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
183 1 0.01
184 66 0.44
185 70 0.47
186 13 0.09
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (187 bp):
AAACGCCGCTAAATCCCACGAAAACTCAGAAAACGACATCGTTGGGCTTATGTTTCTTTGCAGTG
CTTCCACAAAAATGCCGCTAAAGCACTGAACATTAACGGCGATTTCTACAAAACGCCACTAAATC
CCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGGGCGCTTTGTCAA
Found at i:10647148 original size:12 final size:12
Alignment explanation
Indices: 10647131--10647156 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10647121 TTTTCAATTT
10647131 TTGAAATTTTTA
1 TTGAAATTTTTA
10647143 TTGAAATTTTTA
1 TTGAAATTTTTA
10647155 TT
1 TT
10647157 TTGTTCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (12 bp):
TTGAAATTTTTA
Found at i:10648489 original size:20 final size:20
Alignment explanation
Indices: 10648464--10648501 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10648454 TTGAAGGTCC
10648464 AAAACTACAA-GCCCAAATAA
1 AAAACTA-AAGGCCCAAATAA
10648484 AAAACTAAAGGCCCAAAT
1 AAAACTAAAGGCCCAAAT
10648502 CGCCCAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.58, C:0.24, G:0.08, T:0.11
Consensus pattern (20 bp):
AAAACTAAAGGCCCAAATAA
Found at i:10649676 original size:52 final size:52
Alignment explanation
Indices: 10649598--10649697 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
10649588 TCAATTAATT
*
10649598 TCAATTTTATATTTTATTTATTTATTTATTATTCTTTTACTTTTTAAATACC
1 TCAATTTTATATTTTATTTATTTATTTATTATTCTTTTACTTCTTAAATACC
10649650 TCAATTTTATATTTGT-TTTATTTATTTATTATTCTTTTACTTCTTAAA
1 TCAATTTTATATTT-TATTTATTTATTTATTATTCTTTTACTTCTTAAA
10649698 AATTTAAATT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 45 0.98
53 1 0.02
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (52 bp):
TCAATTTTATATTTTATTTATTTATTTATTATTCTTTTACTTCTTAAATACC
Found at i:10649708 original size:52 final size:51
Alignment explanation
Indices: 10649594--10649769 Score: 165
Period size: 52 Copynumber: 3.2 Consensus size: 51
10649584 TCATTCAATT
*
10649594 AATTTCAATTTTATATTT-TATTTATTTATTTATTATTCTTTTACTTTTTAAA
1 AATTTAAATTTTATATTTGT-TTTATTTATTTATTATTCTTTTAC-TTTTAAA
* ** *
10649646 TACCTCAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTTCTTAAA
1 AATTTAAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTT-TTAAA
10649698 AATTTAAATTTATATTATGTATCTGTTTTATCTATTTATTTATTATTCTTTTACCTTTTAAA
1 AATTTAAATTT-TA-TA--T-T-TG--TT-T-TATTTATTTATTATTCTTTTA-CTTTTAAA
*
10649760 TATTTAAATT
1 AATTTAAATT
10649770 AGATATTATT
Statistics
Matches: 103, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
51 2 0.02
52 51 0.50
53 3 0.03
54 2 0.02
56 1 0.01
57 1 0.01
58 2 0.02
60 2 0.02
61 1 0.01
62 35 0.34
63 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (51 bp):
AATTTAAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTTTTAAA
Found at i:10654028 original size:24 final size:24
Alignment explanation
Indices: 10653996--10654055 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
10653986 TAGACTAATC
10653996 AGAGTTTGATTGAAACAAATAAAT
1 AGAGTTTGATTGAAACAAATAAAT
*
10654020 AGAGTTTGAATGAAACAAATAAAT
1 AGAGTTTGATTGAAACAAATAAAT
*
10654044 AGAGTTTAATTG
1 AGAGTTTGATTG
10654056 GAAGATTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.30
Consensus pattern (24 bp):
AGAGTTTGATTGAAACAAATAAAT
Found at i:10661088 original size:45 final size:46
Alignment explanation
Indices: 10660987--10661095 Score: 130
Period size: 45 Copynumber: 2.4 Consensus size: 46
10660977 TAATTTGTTG
* *
10660987 CAACGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTA
1 CAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTA
* ** *
10661033 CAACGCCAGGGAAA-AAGATTCGTTGCCTTCAGCTTTGCTCCACTG
1 CAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTA
** *
10661078 CAACTTCAGGGAGATAAG
1 CAACGCCAGGGAAATAAG
10661096 GCTGGTGACT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 37 0.70
46 16 0.30
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (46 bp):
CAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTA
Found at i:10661308 original size:51 final size:51
Alignment explanation
Indices: 10661248--10661389 Score: 167
Period size: 51 Copynumber: 2.8 Consensus size: 51
10661238 CCTCAACTTT
*
10661248 AACGCCAGGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTACTCCACTGC
1 AACGCCAGGGAGATAAGATCTGCTGCCTTCAGCTTTAATCTACTCCACTGC
* * * * * * * *
10661299 AACGCCAGGGAAACAAGATCCGCTACTTTTAGCTTTAATCTATTCCACTGT
1 AACGCCAGGGAGATAAGATCTGCTGCCTTCAGCTTTAATCTACTCCACTGC
* * * *
10661350 AATGCCAAGGAGATAGGATCTGCTGCCTTCAACTTTAATC
1 AACGCCAGGGAGATAAGATCTGCTGCCTTCAGCTTTAATC
10661390 CGCTTCACTT
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (51 bp):
AACGCCAGGGAGATAAGATCTGCTGCCTTCAGCTTTAATCTACTCCACTGC
Found at i:10661485 original size:51 final size:51
Alignment explanation
Indices: 10661401--10661501 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
10661391 GCTTCACTTC
* *
10661401 AGCTTTAATCTATTCAACTGCAATGTCAGGGAAACAAGATTCGCTACCTTT
1 AGCTTTAATCTATTCAACTGCAACGTCAAGGAAACAAGATTCGCTACCTTT
* * * *
10661452 AGCTTTAATCTGTTCCACTGCAACG-CTAAGGAAATAAGATTCGCTGCCTT
1 AGCTTTAATCTATTCAACTGCAACGTC-AAGGAAACAAGATTCGCTACCTT
10661502 CAGTCTGCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (51 bp):
AGCTTTAATCTATTCAACTGCAACGTCAAGGAAACAAGATTCGCTACCTTT
Found at i:10661498 original size:123 final size:123
Alignment explanation
Indices: 10661274--10661503 Score: 336
Period size: 123 Copynumber: 1.9 Consensus size: 123
10661264 GATTTGCTGC
* *
10661274 CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATCCGCTACTTTTAGCTTTAATC
1 CTTCAGCTTTAATCTACTCAACTGCAACGCCAGGGAAACAAGATCCGCTACCTTTAGCTTTAATC
* * * *
10661339 TATTCCACTGTAATGCCAAGGAGATAGGATCTGCTGCCTTCAACTTTAATCCGCTTCA
66 TATTCCACTGCAACGCCAAGGAAATAAGATCTGCTGCCTTCAACTTTAATCCGCTTCA
* * * *
10661397 CTTCAGCTTTAATCTATTCAACTGCAATGTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTACTCAACTGCAACGCCAGGGAAACAAGATCCGCTACCTTTAGCTTTAATC
* *
10661462 TGTTCCACTGCAACGCTAAGGAAATAAGAT-TCGCTGCCTTCA
66 TATTCCACTGCAACGCCAAGGAAATAAGATCT-GCTGCCTTCA
10661504 GTCTGCTCTA
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 1 0.01
123 93 0.99
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (123 bp):
CTTCAGCTTTAATCTACTCAACTGCAACGCCAGGGAAACAAGATCCGCTACCTTTAGCTTTAATC
TATTCCACTGCAACGCCAAGGAAATAAGATCTGCTGCCTTCAACTTTAATCCGCTTCA
Found at i:10662855 original size:45 final size:45
Alignment explanation
Indices: 10662785--10662912 Score: 184
Period size: 45 Copynumber: 2.8 Consensus size: 45
10662775 GCCTCTCCCT
** * * *
10662785 TTTTTTTAGGACTTTAAGCGTCCTTTACGCGTTTTCACATTGGTC
1 TTTTTTTAGGACTAAAAACGCCCTTTACGGGTTTTCACATTGGTC
*
10662830 TTTTTTTAGGACTAAAAACGCCCTTTACGGGTTTTCACCTTGGTC
1 TTTTTTTAGGACTAAAAACGCCCTTTACGGGTTTTCACATTGGTC
* *
10662875 TTTTTTTAGGACTGAAAACACCCTTTACGGGTTTTCAC
1 TTTTTTTAGGACTAAAAACGCCCTTTACGGGTTTTCAC
10662913 CTTAATACCT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (45 bp):
TTTTTTTAGGACTAAAAACGCCCTTTACGGGTTTTCACATTGGTC
Found at i:10675126 original size:3 final size:3
Alignment explanation
Indices: 10675105--10675146 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
10675095 AATGGAAACC
* * *
10675105 ATA A-A ATA ATA TTA CTA ATA ATA ATG ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10675147 AGTTAAAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10676746 original size:27 final size:26
Alignment explanation
Indices: 10676697--10676747 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
10676687 GTGAACTTTT
* *
10676697 TTTCTTTTTCTTTCTATTTTTCTCCC
1 TTTCTTTTTCTATCTATTCTTCTCCC
*
10676723 TTTCTTTTTCTCATCTCTTCTTCTC
1 TTTCTTTTTCT-ATCTATTCTTCTC
10676748 AAAGCCTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.04, C:0.29, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTCTTTTTCTATCTATTCTTCTCCC
Found at i:10677399 original size:3 final size:3
Alignment explanation
Indices: 10677391--10677417 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10677381 GCTAAAATGG
10677391 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
10677418 AACCCTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10678965 original size:22 final size:22
Alignment explanation
Indices: 10678935--10678977 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
10678925 ACACCAAAAC
*
10678935 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
10678957 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
10678978 AGCGCCGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:10679169 original size:42 final size:43
Alignment explanation
Indices: 10679049--10679227 Score: 234
Period size: 43 Copynumber: 4.2 Consensus size: 43
10679039 GCGTCGCTAA
* * *
10679049 CTTTAGCAGCGCTTTTCCCACAAACGCCGCTATAGATCAGAAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
*
10679092 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* *
10679135 CTTTAGCGGCACTTTT-ACACAAACGCCGCTATAGATCAAGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* *** * *
10679177 CTTTAGCGGCGCTTTTTTTATAAACGCCGCTATAGATCATGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
*
10679220 TTTTAGCG
1 CTTTAGCG
10679228 ACGTTTTTTT
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
42 39 0.32
43 83 0.68
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
Found at i:10679171 original size:85 final size:86
Alignment explanation
Indices: 10679049--10679227 Score: 236
Period size: 85 Copynumber: 2.1 Consensus size: 86
10679039 GCGTCGCTAA
* * *
10679049 CTTTAGCAGCGCTTTTCCCACAAACGCCGCTATAGATC-AGAACCTTTAGCGACACTTTTCCCAC
1 CTTTAGCGGCACTTTTCACACAAACGCCGCTATAGATCAAG-ACCTTTAGCGACACTTTTCCCAC
10679113 AAACGCCGCTATAGATCAGGAC
65 AAACGCCGCTATAGATCAGGAC
* * *** *
10679135 CTTTAGCGGCACTTTT-ACACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTTTATA
1 CTTTAGCGGCACTTTTCACACAAACGCCGCTATAGATCAAGACCTTTAGCGACACTTTTCCCACA
*
10679199 AACGCCGCTATAGATCATGAC
66 AACGCCGCTATAGATCAGGAC
*
10679220 TTTTAGCG
1 CTTTAGCG
10679228 ACGTTTTTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
85 65 0.80
86 16 0.20
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (86 bp):
CTTTAGCGGCACTTTTCACACAAACGCCGCTATAGATCAAGACCTTTAGCGACACTTTTCCCACA
AACGCCGCTATAGATCAGGAC
Found at i:10679225 original size:43 final size:42
Alignment explanation
Indices: 10679067--10679251 Score: 219
Period size: 43 Copynumber: 4.3 Consensus size: 42
10679057 GCGCTTTTCC
**
10679067 CACAAACGCCGCTATAGATCAGAACCTTTAGCGACACTTTTCC
1 CACAAACGCCGCTATAGATCAG-ACCTTTAGCGACACTTTTTT
* *
10679110 CACAAACGCCGCTATAGATCAGGACCTTTAGCGGCAC-TTTTA
1 CACAAACGCCGCTATAGATCA-GACCTTTAGCGACACTTTTTT
* *
10679152 CACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTT
1 CACAAACGCCGCTATAGATC-AGACCTTTAGCGACACTTTTTT
* * * **
10679195 TATAAACGCCGCTATAGATCATGACTTTTAGCGACGTTTTTTT
1 CACAAACGCCGCTATAGATCA-GACCTTTAGCGACACTTTTTT
*
10679238 CGCAAACGCCGCTA
1 CACAAACGCCGCTA
10679252 AAAGTGCCAT
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
42 38 0.30
43 86 0.69
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (42 bp):
CACAAACGCCGCTATAGATCAGACCTTTAGCGACACTTTTTT
Found at i:10683834 original size:21 final size:21
Alignment explanation
Indices: 10683810--10683850 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
10683800 AACCCTAAAT
10683810 CCCTAACTCTTAACCCCTAAC
1 CCCTAACTCTTAACCCCTAAC
*
10683831 CCCTAACTCTTAATCCCTAA
1 CCCTAACTCTTAACCCCTAA
10683851 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCTAACTCTTAACCCCTAAC
Found at i:10684087 original size:23 final size:24
Alignment explanation
Indices: 10684048--10684092 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
10684038 TATATGAAAT
*
10684048 TATTTAATATATAAATTAAAAAAA
1 TATTTAATAAATAAATTAAAAAAA
10684072 TATTTAA-AAATAAATTAAAAA
1 TATTTAATAAATAAATTAAAAA
10684093 TAATTAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
TATTTAATAAATAAATTAAAAAAA
Found at i:10684089 original size:11 final size:11
Alignment explanation
Indices: 10684058--10684099 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
10684048 TATTTAATAT
10684058 ATAAATTAAAA
1 ATAAATTAAAA
10684069 A-AATATTTAAAA
1 ATAA-A-TTAAAA
10684081 ATAAATTAAAA
1 ATAAATTAAAA
10684092 AT-AATTAA
1 ATAAATTAA
10684100 TCTAAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 8 0.29
11 10 0.36
12 8 0.29
13 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAAATTAAAA
Found at i:10684173 original size:22 final size:22
Alignment explanation
Indices: 10684130--10684192 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
10684120 TTGACCCATG
* *
10684130 AACTCATAAACCCTAAATCCCT
1 AACTCATAAACCCCAAACCCCT
* *
10684152 AACTCTTAACCCCCAAACCCCT
1 AACTCATAAACCCCAAACCCCT
10684174 AAC-CACT-AACCCCTAAACC
1 AACTCA-TAAACCCC-AAACC
10684193 TTAAATCTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 6 0.18
22 27 0.82
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.17
Consensus pattern (22 bp):
AACTCATAAACCCCAAACCCCT
Found at i:10684219 original size:20 final size:21
Alignment explanation
Indices: 10684181--10684221 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10684171 CCTAACCACT
*
10684181 AACCCCTAAACCTTAAATCTC
1 AACCCCTAAACCATAAATCTC
*
10684202 AACCCTTAAACCAT-AATCTC
1 AACCCCTAAACCATAAATCTC
10684222 TAATCCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
AACCCCTAAACCATAAATCTC
Found at i:10684243 original size:15 final size:15
Alignment explanation
Indices: 10684205--10684245 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10684195 AAATCTCAAC
10684205 CCTTAAA-CCATAAT
1 CCTTAAATCCATAAT
10684219 -CTCT-AATCCATAAT
1 CCT-TAAATCCATAAT
10684233 CCTTAAATCCATA
1 CCTTAAATCCATA
10684246 CTCCATAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 4 0.17
14 9 0.39
15 10 0.43
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (15 bp):
CCTTAAATCCATAAT
Found at i:10684538 original size:41 final size:40
Alignment explanation
Indices: 10684478--10684593 Score: 162
Period size: 41 Copynumber: 2.8 Consensus size: 40
10684468 TAAAATGTTT
10684478 TTAGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCCTA-CCA
1 TTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGCCCC-AGCCA
* *
10684519 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAGGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGCCCCAGCCA
*
10684560 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAGCC
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCC
10684594 ACGAAATGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
40 2 0.03
41 62 0.91
42 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCCAGCCA
Found at i:10684678 original size:39 final size:39
Alignment explanation
Indices: 10684629--10684781 Score: 137
Period size: 39 Copynumber: 3.8 Consensus size: 39
10684619 TGGGCTAAGG
*
10684629 TTTTTTGCGGCGTTTTTTGAAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCGTTTTTTGAAAAACGCCGCTAATGCTCA
* * *
10684668 TTTTTAGCGGCATTTTTTTAAAAACGCCACTAATGCTCAA
1 TTTTTAGCGGCGTTTTTTGAAAAACGCCGCTAATGCTC-A
* * * ** * *
10684708 TCTTTAGTGGCG-ATTTCCAGAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTTGA-AAAACGCCGCTAATGC-TCA
* **
10684748 TTTTTACCGGCGTTTTTTGTCCAAACGCCGCTAA
1 TTTTTAGCGGCGTTTTTTG-AAAAACGCCGCTAA
10684782 AAGTGCCGCT
Statistics
Matches: 87, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
39 38 0.44
40 34 0.39
41 15 0.17
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTTGAAAAACGCCGCTAATGCTCA
Found at i:10685524 original size:41 final size:41
Alignment explanation
Indices: 10685456--10685639 Score: 268
Period size: 41 Copynumber: 4.5 Consensus size: 41
10685446 GAGTTTTTGG
* * *
10685456 GGTCTTTAACGACATTTTCTGAA-AAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTT-TGAATAAGCGCCGCTAATGCTCA
10685497 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
* *
10685538 GGTCTTTAGCGGTGTTTTTTAATAAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
10685579 GGTCTTTAGCGGCGTTTTT-AATAAGCGCCGCTAATGCTC-
1 GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
10685618 -GTACCTTTAGCGGCGTTTTTGA
1 GGT--CTTTAGCGGCGTTTTTGA
10685640 GGAAGCGCTG
Statistics
Matches: 133, Mismatches: 6, Indels: 8
0.90 0.04 0.05
Matches are distributed among these distances:
38 2 0.02
40 40 0.30
41 91 0.68
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (41 bp):
GGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCA
Found at i:10685646 original size:81 final size:81
Alignment explanation
Indices: 10685470--10685647 Score: 263
Period size: 81 Copynumber: 2.2 Consensus size: 81
10685460 TTTAACGACA
10685470 TTTTCTGAA-AAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATG
1 TTTT-TGAAGAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATG
*
10685534 CTCAGGTCTTTAGCGGTG
65 CTCA-GTCTTTAGCGGCG
* *
10685552 TTTTTTAATAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTT-AATAAGCGCCGCTAATGC
1 TTTTTGAAGAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGC
10685616 TC-GTACCTTTAGCGGCG
66 TCAGT--CTTTAGCGGCG
*
10685633 TTTTTGAGGAAGCGC
1 TTTTTGAAGAAGCGC
10685648 TGCAAAAACA
Statistics
Matches: 88, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
79 2 0.02
81 45 0.51
82 41 0.47
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.33
Consensus pattern (81 bp):
TTTTTGAAGAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGC
TCAGTCTTTAGCGGCG
Found at i:10686247 original size:20 final size:21
Alignment explanation
Indices: 10686213--10686251 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10686203 TAAATAATGT
10686213 TTAGGGGTTAGGGATTTAGGG
1 TTAGGGGTTAGGGATTTAGGG
*
10686234 TTAGGGTTTA-GGATTTAG
1 TTAGGGGTTAGGGATTTAG
10686252 ATTAATTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (21 bp):
TTAGGGGTTAGGGATTTAGGG
Found at i:10686251 original size:14 final size:14
Alignment explanation
Indices: 10686212--10686245 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10686202 TTAAATAATG
10686212 TTTAGGGGTTAGGGA
1 TTTA-GGGTTAGGGA
10686227 TTTAGGGTTAGGG-
1 TTTAGGGTTAGGGA
10686240 TTTAGG
1 TTTAGG
10686246 ATTTAGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 9 0.47
15 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
TTTAGGGTTAGGGA
Found at i:10686389 original size:89 final size:89
Alignment explanation
Indices: 10686233--10686474 Score: 461
Period size: 89 Copynumber: 2.7 Consensus size: 89
10686223 GGGATTTAGG
10686233 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTT-ATTTATATATTAAATAATGTTTAGAGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGAGGT
10686297 TATGGGTTAGTGATTCGGGGTCGA
66 TATGGGTTAGTGATTCGGGGTCGA
10686321 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGAGGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGAGGT
10686386 TATGGGTTAGTGATTCGGGGTCGA
66 TATGGGTTAGTGATTCGGGGTCGA
*
10686410 GTTAGGTTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAG-GGT
1 GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGAGGT
10686474 T
66 T
10686475 TAGGGGTAGG
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
88 40 0.26
89 112 0.74
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.47
Consensus pattern (89 bp):
GTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGAGGT
TATGGGTTAGTGATTCGGGGTCGA
Found at i:10686477 original size:7 final size:7
Alignment explanation
Indices: 10686465--10686508 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
10686455 ATTAAATAAT
10686465 GTTTAGG
1 GTTTAGG
10686472 GTTTAGG
1 GTTTAGG
*
10686479 G-GTAGG
1 GTTTAGG
*
10686485 GTTTGGG
1 GTTTAGG
10686492 GTTTAGG
1 GTTTAGG
10686499 GTTTAGG
1 GTTTAGG
10686506 GTT
1 GTT
10686509 AAAAGTTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 5 0.16
7 27 0.84
ACGTcount: A:0.11, C:0.00, G:0.48, T:0.41
Consensus pattern (7 bp):
GTTTAGG
Found at i:10686799 original size:9 final size:9
Alignment explanation
Indices: 10686787--10687555 Score: 270
Period size: 9 Copynumber: 87.8 Consensus size: 9
10686777 TTAAAATAGT
10686787 TAACTTACA
1 TAACTTACA
10686796 TAACTTA-A
1 TAACTTACA
10686804 TGAA-TTA-A
1 T-AACTTACA
* *
10686812 T-ATTATATA
1 TAACT-TACA
10686821 TAACTTACA
1 TAACTTACA
10686830 TAACTT--A
1 TAACTTACA
*
10686837 GAACTTACA
1 TAACTTACA
10686846 TAACTTACA
1 TAACTTACA
*
10686855 TTAATATTAAACA
1 -TAA-CTT--ACA
*
10686868 TAAATTACA
1 TAACTTACA
10686877 TAACTTACA
1 TAACTTACA
*
10686886 TTAATATTATACA
1 -T-A-ACT-TACA
*
10686899 TAAATTACA
1 TAACTTACA
10686908 TAACTTA-A
1 TAACTTACA
10686916 TTAA-TTA-A
1 -TAACTTACA
10686924 -AA--TACCA
1 TAACTTA-CA
*
10686931 GAA-TTACA
1 TAACTTACA
10686939 TAACTTACA
1 TAACTTACA
*
10686948 TTAATATTATACA
1 -T-A-ACT-TACA
*
10686961 TAAATTACA
1 TAACTTACA
10686970 TAACTTA-A
1 TAACTTACA
10686978 TTAA-TTA-A
1 -TAACTTACA
*
10686986 T-ATTATACA
1 TAACT-TACA
10686995 TAACTTACA
1 TAACTTACA
10687004 TAACTTAC-
1 TAACTTACA
10687012 -AACTTACA
1 TAACTTACA
*
10687020 TAACTTACTT
1 TAACTTAC-A
***
10687030 TTTTTTA-A
1 TAACTTACA
*
10687038 TTA-TT-CA
1 TAACTTACA
*
10687045 TAAATTACA
1 TAACTTACA
10687054 TAACTTACA
1 TAACTTACA
*
10687063 TTAATGCAATACA
1 -TAA--C-TTACA
*
10687076 TAAATTACA
1 TAACTTACA
10687085 TAACTTA-A
1 TAACTTACA
10687093 TTAA-TTA-A
1 -TAACTTACA
*
10687101 T-ATTATACA
1 TAACT-TACA
10687110 TAACTTACA
1 TAACTTACA
10687119 TAACTTAC-
1 TAACTTACA
10687127 -AACTTACA
1 TAACTTACA
10687135 TAACTTAC-
1 TAACTTACA
10687143 -AACTTACA
1 TAACTTACA
10687151 TAACTTACA
1 TAACTTACA
***
10687160 TTTGTTTA-A
1 -TAACTTACA
*
10687169 TTA-TT-CA
1 TAACTTACA
*
10687176 TAAATTACA
1 TAACTTACA
*
10687185 TAACTTACT
1 TAACTTACA
* *
10687194 TAATTTTCA
1 TAACTTACA
*
10687203 TAA--TAAA
1 TAACTTACA
10687210 TAACTTACA
1 TAACTTACA
10687219 TAACTTACA
1 TAACTTACA
*
10687228 TTAATATTATACA
1 -T-A-ACT-TACA
*
10687241 TAAATTACA
1 TAACTTACA
10687250 TAACTTA-A
1 TAACTTACA
10687258 TTAA-TATACA
1 -TAACT-TACA
*
10687268 TAAATTACA
1 TAACTTACA
10687277 TAACTTACA
1 TAACTTACA
*
10687286 TTAATATTATACA
1 -T-A-ACT-TACA
*
10687299 TAAATTACA
1 TAACTTACA
**
10687308 TAACTTAGT
1 TAACTTACA
10687317 TAA-TT-CA
1 TAACTTACA
*
10687324 T-ATTATACA
1 TAACT-TACA
10687333 TAACTTACA
1 TAACTTACA
*
10687342 CAACTTACA
1 TAACTTACA
10687351 TAACTTAC-
1 TAACTTACA
10687359 -AACTTACA
1 TAACTTACA
10687367 TAACTTACA
1 TAACTTACA
***
10687376 TTTTTTTA-A
1 -TAACTTACA
*
10687385 TTA-TT-CA
1 TAACTTACA
*
10687392 TAAATTACA
1 TAACTTACA
*
10687401 TAACTTACT
1 TAACTTACA
* *
10687410 TAATTTTCA
1 TAACTTACA
*
10687419 TAA--TAAA
1 TAACTTACA
10687426 TAACTTACA
1 TAACTTACA
10687435 TAACTTACA
1 TAACTTACA
10687444 TAA--TACA
1 TAACTTACA
*
10687451 TAACTTATA
1 TAACTTACA
*
10687460 TGACTTACA
1 TAACTTACA
10687469 TAACTTACA
1 TAACTTACA
*
10687478 T-A---GCA
1 TAACTTACA
* *
10687483 TAATTTTCA
1 TAACTTACA
10687492 TAA--TACA
1 TAACTTACA
*
10687499 CAACTTACA
1 TAACTTACA
* *
10687508 TAATTTTCA
1 TAACTTACA
*
10687517 TAA--TAAA
1 TAACTTACA
10687524 TAACTTACA
1 TAACTTACA
10687533 TAA--TACA
1 TAACTTACA
10687540 TAACTTACA
1 TAACTTACA
*
10687549 TAGCTTA
1 TAACTTA
10687556 ATTATACTTA
Statistics
Matches: 587, Mismatches: 82, Indels: 182
0.69 0.10 0.21
Matches are distributed among these distances:
5 5 0.01
6 7 0.01
7 91 0.16
8 52 0.09
9 337 0.57
10 40 0.07
11 13 0.02
12 19 0.03
13 23 0.04
ACGTcount: A:0.45, C:0.15, G:0.01, T:0.39
Consensus pattern (9 bp):
TAACTTACA
Found at i:10686825 original size:34 final size:34
Alignment explanation
Indices: 10686787--10687286 Score: 218
Period size: 34 Copynumber: 14.3 Consensus size: 34
10686777 TTAAAATAGT
* *
10686787 TAACTTACATAACTTAATGAATTAATATTATATA
1 TAACTTACATAACTTAATTAATTAATATTATACA
*
10686821 TAACTTACATAACTTAGAACTTACA-TAACTTACATTAATA-T
1 TAACTTACATAACTT--AA-TTA-ATTAA--T--ATT-ATACA
* * * *
10686862 TAAACATAAATTACATAACTTACATTAATATTATACA
1 T-AACTTACATAACTTAA-TTA-ATTAATATTATACA
*
10686899 TAAATTACATAACTTAATTAATTAA-A--ATACCA
1 TAACTTACATAACTTAATTAATTAATATTATA-CA
* *
10686931 GAA-TTACATAACTT-A--CATTAATATTATACA
1 TAACTTACATAACTTAATTAATTAATATTATACA
*
10686961 TAAATTACATAACTTAATTAATTAATATTATACA
1 TAACTTACATAACTTAATTAATTAATATTATACA
* ***
10686995 TAACTTACATAACTTACAACTTACA-TAACTTACTTTTTTT
1 TAACTTACATAACTT--AA-TTA-ATTAA--TA-TTATACA
* *
10687035 TAA-TTATTCATAAATTACA-TAACTTACATTAATGCAATACA
1 TAACTTA--CATAACTTA-ATTAA-TTA-A-T-AT--TATACA
*
10687076 TAAATTACATAACTTAATTAATTAATATTATACA
1 TAACTTACATAACTTAATTAATTAATATTATACA
* *
10687110 TAACTTACATAACTTACA--ACTTACATAACT-TAC-
1 TAACTTACATAACTTA-ATTAATTA-AT-ATTATACA
** * *
10687143 -AACTTACATAACTTACATTTGTTTA-ATTATTCA
1 TAACTTACATAACTTA-ATTAATTAATATTATACA
* * * * *
10687176 TAAATTACATAACTTACTTAATT-TTCATAATAAA
1 TAACTTACATAACTTAATTAATTAAT-ATTATACA
*
10687210 TAACTTACATAACTT-A--CATTAATATTATACA
1 TAACTTACATAACTTAATTAATTAATATTATACA
* *
10687241 TAAATTACATAACTTAATTAATATACATA-AATTACA
1 TAACTTACATAACTTAATTAAT-TA-ATATTA-TACA
10687277 TAACTTACAT
1 TAACTTACAT
10687287 TAATATTATA
Statistics
Matches: 356, Mismatches: 55, Indels: 108
0.69 0.11 0.21
Matches are distributed among these distances:
28 5 0.01
29 1 0.00
30 5 0.01
31 53 0.15
32 26 0.07
33 10 0.03
34 110 0.31
35 9 0.03
36 36 0.10
37 17 0.05
38 5 0.01
39 17 0.05
40 28 0.08
41 18 0.05
42 16 0.04
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (34 bp):
TAACTTACATAACTTAATTAATTAATATTATACA
Found at i:10686843 original size:16 final size:16
Alignment explanation
Indices: 10686822--10686852 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10686812 TATTATATAT
10686822 AACTTACATAACTTAG
1 AACTTACATAACTTAG
10686838 AACTTACATAACTTA
1 AACTTACATAACTTA
10686853 CATTAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (16 bp):
AACTTACATAACTTAG
Found at i:10686876 original size:47 final size:49
Alignment explanation
Indices: 10686788--10686883 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
10686778 TAAAATAGTT
* * *
10686788 AACTTACATAACTTAATGAATTAATATTATATATAACTTACATAACTTAG
1 AACTTACATAACTTAA-GAATTAATATTAAACATAAATTACATAACTTAG
*
10686838 AACTTACATAACTT-A-CATTAATATTAAACATAAATTACATAACTTA
1 AACTTACATAACTTAAGAATTAATATTAAACATAAATTACATAACTTA
10686884 CATTAATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
47 27 0.64
49 1 0.02
50 14 0.33
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (49 bp):
AACTTACATAACTTAAGAATTAATATTAAACATAAATTACATAACTTAG
Found at i:10686879 original size:31 final size:31
Alignment explanation
Indices: 10686841--10687448 Score: 356
Period size: 34 Copynumber: 18.6 Consensus size: 31
10686831 AACTTAGAAC
*
10686841 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
10686872 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
** *
10686903 TTACATAACTTA-ATTAATTAAAATACCA-GAA
1 TTACATAACTTACATTAA-TATTATA-CATAAA
10686934 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
10686965 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--CATTAATATTATACATAAA
*** *
10686999 TTACATAACTTACAACTTACATAACTTACTTTTTTTTAA
1 TTACATAACTTAC-A-TTA-AT-A-TTA---TACATAAA
* *
10687038 TTATTCATAAATTACATAACTTACATTAATGCAATACATAAA
1 TTA--CATAACTTAC---A-TTA-A-T-AT--TATACATAAA
* *
10687080 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--CATTAATATTATACATAAA
* *
10687114 TTACATAACTTACAACTTACATAACT-TAC--AAC
1 TTACATAACTTAC-A-TTA-AT-ATTATACATAAA
** *
10687146 TTACATAACTTACATTTGTTTAATTATTCATAAA
1 TTACATAACTTACA-TT-AAT-ATTATACATAAA
*
10687180 TTACATAACTTAC-TTAATTTTCATA-ATAAATAA
1 TTACATAACTTACATTAATATT-ATACAT--A-AA
10687213 CTTACATAACTTACATTAATATTATACATAAA
1 -TTACATAACTTACATTAATATTATACATAAA
10687245 TTACATAACTTA-ATT-A-A-TATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
10687272 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* * *
10687303 TTACATAACTTAGTTAATTCATATTATACATAAC
1 TTACATAACTTA---CATTAATATTATACATAAA
* * *
10687337 TTACACAACTTACA-T-A-ACT-TAC--AAC
1 TTACATAACTTACATTAATATTATACATAAA
** *
10687362 TTACATAACTTACATTTTTTTAATTATTCATAAA
1 TTACATAACTTACA--TTAAT-ATTATACATAAA
*
10687396 TTACATAACTTAC-TTAATTTTCATA-ATAAATAA
1 TTACATAACTTACATTAATATT-ATACAT--A-AA
10687429 CTTACATAACTTACA-TAATA
1 -TTACATAACTTACATTAATA
10687449 CATAACTTAT
Statistics
Matches: 461, Mismatches: 54, Indels: 121
0.72 0.08 0.19
Matches are distributed among these distances:
25 16 0.03
27 25 0.05
28 7 0.02
29 3 0.01
30 20 0.04
31 131 0.28
32 36 0.08
33 13 0.03
34 144 0.31
35 12 0.03
36 5 0.01
37 1 0.00
38 1 0.00
39 9 0.02
40 8 0.02
41 10 0.02
42 7 0.02
43 9 0.02
44 3 0.01
45 1 0.00
ACGTcount: A:0.45, C:0.15, G:0.01, T:0.39
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTATACATAAA
Found at i:10686898 original size:22 final size:22
Alignment explanation
Indices: 10686873--10686970 Score: 64
Period size: 22 Copynumber: 4.6 Consensus size: 22
10686863 AAACATAAAT
*
10686873 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
*
10686895 TACATAAATTACA-T-A-ACT-
1 TACATAAATTACATTAATATTA
* * * * *
10686913 TA-ATTAATTAAAATACCAGAAT-
1 TACATAAATTACATTA--ATATTA
*
10686935 TACATAACTTACATTAATATTA
1 TACATAAATTACATTAATATTA
10686957 TACATAAATTACAT
1 TACATAAATTACAT
10686971 AACTTAATTA
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
17 8 0.14
18 3 0.05
19 2 0.04
20 1 0.02
21 5 0.09
22 29 0.51
23 9 0.16
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (22 bp):
TACATAAATTACATTAATATTA
Found at i:10687017 original size:16 final size:16
Alignment explanation
Indices: 10686996--10687027 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10686986 TATTATACAT
10686996 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10687012 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10687028 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:10687065 original size:25 final size:25
Alignment explanation
Indices: 10687037--10687192 Score: 81
Period size: 25 Copynumber: 6.0 Consensus size: 25
10687027 CTTTTTTTTA
10687037 ATTATTCATAAATTACATAACTTAC
1 ATTATTCATAAATTACATAACTTAC
10687062 ATTAATGCAATACATAAATTACATAACTTA-
1 ATT-AT----T-CATAAATTACATAACTTAC
* *
10687092 ATTAATTAAT-ATTATACATAACTTAC
1 ATT-ATTCATAAAT-TACATAACTTAC
* * *
10687118 ATAACTT-ACAACTTACATAACTTAC
1 ATTA-TTCATAAATTACATAACTTAC
* ***
10687143 A--ACTTACATAACTTACATTTGTTTA-
1 ATTA-TT-CATAAATTACA-TAACTTAC
10687168 ATTATTCATAAATTACATAACTTAC
1 ATTATTCATAAATTACATAACTTAC
10687193 TTAATTTTCA
Statistics
Matches: 102, Mismatches: 13, Indels: 32
0.69 0.09 0.22
Matches are distributed among these distances:
23 4 0.04
24 6 0.06
25 51 0.50
26 15 0.15
27 1 0.01
30 7 0.07
31 18 0.18
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.38
Consensus pattern (25 bp):
ATTATTCATAAATTACATAACTTAC
Found at i:10687065 original size:115 final size:115
Alignment explanation
Indices: 10686932--10687142 Score: 395
Period size: 115 Copynumber: 1.8 Consensus size: 115
10686922 AAAATACCAG
**
10686932 AATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATA
1 AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
10686997 ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
66 ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
*
10687047 AATTACATAACTTACATTAATGCAATACATAAATTACATAACTTAATTAATTAATATTATACATA
1 AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
10687112 ACTTACATAACTTACAACTTACATAACTTAC
66 ACTTACATAACTTACAACTTACATAACTTAC
10687143 AACTTACATA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 93 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (115 bp):
AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
Found at i:10687132 original size:16 final size:16
Alignment explanation
Indices: 10687111--10687159 Score: 98
Period size: 16 Copynumber: 3.1 Consensus size: 16
10687101 TATTATACAT
10687111 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10687127 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10687143 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10687159 A
1 A
10687160 TTTGTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:10687168 original size:131 final size:126
Alignment explanation
Indices: 10686995--10687321 Score: 400
Period size: 131 Copynumber: 2.6 Consensus size: 126
10686985 ATATTATACA
*
10686995 TAACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATAAATTACATAACTT
1 TAACTTACATAACTTACAACTTACATAACTTAC-ATTTTTTAATTATTCATAAATTACATAACTT
* *
10687060 ACATTAA-TGC-AATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACATAAC
65 AC-TTAATTGCAAATAAATAAATTACATAACTT-A--AATTAATATTATACATAAATTACATAAC
10687123 T
126 T
10687124 TACAACTTACATAACTTACAACTTACATAACTTACATTTGTTTAATTATTCATAAATTACATAAC
1 T--AACTTACATAACTTACAACTTACATAACTTACATTT-TTTAATTATTCATAAATTACATAAC
* * *
10687189 TTACTTAATTTTCATAATAAATAACTTACATAACTTACATTAATATTATACATAAATTACATAAC
63 TTACTTAA-TTGCA-AATAAATAAATTACATAACTTAAATTAATATTATACATAAATTACATAAC
10687254 T
126 T
* ** *
10687255 TAA-TTA-ATATACATA-AA-TTACATAACTTACA-TTAAT-ATTATACATAAATTACATAACTT
1 TAACTTACATA-ACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTT
*
10687314 AGTTAATT
65 ACTTAATT
10687322 CATATTATAC
Statistics
Matches: 179, Mismatches: 11, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
122 2 0.01
123 27 0.15
124 1 0.01
125 2 0.01
126 14 0.08
127 5 0.03
128 7 0.04
129 3 0.02
130 7 0.04
131 89 0.50
132 2 0.01
133 1 0.01
134 19 0.11
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.40
Consensus pattern (126 bp):
TAACTTACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTTA
CTTAATTGCAAATAAATAAATTACATAACTTAAATTAATATTATACATAAATTACATAACT
Found at i:10687215 original size:25 final size:28
Alignment explanation
Indices: 10687165--10687321 Score: 77
Period size: 31 Copynumber: 5.2 Consensus size: 28
10687155 TTACATTTGT
*
10687165 TTAATTATTCATAAATTACATAACTTAC
1 TTAATTATTCATAAATTAAATAACTTAC
10687193 TTAATT-TTCAT-AA-TAAATAACTTAC
1 TTAATTATTCATAAATTAAATAACTTAC
* * * * *
10687218 ATAACTTACATTAATATTATACATAAATTACATAAC
1 TTAA-TT--ATTCATA--A-A-TTAAATAAC-TTAC
*
10687254 TTAATTAATATACATAAATTACATAACTTAC
1 TTAATT-AT-T-CATAAATTAAATAACTTAC
* * *
10687285 ATTAATATTATACATAAATTACATAACTTAG
1 -TT-A-ATTATTCATAAATTAAATAACTTAC
10687316 TTAATT
1 TTAATT
10687322 CATATTATAC
Statistics
Matches: 99, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
25 14 0.14
26 4 0.04
27 5 0.05
28 9 0.09
29 5 0.05
30 2 0.02
31 21 0.21
32 9 0.09
33 5 0.05
34 6 0.06
35 10 0.10
36 9 0.09
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (28 bp):
TTAATTATTCATAAATTAAATAACTTAC
Found at i:10687341 original size:34 final size:31
Alignment explanation
Indices: 10686841--10687010 Score: 209
Period size: 31 Copynumber: 5.4 Consensus size: 31
10686831 AACTTAGAAC
* *
10686841 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
*
10686872 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
** *
10686903 TTACATAACTT-AATTAATTAAAATACCA-GAA
1 TTACATAACTTAAATTAA-TATTATA-CATAAA
*
10686934 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
*
10686965 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--AATTAATATTATACATAAA
10686999 TTACATAACTTA
1 TTACATAACTTA
10687011 CAACTTACAT
Statistics
Matches: 121, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
30 7 0.06
31 77 0.64
32 8 0.07
33 1 0.01
34 28 0.23
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.38
Consensus pattern (31 bp):
TTACATAACTTAAATTAATATTATACATAAA
Found at i:10687362 original size:16 final size:16
Alignment explanation
Indices: 10687329--10687375 Score: 76
Period size: 16 Copynumber: 2.8 Consensus size: 16
10687319 ATTCATATTA
10687329 TACATAACTTACACAACT
1 TACATAACTT--ACAACT
10687347 TACATAACTTACAACT
1 TACATAACTTACAACT
10687363 TACATAACTTACA
1 TACATAACTTACA
10687376 TTTTTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 19 0.66
18 10 0.34
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.30
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:10687430 original size:25 final size:25
Alignment explanation
Indices: 10687425--10687536 Score: 104
Period size: 25 Copynumber: 4.6 Consensus size: 25
10687415 TTCATAATAA
* *
10687425 ATAACTTACATAACTTACATAATAC
1 ATAACTTACATAATTTTCATAATAC
* * * *
10687450 ATAACTTATATGACTTACAT-A-AC
1 ATAACTTACATAATTTTCATAATAC
* *
10687473 -TTACATAGCATAATTTTCATAATAC
1 ATAACTTA-CATAATTTTCATAATAC
* *
10687498 ACAACTTACATAATTTTCATAATAA
1 ATAACTTACATAATTTTCATAATAC
10687523 ATAACTTACATAAT
1 ATAACTTACATAAT
10687537 ACATAACTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
22 5 0.07
23 10 0.14
24 2 0.03
25 49 0.70
26 4 0.06
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAACTTACATAATTTTCATAATAC
Found at i:10687450 original size:16 final size:16
Alignment explanation
Indices: 10687431--10687550 Score: 96
Period size: 16 Copynumber: 7.9 Consensus size: 16
10687421 ATAAATAACT
10687431 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
10687447 TACATAACTTATATGACT
1 TACATAACTTACAT-A-A
10687465 TACATAACTTACAT-A
1 TACATAACTTACATAA
* * *
10687480 -GCATAATTTTCATAA
1 TACATAACTTACATAA
*
10687495 TACACAACTTACATAA
1 TACATAACTTACATAA
10687511 T---T---TT-CATAA
1 TACATAACTTACATAA
*
10687520 TAAATAACTTACATAA
1 TACATAACTTACATAA
10687536 TACATAACTTACATA
1 TACATAACTTACATA
10687551 GCTTAATTAT
Statistics
Matches: 80, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 10 0.12
15 3 0.04
16 44 0.55
17 1 0.01
18 13 0.16
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:10693087 original size:66 final size:65
Alignment explanation
Indices: 10692980--10693162 Score: 224
Period size: 66 Copynumber: 2.8 Consensus size: 65
10692970 GAGAAAATTA
* * *
10692980 CACAACTTAAAGCAGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
10693044 G
65 G
* * *
10693045 CTACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTTCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
10693110 G
65 G
* * * * *
10693111 CAGCAGCTTAAAGCAGATGCGGCAGCAAGAGAAGCAGAGGTGGCAACAAAAG
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGT-TCAACAAAAG
10693163 AAGTACAGGC
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.02
66 87 0.86
67 12 0.12
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.14
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:10693155 original size:21 final size:21
Alignment explanation
Indices: 10693121--10693192 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
10693111 CAGCAGCTTA
* *
10693121 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGTGGCAGCAAGAG
* *
10693142 AAGCAGAGGTGGCAACAAAAG
1 AAGCAGAGGTGGCAGCAAGAG
* * * *
10693163 AAGTACAGGCT-GCAGCGAGGG
1 AAGCAGAGG-TGGCAGCAAGAG
10693184 AAGCAGAGG
1 AAGCAGAGG
10693193 CTATAGTGAG
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
21 37 0.97
22 1 0.03
ACGTcount: A:0.39, C:0.17, G:0.39, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGTGGCAGCAAGAG
Found at i:10693191 original size:42 final size:42
Alignment explanation
Indices: 10693132--10693233 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
10693122 AGCAGATGCG
* * *
10693132 GCAGCAAGAGAAGCAGAGG-TGGCAACAAAAGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCT-ACAACAAAAGAAGTACAGGCT
* *** **
10693174 GCAGCGAGGGAAGCAGAGGCTATAGTGAGGGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCTACAACAAAAGAAGTACAGGCT
10693216 GCAGCGAGGGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
10693234 CAGCGTCAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 49 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.40, T:0.08
Consensus pattern (42 bp):
GCAGCGAGGGAAGCAGAGGCTACAACAAAAGAAGTACAGGCT
Found at i:10693193 original size:21 final size:21
Alignment explanation
Indices: 10693169--10693233 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
10693159 AAAGAAGTAC
10693169 AGGCTGCAGCGAGGGAAGCAG
1 AGGCTGCAGCGAGGGAAGCAG
** * * *
10693190 AGGCTATAGTGAGGGAAGTAC
1 AGGCTGCAGCGAGGGAAGCAG
10693211 AGGCTGCAGCGAGGGAAGCAG
1 AGGCTGCAGCGAGGGAAGCAG
10693232 AG
1 AG
10693234 CAGCGTCAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.31, C:0.15, G:0.45, T:0.09
Consensus pattern (21 bp):
AGGCTGCAGCGAGGGAAGCAG
Found at i:10693595 original size:43 final size:43
Alignment explanation
Indices: 10693541--10693746 Score: 189
Period size: 43 Copynumber: 4.8 Consensus size: 43
10693531 ATCTGCCAAA
* * * *
10693541 TTTAGTGGCGTTTTTGGTAAAAGCGCCGCTAAATATGAGGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATATCAGGGTC
* ** * * *
10693584 TTTAACGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATATCAGGGTC
* *
10693627 TTTAGCAGCGTTTGTGGGGAAAAGCGCCGCTAGAGT-TCAGGGTC
1 TTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTA-AATATCAGGGTC
* * * ** *
10693671 TTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATATCAGGGTC
* * * *
10693714 TTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
10693747 GACCCTGACC
Statistics
Matches: 130, Mismatches: 30, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 95 0.73
44 33 0.25
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATATCAGGGTC
Found at i:10693669 original size:87 final size:87
Alignment explanation
Indices: 10693559--10693746 Score: 218
Period size: 87 Copynumber: 2.2 Consensus size: 87
10693549 CGTTTTTGGT
* *
10693559 AAAAGCGCCGCTAAATATGAGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATG
1 AAAAGCGCCGCTAAATATCAGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCACTAAAGACCATG
* *
10693624 GTCTTTAGCAGCGTTTGTGGGG
66 ATCTTTAGCAGCGCTTGTGGGG
* ** ** * *
10693646 AAAAGCGCCGCTAGAGT-TCAGGGTCTTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCT
1 AAAAGCGCCGCTA-AATATCAGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCACTAAAGACCAT
* * *
10693710 GATCTTTAGCGGCGCTTGT-CGC
65 GATCTTTAGCAGCGCTTGTGGGG
*
10693732 AAAAACGCCGCTAAA
1 AAAAGCGCCGCTAAA
10693747 GACCCTGACC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
85 1 0.01
86 13 0.15
87 68 0.81
88 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (87 bp):
AAAAGCGCCGCTAAATATCAGGGTCTTTAACGGCGTTTGTGAAAAAAGCGCCACTAAAGACCATG
ATCTTTAGCAGCGCTTGTGGGG
Found at i:10693747 original size:43 final size:43
Alignment explanation
Indices: 10693669--10693789 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
10693659 GAGTTCAGGG
* * * *
10693669 TCTTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTAGCAAAAGCGCCGCTAAAGACCCTGA
* *
10693712 TCTTTAGCGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTAGCAAAAGCGCCGCTAAAGACCCTGA
* *
10693755 CCTTTAGCGGCGCTTCTAGC-AAAGCGCCGCTAAAG
1 TCTTTAGCGGCGCTTGTAGCAAAAGCGCCGCTAAAG
10693790 GTATTAGTCT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 14 0.20
43 55 0.80
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTGTAGCAAAAGCGCCGCTAAAGACCCTGA
Found at i:10693902 original size:22 final size:21
Alignment explanation
Indices: 10693861--10693903 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10693851 GTTTATTTCT
* *
10693861 AAAAACGCCGCTATAGGCCTA
1 AAAAACGCCGCTAAAAGCCTA
10693882 AAAAAGCGCCGCTAAAAGCCTA
1 AAAAA-CGCCGCTAAAAGCCTA
10693904 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.42, C:0.28, G:0.19, T:0.12
Consensus pattern (21 bp):
AAAAACGCCGCTAAAAGCCTA
Found at i:10696772 original size:4 final size:4
Alignment explanation
Indices: 10696763--10696792 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
10696753 TTTATTTTCG
10696763 AAAT AAAT AAAT AAAT AAAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
10696793 AACTTATCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:10697840 original size:5 final size:5
Alignment explanation
Indices: 10697830--10697873 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
10697820 GGACTTGGTT
10697830 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
10697874 TGTTATCTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:10701770 original size:23 final size:23
Alignment explanation
Indices: 10701744--10701795 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
10701734 GTGTGTATGT
*
10701744 ACAAATATATAATGAATCTTGTG
1 ACAAATATATAATGAAGCTTGTG
10701767 ACAAATATATAATGAAGCTTGTG
1 ACAAATATATAATGAAGCTTGTG
10701790 ATCAAA
1 A-CAAA
10701796 AAGTATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (23 bp):
ACAAATATATAATGAAGCTTGTG
Found at i:10701829 original size:3 final size:3
Alignment explanation
Indices: 10701821--10701983 Score: 71
Period size: 3 Copynumber: 53.7 Consensus size: 3
10701811 CATAGTGATC
* * *
10701821 ATA ATA ATA ACTA AGA ATA ATA ATAA ATA ATC AT- ATA TTA ATA A-A
1 ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
** * * * * *
10701866 CGA ATA ATA GTA GTAA ATAA ATAA ATA AGA GTA ATA TTA ATA ATA ATA
1 ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * * **
10701914 ATG GTA GTA AAA ATA CTA ATA GTA ATA ACA GTA ATA ATA GTA ACG A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10701961 ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
10701984 TTGAAAATAT
Statistics
Matches: 119, Mismatches: 35, Indels: 12
0.72 0.21 0.07
Matches are distributed among these distances:
2 4 0.03
3 99 0.83
4 16 0.13
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10702033 original size:15 final size:16
Alignment explanation
Indices: 10702013--10702059 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
10702003 GAAAAGCAAG
10702013 AATTAAATAATA-AAT
1 AATTAAATAATACAAT
*
10702028 AATTAAATGATACAAT
1 AATTAAATAATACAAT
*
10702044 AAGATAAATATATACA
1 AA-TTAAATA-ATACA
10702060 TATACATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 11 0.42
16 5 0.19
17 5 0.19
18 5 0.19
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (16 bp):
AATTAAATAATACAAT
Found at i:10702084 original size:7 final size:7
Alignment explanation
Indices: 10702072--10702097 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10702062 TACATATATA
10702072 TAAAAAC
1 TAAAAAC
10702079 TAAAAAC
1 TAAAAAC
10702086 TAAAAAC
1 TAAAAAC
10702093 TAAAA
1 TAAAA
10702098 TATAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAC
Found at i:10702103 original size:14 final size:14
Alignment explanation
Indices: 10702069--10702104 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
10702059 ATATACATAT
10702069 ATATAAAAACTAAA
1 ATATAAAAACTAAA
10702083 A-ACTAAAAACTAAA
1 ATA-TAAAAACTAAA
10702097 ATATAAAA
1 ATATAAAA
10702105 TATAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.05
14 18 0.90
15 1 0.05
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (14 bp):
ATATAAAAACTAAA
Found at i:10709512 original size:23 final size:23
Alignment explanation
Indices: 10709481--10709527 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10709471 ATATATATTG
*
10709481 TTAAATTTTTTTAATGTTAAATT
1 TTAAATTTTTATAATGTTAAATT
* * *
10709504 TTAATTTTTTATAATTTTATATT
1 TTAAATTTTTATAATGTTAAATT
10709527 T
1 T
10709528 ATCTTTACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTAAATTTTTATAATGTTAAATT
Found at i:10711016 original size:12 final size:12
Alignment explanation
Indices: 10710993--10711018 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10710983 AAATAGATAA
10710993 ATGAATAAATAT
1 ATGAATAAATAT
10711005 ATGAATAAATAT
1 ATGAATAAATAT
10711017 AT
1 AT
10711019 AAAAAGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
ATGAATAAATAT
Found at i:10712656 original size:3 final size:3
Alignment explanation
Indices: 10712650--10712741 Score: 166
Period size: 3 Copynumber: 30.7 Consensus size: 3
10712640 ACTTTTACCA
10712650 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
10712698 TAT TAT TAT TAT TAT GAT TGT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10712742 AGGAATTTAC
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 85 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:10715138 original size:14 final size:14
Alignment explanation
Indices: 10715119--10715145 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10715109 AAATAAAAAT
10715119 AATTAATAATATTC
1 AATTAATAATATTC
10715133 AATTAATAATATT
1 AATTAATAATATT
10715146 ATCTAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTAATAATATTC
Found at i:10720025 original size:19 final size:19
Alignment explanation
Indices: 10720001--10720038 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10719991 TTTCCTTTGT
10720001 TTCTTTTTTTCTCTGAAGC
1 TTCTTTTTTTCTCTGAAGC
10720020 TTCTTTTTTTCTCTGAAGC
1 TTCTTTTTTTCTCTGAAGC
10720039 CACCCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.58
Consensus pattern (19 bp):
TTCTTTTTTTCTCTGAAGC
Found at i:10721213 original size:94 final size:95
Alignment explanation
Indices: 10721096--10721551 Score: 464
Period size: 94 Copynumber: 4.9 Consensus size: 95
10721086 TGCTCCATTG
* * * * *
10721096 CAACTTCAAGGAAATAAGATTCGTTGTTGTAATTTCAATCCGACCCACTGTAACTTCAAGGGTAT
1 CAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
10721161 AGGATTTGTAG-TCTC-ATCTTGCTC-ACTA
66 AGGATTTGTAGCT-TCAATCTTGCTCTACTA
* * *
10721189 CAACTTCAGGGAGATAAAGATTCGTTATGGTAACTTCAATCTGACCCACTGCAACTTCAGGGGTA
1 CAACTTCAGGGAGAT-AAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTA
* * * **
10721254 TAAGATTTGTAACTTCAATC-TACT-TCACCG
65 TAGGATTTGTAGCTTCAATCTTGCTCT-ACTA
* * * * *
10721284 CAACTTCAGAGAGATAAGATTCGCTATGGT-ATTTCAATCCGACACACAGCAACTTCAAAGGTAT
1 CAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
*
10721348 AGGATTTGTAGCTTCAAT-TTGCTCTACTG
66 AGGATTTGTAGCTTCAATCTTGCTCTACTA
* * ** * * *
10721377 CAACTTTAGGGAGATAAGATTCATTATGGTAGA-TTCAATTTGACCCACTACAATTTCAGGGGTA
1 CAACTTCAGGGAGATAAGATTCGTTATGGTA-ATTTCAATCCGACCCACTGCAACTTCAAGGGTA
*
10721441 TAGGATCTGTAGCTTC-ATCTTGCTCTACTA
65 TAGGATTTGTAGCTTCAATCTTGCTCTACTA
* * ** * * * * *
10721471 TAACTTCAGAGAGATAAGATTCACTATGGTGGA-TGCAATCTGACCCACTGCAACTTTAAGGGTG
1 CAACTTCAGGGAGATAAGATTCGTTATGGT-AATTTCAATCCGACCCACTGCAACTTCAAGGGTA
*
10721535 TAAGATTTGTAGCTTCA
65 TAGGATTTGTAGCTTCA
10721552 TTGATCTGTT
Statistics
Matches: 298, Mismatches: 53, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
93 91 0.31
94 186 0.62
95 21 0.07
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (95 bp):
CAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
AGGATTTGTAGCTTCAATCTTGCTCTACTA
Found at i:10721301 original size:44 final size:44
Alignment explanation
Indices: 10721218--10721304 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
10721208 ATTCGTTATG
* *
10721218 GTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAAGATTT
1 GTAACTTCAATCTGACCCACCGCAACTTCAGGAGTATAAGATTT
*
10721262 GTAACTTCAATCT-ACTTCACCGCAACTTCAGAGAG-ATAAGATT
1 GTAACTTCAATCTGAC-CCACCGCAACTTCAG-GAGTATAAGATT
10721305 CGCTATGGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 2 0.05
44 34 0.89
45 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (44 bp):
GTAACTTCAATCTGACCCACCGCAACTTCAGGAGTATAAGATTT
Found at i:10721423 original size:187 final size:189
Alignment explanation
Indices: 10721095--10721551 Score: 529
Period size: 187 Copynumber: 2.4 Consensus size: 189
10721085 TTGCTCCATT
* * * * * *
10721095 GCAACTTCA-AGGAAATAAGATTCGTTGTTGTAATTTCAATCCGACCCACTGTAACTTCAAGGGT
1 GCAACTTCAGA-GAGATAAGATTCGCTATGGTGATTTCAATCCGACCCACTGCAACTTCAAGGGT
*
10721159 ATAGGATTTGTAG-TCTC-ATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCGTTATGGTAA
65 ATAGGATTTGTAGCT-TCAATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCATTATGGTAA
* *
10721222 CTTCAATCTGACCCACTGCAACTTCAGGGGTATAAGATTTGTAACTTCAATC-TACT-TCACC
129 CTTCAATCTGACCCACTACAACTTCAGGGGTATAAGATCTGTAACTTC-ATCTTACTCT-ACC
* * *
10721283 GCAACTTCAGAGAGATAAGATTCGCTATGGT-ATTTCAATCCGACACACAGCAACTTCAAAGGTA
1 GCAACTTCAGAGAGATAAGATTCGCTATGGTGATTTCAATCCGACCCACTGCAACTTCAAGGGTA
* *
10721347 TAGGATTTGTAGCTTCAAT-TTGCTCTACTGCAACTTTAGGGAGAT-AAGATTCATTATGGTAGA
66 TAGGATTTGTAGCTTCAATCTTGCTC-ACTACAACTTCAGGGAGATAAAGATTCATTATGGTA-A
* * * * * *
10721410 -TTCAATTTGACCCACTACAATTTCAGGGGTATAGGATCTGTAGCTTCATCTTGCTCTACT
129 CTTCAATCTGACCCACTACAACTTCAGGGGTATAAGATCTGTAACTTCATCTTACTCTACC
** * * * *
10721470 ATAACTTCAGAGAGATAAGATTCACTATGGTGGA-TGCAATCTGACCCACTGCAACTTTAAGGGT
1 GCAACTTCAGAGAGATAAGATTCGCTATGGT-GATTTCAATCCGACCCACTGCAACTTCAAGGGT
* *
10721534 GTAAGATTTGTAGCTTCA
65 ATAGGATTTGTAGCTTCA
10721552 TTGATCTGTT
Statistics
Matches: 230, Mismatches: 30, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
186 3 0.01
187 138 0.60
188 87 0.38
189 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (189 bp):
GCAACTTCAGAGAGATAAGATTCGCTATGGTGATTTCAATCCGACCCACTGCAACTTCAAGGGTA
TAGGATTTGTAGCTTCAATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCATTATGGTAACT
TCAATCTGACCCACTACAACTTCAGGGGTATAAGATCTGTAACTTCATCTTACTCTACC
Found at i:10738340 original size:50 final size:49
Alignment explanation
Indices: 10738234--10738426 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 49
10738224 GGGAATAATA
*
10738234 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGG---CATCGAG---ATGAGAGG
* *
10738290 TCCCATGTAAGACCATGTCTGGTACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGG-ACATGGCATTGGCATCGAGATGAGAGG
** * * **
10738340 TCCCCCGTAAGACCATGTCTAGGACATGGCATAGGCATCGATATGAGAAC
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCATCGAGATGAGAGG
* * *
10738390 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA
10738427 GTACAGAAAA
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
50 77 0.66
51 2 0.02
53 5 0.04
55 2 0.02
56 31 0.26
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGACATGGCATTGGCATCGAGATGAGAGG
Found at i:10738425 original size:100 final size:104
Alignment explanation
Indices: 10738240--10738426 Score: 238
Period size: 100 Copynumber: 1.8 Consensus size: 104
10738230 AATATCCCAT
* * **
10738240 GTAAGACCATGTCTGGGACATGGCATTGGTATCATTGAGATTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTAGGACATGGCATAGG--TCATTGAGATTATGAGAACTCCCATGTAAGACCA
* * * *
10738305 TGTCTGGTACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
64 TATCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCCC
*
10738346 GTAAGACCATGTCTAGGACATGGCATAGG-CA-T-CGA-TATGAGAACTCCCATGTAAGACCATA
1 GTAAGACCATGTCTAGGACATGGCATAGGTCATTGAGATTATGAGAACTCCCATGTAAGACCATA
*
10738407 TCTGGGATATGACATTGGCA
66 TCTGGGACATGACATTGGCA
10738427 GTACAGAAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
100 39 0.55
101 2 0.03
102 1 0.01
103 2 0.03
106 27 0.38
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (104 bp):
GTAAGACCATGTCTAGGACATGGCATAGGTCATTGAGATTATGAGAACTCCCATGTAAGACCATA
TCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCCC
Found at i:10738692 original size:12 final size:12
Alignment explanation
Indices: 10738675--10738713 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10738665 ATGAGTTATT
10738675 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
10738687 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
10738699 TAAGTGAGTAAG
1 TAAGTAAGCAAG
10738711 TAA
1 TAA
10738714 AGAAGTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:10738701 original size:20 final size:20
Alignment explanation
Indices: 10738676--10738719 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
10738666 TGAGTTATTT
10738676 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
** *
10738696 AAGTAAGTGAGTAAGTAAAG
1 AAGTAAGCAAGTAAGTAAAC
10738716 AAGT
1 AAGT
10738720 GAGTAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.25, T:0.18
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:10740334 original size:31 final size:32
Alignment explanation
Indices: 10740263--10740335 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
10740253 GTGTGGGTGT
*
10740263 GGCGTGTGGGCCATACGAGCTAGGCCAAATTA
1 GGCGTGTGGGCCACACGAGCTAGGCCAAATTA
* * *
10740295 GGCATGTGGGCCCACACGAGC-ATGCCACA-TA
1 GGCGTGTGGG-CCACACGAGCTAGGCCAAATTA
10740326 GGCGTGTGGG
1 GGCGTGTGGG
10740336 TTTTAGGCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 11 0.31
32 15 0.43
33 9 0.26
ACGTcount: A:0.22, C:0.25, G:0.37, T:0.16
Consensus pattern (32 bp):
GGCGTGTGGGCCACACGAGCTAGGCCAAATTA
Found at i:10741618 original size:382 final size:382
Alignment explanation
Indices: 10740912--10741676 Score: 1196
Period size: 382 Copynumber: 2.0 Consensus size: 382
10740902 TGTTCTGTTC
* **
10740912 ATGTAATCCACAGACTTAGGCGGATCAGTGTGACGAAGCCTTGCGGTAACCACGAGTTCATAAAC
1 ATGTAATCCACAGACTTAGGCGGATCAGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
*
10740977 TATTAAAAATCGTGGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
66 TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
* * * *
10741042 TTCCAGATAGTTCGGATTTTGGGATTTATGTTTTAACATTTTATCTGCTACGGGTATTCAAAACG
131 CTCCAGATAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAACG
* *
10741107 TGGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATGCGATTTCCAAAAATAACATTTTCTA
196 TAGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTTCTA
* * * *
10741172 TGACTTTCGCTATAAATTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGATAAATTGAT
261 TGACTTCCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAATTGAT
*
10741237 ATAAATAATTATGGGTTACAAAATTTGGATGGTTTACCGAACAACTTTACAAGTTTT
326 ATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
* *
10741294 ATGTAATCCACAGACTTAGGCGGATCGGTGTAACGAAGCCTCACGGTGACCACGAGTTCATAAAC
1 ATGTAATCCACAGACTTAGGCGGATCAGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
* * *
10741359 TATTAAATATCGTAGATTTTATTTTTGTTAAGGTTTATTT-TTGGGATTTTTGGAATAATTGGAC
66 TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTT-GGATTTTTGGAATAATTAGAC
* *
10741423 TCTCCGGACT-GTTTGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAA
130 TCTCCAGA-TAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAA
* *
10741487 CGTAGTTTTTA-TAAAACAAAGGTTTTT-TAAAAATATGAATACGATTTCCAAAAATAACATTTT
194 CGTAGCTTTTACTAAAACAAA-GTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTT
* *
10741550 CTATGACTTCCACTGTAAACTACGTTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAAAT
258 CTATGACTTCCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCG-AAAAAT
* * * *
10741615 TGATATACATAATTATGGGTTTCAAAAATTGGATGGTTTATCGAACAACTTTATAAGTTTT
322 TGATATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
10741676 A
1 A
10741677 CTGAAATAAC
Statistics
Matches: 349, Mismatches: 30, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
381 98 0.28
382 250 0.72
383 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (382 bp):
ATGTAATCCACAGACTTAGGCGGATCAGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
CTCCAGATAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAACG
TAGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTTCTA
TGACTTCCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAATTGAT
ATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
Found at i:10746794 original size:2 final size:2
Alignment explanation
Indices: 10746787--10746817 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10746777 AGTGTTCTAG
10746787 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
10746818 AGGTCTTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:10761400 original size:3 final size:3
Alignment explanation
Indices: 10761386--10761436 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
10761376 ACACTAGTAC
* * * * *
10761386 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10761433 ATA A
1 ATA A
10761437 GGATATTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10763007 original size:45 final size:45
Alignment explanation
Indices: 10762958--10763107 Score: 124
Period size: 45 Copynumber: 3.2 Consensus size: 45
10762948 TCCGATCTAT
10762958 TCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTAC
1 TCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTAC
* * * * * * *
10763003 TCCACTGT--AGTCACAGGGAGGTAAAATCTGTCATCTTTGATCTTCAATCTAT
1 TCCACTGTCAAAT-ACAGGGAGAT-AGA---GTTATC----AGCTTCAATGTAC
* *
10763055 TCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTAC
1 TCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTAC
10763100 TCCACTGT
1 TCCACTGT
10763108 AGTCAGGGAG
Statistics
Matches: 77, Mismatches: 17, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
43 2 0.03
44 9 0.12
45 26 0.34
48 5 0.06
49 5 0.06
52 19 0.25
53 9 0.12
54 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (45 bp):
TCCACTGTCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTAC
Found at i:10763312 original size:132 final size:132
Alignment explanation
Indices: 10763178--10764091 Score: 1535
Period size: 132 Copynumber: 6.9 Consensus size: 132
10763168 GATTTGCAAT
* * *
10763178 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * * *
10763243 GTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
*
10763308 AT
131 AC
*
10763310 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
10763375 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
10763440 AC
131 AC
10763442 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
10763507 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
10763572 AC
131 AC
10763574 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* ** * *
10763639 ATAT-GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACCGGACCTGTT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
10763703 AC
131 AC
* * *
10763705 C-TCGATCTACTTCACGCCAATACATGAAGATAAGATCTACTTTCTGCGATCTGCTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
*
10763769 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCTTACCAATATAGGAAGATAGGATCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
10763834 AC
131 AC
* * * *
10763836 CTTCGATCTTCTTTACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTGCTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * *
10763901 ATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCTTACCAATATAGGAAGATAGGATCTACT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
10763966 AC
131 AC
* * *
10763968 CTTCGATCTTCTTCATGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * *
10764033 ATATGGGAAGACAAGATTTGCATCTTTGATCTACTTCCTACCAATATAGGAAGATAGGA
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGA
10764092 CCTATTTACG
Statistics
Matches: 741, Mismatches: 39, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
130 64 0.09
131 115 0.16
132 562 0.76
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCT
AC
Found at i:10763908 original size:394 final size:396
Alignment explanation
Indices: 10763178--10764094 Score: 1568
Period size: 394 Copynumber: 2.3 Consensus size: 396
10763168 GATTTGCAAT
* * *
10763178 CTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* *
10763243 GTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCT
* * *
10763308 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTGCCAC
131 ATCCTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCAC
10763373 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
196 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
10763438 CTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
261 CTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
10763503 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
326 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
*
10763568 TGCTAC
391 TACTAC
10763574 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * *
10763639 ATAT-GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACCGGACCTGTT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCT
* *
10763703 A-CCTCGATCTACTTCACGCCAATACATGAAGATAAGATCTACTTTCTGCGATCTGCTTCGCCAC
131 ATCCTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCAC
*
10763767 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCTTACCAATATAGGAAGATAGGATCTG
196 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
* * * *
10763832 CTACCTTCGATCTTCTTTACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTGCTTCGCC
261 CTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
* *
10763897 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCATTTCTTACCAATATAGGAAGATAGGATC
326 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
10763962 TACTAC
391 TACTAC
* * *
10763968 CTTCGATCTTCTTCATGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTCGCCACCA
1 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * * *
10764033 ATATGGGAAGACAAGATTTGCATCTTTGATCTACTTCCTACCAATATAGGAAGATAGGACCT
66 ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCT
10764095 ATTTACGCCT
Statistics
Matches: 490, Mismatches: 30, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
394 317 0.65
395 108 0.22
396 65 0.13
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (396 bp):
CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
ATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCT
ATCCTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCGCCAC
CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
CTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
TACTAC
Found at i:10776971 original size:21 final size:22
Alignment explanation
Indices: 10776946--10776988 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10776936 ACGGCGAAAT
10776946 ATACACAA-AAAAACAA-TCAAA
1 ATACACAATAAAAA-AATTCAAA
*
10776967 ATACAGAATAAAAAAATTCAAA
1 ATACACAATAAAAAAATTCAAA
10776989 GGTGATCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
ATACACAATAAAAAAATTCAAA
Found at i:10780820 original size:19 final size:19
Alignment explanation
Indices: 10780796--10780834 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10780786 TAAGGCCGTA
* *
10780796 TATGTAAATATATTTGTTT
1 TATGTAAAGAGATTTGTTT
10780815 TATGTAAAGAGATTTGTTT
1 TATGTAAAGAGATTTGTTT
10780834 T
1 T
10780835 CTATTAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (19 bp):
TATGTAAAGAGATTTGTTT
Found at i:10787469 original size:19 final size:19
Alignment explanation
Indices: 10787445--10787482 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10787435 TCATCATAAT
10787445 TCATAAACTTTTAATACTA
1 TCATAAACTTTTAATACTA
10787464 TCATAAACTTTTAATACTA
1 TCATAAACTTTTAATACTA
10787483 ACATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (19 bp):
TCATAAACTTTTAATACTA
Found at i:10788294 original size:23 final size:24
Alignment explanation
Indices: 10788250--10788295 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
10788240 TTTCTCACAT
* **
10788250 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
10788274 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
10788296 AAATTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:10788450 original size:3 final size:3
Alignment explanation
Indices: 10788442--10788473 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10788432 TCACTCATCT
10788442 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10788474 CTTACCTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10788901 original size:16 final size:18
Alignment explanation
Indices: 10788880--10788913 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
10788870 CTTATAGTTT
10788880 CTTTTA-CAATT-TAATC
1 CTTTTATCAATTCTAATC
10788896 CTTTTATCAATTCTAATC
1 CTTTTATCAATTCTAATC
10788914 AAAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTTTATCAATTCTAATC
Found at i:10789233 original size:15 final size:14
Alignment explanation
Indices: 10789209--10789245 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
10789199 ATTCATTTGC
10789209 TTTCTTTTATTTTA
1 TTTCTTTTATTTTA
10789223 TTTCATTTTATTTTA
1 TTTC-TTTTATTTTA
10789238 TTTACTTT
1 TTT-CTTT
10789246 ATGTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 16 0.76
16 1 0.05
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTCTTTTATTTTA
Found at i:10789571 original size:21 final size:21
Alignment explanation
Indices: 10789547--10789589 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10789537 AATAATAACT
10789547 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
10789568 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
10789589 A
1 A
10789590 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:10789690 original size:3 final size:3
Alignment explanation
Indices: 10789682--10789744 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
10789672 TTACTTTATT
** **
10789682 TAA TAA TAA TAA TAA TAA T-A TAA -AA CCA TAA TAA TGGT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
*
10789726 TTA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TA
10789745 TTTATGTATA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
2 6 0.13
3 40 0.85
4 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10791905 original size:44 final size:44
Alignment explanation
Indices: 10791842--10792535 Score: 595
Period size: 44 Copynumber: 15.6 Consensus size: 44
10791832 TATCATGGAG
* * **
10791842 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
10791886 AATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * *
10791931 AATCTTATCTCTCTGAAGTTGCCA-TAGAGCAGATTAAAGATACA
1 AATCTTATCTCCCTGAAGTTG-CAGTGGAGCAGATTGAAGATACA
* * * * *
10791975 AACCTTATCTCTCTGAAATTGCAGTGAAACAGATTGAA-ATGACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACA
* ** * * *
10792019 ATTCTTATCTCCCTGGGGTTGCAGTGGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
10792063 AATCTTATTTCCCTGAAGCTGCAGTGGAACAGATTAAAGCTACAAATTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC------A
* * * * * * *
10792113 AATCTTATCTCCATAAAGTTACAGTAGAGTAGATTGAATATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
10792157 AGTCTCATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
10792201 AACCTTATCTCCCTGAAGTTGCAGTAGAGCTGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
10792245 AATCTCATCTCCCTGAAGTTGTAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * * *
10792289 AGTCTCATCTTCTTAAAGTTGCAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
10792333 AACCTTAGCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
10792377 AATCTCATCTCCCTGAAGTTGTAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
10792421 AGTCTCATCTCCCCGAAGTTGCAGTGGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
10792465 AGTCTAATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCA-ACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-ATACA
* *
10792509 AATCCTATAC-CTCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
10792536 GTTAGAATGA
Statistics
Matches: 516, Mismatches: 121, Indels: 26
0.78 0.18 0.04
Matches are distributed among these distances:
43 4 0.01
44 439 0.85
45 38 0.07
46 2 0.00
50 33 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:10792314 original size:132 final size:132
Alignment explanation
Indices: 10791842--10792534 Score: 685
Period size: 132 Copynumber: 5.2 Consensus size: 132
10791832 TATCATGGAG
* * * * * ** * * * * *
10791842 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACAAATCTTATCTCCCTAAAGTTA
1 AATCTCATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCCTGAAGTTG
* * * * * *
10791907 CAATGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCCA-TAGAGCAGATTAAAGA
66 CAGTGGAGCAGATTAAAGCTA-CAAATCTTATCTCCCTGAAGTTG-CAGTAGAGCAGATTGAAGC
10791971 TACA
129 TACA
* * * * ** * * * **
10791975 AACCTTATCTCTCTGAAATTGCAGTGAAACAGATTGAA-ATGACAATTCTTATCTCCCTGGGGTT
1 AATCTCATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGAT-ACGAGTCTCATCTCCCTGAAGTT
* * * * * *
10792039 GCAGTGGAGTAGATTAAAGCTACAAATCTTATTTCCCTGAAGCTGCAGTGGAACAGATTAAAGCT
65 GCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
10792104 ACAAATTTA
130 AC------A
* * * * * *
10792113 AATCTTATCTCCATAAAGTTACAGT-AGAGTAGATTGAATATACGAGTCTCATCTCCTTGAAGTT
1 AATCTCATCTCCCTGAAGTTGCAGTGA-AGTAGATTGAAGATACGAGTCTCATCTCCCTGAAGTT
* * * *
10792177 GCAGTGGAGCAGATTAAAGTTACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCTGATTGAAGTT
65 GCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCT
10792242 ACA
130 ACA
* * * *
10792245 AATCTCATCTCCCTGAAGTTGTAGTGAAGTAGATTGAAGATACGAGTCTCATCTTCTTAAAGTTG
1 AATCTCATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCCTGAAGTTG
* * * * *
10792310 CAGTGGAGCAGATTAAAGTTACAAACCTTAGCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGTTA
66 CAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTA
10792375 CA
131 CA
* *
10792377 AATCTCATCTCCCTGAAGTTGTAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCCCGAAGTTG
1 AATCTCATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCCTGAAGTTG
* * * * *
10792442 CAGTGGAGCAGATTGAAGCTACAAGTCTAATCTCCCTGAAGTTACAGTAGAGCAGATTGAAGCAA
66 CAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTA
10792507 CA
131 CA
*
10792509 AATC-CTATAC-CTCTGAAGTTGCAGTG
1 AATCTC-AT-CTCCCTGAAGTTGCAGTG
10792535 GGTTAGAATG
Statistics
Matches: 472, Mismatches: 75, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
131 3 0.01
132 294 0.62
133 69 0.15
137 1 0.00
138 103 0.22
139 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (132 bp):
AATCTCATCTCCCTGAAGTTGCAGTGAAGTAGATTGAAGATACGAGTCTCATCTCCCTGAAGTTG
CAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGCTA
CA
Found at i:10794242 original size:15 final size:16
Alignment explanation
Indices: 10794210--10794243 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
10794200 TATTTATTCA
10794210 TTTATTTATTACTTTT
1 TTTATTTATTACTTTT
10794226 TTTATTT-TTA-TTTT
1 TTTATTTATTACTTTT
10794240 TTTA
1 TTTA
10794244 CATATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 3 0.17
16 7 0.39
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTATTACTTTT
Found at i:10799208 original size:35 final size:35
Alignment explanation
Indices: 10799167--10799238 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
10799157 CTATTAAATA
*
10799167 ATTTAATTTTTTGCTAAATCCGTTAAGAGAGAATG
1 ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
* *
10799202 ATTTAATTTTTTGCTAACTCCATTAAGAGATAATG
1 ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
10799237 AT
1 AT
10799239 GTGGCATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (35 bp):
ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
Found at i:10802167 original size:15 final size:14
Alignment explanation
Indices: 10802133--10802172 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
10802123 TCAATTCTAC
*
10802133 ACTTAATTTTTAAT
1 ACTTATTTTTTAAT
10802147 ACTTATTTTTCTAAT
1 ACTTATTTTT-TAAT
*
10802162 ATTTATTTTTT
1 ACTTATTTTTT
10802173 CAGCATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (14 bp):
ACTTATTTTTTAAT
Found at i:10802465 original size:2 final size:2
Alignment explanation
Indices: 10802458--10802483 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10802448 CTGAGAGCCC
10802458 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10802484 TGCATTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10803960 original size:21 final size:18
Alignment explanation
Indices: 10803919--10803962 Score: 52
Period size: 21 Copynumber: 2.3 Consensus size: 18
10803909 AAAAAAAGAG
10803919 TAAATGATAATAAATAGA
1 TAAATGATAATAAATAGA
*
10803937 TAAATGAATAATCCAAATATA
1 TAAATG-ATAAT--AAATAGA
10803958 TAAAT
1 TAAAT
10803963 ATATATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 5 0.23
21 11 0.50
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
TAAATGATAATAAATAGA
Found at i:10805669 original size:44 final size:44
Alignment explanation
Indices: 10805594--10806582 Score: 673
Period size: 44 Copynumber: 21.9 Consensus size: 44
10805584 TAGTAGATTT
* * **
10805594 AATCTGAC-CCACTGCAACTTCAAAGG-TATAAGATTTGTCGCTTC
1 AATCTG-CTCCACTGCAACTTC-AGGGAGATAAGATTTGTATCTTC
* * *** *
10805638 AATCTACTTCACTGCAACTTCAGGGAGATAAGGCCTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
** * *
10805682 AATCTGCTCCACTGCAACTTCAGATAGATAAGCTTCAT-TACCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTATCTTC
* *
10805727 AATCTGCTCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * *
10805771 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATAACTCGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T---T-GTATCTTC
* * * * *
10805822 AATCTGTTCCACTGCAACTTTAGGGAAATGAGATTAGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
* * * * *
10805867 AATCTGCTCCACTTCAACTTCAGGGAAATGAGATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * *
10805911 AA-CTTGCTCCAATGCAACTTCAGGAAGATGAA-ATTTGTGA-CTTT
1 AATC-TGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGT-ATCTTC
* ** * ** * * *
10805955 AACCTTTTCCACTGCCACTTCAGAGGCATAGAATTTGTGACTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAG-GG---AG-A--TAAGATTTGTATCTTC
** * * * * * *
10806006 AATCTATTCCATTGTAACTTTAGGGAAATAAGATTCGCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * * * *
10806050 AACCTGCTCCATTGCAACTTCAGGGAGATAAGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * **
10806094 AATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
* * * *
10806139 AATCT-TTCCATTGCAATTTCAAGGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
* ** * * * *
10806183 AATATTTTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * *
10806227 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCCTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
** * * *
10806272 AATCTGCTCCACTGCAGTTTCAGGGAGATAAGATTTATAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* *
10806316 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
** * *
10806361 AATCTGCTCCACTATAGCTTCAGGGAGATAAGATTTATATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * * * * *
10806405 AATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A----T--CTTC
* * * ** *
10806456 AATTTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTC
* * * *
10806501 AATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
* * *
10806545 AATATACTCTACAT-CAACTTCAGGGAGATGAA-ATTTGT
1 AATCTGCTCCAC-TGCAACTTCAGGGAGAT-AAGATTTGT
10806583 GACTTTAAAA
Statistics
Matches: 742, Mismatches: 163, Indels: 80
0.75 0.17 0.08
Matches are distributed among these distances:
43 6 0.01
44 402 0.54
45 225 0.30
46 3 0.00
47 3 0.00
48 3 0.00
49 3 0.00
50 4 0.01
51 92 0.12
52 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTC
Found at i:10805800 original size:89 final size:89
Alignment explanation
Indices: 10805594--10806533 Score: 610
Period size: 89 Copynumber: 10.4 Consensus size: 89
10805584 TAGTAGATTT
* * * * *
10805594 AATCTGAC-CCACTGCAACTTCAAAGG-TATAAGATTT-GTCGCTTCAATCTACTTCACTGCAAC
1 AATCTG-CTCCACTGCAACTTC-AAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAAC
***
10805656 TTCAGGGAGATAAGGCCTGTAACTTC
64 TTCAGGGAGATAAGATTTGTAACTTC
* * * * *
10805682 AATCTGCTCCACTGCAACTTC-AGATAGATAAGCTTCATTACCTTCAATCTGCTCCACTGCCACT
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
10805746 TCAGGGAGATAAGATTTGTAACTTC
65 TCAGGGAGATAAGATTTGTAACTTC
* *
10805771 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATAACTCGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TT-T-A-T--TAGCTTCAATCTGCTCCACTG
* * * * *
10805836 CAACTTTAGGGAAATGAGATTAGCTATCTTC
60 CAACTTCAGGGAGATAAGATTTG-TAACTTC
* * * * * * *
10805867 AATCTGCTCCACTTCAACTTCAGGGAAATGAGATTT-GTAGCTTTAA-CTTGCTCCAATGCAACT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATTAGCTTCAATC-TGCTCCACTGCAACT
* * *
10805930 TCAGGAAGATGAA-ATTTGTGACTTT
65 TCAGGGAGAT-AAGATTTGTAACTTC
* ** * * * * ** *
10805955 AACCTTTTCCACTGCCACTTCAGAGG-CAT-AGAATTTGTGACTTGTAACTTTAATCTATTCCAT
1 AATCTGCTCCACTGCAACTTCA-AGGAGATAAG-A-TT-T-A--T-TAGCTTCAATCTGCTCCAC
* * * * * *
10806018 TGTAACTTTAGGGAAATAAGATTCGCATCTTC
58 TGCAACTTCAGGGAGATAAGATTTGTAACTTC
* * * * * *
10806050 AACCTGCTCCATTGCAACTTCAGGGAGATAAGATTTA-TAGCTTTAATCTACTCTACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACTT
** *
10806114 CAGAAAGATAAGATTTGCTATCTTC
66 CAGGGAGATAAGATTTG-TAACTTC
* * * ** * * **
10806139 AATCT-TTCCATTGCAATTTCAAGGAGATAAGATTTGCTATCTTCAATATTTTCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACTT
* * *
10806203 CAGAGAGATAAGATTTATAACTTT
66 CAGGGAGATAAGATTTGTAACTTC
* ** * * **
10806227 AATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTTGCTATCCTCAATCTGCTCCACTGCAGTT
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
* *
10806291 TCAGGGAGATAAGATTTATAACTTT
65 TCAGGGAGATAAGATTTGTAACTTC
* ** * ** *
10806316 AATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTATAGCT
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
* *
10806380 TCAGGGAGATAAGATTTATATCTTC
65 TCAGGGAGATAAGATTTGTAACTTC
* * * * * * * * *
10806405 AATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGCTTTAATTTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TT-T-A--T-TAGCTTCAATCTGCTCCACTG
* ** * *
10806470 CAACTTCAGGGAAATAAGATCCGCTATCTTT
60 CAACTTCAGGGAGATAAGATTTG-TAACTTC
* *
10806501 AATCTACTCCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA
10806534 CTTGCATCTT
Statistics
Matches: 678, Mismatches: 135, Indels: 70
0.77 0.15 0.08
Matches are distributed among these distances:
86 2 0.00
87 3 0.00
88 124 0.18
89 330 0.49
90 9 0.01
91 1 0.00
92 2 0.00
93 2 0.00
94 7 0.01
95 125 0.18
96 73 0.11
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (89 bp):
AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACTT
CAGGGAGATAAGATTTGTAACTTC
Found at i:10806212 original size:133 final size:133
Alignment explanation
Indices: 10805647--10806623 Score: 568
Period size: 133 Copynumber: 7.2 Consensus size: 133
10805637 CAATCTACTT
* *** * * * * *
10805647 CACTGCAACTTCAGGGAGATAAGGCCTGTAACTTCAATCTGCTCCACTGCAACTTCAGATAGATA
1 CACTGCAACTTCAGAGAGATAAGATTTATATCTTTAATCTACTCCACTGCAACTTCAGAGAGATA
* *** * * * * *
10805712 AGCTTCATTACCTTCAATCTGCTCCACTGCCACTTCAGGGAGATAAGATTTG-TAACTTCAATCT
66 AGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGCTAACTTTAAT-T
**
10805776 GCTC
130 TTTC
** *
10805780 CACTGCAACTTCA-AGGAGATAAGATTTATAACTCGTAGCTTTAATCTGTTCCACTGCAACTTTA
1 CACTGCAACTTCAGA-GAGATAAGATTTAT-A----T--CTTTAATCTACTCCACTGCAACTTCA
* * * * * * * * * *
10805844 GGGAAATGAGATTAGCTATCTTCAATCTGCTCCACTTCAACTTCAGGGAAATGAGATTTG-TAGC
58 GAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGCTAAC
**
10805908 TTTAACTTGCTC
123 TTTAA-TTTTTC
* * * ** *
10805920 CAATGCAACTTCAG-GAAGATGAA-ATTTGTGA-CTTTAACCTTTTCCACTGCCACTTCAGAG-G
1 CACTGCAACTTCAGAG-AGAT-AAGATTTAT-ATCTTTAATCTACTCCACTGCAACTTCAGAGAG
* * * * * * *
10805981 CAT-AGAATTTGTGACTTGTAACTTTAATCTATTCCATTGTAACTTT-AGGGAAATAAGATTCGC
63 -ATAAG-A-TT-TG-C---TATCTTCAATCTACTCCACTGCAA-TTTCAGGGAGATAAGATTTGC
* * * **
10806044 -ATCTTCAACCTGCTC
119 TAACTTTAA-TTTTTC
* * * * *
10806059 CATTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATA
1 CACTGCAACTTCAGAGAGATAAGATTTATATCTTTAATCTACTCCACTGCAACTTCAGAGAGATA
* * * * *
10806124 AGATTTGCTATCTTCAATCT-TTCCATTGCAATTTCAAGGAGATAAGATTTGCTATCTTCAATAT
66 AGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGCTAACTTTAAT-T
10806188 TTTC
130 TTTC
* * *
10806192 CACTGCAACTTCAGAGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGAGAGATA
1 CACTGCAACTTCAGAGAGATAAGATTTATATCTTTAATCTACTCCACTGCAACTTCAGAGAGATA
* * * *
10806257 AGATTTGCTATCCTCAATCTGCTCCACTGCAGTTTCAGGGAGATAAGATTT-ATAACTTTAATCT
66 AGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGCTAACTTTAAT-T
**
10806321 GCTC
130 TTTC
* * * * ** * *
10806325 TACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTATAGCTTCAGGGAGAT
1 CACTGCAACTTCAGAGAGATAAGATTT-ATATCTTTAATCTACTCCACTGCAACTTCAGAGAGAT
* * * * * * *
10806390 AAGATTT-ATATCTTCAATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGCT
65 AAGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTG---C---TAACT
10806454 TTAATTTGTTC
124 TTAATTT-TTC
* * *** *
10806465 CACTGCAACTTCAGGGAAATAAGATCCGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAGAGAGATAAGAT-TTATATCTTTAATCTACTCCACTGCAACTTCAGAGAGAT
* * * * * *
10806530 AAGACTTGC-ATCTTTAATATACTCTACAT-CAACTTCAGGGAGATGAA-ATTTG-TGACTTTAA
65 AAGATTTGCTATCTTCAATCTACTCCAC-TGCAATTTCAGGGAGAT-AAGATTTGCTAACTTT-A
*
10806591 AATTTTC
127 ATTTTTC
* *
10806598 CATTGGAACTTCAG-GCAGATAAGATT
1 CACTGCAACTTCAGAG-AGATAAGATT
10806624 CGCCACGGTA
Statistics
Matches: 671, Mismatches: 127, Indels: 93
0.75 0.14 0.10
Matches are distributed among these distances:
131 3 0.00
132 27 0.04
133 250 0.37
134 69 0.10
135 1 0.00
136 2 0.00
137 2 0.00
138 5 0.01
139 93 0.14
140 213 0.32
141 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (133 bp):
CACTGCAACTTCAGAGAGATAAGATTTATATCTTTAATCTACTCCACTGCAACTTCAGAGAGATA
AGATTTGCTATCTTCAATCTACTCCACTGCAATTTCAGGGAGATAAGATTTGCTAACTTTAATTT
TTC
Found at i:10806565 original size:140 final size:140
Alignment explanation
Indices: 10806312--10806587 Score: 324
Period size: 140 Copynumber: 2.0 Consensus size: 140
10806302 AGATTTATAA
* * ** * *
10806312 CTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTATA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
* * * * * *
10806377 GCTTCAGGGAGATAAGATTTATATCTTCAATCTACCCCAGTGCCACTTCAGGGAGAT-AATATTT
66 ACTTCAGGGAGATAAGACTTACATCTTCAATATACCACAGTGCAACTTCAGGGAGATGAA-ATTT
10806441 GTAACTTGTAG
130 GTAACTTGTAG
* * * * *
10806452 CTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTATCTTTAATCTACTCCACTGCA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
* *
10806517 ACTTCAGGGAGATAAGACTTGCATCTTTAATATACTCTACA-T-CAACTTCAGGGAGATGAAATT
66 ACTTCAGGGAGATAAGACTTACATCTTCAATATAC-C-ACAGTGCAACTTCAGGGAGATGAAATT
*
10806580 TGTGACTT
129 TGTAACTT
10806588 TAAAATTTTC
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
140 107 0.95
141 4 0.04
142 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (140 bp):
CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
ACTTCAGGGAGATAAGACTTACATCTTCAATATACCACAGTGCAACTTCAGGGAGATGAAATTTG
TAACTTGTAG
Found at i:10814600 original size:19 final size:20
Alignment explanation
Indices: 10814576--10814618 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
10814566 GTCTTTTTTG
* *
10814576 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCACATGAA
10814595 TGAAATGTAATGCACATGAA
1 TGAAATGTAATGCACATGAA
10814615 TGAA
1 TGAA
10814619 TGCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCACATGAA
Found at i:10818505 original size:15 final size:16
Alignment explanation
Indices: 10818480--10818509 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10818470 GTAAATGGAC
10818480 TATTGTATTTGGTTTT
1 TATTGTATTTGGTTTT
10818496 TATT-TATTTGGTTT
1 TATTGTATTTGGTTT
10818510 GGTTTGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.00, G:0.17, T:0.70
Consensus pattern (16 bp):
TATTGTATTTGGTTTT
Found at i:10819099 original size:9 final size:9
Alignment explanation
Indices: 10819085--10819115 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
10819075 GTTAAACGAA
10819085 TCGAGTTAT
1 TCGAGTTAT
*
10819094 TCGAGTTAA
1 TCGAGTTAT
10819103 TCGAGTTAT
1 TCGAGTTAT
10819112 TCGA
1 TCGA
10819116 ATCAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:10819426 original size:30 final size:31
Alignment explanation
Indices: 10819392--10819451 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
10819382 AAACCTTTTA
*
10819392 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
10819422 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
10819452 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:10819579 original size:21 final size:22
Alignment explanation
Indices: 10819550--10819590 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
10819540 TCCCTCAAAC
10819550 TTTTATTCCCCAAAACTTTTTA
1 TTTTATTCCCCAAAACTTTTTA
10819572 TTTT-TTCCCCAAAACTTTT
1 TTTTATTCCCCAAAACTTTT
10819591 ACTTCTCACC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTATTCCCCAAAACTTTTTA
Found at i:10820107 original size:5 final size:5
Alignment explanation
Indices: 10820097--10820122 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10820087 GAACCAATAT
10820097 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
10820123 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:10820643 original size:2 final size:2
Alignment explanation
Indices: 10820636--10820663 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10820626 ACCATAAACT
10820636 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10820664 TTAATGGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10830955 original size:46 final size:46
Alignment explanation
Indices: 10830897--10831062 Score: 235
Period size: 46 Copynumber: 3.6 Consensus size: 46
10830887 TGTAATTAAG
* * *
10830897 GTGTATAAATGTTGTTAATAG-AGATGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAA
* *
10830943 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGTTACAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
* ** *
10830989 GTATTTAAATACTGTGAATTGAAGTGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
10831035 GTGTTTAAATGTTGTAAATTGAAGTGTT
1 GTGTTTAAATGTTGTAAATTGAAGTGTT
10831063 TTAAGTGTAA
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 102 0.98
47 2 0.02
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.38
Consensus pattern (46 bp):
GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
Found at i:10831063 original size:23 final size:23
Alignment explanation
Indices: 10830935--10831063 Score: 154
Period size: 23 Copynumber: 5.6 Consensus size: 23
10830925 AAAGTGCTGC
10830935 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
**
10830958 AAATTGAAGTG-TTAAAGTGTTAC
1 AAATTGAAGTGTTTAAA-TGTTGT
* **
10830981 AAATTGAAGTATTTAAATACTGT
1 AAATTGAAGTGTTTAAATGTTGT
* * *
10831004 GAATTGAAGTG-TTAAAGTGCTGC
1 AAATTGAAGTGTTTAAA-TGTTGT
10831027 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
10831050 AAATTGAAGTGTTT
1 AAATTGAAGTGTTT
10831064 TAAGTGTAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
22 10 0.11
23 68 0.77
24 10 0.11
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGTTGT
Found at i:10831189 original size:35 final size:35
Alignment explanation
Indices: 10831150--10831234 Score: 152
Period size: 35 Copynumber: 2.4 Consensus size: 35
10831140 AAACCCTAAA
10831150 CTGCCACCAACACCACTCCCACTCTCCCATGCTAT
1 CTGCCACCAACACCACTCCCACTCTCCCATGCTAT
*
10831185 CTGCCACCAACACCACTCCCACTCTCCCATGCTGT
1 CTGCCACCAACACCACTCCCACTCTCCCATGCTAT
*
10831220 CTGCCACCAGCACCA
1 CTGCCACCAACACCA
10831235 TCACACACCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.22, C:0.52, G:0.08, T:0.18
Consensus pattern (35 bp):
CTGCCACCAACACCACTCCCACTCTCCCATGCTAT
Done.