Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 47 of 199
Found at i:13916206 original size:21 final size:21
Alignment explanation
Indices: 13916182--13916300 Score: 73
Period size: 21 Copynumber: 5.7 Consensus size: 21
13916172 GTAAGCGCTA
13916182 AACAGAAACCCATAAGGGTTG
1 AACAGAAACCCATAAGGGTTG
* * * *
13916203 AACA-AAAGCTCATTAGAGCTG
1 AACAGAAA-CCCATAAGGGTTG
* *
13916224 AACAGAAACCTATAAGGGTTA
1 AACAGAAACCCATAAGGGTTG
* * *
13916245 AACA-AAAGCTCA-ATAGAGCTG
1 AACAGAAA-CCCATA-AGGGTTG
** *
13916266 AATGGAAACCCATTAGGGTTG
1 AACAGAAACCCATAAGGGTTG
*
13916287 AACAGAAACTCATA
1 AACAGAAACCCATA
13916301 TGAGTTAAAT
Statistics
Matches: 67, Mismatches: 25, Indels: 12
0.64 0.24 0.12
Matches are distributed among these distances:
20 7 0.10
21 54 0.81
22 6 0.09
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.18
Consensus pattern (21 bp):
AACAGAAACCCATAAGGGTTG
Found at i:13916241 original size:42 final size:42
Alignment explanation
Indices: 13916182--13916299 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
13916172 GTAAGCGCTA
13916182 AACAGAAACCCATAAGGGTTGAACAAAAGCTCATTAGAGCTG
1 AACAGAAACCCATAAGGGTTGAACAAAAGCTCATTAGAGCTG
* * *
13916224 AACAGAAACCTATAAGGGTTAAACAAAAGCTCAATAGAGCTG
1 AACAGAAACCCATAAGGGTTGAACAAAAGCTCATTAGAGCTG
** *
13916266 AATGGAAACCCATTAGGGTTGAACAGAAA-CTCAT
1 AACAGAAACCCATAAGGGTTGAACA-AAAGCTCAT
13916300 ATGAGTTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 63 0.95
43 3 0.05
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (42 bp):
AACAGAAACCCATAAGGGTTGAACAAAAGCTCATTAGAGCTG
Found at i:13924452 original size:24 final size:25
Alignment explanation
Indices: 13924419--13924468 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
13924409 TGTAAATCAG
13924419 AAAAATATCTC-TAGA-AATTTTCT
1 AAAAATATCTCTTAGATAATTTTCT
13924442 AAAAATAATCTCTTTAGATAATTTTCT
1 AAAAAT-ATCTC-TTAGATAATTTTCT
13924469 CTCTACAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.26
24 5 0.22
26 4 0.17
27 8 0.35
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (25 bp):
AAAAATATCTCTTAGATAATTTTCT
Found at i:13926588 original size:28 final size:28
Alignment explanation
Indices: 13926549--13926707 Score: 124
Period size: 28 Copynumber: 5.7 Consensus size: 28
13926539 GTGTCCACTG
* *
13926549 TTTTCAAATTTTATAGTTTTGCCCTTAT
1 TTTTCAGATTTTACAGTTTTGCCCTTAT
* *
13926577 TTTTCAGATTTTATAGTTTT-ACCTCTAT
1 TTTTCAGATTTTACAGTTTTGCCCT-TAT
* * * * *
13926605 TTTTTAAATTTTACAATTTTACCCCTAAT
1 TTTTCAGATTTTACAGTTTT-GCCCTTAT
** *
13926634 TTTT-AGATTTTACAAATTTGCCTTTAT
1 TTTTCAGATTTTACAGTTTTGCCCTTAT
* * *
13926661 TTTCCAGATTTTACAGTTTTTCCCTTGT
1 TTTTCAGATTTTACAGTTTTGCCCTTAT
* * *
13926689 TATTCATATTTTATAGTTT
1 TTTTCAGATTTTACAGTTT
13926708 GGACCTAGAA
Statistics
Matches: 104, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
27 11 0.11
28 84 0.81
29 6 0.06
30 3 0.03
ACGTcount: A:0.23, C:0.14, G:0.06, T:0.56
Consensus pattern (28 bp):
TTTTCAGATTTTACAGTTTTGCCCTTAT
Found at i:13927991 original size:24 final size:21
Alignment explanation
Indices: 13927963--13928012 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 21
13927953 ATTTAGCATT
13927963 CATGACATTTAACTTAATTTAAG
1 CATGACATTTAA-TTAA-TTAAG
**
13927986 ACATGATTTTTAATTAATTAAG
1 -CATGACATTTAATTAATTAAG
13928008 CATGA
1 CATGA
13928013 AATATAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.21
22 5 0.21
23 4 0.17
24 10 0.42
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (21 bp):
CATGACATTTAATTAATTAAG
Found at i:13928006 original size:22 final size:23
Alignment explanation
Indices: 13927970--13928012 Score: 63
Period size: 21 Copynumber: 1.9 Consensus size: 23
13927960 ATTCATGACA
13927970 TTTAACTTAATTTAAGACATGATT
1 TTTAACTTAATTTAAG-CATGATT
13927994 TTTAA-TTAA-TTAAGCATGA
1 TTTAACTTAATTTAAGCATGA
13928013 AATATAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 5 0.26
23 4 0.21
24 5 0.26
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (23 bp):
TTTAACTTAATTTAAGCATGATT
Found at i:13938326 original size:23 final size:26
Alignment explanation
Indices: 13938272--13938328 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
13938262 TACAAGGACT
13938272 TATGACATATTTTAACCTAGTATAAAA
1 TATGA-ATATTTTAACCTAGTATAAAA
*
13938299 TATGAATATTTTAA-TTA-TAT-AAA
1 TATGAATATTTTAACCTAGTATAAAA
13938322 TATGAAT
1 TATGAAT
13938329 GTTTAGCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.34
24 3 0.10
25 2 0.07
26 9 0.31
27 5 0.17
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (26 bp):
TATGAATATTTTAACCTAGTATAAAA
Found at i:13950129 original size:13 final size:13
Alignment explanation
Indices: 13950111--13950161 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
13950101 AGTTCTTCAT
*
13950111 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
13950124 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
13950137 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
13950150 TGCTTTTGAGAA
1 TGCTTTTCAGAA
13950162 ATTTGAGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:13950413 original size:20 final size:19
Alignment explanation
Indices: 13950388--13950434 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
13950378 ATTAATTATT
13950388 TATAAAATTTAATTAGAATA
1 TATAAAATTTAATTA-AATA
* * *
13950408 TATAAACTATATTTAAATA
1 TATAAAATTTAATTAAATA
13950427 TA-AAAATT
1 TATAAAATT
13950435 AAATAATTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 4 0.18
19 6 0.27
20 12 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TATAAAATTTAATTAAATA
Found at i:13953321 original size:18 final size:17
Alignment explanation
Indices: 13953281--13953322 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
13953271 AAATAAAGAT
13953281 AAATTAAATAAAATCTTA
1 AAATTAAAT-AAATCTTA
13953299 AAATTAAAT-AATCCTTA
1 AAATTAAATAAAT-CTTA
13953316 ATAATTA
1 A-AATTA
13953323 TCTTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 5 0.23
18 14 0.64
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTAAATAAATCTTA
Found at i:13953340 original size:15 final size:15
Alignment explanation
Indices: 13953317--13953346 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13953307 TAATCCTTAA
*
13953317 TAATTATCTTAATAT
1 TAATCATCTTAATAT
13953332 TAATCATCTTAATAT
1 TAATCATCTTAATAT
13953347 AATTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATCATCTTAATAT
Found at i:13953922 original size:9 final size:10
Alignment explanation
Indices: 13953908--13953979 Score: 62
Period size: 9 Copynumber: 7.3 Consensus size: 10
13953898 TTATATATTC
13953908 TTTTTCTTT-
1 TTTTTCTTTA
13953917 TTTTTCTTT-
1 TTTTTCTTTA
*
13953926 TTTTTCTTTC
1 TTTTTCTTTA
13953936 TTTTT-TTTA
1 TTTTTCTTTA
*
13953945 TTTTTATTTA
1 TTTTTCTTTA
*
13953955 TTTATTTATTTA
1 -TT-TTTCTTTA
13953967 TTTATT-TTTA
1 TTT-TTCTTTA
13953977 TTT
1 TTT
13953980 ATTTATTATT
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
9 26 0.46
10 17 0.30
11 6 0.11
12 8 0.14
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:13953935 original size:13 final size:13
Alignment explanation
Indices: 13953905--13953943 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
13953895 AAATTATATA
*
13953905 TTCTTT-TTCTTT
1 TTCTTTCTTTTTT
13953917 TT-TTTCTTTTTT
1 TTCTTTCTTTTTT
13953929 TTCTTTCTTTTTT
1 TTCTTTCTTTTTT
13953942 TT
1 TT
13953944 ATTTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 3 0.12
12 9 0.38
13 12 0.50
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTCTTTCTTTTTT
Found at i:13953948 original size:8 final size:8
Alignment explanation
Indices: 13953908--13954002 Score: 61
Period size: 8 Copynumber: 11.9 Consensus size: 8
13953898 TTATATATTC
*
13953908 TTTTTCTT
1 TTTTTATT
*
13953916 TTTTT-TC
1 TTTTTATT
13953923 TTTTT-TT
1 TTTTTATT
* *
13953930 TCTTTCTT
1 TTTTTATT
*
13953938 TTTTT-TA
1 TTTTTATT
13953945 TTTTTATT
1 TTTTTATT
*
13953953 TATTTATT
1 TTTTTATT
*
13953961 TATTTATTT
1 TTTTTA-TT
13953970 ATTTTTATT
1 -TTTTTATT
*
13953979 TATTTATT
1 TTTTTATT
*
13953987 ATTTATATT
1 -TTTTTATT
13953996 TTTTTAT
1 TTTTTAT
13954003 ACTTTAGGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
7 17 0.24
8 38 0.54
9 10 0.14
10 5 0.07
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTATT
Found at i:13953954 original size:4 final size:4
Alignment explanation
Indices: 13953947--13953992 Score: 71
Period size: 4 Copynumber: 12.2 Consensus size: 4
13953937 TTTTTTTATT
13953947 TTTA TTTA TTTA TTTA TTTA TTTA -TT- TTTA TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
13953992 T
1 T
13953993 ATTTTTTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 7 0.18
4 32 0.82
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:13953966 original size:22 final size:22
Alignment explanation
Indices: 13953941--13954002 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
13953931 CTTTCTTTTT
13953941 TTTATTTTTATTTATTTATTTA
1 TTTATTTTTATTTATTTATTTA
13953963 TTTATTTATT-TTTATTTATTTA
1 TTTATTT-TTATTTATTTATTTA
* *
13953985 -TTATTTATATTTTTTTAT
1 TTTATTTTTATTTATTTAT
13954003 ACTTTAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 1 0.03
21 14 0.39
22 19 0.53
23 2 0.06
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTATTTTTATTTATTTATTTA
Found at i:13953971 original size:26 final size:25
Alignment explanation
Indices: 13953941--13954002 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 25
13953931 CTTTCTTTTT
13953941 TTTATTTTTATTTATTTATTTATTTA
1 TTTATTTTTATTTATTTA-TTATTTA
13953967 TTTATTTTTATTTATTTATTATTTA
1 TTTATTTTTATTTATTTATTATTTA
13953992 TATT-TTTTTAT
1 T-TTATTTTTAT
13954003 ACTTTAGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTATTTTTATTTATTTATTATTTA
Found at i:13954008 original size:17 final size:17
Alignment explanation
Indices: 13953941--13954002 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 17
13953931 CTTTCTTTTT
13953941 TTTATTT-TTATTTATTTA
1 TTTATTTATTATTTA--TA
*
13953959 TTTATTTATTTATTTTTA
1 TTTATTTA-TTATTTATA
13953977 TTTATTTATTATTTATA
1 TTTATTTATTATTTATA
*
13953994 TTTTTTTAT
1 TTTATTTAT
13954003 ACTTTAGGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
17 16 0.41
18 17 0.44
20 6 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTATTTATTATTTATA
Found at i:13955066 original size:17 final size:17
Alignment explanation
Indices: 13955044--13955112 Score: 65
Period size: 17 Copynumber: 4.1 Consensus size: 17
13955034 CCAAATAAGT
13955044 AATAAATAATAAAATAA
1 AATAAATAATAAAATAA
13955061 AATAAAGTAAT-AAATAA
1 AATAAA-TAATAAAATAA
* *
13955078 AGTAAAGAA-ATAAAT--
1 AATAAATAATA-AAATAA
13955093 AATAAATAATAAAAATAA
1 AATAAATAAT-AAAATAA
13955111 AA
1 AA
13955113 ATTGGTTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
15 7 0.17
16 6 0.15
17 22 0.54
18 6 0.15
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (17 bp):
AATAAATAATAAAATAA
Found at i:13955078 original size:4 final size:4
Alignment explanation
Indices: 13955044--13955111 Score: 52
Period size: 4 Copynumber: 16.5 Consensus size: 4
13955034 CCAAATAAGT
*
13955044 AATA AAT- AATAA AATAA AATA AAGT- AATA AATA AAGTA AAGA AATA
1 AATA AATA AAT-A AAT-A AATA AA-TA AATA AATA AA-TA AATA AATA
*
13955090 AAT- AATA AATA ATAAA AATA AA
1 AATA AATA AATA A-ATA AATA AA
13955112 AATTGGTTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
3 7 0.13
4 30 0.57
5 16 0.30
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:13961568 original size:15 final size:14
Alignment explanation
Indices: 13961547--13961582 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
13961537 ATAATCCTTA
*
13961547 ATAATTATCTTAAT
1 ATAATTATCCTAAT
13961561 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
13961576 ATAATTA
1 ATAATTA
13961583 AAATAGAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:13963964 original size:136 final size:136
Alignment explanation
Indices: 13963753--13964036 Score: 408
Period size: 136 Copynumber: 2.1 Consensus size: 136
13963743 CCAGATTGAA
* * *
13963753 CTCATGTTTAATGTCCTGGCGGACTATTTATAATGCCATAGTCAAGCTATGGTCTTACACAATTG
1 CTCATATTTAATGTCCTGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTG
* * *
13963818 AATGCCCGTGTTTACTATCCCGATGGACTACCTATGTTGCCAGGGTCAAGCCAAGGCCTTACACC
66 AACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACC
13963883 T-AAGAT
131 TGAA-AT
* * *
13963889 CTCATATTTAATGTCTTGGTGGACTCTTTATAATGCCATAGCCAAGCTATGATCTTACACAATTG
1 CTCATATTTAATGTCCTGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTG
* * * * * * *
13963954 AACGCTCGTGTTTACTGTCCCGATGAACTACTTATGTTGCCATGGCCAAGCCAGGGTCTTACACT
66 AACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACC
13964019 TGAAAT
131 TGAAAT
13964025 CTCATATTTAAT
1 CTCATATTTAAT
13964037 ATCCCAGCGG
Statistics
Matches: 131, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
136 129 0.98
137 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (136 bp):
CTCATATTTAATGTCCTGGCGGACTATTTATAATGCCATAGCCAAGCTATGATCTTACACAATTG
AACGCCCGTGTTTACTATCCCGATGAACTACCTATGTTGCCAGGGCCAAGCCAAGGCCTTACACC
TGAAAT
Found at i:13964014 original size:69 final size:68
Alignment explanation
Indices: 13963735--13964017 Score: 171
Period size: 69 Copynumber: 4.1 Consensus size: 68
13963725 GCCGAGCTAT
* * * * ** * ** * *
13963735 GGTCTTACCCAGATTGAA-CTCATGTTTAATGTCCTGGCGGACTATTTATAATGCCATAGTCAAG
1 GGTCTTACACA-ATTGAAGCTCGTGTTTACTGTCCCGATGGACTACTTATGTTGCCATGGCCAAG
* *
13963799 CTAT
65 CCAA
* * * * *
13963803 GGTCTTACACAATTGAATGCCCGTGTTTACTATCCCGATGGACTACCTATGTTGCCAGGGTCAAG
1 GGTCTTACACAATTGAA-GCTCGTGTTTACTGTCCCGATGGACTACTTATGTTGCCATGGCCAAG
13963868 CCAA
65 CCAA
* * * * * ** * ** *
13963872 GGCCTTACACCTAA--G-ATCTCATATTTAATGTCTTGGTGGACT-CTTTATAATGCCATAGCCA
1 GGTCTTACA-C-AATTGAAGCTCGTGTTTACTGTCCCGATGGACTAC-TTATGTTGCCATGGCCA
* *
13963933 AGCTAT
63 AGCCAA
* *
13963939 GATCTTACACAATTGAACGCTCGTGTTTACTGTCCCGATGAACTACTTATGTTGCCATGGCCAAG
1 GGTCTTACACAATTGAA-GCTCGTGTTTACTGTCCCGATGGACTACTTATGTTGCCATGGCCAAG
*
13964004 CCAG
65 CCAA
13964008 GGTCTTACAC
1 GGTCTTACAC
13964018 TTGAAATCTC
Statistics
Matches: 155, Mismatches: 50, Indels: 19
0.69 0.22 0.08
Matches are distributed among these distances:
65 2 0.01
66 2 0.01
67 46 0.30
68 12 0.08
69 89 0.57
70 2 0.01
71 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (68 bp):
GGTCTTACACAATTGAAGCTCGTGTTTACTGTCCCGATGGACTACTTATGTTGCCATGGCCAAGC
CAA
Found at i:13965242 original size:25 final size:27
Alignment explanation
Indices: 13965213--13965276 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 27
13965203 ATTAAGTTAG
13965213 TTAAATATATTTATAATA-TAT-TATT
1 TTAAATATATTTATAATATTATATATT
* **
13965238 TTAAATATATATATTTTATTATATATT
1 TTAAATATATTTATAATATTATATATT
13965265 TTAAATA-ATTTA
1 TTAAATATATTTA
13965277 GTTAATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 15 0.45
26 7 0.21
27 11 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TTAAATATATTTATAATATTATATATT
Found at i:13965244 original size:14 final size:14
Alignment explanation
Indices: 13965222--13965271 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
13965212 GTTAAATATA
13965222 TTTATAATATATTAT
1 TTTA-AATATATTAT
13965237 TTTAAATATATATAT
1 TTTAAATATAT-TAT
*
13965252 TTT-ATTATA-TAT
1 TTTAAATATATTAT
13965264 TTTAAATA
1 TTTAAATA
13965272 ATTTAGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 6 0.19
13 3 0.10
14 12 0.39
15 10 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTAAATATATTAT
Found at i:13965264 original size:27 final size:29
Alignment explanation
Indices: 13965217--13965271 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 29
13965207 AGTTAGTTAA
13965217 ATATATTTATAATATATTATTTTAAATAT
1 ATATATTTATAATATATTATTTTAAATAT
*
13965246 ATATATTT-TATTATA-TATTTTAAATA
1 ATATATTTATAATATATTATTTTAAATA
13965272 ATTTAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 11 0.44
28 6 0.24
29 8 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
ATATATTTATAATATATTATTTTAAATAT
Found at i:13981842 original size:41 final size:42
Alignment explanation
Indices: 13981797--13981896 Score: 116
Period size: 41 Copynumber: 2.4 Consensus size: 42
13981787 TGATTCAGAA
* * *
13981797 CACCGACATTAAGCTTGCTAGACATATAGTCTGAAA-ATTTT
1 CACCGACATTAAGCCTGCAAGACATACAGTCTGAAATATTTT
* *
13981838 CACCGGCATTAAGCCTGCAAGACGTACAGTCTGAAATATTTT
1 CACCGACATTAAGCCTGCAAGACATACAGTCTGAAATATTTT
*
13981880 -ACC-AGCGTTAAGCCTGC
1 CACCGA-CATTAAGCCTGC
13981897 TAGGCACAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 45 0.90
42 5 0.10
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
CACCGACATTAAGCCTGCAAGACATACAGTCTGAAATATTTT
Found at i:13983730 original size:41 final size:41
Alignment explanation
Indices: 13983685--13983858 Score: 249
Period size: 41 Copynumber: 4.2 Consensus size: 41
13983675 ACTGGCACTT
* *
13983685 AGCCTGCTGGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
*
13983726 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGTGTCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
* *
13983767 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGTCGACA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
* ** * * *
13983808 AGCCTGCTAGACTTAAGGTCTGAAACATATCACTGGCATCA
1 AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
13983849 AGCCTGCTAG
1 AGCCTGCTAG
13983859 GCACCGAGCC
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 119 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGCGTCA
Found at i:13983850 original size:82 final size:82
Alignment explanation
Indices: 13983646--13983858 Score: 250
Period size: 82 Copynumber: 2.6 Consensus size: 82
13983636 GGCACAAAAA
* * ** * *
13983646 CCTGCTAGGCTTAAGGCCTGATTCA-ATACACTGGCA-CTTAGCCTGCTGGACATAAAGTCTGAA
1 CCTGCTAGACTTAAGGTCTGAAACATAT-CACTGGCATC-AAGCCTGCTAGACATAAAGTCTGAA
*
13983709 ATGTTTCACCGGCGTCAAG
64 ATGTTTCACCGGCGACAAG
* ** * * ** *
13983728 CCTGCTAGACTTAAAGTCTGAAATGTTTCACCGGTGTCAAGCCTGCTAGACTTAAAGTCTGAAAT
1 CCTGCTAGACTTAAGGTCTGAAACATATCACTGGCATCAAGCCTGCTAGACATAAAGTCTGAAAT
*
13983793 GTTTCACCGTCGACAAG
66 GTTTCACCGGCGACAAG
13983810 CCTGCTAGACTTAAGGTCTGAAACATATCACTGGCATCAAGCCTGCTAG
1 CCTGCTAGACTTAAGGTCTGAAACATATCACTGGCATCAAGCCTGCTAG
13983859 GCACCGAGCC
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
82 104 0.98
83 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (82 bp):
CCTGCTAGACTTAAGGTCTGAAACATATCACTGGCATCAAGCCTGCTAGACATAAAGTCTGAAAT
GTTTCACCGGCGACAAG
Found at i:13986875 original size:16 final size:13
Alignment explanation
Indices: 13986862--13986890 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13986852 TCAAACGATT
13986862 AAATTTTCACACG
1 AAATTTTCACACG
13986875 AAATTTTCACAC-
1 AAATTTTCACACG
13986887 AAAT
1 AAAT
13986891 AACTTAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:13994624 original size:13 final size:14
Alignment explanation
Indices: 13994595--13994641 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
13994585 ATTTTTTTAG
13994595 AAAAATA-GCATTAA
1 AAAAATATG-ATTAA
*
13994609 AAATAAAATGA-TAA
1 AAA-AATATGATTAA
13994623 AAAAATATGATTAA
1 AAAAATATGATTAA
13994637 AAAAA
1 AAAAA
13994642 CATAAAATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
13 6 0.21
14 17 0.61
15 4 0.14
16 1 0.04
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.21
Consensus pattern (14 bp):
AAAAATATGATTAA
Found at i:13995397 original size:325 final size:318
Alignment explanation
Indices: 13994727--13995495 Score: 1174
Period size: 325 Copynumber: 2.4 Consensus size: 318
13994717 AATAAATTTC
* *
13994727 AAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGA-AATCTTTTAAAGTAA
1 AAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTAA
* **
13994791 TAAAATGCGAAGAAAAAAAAACGAACAAATGGCCGAAG-AAAG-GTGTTTTACTAACTTTTTTAA
66 TAAAATGCG-AGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGACTTACTAACTTTTTTAA
* * *
13994854 AAATTCAGAAATAATTAATACAAATATTTCTAACAAAATGTACTGAAATAATATAAAATAATAAA
130 AAATTCAGAAAAAATTAATACAAAAATTTCTAAAAAAATGTACTGAAATAATATAAAATAATAAA
13994919 ATACAAAAATAATATATTTTTATTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAGAGCA
195 ATACAAAAATAATATATTTTTATTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAGAGCA
* ***
13994984 GGAATAAGGATTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTAATAAATTTC
260 GAAATAAGGATTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTAATAAATGAA
13995043 AAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTAA
1 AAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTAA
*
13995108 TAAAATGCTGAG-AAAAAATACGAACAAATGGCTGAAGTAAAGAGTGAACACTTACTAACTTTTT
66 TAAAATGC-GAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTG---ACTTACTAACTTTTT
* *
13995172 TAAAAATTCGGAAAAAATTAATAGAAAAATTTC-AAAAAAATGTACTGAAATAATATAAAATAAT
127 TAAAAATTCAGAAAAAATTAATACAAAAATTTCTAAAAAAATGTACTGAAATAATATAAAATAAT
* *
13995236 AAAATACGAAAATAATATATTTTT-TTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAGG
192 AAAATACAAAAATAATATATTTTTATTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAGA
*
13995300 GCAGAAATAAGGGTTGGGTTTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTAATAAA-
257 GCAGAAATAA------GGATTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTAATAAAT
13995364 GAA
316 GAA
13995367 ATAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTA
1 A-AACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTA
* ** *
13995432 ATAAAATTCCGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGTTTTAGTAACTTTTTT
65 ATAAAA-TGCGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGACTTACTAACTTTTTT
13995496 TTTCAACTTG
Statistics
Matches: 414, Mismatches: 23, Indels: 25
0.90 0.05 0.05
Matches are distributed among these distances:
316 72 0.17
317 27 0.07
318 4 0.01
319 48 0.12
320 53 0.13
321 42 0.10
323 13 0.03
324 1 0.00
325 119 0.29
326 35 0.08
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (318 bp):
AAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTTTTTTAAAGTAA
TAAAATGCGAGAAAAAAATACGAACAAATGGCCGAAGTAAAGAGTGACTTACTAACTTTTTTAAA
AATTCAGAAAAAATTAATACAAAAATTTCTAAAAAAATGTACTGAAATAATATAAAATAATAAAA
TACAAAAATAATATATTTTTATTGGAAGTAATAAAATTCGGGAAAATAATACGAGCAAAGAGCAG
AAATAAGGATTTTTTTACACTAAATTAATTTAAAAAACACACTAAATTAATAAATGAA
Found at i:13998177 original size:46 final size:46
Alignment explanation
Indices: 13998080--13998231 Score: 238
Period size: 46 Copynumber: 3.4 Consensus size: 46
13998070 TATGTATGAT
* *
13998080 CACTTATCAC-TTGTCTC-TGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
13998123 CACTTATCACTTTGTCACTTCATCTGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
13998169 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
13998215 CACTTATCACTTTGTCA
1 CACTTATCACTTTGTCA
13998232 TTTGTCACTG
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
43 10 0.10
44 6 0.06
45 17 0.17
46 66 0.67
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:13999582 original size:37 final size:37
Alignment explanation
Indices: 13999518--13999627 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
13999508 TACGTATGAT
*
13999518 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
13999554 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
13999591 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
13999628 TAAAGCTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 10 0.14
37 60 0.86
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:13999670 original size:52 final size:52
Alignment explanation
Indices: 13999591--13999905 Score: 384
Period size: 52 Copynumber: 6.2 Consensus size: 52
13999581 TAAGTGTAGC
* * *
13999591 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
13999644 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* *
13999696 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
13999748 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
13999794 CAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * * *
13999840 CACTTTCCACTTGTCACTTGATCAGATAACTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
13999892 CACTTTATCACTTG
1 CACTTT-TCACTTG
13999906 ATCAGAAGTA
Statistics
Matches: 231, Mismatches: 21, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
46 82 0.35
47 2 0.01
48 2 0.01
52 130 0.56
53 15 0.06
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:13999701 original size:98 final size:98
Alignment explanation
Indices: 13999591--13999911 Score: 429
Period size: 98 Copynumber: 3.3 Consensus size: 98
13999581 TAAGTGTAGC
* *
13999591 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
13999656 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
13999689 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC---
1 CACTTATCACTTT--A----TCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT
*
13999751 T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
60 TCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** * *
13999787 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
* ** *
13999852 GTCACTTGATCAGATAACTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
13999885 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
13999912 AGTACTCAAA
Statistics
Matches: 196, Mismatches: 15, Indels: 24
0.83 0.06 0.10
Matches are distributed among these distances:
92 38 0.19
96 1 0.01
98 115 0.59
101 1 0.01
104 41 0.21
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:14004589 original size:726 final size:726
Alignment explanation
Indices: 14003197--14004654 Score: 2862
Period size: 726 Copynumber: 2.0 Consensus size: 726
14003187 CATTTCCCAT
* *
14003197 AATTTTGCATTTGTTACAATTTAGTCCTTTTTATTCAATTAATTATCGGAACTTTAAAATTTCTT
1 AATTTTGCATTTCTTACAATTTAATCCTTTTTATTCAATTAATTATCGGAACTTTAAAATTTCTT
14003262 AACGAAACTTTAATACTAACTTTTTAACACTACATAAATATTTATAAAAGTATTTATGGCTCGGT
66 AACGAAACTTTAATACTAACTTTTTAACACTACATAAATATTTATAAAAGTATTTATGGCTCGGT
14003327 TTAAAATCCCTGAGGTCTCGATACCTCATTTTCGATTCTAATTATTTTAATATTTATTTCTAGTG
131 TTAAAATCCCTGAGGTCTCGATACCTCATTTTCGATTCTAATTATTTTAATATTTATTTCTAGTG
14003392 TACTATTCACTATTTCAAAAATTTTCCTAATTTCACATTTAACTTATACTCACTAAATTAATAAT
196 TACTATTCACTATTTCAAAAATTTTCCTAATTTCACATTTAACTTATACTCACTAAATTAATAAT
14003457 ATTTTCTACCCATTTGTCGAATTTAGTGATCTTGAACCACCATTCTGACACCTCTAAAAATTCAG
261 ATTTTCTACCCATTTGTCGAATTTAGTGATCTTGAACCACCATTCTGACACCTCTAAAAATTCAG
14003522 GCCATTACATTTTTCCTCGTCGGATTTGTGGTTTCAAAATCACTGTTCCGACTAGACCCAAAATC
326 GCCATTACATTTTTCCTCGTCGGATTTGTGGTTTCAAAATCACTGTTCCGACTAGACCCAAAATC
14003587 AGGCTGTTACAACCACACCATCGAACCATCAATTTTAGGGGTTTAATGCACTTTTTGTACATTAC
391 AGGCTGTTACAACCACACCATCGAACCATCAATTTTAGGGGTTTAATGCACTTTTTGTACATTAC
14003652 AAAGTTTGTATTCTTTTTGTATAAATTTAATATTTCTAATTTAATCTTTGCTTACTTCTAAACTT
456 AAAGTTTGTATTCTTTTTGTATAAATTTAATATTTCTAATTTAATCTTTGCTTACTTCTAAACTT
*
14003717 TTTTGTATAAATTTAATTATTCTATTTTTGTATTATATTAAAGCTGATTCCAATTATAAATGCCT
521 TTTTGTATAAATTTAATTATTCTATTTTTGTATTATATTAAAGCTGAATCCAATTATAAATGCCT
14003782 CCATTTTCGATATAATTTTAATAATTCCAAATGCATACATGGTATTTTATAACTTAATTTGGTAC
586 CCATTTTCGATATAATTTTAATAATTCCAAATGCATACATGGTATTTTATAACTTAATTTGGTAC
14003847 AATTTAAGCATAGGTATAAGCTGAATAATAAAAATTATTTCAAATGAATTATACTTTTTATAACA
651 AATTTAAGCATAGGTATAAGCTGAATAATAAAAATTATTTCAAATGAATTATACTTTTTATAACA
14003912 CTATACATAAA
716 CTATACATAAA
14003923 AATTTTGCATTTCTTACAATTTAATCCTTTTTATTCAATTAATTATCGGAACTTTAAAATTTCTT
1 AATTTTGCATTTCTTACAATTTAATCCTTTTTATTCAATTAATTATCGGAACTTTAAAATTTCTT
*
14003988 ATCGAAACTTTAATACTAACTTTTTAACACTACATAAATATTTATAAAAGTATTTATGGCTCGGT
66 AACGAAACTTTAATACTAACTTTTTAACACTACATAAATATTTATAAAAGTATTTATGGCTCGGT
14004053 TTAAAATCCCTGAGGTCTCGATACCTCATTTTCGATTCTAATTATTTTAATATTTATTTCTAGTG
131 TTAAAATCCCTGAGGTCTCGATACCTCATTTTCGATTCTAATTATTTTAATATTTATTTCTAGTG
14004118 TACTATTCACTATTTCAAAAATTTTCCTAATTTCACATTTAACTTATACTCACTAAATTAATAAT
196 TACTATTCACTATTTCAAAAATTTTCCTAATTTCACATTTAACTTATACTCACTAAATTAATAAT
* *
14004183 ATTTTCTACCCATTTGTCGAATTTAGTGATCTTGAACCACCGTTCTGACACCTCTGAAAATTCAG
261 ATTTTCTACCCATTTGTCGAATTTAGTGATCTTGAACCACCATTCTGACACCTCTAAAAATTCAG
14004248 GCCATTACATTTTTCCTCGTCGGATTTGTGGTTTCAAAATCACTGTTCCGACTAGACCCAAAATC
326 GCCATTACATTTTTCCTCGTCGGATTTGTGGTTTCAAAATCACTGTTCCGACTAGACCCAAAATC
14004313 AGGCTGTTACAACCACACCATCGAACCATCAATTTTAGGGGTTTAATGCACTTTTTGTACATTAC
391 AGGCTGTTACAACCACACCATCGAACCATCAATTTTAGGGGTTTAATGCACTTTTTGTACATTAC
14004378 AAAGTTTGTATTCTTTTTGTATAAATTTAATATTTCTAATTTAATCTTTGCTTACTTCTAAACTT
456 AAAGTTTGTATTCTTTTTGTATAAATTTAATATTTCTAATTTAATCTTTGCTTACTTCTAAACTT
14004443 TTTTGTATAAATTTAATTATTCTATTTTTGTATTATATTAAAGCTGAATCCAATTATAAATGCCT
521 TTTTGTATAAATTTAATTATTCTATTTTTGTATTATATTAAAGCTGAATCCAATTATAAATGCCT
14004508 CCATTTTCGATATAATTTTAATAATTCCAAATGCATACATGGTATTTTATAACTTAATTTGGTAC
586 CCATTTTCGATATAATTTTAATAATTCCAAATGCATACATGGTATTTTATAACTTAATTTGGTAC
14004573 AATTTAAGCATAGGTATAAGCTGAATAATAAAAATTATTTCAAATGAATTATACTTTTTATAACA
651 AATTTAAGCATAGGTATAAGCTGAATAATAAAAATTATTTCAAATGAATTATACTTTTTATAACA
14004638 CTATACATAAA
716 CTATACATAAA
14004649 AATTTT
1 AATTTT
14004655 ACATCATTAG
Statistics
Matches: 726, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
726 726 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (726 bp):
AATTTTGCATTTCTTACAATTTAATCCTTTTTATTCAATTAATTATCGGAACTTTAAAATTTCTT
AACGAAACTTTAATACTAACTTTTTAACACTACATAAATATTTATAAAAGTATTTATGGCTCGGT
TTAAAATCCCTGAGGTCTCGATACCTCATTTTCGATTCTAATTATTTTAATATTTATTTCTAGTG
TACTATTCACTATTTCAAAAATTTTCCTAATTTCACATTTAACTTATACTCACTAAATTAATAAT
ATTTTCTACCCATTTGTCGAATTTAGTGATCTTGAACCACCATTCTGACACCTCTAAAAATTCAG
GCCATTACATTTTTCCTCGTCGGATTTGTGGTTTCAAAATCACTGTTCCGACTAGACCCAAAATC
AGGCTGTTACAACCACACCATCGAACCATCAATTTTAGGGGTTTAATGCACTTTTTGTACATTAC
AAAGTTTGTATTCTTTTTGTATAAATTTAATATTTCTAATTTAATCTTTGCTTACTTCTAAACTT
TTTTGTATAAATTTAATTATTCTATTTTTGTATTATATTAAAGCTGAATCCAATTATAAATGCCT
CCATTTTCGATATAATTTTAATAATTCCAAATGCATACATGGTATTTTATAACTTAATTTGGTAC
AATTTAAGCATAGGTATAAGCTGAATAATAAAAATTATTTCAAATGAATTATACTTTTTATAACA
CTATACATAAA
Found at i:14007074 original size:6 final size:6
Alignment explanation
Indices: 14007065--14007090 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14007055 CCCTCCCTAT
14007065 TTTCAC TTTCAC TTTCAC TTTCAC TT
1 TTTCAC TTTCAC TTTCAC TTTCAC TT
14007091 AACACCCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTCAC
Found at i:14013032 original size:20 final size:19
Alignment explanation
Indices: 14013006--14013070 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
14012996 AATGTTTTTA
14013006 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
* ***
14013025 ACTTATGTAAT-ATTTTTAG
1 A-TTATGTAGTGATTCAAAG
14013044 -TTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
14013062 ATTTATGTA
1 A-TTATGTA
14013071 ATGTTTTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 6 0.18
20 15 0.44
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.45
Consensus pattern (19 bp):
ATTATGTAGTGATTCAAAG
Found at i:14013035 original size:37 final size:37
Alignment explanation
Indices: 14012981--14013093 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
14012971 TTATGTGTTA
14012981 ATTC-AAGACTTATGTAATGTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATGTTTTTAATTATGTAGTG
* *
14013017 ATTCAAAGACTTATGTAATATTTTTAGTTATGTAGTG
1 ATTCAAAGACTTATGTAATGTTTTTAATTATGTAGTG
*
14013054 ATTCAAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATGTTTTTAATTATGTAGTG
14013091 ATT
1 ATT
14013094 TTATTCGGGT
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
36 4 0.06
37 67 0.94
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (37 bp):
ATTCAAAGACTTATGTAATGTTTTTAATTATGTAGTG
Found at i:14013095 original size:17 final size:17
Alignment explanation
Indices: 14012990--14013096 Score: 54
Period size: 17 Copynumber: 5.9 Consensus size: 17
14012980 AATTCAAGAC
*
14012990 TTATGTAATGTTTTTAA
1 TTATGTAATGATTTTAA
* **
14013007 TTATGTAGTGATTCAAAGA
1 TTATGTAATGATT-TTA-A
*
14013026 CTTATGTAAT-ATTTTTAG
1 -TTATGTAATGA-TTTTAA
* **
14013044 TTATGTAGTGATTCAAAGA
1 TTATGTAATGATT-TTA-A
*
14013063 TTTATGTAATGTTTTTAA
1 -TTATGTAATGATTTTAA
*
14013081 TTATGTAGTGATTTTA
1 TTATGTAATGATTTTA
14013097 TTCGGGTAAT
Statistics
Matches: 64, Mismatches: 18, Indels: 16
0.65 0.18 0.16
Matches are distributed among these distances:
17 35 0.55
18 4 0.06
19 4 0.06
20 21 0.33
ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50
Consensus pattern (17 bp):
TTATGTAATGATTTTAA
Found at i:14013114 original size:9 final size:9
Alignment explanation
Indices: 14013100--14013166 Score: 62
Period size: 9 Copynumber: 7.0 Consensus size: 9
14013090 GATTTTATTC
14013100 GGGTAATTT
1 GGGTAATTT
14013109 GGGTAATTTT
1 GGGTAA-TTT
*
14013119 CGGGTAATTC
1 -GGGTAATTT
*
14013129 GAGTAATTT
1 GGGTAATTT
*
14013138 GGATAATTTT
1 GGGTAA-TTT
*
14013148 CGGGTAATTC
1 -GGGTAATTT
14013158 GGGTAATTT
1 GGGTAATTT
14013167 TTAACCAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
9 25 0.54
10 10 0.22
11 11 0.24
ACGTcount: A:0.24, C:0.06, G:0.28, T:0.42
Consensus pattern (9 bp):
GGGTAATTT
Found at i:14013138 original size:29 final size:29
Alignment explanation
Indices: 14013096--14013166 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
14013086 TAGTGATTTT
*
14013096 ATTCGGGTAATTTGGGTAATTTTCGGGTA
1 ATTCGGGTAATTTGGATAATTTTCGGGTA
*
14013125 ATTCGAGTAATTTGGATAATTTTCGGGTA
1 ATTCGGGTAATTTGGATAATTTTCGGGTA
14013154 ATTCGGGTAATTT
1 ATTCGGGTAATTT
14013167 TTAACCAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (29 bp):
ATTCGGGTAATTTGGATAATTTTCGGGTA
Found at i:14013167 original size:20 final size:19
Alignment explanation
Indices: 14013096--14013166 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
14013086 TAGTGATTTT
14013096 ATTCGGGTAATTT-GGGTA
1 ATTCGGGTAATTTCGGGTA
*
14013114 ATTTTCGGGTAA-TTCGAGTA
1 A--TTCGGGTAATTTCGGGTA
* *
14013134 ATTTGGATAATTTTCGGGTA
1 ATTCGGGTAA-TTTCGGGTA
14013154 ATTCGGGTAATTT
1 ATTCGGGTAATTT
14013167 TTAACCAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
18 8 0.19
19 5 0.12
20 29 0.69
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (19 bp):
ATTCGGGTAATTTCGGGTA
Found at i:14014292 original size:40 final size:41
Alignment explanation
Indices: 14014209--14014320 Score: 115
Period size: 40 Copynumber: 2.8 Consensus size: 41
14014199 ACCCAATAAA
* *
14014209 AATAATAA-TA-GTTTTATACTCAAAATAAT-AGTAACTAAC
1 AATAATAATTAGGTTTT-TACTAAAAATAATAACTAACTAAC
* *
14014248 AATAATAATTAGGGTTTTACTAAAAATAATAACTAACT-AT
1 AATAATAATTAGGTTTTTACTAAAAATAATAACTAACTAAC
* *
14014288 AATAATAATACTAGTTTTTTACTAACAATAATA
1 AATAATAAT--TAGGTTTTTACTAAAAATAATA
14014321 CTACGTAACA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
39 8 0.13
40 24 0.39
41 10 0.16
42 19 0.31
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (41 bp):
AATAATAATTAGGTTTTTACTAAAAATAATAACTAACTAAC
Found at i:14020046 original size:2 final size:2
Alignment explanation
Indices: 14020039--14020095 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
14020029 CAAGAACTAT
14020039 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
14020081 CA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA G
14020096 GGAGGGAGGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14024887 original size:22 final size:23
Alignment explanation
Indices: 14024834--14024889 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
14024824 TTTAATTAAA
* * *
14024834 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
14024857 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
14024879 ATTAAAATTAA
1 ATTAAAATTAA
14024890 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:14024902 original size:16 final size:16
Alignment explanation
Indices: 14024865--14024904 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
14024855 TTAATAAAAT
* *
14024865 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
14024881 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
14024897 TAAAATTA
1 TAAAATTA
14024905 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:14024974 original size:66 final size:66
Alignment explanation
Indices: 14024893--14025157 Score: 454
Period size: 66 Copynumber: 4.1 Consensus size: 66
14024883 AAATTAATTG
*
14024893 TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
14024958 A
66 A
*
14024959 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTATAATAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
14025024 A
66 A
14025025 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
14025090 A
66 A
*
14025091 TTAGTAAATTTATC-AA--ATT-A---TTAATTGTATTAATTGTTGTAACAAAATCTAACATTTG
1 TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
14025149 A
66 A
14025150 TTAGTAAA
1 TTAGTAAA
14025158 ACAAACTTGA
Statistics
Matches: 195, Mismatches: 4, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
59 46 0.24
62 1 0.01
63 3 0.02
65 2 0.01
66 143 0.73
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.46
Consensus pattern (66 bp):
TTAGTAAATTTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
A
Found at i:14025254 original size:23 final size:22
Alignment explanation
Indices: 14025224--14025266 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
14025214 AAATAAACTT
*
14025224 AAAATAAAAACTATTATATTTTA
1 AAAATAAAAAATA-TATATTTTA
14025247 AAAATAAAAAATATATATTT
1 AAAATAAAAAATATATATTT
14025267 AATATTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAATAAAAAATATATATTTTA
Found at i:14026031 original size:22 final size:22
Alignment explanation
Indices: 14026005--14026078 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
14025995 ATTATACAAG
*
14026005 TAATACCAAAAAAACTATCAAA
1 TAATACCAAAAAAACTGTCAAA
14026027 TAATACC---AAAACTGT-AAA
1 TAATACCAAAAAAACTGTCAAA
*
14026045 -AAAACTGCAAAAAAACTGTCAAA
1 TAATAC--CAAAAAAACTGTCAAA
14026068 TAATACCAAAA
1 TAATACCAAAA
14026079 CTGTCAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
17 4 0.10
18 3 0.07
19 8 0.19
22 20 0.48
23 3 0.07
24 4 0.10
ACGTcount: A:0.61, C:0.18, G:0.04, T:0.18
Consensus pattern (22 bp):
TAATACCAAAAAAACTGTCAAA
Found at i:14026037 original size:19 final size:19
Alignment explanation
Indices: 14026015--14026085 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
14026005 TAATACCAAA
*
14026015 AAAACTATCAAATAATACC
1 AAAACTGTCAAATAATACC
* * **
14026034 AAAACTGTAAAAAAACTGCAAA
1 AAAACTGTCAAATAA-T--ACC
14026056 AAAACTGTCAAATAATACC
1 AAAACTGTCAAATAATACC
14026075 AAAACTGTCAA
1 AAAACTGTCAA
14026086 TTTAAATATT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
19 24 0.60
20 1 0.03
21 1 0.03
22 14 0.35
ACGTcount: A:0.58, C:0.18, G:0.06, T:0.18
Consensus pattern (19 bp):
AAAACTGTCAAATAATACC
Found at i:14026050 original size:11 final size:11
Alignment explanation
Indices: 14026034--14026063 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14026024 AAATAATACC
14026034 AAAACTGTAAA
1 AAAACTGTAAA
*
14026045 AAAACTGCAAA
1 AAAACTGTAAA
14026056 AAAACTGT
1 AAAACTGT
14026064 CAAATAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.13, G:0.10, T:0.17
Consensus pattern (11 bp):
AAAACTGTAAA
Found at i:14026491 original size:9 final size:9
Alignment explanation
Indices: 14026479--14026504 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14026469 ATCATCATCC
14026479 TCATCGTCG
1 TCATCGTCG
14026488 TCATCGTCG
1 TCATCGTCG
14026497 TCATCGTC
1 TCATCGTC
14026505 CTTTTTGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.19, T:0.35
Consensus pattern (9 bp):
TCATCGTCG
Found at i:14028977 original size:13 final size:13
Alignment explanation
Indices: 14028959--14029089 Score: 126
Period size: 13 Copynumber: 10.2 Consensus size: 13
14028949 AATTTAAAAT
*
14028959 TTAAAACATTATA
1 TTAAAACAGTATA
*
14028972 TTAAAACAATATAA
1 TTAAAACAGTAT-A
*
14028986 TTATAACAGTATA
1 TTAAAACAGTATA
*
14028999 TTAAAACAATATA
1 TTAAAACAGTATA
*
14029012 TTAAAAAAGTATA
1 TTAAAACAGTATA
* *
14029025 TTTATAATAGTATA
1 -TTAAAACAGTATA
*
14029039 TTAAAACAATATA
1 TTAAAACAGTATA
*
14029052 TTATAA-A-T-T-
1 TTAAAACAGTATA
14029061 TTAAAACAGTATA
1 TTAAAACAGTATA
*
14029074 TTAAAATAGTATA
1 TTAAAACAGTATA
14029087 TTA
1 TTA
14029090 CAGTAAAAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
9 5 0.05
10 2 0.02
11 2 0.02
12 2 0.02
13 64 0.66
14 22 0.23
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:14029004 original size:40 final size:40
Alignment explanation
Indices: 14028959--14029054 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 40
14028949 AATTTAAAAT
*
14028959 TTAAAACATTATATTAAAACAA-TATAATTATAACAGTATA
1 TTAAAACAATATATTAAAA-AAGTATAATTATAACAGTATA
* *
14028999 TTAAAACAATATATTAAAAAAGTATATTTATAATAGTATA
1 TTAAAACAATATATTAAAAAAGTATAATTATAACAGTATA
14029039 TTAAAACAATATATTA
1 TTAAAACAATATATTA
14029055 TAAATTTTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
39 2 0.04
40 50 0.96
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36
Consensus pattern (40 bp):
TTAAAACAATATATTAAAAAAGTATAATTATAACAGTATA
Found at i:14029010 original size:27 final size:27
Alignment explanation
Indices: 14028927--14029079 Score: 115
Period size: 27 Copynumber: 5.9 Consensus size: 27
14028917 AAATTAAATG
* * **
14028927 TATATTTATAACAGTATATTAAAA-TT
1 TATAATTAAAACAGTATATTAAAACAA
* *
14028953 TAAAATTTAAAACATTATATTAAAACAA
1 TATAA-TTAAAACAGTATATTAAAACAA
*
14028981 TATAATTATAACAGTATATTAAAACAA
1 TATAATTAAAACAGTATATTAAAACAA
* * * *
14029008 TAT-ATTAAAAAAGTATATTTATAATAG
1 TATAATTAAAACAGTATA-TTAAAACAA
* *
14029035 TAT-ATTAAAACAATATATT-ATA-AA
1 TATAATTAAAACAGTATATTAAAACAA
14029059 T-T--TTAAAACAGTATATTAAAA
1 TATAATTAAAACAGTATATTAAAA
14029080 TAGTATATTA
Statistics
Matches: 102, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
22 14 0.14
23 3 0.03
24 2 0.02
25 1 0.01
26 17 0.17
27 61 0.60
28 4 0.04
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (27 bp):
TATAATTAAAACAGTATATTAAAACAA
Found at i:14029067 original size:22 final size:21
Alignment explanation
Indices: 14029039--14029080 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
14029029 TAATAGTATA
14029039 TTAAAACAATATATTATAAATT
1 TTAAAACAATATATTA-AAATT
*
14029061 TTAAAACAGTATATTAAAAT
1 TTAAAACAATATATTAAAAT
14029081 AGTATATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (21 bp):
TTAAAACAATATATTAAAATT
Found at i:14029199 original size:14 final size:14
Alignment explanation
Indices: 14029180--14029215 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
14029170 TTTATGTTAA
14029180 AAAATAAAGTATAG
1 AAAATAAAGTATAG
14029194 AAAATAAAGTATAG
1 AAAATAAAGTATAG
*
14029208 AAACTAAA
1 AAAATAAA
14029216 ATTTAATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.67, C:0.03, G:0.11, T:0.19
Consensus pattern (14 bp):
AAAATAAAGTATAG
Found at i:14029236 original size:15 final size:15
Alignment explanation
Indices: 14029212--14029251 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
14029202 GTATAGAAAC
*
14029212 TAAAATTTAATGTGT
1 TAAAAATTAATGTGT
14029227 TAAAAATTAATGTGT
1 TAAAAATTAATGTGT
*
14029242 TACAAATTAA
1 TAAAAATTAA
14029252 ATGTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (15 bp):
TAAAAATTAATGTGT
Found at i:14029305 original size:13 final size:13
Alignment explanation
Indices: 14029287--14029417 Score: 117
Period size: 13 Copynumber: 10.2 Consensus size: 13
14029277 AAGTTAAAAG
*
14029287 TTAAAACATTATA
1 TTAAAACAGTATA
*
14029300 TTAAAACAATATAA
1 TTAAAACAGTAT-A
* *
14029314 TTATAATAGTATA
1 TTAAAACAGTATA
*
14029327 TTAAAACAATATA
1 TTAAAACAGTATA
* *
14029340 TTAAAAAAGTAAA
1 TTAAAACAGTATA
* *
14029353 TTTATAATAGTATA
1 -TTAAAACAGTATA
14029367 TTAAAACAGTATA
1 TTAAAACAGTATA
*
14029380 TTACAA-A-T-T-
1 TTAAAACAGTATA
*
14029389 TTATAACAGTATA
1 TTAAAACAGTATA
14029402 TTAAAACAGTATA
1 TTAAAACAGTATA
14029415 TTA
1 TTA
14029418 CATTAAAAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
9 5 0.05
10 2 0.02
11 2 0.02
12 2 0.02
13 63 0.67
14 20 0.21
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (13 bp):
TTAAAACAGTATA
Found at i:14029332 original size:40 final size:40
Alignment explanation
Indices: 14029287--14029417 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
14029277 AAGTTAAAAG
*
14029287 TTAAAACATTATATTAAAACAATATAATTATAATAGTATA
1 TTAAAACAGTATATTAAAACAATATAATTATAATAGTATA
*
14029327 TTAAAACAATATATTAAAA-AAGTA-AATTTATAATAGTATA
1 TTAAAACAGTATATTAAAACAA-TATAA-TTATAATAGTATA
* *
14029367 TTAAAACAGTATATT---ACAA-AT-TTTATAACAGTATA
1 TTAAAACAGTATATTAAAACAATATAATTATAATAGTATA
14029402 TTAAAACAGTATATTA
1 TTAAAACAGTATATTA
14029418 CATTAAAAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
35 27 0.33
36 1 0.01
37 1 0.01
38 2 0.02
39 4 0.05
40 47 0.57
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (40 bp):
TTAAAACAGTATATTAAAACAATATAATTATAATAGTATA
Found at i:14029504 original size:328 final size:328
Alignment explanation
Indices: 14028905--14029531 Score: 1119
Period size: 328 Copynumber: 1.9 Consensus size: 328
14028895 ACATCAACAC
* * *
14028905 TTAATGTGTTACAAATTAAATGTATATTTATAACAGTATATTAAAATTTAAAATTTAAAACATTA
1 TTAATGTGTTACAAATTAAATGTATATTTATAACAGTATACTAAAAGTTAAAAGTTAAAACATTA
*
14028970 TATTAAAACAATATAATTATAACAGTATATTAAAACAATATATTAAAAAAGTATATTTATAATAG
66 TATTAAAACAATATAATTATAACAGTATATTAAAACAATATATTAAAAAAGTAAATTTATAATAG
* *
14029035 TATATTAAAACAATATATTATAAATTTTAAAACAGTATATTAAAATAGTATATTACAGTAAAAAT
131 TATATTAAAACAATATATTACAAATTTTAAAACAGTATATTAAAACAGTATATTACAGTAAAAAT
14029100 TATTGTTTTAATAAAAAAATTAACAATATTAATTATTTAGTTAATAACATTATAAAAATATAAGC
196 TATTGTTTTAATAAAAAAATTAACAATATTAATTATTTAGTTAATAACATTATAAAAATATAAGC
*
14029165 ACCATTTTATGTTAAAAAATAAAGTATAGAAAATAAAGTATAGAAACTAAAATTTAATGTGTTAA
261 ACCAATTTATGTTAAAAAATAAAGTATAGAAAATAAAGTATAGAAACTAAAATTTAATGTGTTAA
14029230 AAA
326 AAA
*
14029233 TTAATGTGTTACAAATTAAATGTATATTTATAACAGTATACTAGAAGTTAAAAGTTAAAACATTA
1 TTAATGTGTTACAAATTAAATGTATATTTATAACAGTATACTAAAAGTTAAAAGTTAAAACATTA
*
14029298 TATTAAAACAATATAATTATAATAGTATATTAAAACAATATATTAAAAAAGTAAATTTATAATAG
66 TATTAAAACAATATAATTATAACAGTATATTAAAACAATATATTAAAAAAGTAAATTTATAATAG
* * *
14029363 TATATTAAAACAGTATATTACAAATTTTATAACAGTATATTAAAACAGTATATTACATTAAAAAT
131 TATATTAAAACAATATATTACAAATTTTAAAACAGTATATTAAAACAGTATATTACAGTAAAAAT
*
14029428 TATTGTTTTAATCAAAAAATTAACAATATTAATTATTTAGTTAATAACATTATAAAAATATAAGC
196 TATTGTTTTAATAAAAAAATTAACAATATTAATTATTTAGTTAATAACATTATAAAAATATAAGC
* *
14029493 ACCAATTTATGTTTAAAAATAAAGTATAGAAACTAAAGT
261 ACCAATTTATGTTAAAAAATAAAGTATAGAAAATAAAGT
14029532 TTAATCATTT
Statistics
Matches: 284, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
328 284 1.00
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (328 bp):
TTAATGTGTTACAAATTAAATGTATATTTATAACAGTATACTAAAAGTTAAAAGTTAAAACATTA
TATTAAAACAATATAATTATAACAGTATATTAAAACAATATATTAAAAAAGTAAATTTATAATAG
TATATTAAAACAATATATTACAAATTTTAAAACAGTATATTAAAACAGTATATTACAGTAAAAAT
TATTGTTTTAATAAAAAAATTAACAATATTAATTATTTAGTTAATAACATTATAAAAATATAAGC
ACCAATTTATGTTAAAAAATAAAGTATAGAAAATAAAGTATAGAAACTAAAATTTAATGTGTTAA
AAA
Found at i:14030710 original size:29 final size:30
Alignment explanation
Indices: 14030678--14030745 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
14030668 CACAACCATT
* *
14030678 AACAACATTAACAGC-AAAATCCAAATCAG
1 AACAACATTAACAGCAAAAATCAAAATCAC
*
14030707 AACACCATTAACAGCAAAAATCAAAATCAC
1 AACAACATTAACAGCAAAAATCAAAATCAC
14030737 AACCAACAT
1 AA-CAACAT
14030746 CAAAAAGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 14 0.42
30 14 0.42
31 5 0.15
ACGTcount: A:0.56, C:0.26, G:0.04, T:0.13
Consensus pattern (30 bp):
AACAACATTAACAGCAAAAATCAAAATCAC
Found at i:14032543 original size:37 final size:37
Alignment explanation
Indices: 14032499--14032664 Score: 296
Period size: 37 Copynumber: 4.5 Consensus size: 37
14032489 CACTTGTCCC
*
14032499 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14032536 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14032573 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
**
14032610 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCCCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
*
14032647 TTATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
14032665 TAAAGCTATC
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (37 bp):
TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
Found at i:14032681 original size:46 final size:46
Alignment explanation
Indices: 14032628--14032896 Score: 315
Period size: 46 Copynumber: 5.6 Consensus size: 46
14032618 TAAGTGTAGC
* * *
14032628 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14032674 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14032720 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCT-GAAGCTAT
* *
14032772 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14032818 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14032870 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14032897 AGTACTCAAA
Statistics
Matches: 193, Mismatches: 16, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
46 108 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 81 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:14032747 original size:52 final size:52
Alignment explanation
Indices: 14032671--14032890 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
14032661 TAGCTAAAGC
* *
14032671 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
14032724 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGTCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14032776 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14032822 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
14032874 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
14032891 ATCAGAAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 42 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:14032793 original size:98 final size:98
Alignment explanation
Indices: 14032628--14032896 Score: 441
Period size: 98 Copynumber: 2.7 Consensus size: 98
14032618 TAAGTGTAGC
* * * *
14032628 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
14032693 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
14032727 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTATCACTTATCACTTTGTCACT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTATCACTTTGTCACT
*
14032791 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14032825 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
14032890 GATCAGA
66 GATCAGA
14032897 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
97 1 0.01
98 148 0.93
99 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14036087 original size:49 final size:50
Alignment explanation
Indices: 14036032--14036235 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
14036022 TTCGTTTTCT
*
14036032 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
14036081 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
14036130 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
14036188 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
14036236 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:14036202 original size:58 final size:59
Alignment explanation
Indices: 14036116--14036234 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
14036106 TACACGAAAT
14036116 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
14036174 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
14036233 CA
1 CA
14036235 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:14036215 original size:28 final size:28
Alignment explanation
Indices: 14036125--14036215 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
14036115 TCACATATCA
14036125 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
14036153 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
14036183 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
14036211 CTTAC
1 CTTAC
14036216 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:14037549 original size:37 final size:37
Alignment explanation
Indices: 14037505--14037670 Score: 296
Period size: 37 Copynumber: 4.5 Consensus size: 37
14037495 CACTTGTCCC
*
14037505 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14037542 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14037579 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
**
14037616 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCCCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
*
14037653 TTATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
14037671 TAAAGCTATC
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (37 bp):
TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
Found at i:14037687 original size:46 final size:46
Alignment explanation
Indices: 14037634--14037902 Score: 315
Period size: 46 Copynumber: 5.6 Consensus size: 46
14037624 TAAGTGTAGC
* * *
14037634 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14037680 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14037726 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCT-GAAGCTAT
* *
14037778 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14037824 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14037876 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14037903 AGTACTCAAA
Statistics
Matches: 193, Mismatches: 16, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
46 108 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 81 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:14037753 original size:52 final size:52
Alignment explanation
Indices: 14037677--14037896 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
14037667 TAGCTAAAGC
* *
14037677 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
14037730 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGTCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14037782 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14037828 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
14037880 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
14037897 ATCAGAAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 42 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:14037799 original size:98 final size:98
Alignment explanation
Indices: 14037634--14037902 Score: 441
Period size: 98 Copynumber: 2.7 Consensus size: 98
14037624 TAAGTGTAGC
* * * *
14037634 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
14037699 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
14037733 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTATCACTTATCACTTTGTCACT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTATCACTTTGTCACT
*
14037797 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14037831 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
14037896 GATCAGA
66 GATCAGA
14037903 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
97 1 0.01
98 148 0.93
99 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14041088 original size:49 final size:50
Alignment explanation
Indices: 14041033--14041236 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
14041023 TTCGTTTTCT
*
14041033 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
14041082 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
14041131 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
14041189 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
14041237 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:14041203 original size:58 final size:59
Alignment explanation
Indices: 14041117--14041235 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
14041107 TACACGAAAT
14041117 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
14041175 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
14041234 CA
1 CA
14041236 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:14041216 original size:28 final size:28
Alignment explanation
Indices: 14041126--14041216 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
14041116 TCACATATCA
14041126 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
14041154 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
14041184 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
14041212 CTTAC
1 CTTAC
14041217 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:14042550 original size:37 final size:37
Alignment explanation
Indices: 14042506--14042671 Score: 296
Period size: 37 Copynumber: 4.5 Consensus size: 37
14042496 CACTTGTCCC
*
14042506 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14042543 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
14042580 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
**
14042617 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCCCT
1 TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
*
14042654 TTATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
14042672 TAAAGCTATC
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (37 bp):
TGATCAGATAAGTGTAGCCACTTATCACTTTGTTTCT
Found at i:14042688 original size:46 final size:46
Alignment explanation
Indices: 14042635--14042903 Score: 315
Period size: 46 Copynumber: 5.6 Consensus size: 46
14042625 TAAGTGTAGC
* * *
14042635 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14042681 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14042727 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCT-GAAGCTAT
* *
14042779 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
14042825 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
14042877 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14042904 AGTACTCAAA
Statistics
Matches: 193, Mismatches: 16, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
46 108 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 81 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:14042754 original size:52 final size:52
Alignment explanation
Indices: 14042678--14042897 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
14042668 TAGCTAAAGC
* *
14042678 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
14042731 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGTCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14042783 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14042829 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
14042881 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
14042898 ATCAGAAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 42 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:14042800 original size:98 final size:98
Alignment explanation
Indices: 14042635--14042903 Score: 441
Period size: 98 Copynumber: 2.7 Consensus size: 98
14042625 TAAGTGTAGC
* * * *
14042635 CACTTATCACTTTGTCCCTTTATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
14042700 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
14042734 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAG-TCGAAGCTATCACTTATCACTTTGTCACT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCT-AAAGCTATCACTTATCACTTTGTCACT
*
14042798 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14042832 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
14042897 GATCAGA
66 GATCAGA
14042904 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
97 1 0.01
98 148 0.93
99 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14045592 original size:15 final size:16
Alignment explanation
Indices: 14045574--14045603 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14045564 CTTCCTCATG
14045574 ATTTTCTTT-TTTATC
1 ATTTTCTTTGTTTATC
14045589 ATTTTCTTTGTTTAT
1 ATTTTCTTTGTTTAT
14045604 TCCCACCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.73
Consensus pattern (16 bp):
ATTTTCTTTGTTTATC
Found at i:14045618 original size:13 final size:13
Alignment explanation
Indices: 14045600--14045625 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14045590 TTTTCTTTGT
14045600 TTATTCCCACCGG
1 TTATTCCCACCGG
14045613 TTATTCCCACCGG
1 TTATTCCCACCGG
14045626 CCGAATGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.15, T:0.31
Consensus pattern (13 bp):
TTATTCCCACCGG
Found at i:14046635 original size:54 final size:54
Alignment explanation
Indices: 14046571--14046678 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
14046561 GATTACATAG
14046571 ACATGTACTGTGTTTGATAAATCTGTGTAGGCACTTTGACTGAGCAAAAATGTT
1 ACATGTACTGTGTTTGATAAATCTGTGTAGGCACTTTGACTGAGCAAAAATGTT
14046625 ACATGTACTGTGTTTGATAAATCTGTGTAGGCACTTTGACTGAGCAAAAATGTT
1 ACATGTACTGTGTTTGATAAATCTGTGTAGGCACTTTGACTGAGCAAAAATGTT
14046679 GATGGATTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (54 bp):
ACATGTACTGTGTTTGATAAATCTGTGTAGGCACTTTGACTGAGCAAAAATGTT
Found at i:14047193 original size:25 final size:25
Alignment explanation
Indices: 14047145--14047193 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14047135 TTGCAGTGGC
* *
14047145 TGATTTCTCTTTTGTTAGCTCTGAT
1 TGATTTCTCTTTTGTCAGCGCTGAT
14047170 TGATTTCTCTTTTG-CAGCGGCTGA
1 TGATTTCTCTTTTGTCAGC-GCTGA
14047194 CAATGCCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.12, C:0.18, G:0.20, T:0.49
Consensus pattern (25 bp):
TGATTTCTCTTTTGTCAGCGCTGAT
Found at i:14047762 original size:57 final size:56
Alignment explanation
Indices: 14047690--14047896 Score: 222
Period size: 57 Copynumber: 3.5 Consensus size: 56
14047680 TTATTAGTTG
14047690 AGAAAA-TTTTAACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTAGT
1 AGAAAATTTTTAACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTA-T
* * *
14047746 TG-TAATGTTTTAACAATATGATAAACAATCTAAATAAAGGGTAATTGTATTATTAT
1 AGAAAAT-TTTTAACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTAT
* *
14047802 AGAAAATTTGTACAATATGATAAACAATACGATAAACAATCTAAATAAAGGGTAATTATAATATT
1 AGAAAA--T-T----T-T--T-AACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATT
14047867 AT
55 AT
*
14047869 AGAAAATTTGT-ACAATATGATAAACAAT
1 AGAAAATTTTTAACAATATGATAAACAAT
14047897 ATGATAAACC
Statistics
Matches: 128, Mismatches: 10, Indels: 27
0.78 0.06 0.16
Matches are distributed among these distances:
55 18 0.14
56 3 0.02
57 50 0.39
59 3 0.02
60 1 0.01
63 1 0.01
64 2 0.02
65 1 0.01
66 1 0.01
67 48 0.38
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.33
Consensus pattern (56 bp):
AGAAAATTTTTAACAATATGATAAACAATCTAAATAAAGGGTAATTATATTATTAT
Found at i:14047829 original size:67 final size:67
Alignment explanation
Indices: 14047757--14047905 Score: 271
Period size: 67 Copynumber: 2.2 Consensus size: 67
14047747 GTAATGTTTT
* *
14047757 AACAATATGATAAACAATCTAAATAAAGGGTAATTGTATTATTATAGAAAATTTGTACAATATGA
1 AACAATATGATAAACAATCTAAATAAAGGGTAATTATAATATTATAGAAAATTTGTACAATATGA
14047822 TA
66 TA
*
14047824 AACAATACGATAAACAATCTAAATAAAGGGTAATTATAATATTATAGAAAATTTGTACAATATGA
1 AACAATATGATAAACAATCTAAATAAAGGGTAATTATAATATTATAGAAAATTTGTACAATATGA
14047889 TA
66 TA
14047891 AACAATATGATAAAC
1 AACAATATGATAAAC
14047906 CTTGTATACA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 78 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (67 bp):
AACAATATGATAAACAATCTAAATAAAGGGTAATTATAATATTATAGAAAATTTGTACAATATGA
TA
Found at i:14047897 original size:12 final size:12
Alignment explanation
Indices: 14047880--14047905 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14047870 GAAAATTTGT
14047880 ACAATATGATAA
1 ACAATATGATAA
14047892 ACAATATGATAA
1 ACAATATGATAA
14047904 AC
1 AC
14047906 CTTGTATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.23
Consensus pattern (12 bp):
ACAATATGATAA
Found at i:14051569 original size:15 final size:15
Alignment explanation
Indices: 14051549--14051623 Score: 70
Period size: 15 Copynumber: 5.3 Consensus size: 15
14051539 AATAAGAATT
14051549 TTATTAAATTATATA
1 TTATTAAATTATATA
14051564 TTATTAAATTATAT-
1 TTATTAAATTATATA
* *
14051578 TTAAT-AATAAT-TA
1 TTATTAAATTATATA
*
14051591 TT-TTAAATTATATT
1 TTATTAAATTATATA
*
14051605 TTA-TAGTATTATATA
1 TTATTA-AATTATATA
14051620 TTAT
1 TTAT
14051624 GATTTTATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
12 2 0.04
13 12 0.26
14 9 0.19
15 24 0.51
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (15 bp):
TTATTAAATTATATA
Found at i:14051616 original size:41 final size:41
Alignment explanation
Indices: 14051539--14051709 Score: 112
Period size: 41 Copynumber: 4.2 Consensus size: 41
14051529 TTCATATAAG
14051539 AATAAGAATTTTATTAAATTATATATTATTAAATTATATTT
1 AATAAGAATTTTATTAAATTATATATTATTAAATTATATTT
* * *
14051580 AATAATAATTATT-TTAAATTATATTTTA-TAGTATTATATATT
1 AATAAGAATT-TTATTAAATTATATATTATTA-AATTATAT-TT
* *
14051622 -AT--G-ATTTTATT--AGTAAAT-TTATATAAGA--ATATTT
1 AATAAGAATTTTATTAAATTATATATTAT-TAA-ATTATATTT
* * *
14051656 ATTAACAATTTTATTAAATTATATATTTTTATTAAATTATATGT
1 AATAAGAATTTTATTAAATTATATA---TTATTAAATTATATTT
*
14051700 AATAACAATT
1 AATAAGAATT
14051710 ATGTTAAAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 35
0.67 0.09 0.24
Matches are distributed among these distances:
34 2 0.02
35 8 0.08
36 5 0.05
37 5 0.05
38 13 0.13
40 7 0.07
41 32 0.33
42 5 0.05
43 3 0.03
44 18 0.18
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (41 bp):
AATAAGAATTTTATTAAATTATATATTATTAAATTATATTT
Found at i:14051617 original size:107 final size:112
Alignment explanation
Indices: 14051458--14051717 Score: 345
Period size: 107 Copynumber: 2.3 Consensus size: 112
14051448 AATAAAGTAG
14051458 ATTA-TAAATTATATTTAATAATAATTA-TTTAAATTATATTTTATAGTATTATATATTATGA-T
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATT
*
14051520 T-GTAGTAAATTCATATAAG-A-A-TAAGAATTTTATTAAATTATAT
66 TAGTAGTAAATTCATATAAGAATATTAACAATTTTATTAAATTATAT
14051563 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATT
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGA-T
* *
14051628 TTATTAGTAAATTTATATAAGAATATTTATTAACAATTTTATTAAATTATAT
65 TTAGTAGTAAATTCATATAAG-A-A--TATTAACAATTTTATTAAATTATAT
* * *
14051680 ATTTTTATTAAATTATATGTAATAACAATTATGTTAAA
1 A---TTATTAAATTATATTTAATAATAATTATTTTAAA
14051718 ATATGATTAA
Statistics
Matches: 134, Mismatches: 6, Indels: 15
0.86 0.04 0.10
Matches are distributed among these distances:
105 4 0.03
106 23 0.17
107 34 0.25
109 2 0.01
110 16 0.12
113 1 0.01
116 1 0.01
117 22 0.16
120 31 0.23
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (112 bp):
ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATT
TAGTAGTAAATTCATATAAGAATATTAACAATTTTATTAAATTATAT
Found at i:14051895 original size:39 final size:44
Alignment explanation
Indices: 14051846--14051944 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 44
14051836 TCTTTATGCT
* *
14051846 ATTACACCTCTATT-C-T-ATTCAACCAAACACAAGAA-TAC-C
1 ATTACGCCTCTATTCCATAATTCAACCAAACAAAAGAATTACTC
*
14051885 ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTACTT
1 ATTACGCCTCTATTCCA-TA-ATTCAACCAAACAAAAGAATTACTC
14051931 ATTACGCCTCTATT
1 ATTACGCCTCTATT
14051945 TCATTACGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 13 0.26
40 1 0.02
42 1 0.02
44 18 0.36
45 3 0.06
46 14 0.28
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.30
Consensus pattern (44 bp):
ATTACGCCTCTATTCCATAATTCAACCAAACAAAAGAATTACTC
Found at i:14051912 original size:44 final size:46
Alignment explanation
Indices: 14051862--14051951 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
14051852 CCTCTATTCT
*
14051862 ATTCAACCAAACACAAGAA-TAC-CATTACGCCTCTATTCCATTAC
1 ATTCAACCAAACAAAAGAATTACTCATTACGCCTCTATTCCATTAC
* *
14051906 ATTCAACCAAACAAAAGAATTACTTATTACGCCTCTATTTCATTAC
1 ATTCAACCAAACAAAAGAATTACTCATTACGCCTCTATTCCATTAC
14051952 GCCTCTATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.44
45 3 0.07
46 20 0.49
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.29
Consensus pattern (46 bp):
ATTCAACCAAACAAAAGAATTACTCATTACGCCTCTATTCCATTAC
Found at i:14051952 original size:16 final size:16
Alignment explanation
Indices: 14051931--14051967 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
14051921 AGAATTACTT
*
14051931 ATTACGCCTCTATTTC
1 ATTACGCCTCTATTCC
14051947 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
14051963 ATTAC
1 ATTAC
14051968 AACGAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:14062906 original size:47 final size:47
Alignment explanation
Indices: 14062837--14062931 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
14062827 AATCTTTGTC
14062837 TCCGTGTTTAAGTAAATAAGGCTAGCGGTGGTCTTTCTGAACACCTT
1 TCCGTGTTTAAGTAAATAAGGCTAGCGGTGGTCTTTCTGAACACCTT
*
14062884 TCCGTGTTTAAGTAAATAAGGCTAGTGGTGGTCTTTCTGAACACCTT
1 TCCGTGTTTAAGTAAATAAGGCTAGCGGTGGTCTTTCTGAACACCTT
14062931 T
1 T
14062932 ACGTTTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (47 bp):
TCCGTGTTTAAGTAAATAAGGCTAGCGGTGGTCTTTCTGAACACCTT
Found at i:14064118 original size:15 final size:16
Alignment explanation
Indices: 14064085--14064118 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
14064075 ATAAAGAACT
*
14064085 TTTGTTTTGATAATGC
1 TTTGTTTTGATAATAC
14064101 TTTGTTTT-ATAATAC
1 TTTGTTTTGATAATAC
14064116 TTT
1 TTT
14064119 TATTAAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.62
Consensus pattern (16 bp):
TTTGTTTTGATAATAC
Found at i:14065144 original size:12 final size:12
Alignment explanation
Indices: 14065129--14065162 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14065119 ATTATTAATA
14065129 AAAAATAAAAAC
1 AAAAATAAAAAC
*
14065141 AAAAACAAAAAC
1 AAAAATAAAAAC
14065153 AAAAAGTAAA
1 AAAAA-TAAA
14065163 TATTATTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 16 0.84
13 3 0.16
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (12 bp):
AAAAATAAAAAC
Found at i:14065257 original size:18 final size:18
Alignment explanation
Indices: 14065234--14065272 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14065224 ATGAGTTTTT
14065234 AAATTACAA-AAATTTTAA
1 AAATTA-AATAAATTTTAA
*
14065252 AAATTAAATAATTTTTAA
1 AAATTAAATAAATTTTAA
14065270 AAA
1 AAA
14065273 AAATTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATTAAATAAATTTTAA
Found at i:14065271 original size:17 final size:18
Alignment explanation
Indices: 14065229--14065271 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
14065219 TCTACATGAG
14065229 TTTTT-AAATTACAAAAA
1 TTTTTAAAATTACAAAAA
* *
14065246 TTTTAAAAATTA-AATAA
1 TTTTTAAAATTACAAAAA
14065263 TTTTTAAAA
1 TTTTTAAAA
14065272 AAAATTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTTTAAAATTACAAAAA
Found at i:14078775 original size:26 final size:26
Alignment explanation
Indices: 14078745--14078797 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14078735 GCTTTAACTC
14078745 TATCTATA-ATTAAATATGCAGGGATA
1 TATCTATATA-TAAATATGCAGGGATA
*
14078771 TATCTATATATAAATGTGCAGGGATA
1 TATCTATATATAAATATGCAGGGATA
14078797 T
1 T
14078798 GCTAAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.36
Consensus pattern (26 bp):
TATCTATATATAAATATGCAGGGATA
Found at i:14087033 original size:28 final size:28
Alignment explanation
Indices: 14086993--14087048 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
14086983 GGCTACTTAG
14086993 CCTTATCTCTCCATGATTGGAACCACCA
1 CCTTATCTCTCCATGATTGGAACCACCA
14087021 CCTTATCTCTCCATGATTGGAACCACCA
1 CCTTATCTCTCCATGATTGGAACCACCA
14087049 AGTAATACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.11, T:0.29
Consensus pattern (28 bp):
CCTTATCTCTCCATGATTGGAACCACCA
Found at i:14091239 original size:7 final size:7
Alignment explanation
Indices: 14091227--14091263 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
14091217 TAATGTCGAC
14091227 AAAAATT
1 AAAAATT
14091234 AAAAATT
1 AAAAATT
14091241 AAAAATT
1 AAAAATT
14091248 AAAAATT
1 AAAAATT
14091255 AAAAATT
1 AAAAATT
14091262 AA
1 AA
14091264 TAAACGAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:14094001 original size:17 final size:17
Alignment explanation
Indices: 14093976--14094012 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
14093966 TTTTTAATTT
*
14093976 TTTTTAAAAATTAT-AA
1 TTTTTAAAAAATATAAA
14093992 TTTTTAAAAAATATAAA
1 TTTTTAAAAAATATAAA
14094009 TTTT
1 TTTT
14094013 GGAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTTTTAAAAAATATAAA
Found at i:14094033 original size:20 final size:21
Alignment explanation
Indices: 14093990--14094057 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 21
14093980 TAAAAATTAT
14093990 AATTTTTAAAAAATATAAATTTTGG
1 AATTTTT-AAAAAT-T--ATTTTGG
*
14094015 AATTTTTATAAA-TATTTT-G
1 AATTTTTAAAAATTATTTTGG
*
14094034 AA-TTTTAAAAATTATTTTGA
1 AATTTTTAAAAATTATTTTGG
14094054 AATT
1 AATT
14094058 ATTTTTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 9 0.24
20 7 0.19
21 1 0.03
22 1 0.03
24 4 0.11
25 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (21 bp):
AATTTTTAAAAATTATTTTGG
Found at i:14094040 original size:18 final size:19
Alignment explanation
Indices: 14094003--14094054 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
14093993 TTTTAAAAAA
*
14094003 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
14094021 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
14094039 TAAAAATTATTTTGAA
1 TATAAA-TATTTTGAA
14094055 ATTATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:14103359 original size:31 final size:32
Alignment explanation
Indices: 14103324--14103387 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
14103314 GATTCTTTGA
* **
14103324 GGAAAAG-CTATATCATGTTATTTTCTAATTT
1 GGAAAAGACAATATCATGTTATTCCCTAATTT
14103355 GGAAAAGAACAATATCATGTTATTCCCTAATTT
1 GGAAAAG-ACAATATCATGTTATTCCCTAATTT
14103388 TTTGAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 7 0.25
33 21 0.75
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (32 bp):
GGAAAAGACAATATCATGTTATTCCCTAATTT
Found at i:14106432 original size:22 final size:24
Alignment explanation
Indices: 14106405--14106449 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14106395 AAGTGTTAAT
14106405 AAAATT-T-AGATATTTTTATAAA
1 AAAATTATCAGATATTTTTATAAA
14106427 AAAATTATCAGATATTTTTATAA
1 AAAATTATCAGATATTTTTATAA
14106450 TCTATTGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.29
23 1 0.05
24 14 0.67
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (24 bp):
AAAATTATCAGATATTTTTATAAA
Found at i:14108558 original size:64 final size:64
Alignment explanation
Indices: 14108457--14108584 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
14108447 TCCAATTTCA
*
14108457 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAAGGAGAATTAGAATTTTAG
1 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
* **
14108521 ATTTGGATTGAAGTTATGGAAATAGGTTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
1 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
14108585 CCACAATTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (64 bp):
ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
Found at i:14116632 original size:15 final size:15
Alignment explanation
Indices: 14116612--14116642 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14116602 CAAACATCAC
14116612 TCATAGCAACTTTAT
1 TCATAGCAACTTTAT
*
14116627 TCATAGCAATTTTAT
1 TCATAGCAACTTTAT
14116642 T
1 T
14116643 GAATTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (15 bp):
TCATAGCAACTTTAT
Found at i:14117713 original size:15 final size:15
Alignment explanation
Indices: 14117693--14117721 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14117683 ATGGAAAGCA
14117693 ATTTTGACCATAGCT
1 ATTTTGACCATAGCT
14117708 ATTTTGACCATAGC
1 ATTTTGACCATAGC
14117722 CATACTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (15 bp):
ATTTTGACCATAGCT
Found at i:14121107 original size:52 final size:52
Alignment explanation
Indices: 14121036--14121383 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
14121026 ATCAAGTGAC
* **
14121036 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
14121088 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
14121140 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
14121186 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
14121238 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
14121284 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
14121336 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
14121384 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:14121158 original size:98 final size:98
Alignment explanation
Indices: 14121088--14121394 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
14121078 TGACAAGTGG
* *
14121088 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
14121153 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
14121186 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
14121251 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
14121284 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
14121349 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
14121382 AAAGTGATAAGTG
1 AAAGTGATAAGTG
14121395 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:14121242 original size:150 final size:144
Alignment explanation
Indices: 14121022--14121383 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
14121012 TTTGAGTACT
14121022 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
14121087 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
14121152 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
14121172 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
14121237 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
14121302 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
14121316 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
14121381 CAA
60 CAA
14121384 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:14121402 original size:37 final size:37
Alignment explanation
Indices: 14121358--14121577 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
14121348 GATAGCTTTA
*
14121358 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14121395 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
14121432 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14121469 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
14121506 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
14121543 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14121578 ATCATACGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 161 0.91
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:14122906 original size:58 final size:58
Alignment explanation
Indices: 14122829--14122996 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
14122819 CATGTGAACA
14122829 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
14122888 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
14122944 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
14122995 TG
1 TG
14122997 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:14122938 original size:28 final size:28
Alignment explanation
Indices: 14122848--14122938 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
14122838 GTGATTCCGT
14122848 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
14122876 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
14122905 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
14122934 GTAAG
1 GTAAG
14122939 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:14122961 original size:49 final size:49
Alignment explanation
Indices: 14122889--14123031 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
14122879 AGTGATATGT
* *
14122889 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
14122938 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
14122987 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
14123032 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:14126240 original size:52 final size:52
Alignment explanation
Indices: 14126169--14126516 Score: 459
Period size: 52 Copynumber: 6.9 Consensus size: 52
14126159 ATCAAGTGAC
* * **
14126169 AAAGAGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
14126221 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
14126273 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAATTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
14126319 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
14126371 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
14126417 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
14126469 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
14126517 AGTGATAAGT
Statistics
Matches: 263, Mismatches: 21, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
46 85 0.32
52 178 0.68
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:14126375 original size:150 final size:144
Alignment explanation
Indices: 14126155--14126516 Score: 553
Period size: 150 Copynumber: 2.4 Consensus size: 144
14126145 TTTGAGTACT
*
14126155 TCTGATCAAGTGACAAAGAGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
14126220 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
14126285 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
*
14126305 TCTGATCAATTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
14126370 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
14126435 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
14126449 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
14126514 CAA
60 CAA
14126517 AGTGATAAGT
Statistics
Matches: 198, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
144 43 0.22
150 155 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Done.