Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 48 of 199
Found at i:14126517 original size:98 final size:98
Alignment explanation
Indices: 14126161--14126527 Score: 509
Period size: 98 Copynumber: 3.7 Consensus size: 98
14126151 TACTTCTGAT
* ** *
14126161 CAAGTGACAAAGAGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGAC------AAAGT
* *
14126226 GATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
59 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * * *
14126266 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAATTGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* **
14126331 GGTAGCTTTAGCTACACTTATCTGATCAAGTGA
66 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
14126364 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
14126429 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
66 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * *
14126462 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
14126527 G
66 G
14126528 GCTACACTTA
Statistics
Matches: 239, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
98 194 0.81
104 39 0.16
105 6 0.03
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
GATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:14126535 original size:37 final size:37
Alignment explanation
Indices: 14126491--14126636 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
14126481 GATAGCTTTA
*
14126491 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14126528 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
14126565 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
14126602 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14126637 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:14131238 original size:9 final size:9
Alignment explanation
Indices: 14131222--14131282 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
14131212 GGTATTTTTC
14131222 GGTAATTCG
1 GGTAATTCG
*
14131231 GTTAATTCG
1 GGTAATTCG
*
14131240 GTTAATTCG
1 GGTAATTCG
*
14131249 GGTAATTTG
1 GGTAATTCG
14131258 GGTAATTCG
1 GGTAATTCG
14131267 GGTAATTCG
1 GGTAATTCG
14131276 GGTAATT
1 GGTAATT
14131283 TTTAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.23, C:0.08, G:0.30, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:14132233 original size:17 final size:17
Alignment explanation
Indices: 14132211--14132261 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
14132201 AGCAAATACT
14132211 TATTTTCGTAATTAATC
1 TATTTTCGTAATTAATC
*
14132228 TATTTTC--CA-TAA-C
1 TATTTTCGTAATTAATC
14132241 T-TTTTCGTAATTAAT-
1 TATTTTCGTAATTAATC
14132256 TATTTT
1 TATTTT
14132262 TAAATTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 11
0.68 0.05 0.28
Matches are distributed among these distances:
12 5 0.19
13 2 0.07
14 4 0.15
15 5 0.19
16 4 0.15
17 7 0.26
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.57
Consensus pattern (17 bp):
TATTTTCGTAATTAATC
Found at i:14133527 original size:148 final size:150
Alignment explanation
Indices: 14133227--14133517 Score: 421
Period size: 149 Copynumber: 2.0 Consensus size: 150
14133217 AAGTTTTGAT
* *
14133227 TTTTTTTAAAAAAAATAGAAAGTTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAA
1 TTTTTTTAAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAA
14133292 TGGAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTG
66 TGGAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTG
14133357 ATTTTTAAGAAAAATAACGA
131 ATTTTTAAGAAAAATAACGA
* * * *
14133377 TTTTTTT-AAAAAAGGAGAAAATTTAGATTTTTAAAATAAAAATCT-ATTTTTTAGTCATTTTTA
1 TTTTTTTAAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCA-TTTCA
* * * *
14133440 A-GGAAAATTTTAAATTTTTTAAAATAAAGTTTTTA-TTTTT-TAACTATTTCGAAATAAAAGCT
65 ATGG-AAAGTTTAAA-ATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACT
*
14133502 TTGGTTTTTAAGAAAA
128 TTGATTTTTAAGAAAA
14133518 GTAGTGATTT
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
148 50 0.39
149 52 0.41
150 25 0.20
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (150 bp):
TTTTTTTAAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAA
TGGAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTG
ATTTTTAAGAAAAATAACGA
Found at i:14133536 original size:148 final size:148
Alignment explanation
Indices: 14133234--14133536 Score: 389
Period size: 148 Copynumber: 2.0 Consensus size: 148
14133224 GATTTTTTTT
* *
14133234 AAAAAAAATAGAAAGTTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAATGGAAAG
1 AAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAATGGAAAG
14133299 TTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGATTTTTA
66 TTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGATTTTTA
**
14133364 AGAAAAATAACGATTTTTT
131 AGAAAAATAACGA-TTTAA
* * * * *
14133383 TAAAAAAGGAGAAAATTTAGATTTTTAAAATAAAAATCT-ATTTTTTAGTCATTTTTAA-GGAAA
1 AAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCA-TTTCAATGG-AA
* * * * *
14133446 ATTTTAAATTTTTTAAAATAAAGTTTTTA-TTTTT-TAACTATTTCGAAATAAAAGCTTTGGTTT
64 AGTTTAAA-ATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGATTT
* **
14133509 TTAAGAAAAGTAGTGATTTAA
128 TTAAGAAAAATAACGATTTAA
14133530 AAAAAAA
1 AAAAAAA
14133537 TTTAATTTTA
Statistics
Matches: 133, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
147 9 0.07
148 54 0.41
149 52 0.39
150 18 0.14
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.42
Consensus pattern (148 bp):
AAAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAATGGAAAG
TTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGATTTTTA
AGAAAAATAACGATTTAA
Found at i:14134041 original size:24 final size:23
Alignment explanation
Indices: 14134014--14134068 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
14134004 CCCTTTCATT
14134014 TGTATTTATACATTATATATTTAA
1 TGTATTTATACATTATAT-TTTAA
* * *
14134038 TGTAAATTATGCATTTTATTTTAA
1 TGT-ATTTATACATTATATTTTAA
14134062 TGT-TTTA
1 TGTATTTA
14134069 CATTTATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 3 0.12
24 11 0.42
25 12 0.46
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (23 bp):
TGTATTTATACATTATATTTTAA
Found at i:14134871 original size:4 final size:4
Alignment explanation
Indices: 14134862--14134898 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
14134852 GTTCAACATT
14134862 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATT- ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
14134899 AATAATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
ATTA
Found at i:14140383 original size:21 final size:21
Alignment explanation
Indices: 14140358--14140399 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14140348 ATAAGGAGAC
*
14140358 TGTTAGCTTGTTAGTAGGAGT
1 TGTTAGCTTGTTAGTAAGAGT
*
14140379 TGTTAGTTTGTTAGTAAGAGT
1 TGTTAGCTTGTTAGTAAGAGT
14140400 AGGAAGCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.45
Consensus pattern (21 bp):
TGTTAGCTTGTTAGTAAGAGT
Found at i:14140418 original size:35 final size:35
Alignment explanation
Indices: 14140372--14140457 Score: 131
Period size: 35 Copynumber: 2.5 Consensus size: 35
14140362 AGCTTGTTAG
* *
14140372 TAGGAGTTGTTAGTTTGTTAGTAAGAGTAGGAAGC
1 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
14140407 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
1 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
14140442 TA--AGTTTGTTAGCTTG
1 TAGGAG-TTGTTAGCTTG
14140458 AGTCATGTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
33 2 0.04
34 11 0.23
35 35 0.73
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.36
Consensus pattern (35 bp):
TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
Found at i:14142182 original size:22 final size:22
Alignment explanation
Indices: 14142156--14142198 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14142146 CAACAAAAAC
14142156 CAAGAATAATCAACACACTATG
1 CAAGAATAATCAACACACTATG
14142178 CAAGAATAATCAACACACTAT
1 CAAGAATAATCAACACACTAT
14142199 ACATACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (22 bp):
CAAGAATAATCAACACACTATG
Found at i:14143291 original size:19 final size:21
Alignment explanation
Indices: 14143253--14143305 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
14143243 AATTATGATA
* *
14143253 ATTTTAAATTTTTTATAAA-T
1 ATTTTGAATTTTTGATAAATT
14143273 ATTTTGAATTTTTGA-AAATT
1 ATTTTGAATTTTTGATAAATT
*
14143293 ATTTTGATTTTTT
1 ATTTTGAATTTTT
14143306 TGTTGAAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
ATTTTGAATTTTTGATAAATT
Found at i:14150039 original size:29 final size:29
Alignment explanation
Indices: 14149997--14150054 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
14149987 TTCGAGGTCC
14149997 TATGTGGTGTATTTGGTTGGATGAGCTTA
1 TATGTGGTGTATTTGGTTGGATGAGCTTA
14150026 TATGTGGTGTATTTGGTTGGATGAGCTTA
1 TATGTGGTGTATTTGGTTGGATGAGCTTA
14150055 AACAACTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.45
Consensus pattern (29 bp):
TATGTGGTGTATTTGGTTGGATGAGCTTA
Found at i:14151805 original size:30 final size:30
Alignment explanation
Indices: 14151748--14151806 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
14151738 CACGGTCTGG
*
14151748 CACATGGCCATGTGTCCAGCCCATGTGGCT
1 CACACGGCCATGTGTCCAGCCCATGTGGCT
* * *
14151778 CACACGGCCGTGTGTCTAGCCCGTGTGGC
1 CACACGGCCATGTGTCCAGCCCATGTGGC
14151807 CCCTGAAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.22
Consensus pattern (30 bp):
CACACGGCCATGTGTCCAGCCCATGTGGCT
Found at i:14158725 original size:17 final size:17
Alignment explanation
Indices: 14158678--14158726 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 17
14158668 ATTACCTAAA
*
14158678 AATATATTT-ATTTAAT
1 AATATATTTAATTTTAT
**
14158694 AATA-A-TTAAAATTAT
1 AATATATTTAATTTTAT
14158709 AATATATTTAATTTTAT
1 AATATATTTAATTTTAT
14158726 A
1 A
14158727 TAAATTTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
14 2 0.08
15 9 0.36
16 5 0.20
17 9 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATATTTAATTTTAT
Found at i:14159999 original size:6 final size:6
Alignment explanation
Indices: 14159988--14160013 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14159978 AAATGGCCAC
14159988 CTGCTA CTGCTA CTGCTA CTGCTA CT
1 CTGCTA CTGCTA CTGCTA CTGCTA CT
14160014 TGGAACCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (6 bp):
CTGCTA
Found at i:14162434 original size:29 final size:28
Alignment explanation
Indices: 14162367--14162454 Score: 77
Period size: 30 Copynumber: 2.9 Consensus size: 28
14162357 GATAAATATC
*
14162367 AAAACTATACATTAAATTTGATTTAGTGTGT
1 AAAATTATACA-TAAATTTGATTT--TGTGT
** **
14162398 AATTTTATGTATAAACTTTGATTTTGTGT
1 AAAATTATACATAAA-TTTGATTTTGTGT
14162427 AAAATTATACATGAAATTTTGATTTTGT
1 AAAATTATACAT-AAA-TTTGATTTTGT
14162455 TTAATTCTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
29 13 0.29
30 18 0.40
31 14 0.31
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (28 bp):
AAAATTATACATAAATTTGATTTTGTGT
Found at i:14162619 original size:31 final size:29
Alignment explanation
Indices: 14162584--14162641 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
14162574 AAATGTATAC
14162584 AATTGAATCAAAATCAAAGTTTCATGTATGT
1 AATTGAA-CAAAATCAAAG-TTCATGTATGT
* *
14162615 AATTGCACCAAATCAAAGTTCATGTAT
1 AATTGAACAAAATCAAAGTTCATGTAT
14162642 CATATTGCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.36
30 10 0.40
31 6 0.24
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (29 bp):
AATTGAACAAAATCAAAGTTCATGTATGT
Found at i:14162648 original size:29 final size:30
Alignment explanation
Indices: 14162576--14162651 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
14162566 ATTTCTTTAA
* * *
14162576 ATGTATACAATTGAATCAAAATCAAAGTTTC
1 ATGTATATAATTGCA-CCAAATCAAAGTTTC
*
14162607 ATGTATGTAATTGCACCAAATCAAAG-TTC
1 ATGTATATAATTGCACCAAATCAAAGTTTC
14162636 ATGTATCAT-ATTGCAC
1 ATGTAT-ATAATTGCAC
14162652 ATTGAATCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 16 0.41
30 11 0.28
31 12 0.31
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (30 bp):
ATGTATATAATTGCACCAAATCAAAGTTTC
Found at i:14165861 original size:27 final size:27
Alignment explanation
Indices: 14165831--14165897 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
14165821 CCTATCAGGT
14165831 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
*
14165858 AGGCGCCAATGAAGGTGCCTTATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
14165885 AGGCGCCAATGAA
1 AGGCGCCAATGAA
14165898 ATTTATGTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCATAGAG
Found at i:14166133 original size:22 final size:26
Alignment explanation
Indices: 14166078--14166150 Score: 100
Period size: 22 Copynumber: 2.9 Consensus size: 26
14166068 ATATCCCGAC
14166078 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAA-TATAAT
14166105 ATTACAATATTCATAC-AAA-A-AA-
1 ATTACAATATTCATACAAAATATAAT
*
14166127 ATTACAATATTCATACTAAATATA
1 ATTACAATATTCATACAAAATATA
14166151 GATAATCTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
22 16 0.37
23 5 0.12
24 2 0.05
25 1 0.02
26 3 0.07
27 16 0.37
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATATAAT
Found at i:14166221 original size:27 final size:27
Alignment explanation
Indices: 14166183--14166239 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
14166173 ATAACAAAAA
14166183 AATATTGCAATTTTATATGAATATTAT
1 AATATTGCAATTTTATATGAATATTAT
* * * *
14166210 AATATTGTAATTTTGTGTGAATATTGT
1 AATATTGCAATTTTATATGAATATTAT
14166237 AAT
1 AAT
14166240 GTCGGGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49
Consensus pattern (27 bp):
AATATTGCAATTTTATATGAATATTAT
Found at i:14166427 original size:19 final size:19
Alignment explanation
Indices: 14166403--14166454 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
14166393 ACAAACACAA
14166403 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
14166422 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
14166441 AAATTT-TAA-ATAAT
1 AAATTTATAACATAAT
14166455 TTGTATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 25 0.76
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTTATAACATAATCCT
Found at i:14166481 original size:19 final size:19
Alignment explanation
Indices: 14166454--14166491 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14166444 TTTTAAATAA
*
14166454 TTTGTATGAATATTGTAAT
1 TTTGGATGAATATTGTAAT
14166473 TTTGGATGAATATTGTAAT
1 TTTGGATGAATATTGTAAT
14166492 GTCGGGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (19 bp):
TTTGGATGAATATTGTAAT
Found at i:14166681 original size:19 final size:19
Alignment explanation
Indices: 14166657--14166697 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
14166647 ACAAACACAA
*
14166657 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
14166676 AAATTTATAACATAACCCT
1 AAATTTATAACATAACCCT
14166695 AAA
1 AAA
14166698 CTCGAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:14166752 original size:27 final size:27
Alignment explanation
Indices: 14166714--14166789 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
14166704 AAAATCAGAG
14166714 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
* *
14166741 CATTGGCGCCTCCTAGATAGGTACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
* *
14166768 CATTGGCGCCTCTCAAATAGGC
1 CATTGGCGCCTCCCAGATAGGC
14166790 GCCAATACTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.20
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:14173874 original size:15 final size:15
Alignment explanation
Indices: 14173854--14173907 Score: 108
Period size: 15 Copynumber: 3.6 Consensus size: 15
14173844 TTTATACCAT
14173854 TTACCAACTGATTTG
1 TTACCAACTGATTTG
14173869 TTACCAACTGATTTG
1 TTACCAACTGATTTG
14173884 TTACCAACTGATTTG
1 TTACCAACTGATTTG
14173899 TTACCAACT
1 TTACCAACT
14173908 TATATATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (15 bp):
TTACCAACTGATTTG
Found at i:14174018 original size:172 final size:172
Alignment explanation
Indices: 14173732--14174042 Score: 586
Period size: 172 Copynumber: 1.8 Consensus size: 172
14173722 TCAAGCATCA
14173732 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
1 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
* *
14173797 ACTATTTCCATGCTATATCAAAAATAATCTCACCACATTTGACCACATTTATACCATTTACCAAC
66 ACTATTTCCATGCTATATAAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
14173862 TGATTTGTTACCAACTGATTTGTTACCAACTGATTTGTTACC
131 TGATTTGTTACCAACTGATTTGTTACCAACTGATTTGTTACC
*
14173904 AACTTATATATATACATGAGCATATTTGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
1 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
*
14173969 ACTATTTCCATGCTATATAAAAAATAATCTCAGCACATTTAACCACATTTATACCATTTACCAAC
66 ACTATTTCCATGCTATATAAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
14174034 TGATTTGTT
131 TGATTTGTT
14174043 TCCATACCAA
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
172 135 1.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.36
Consensus pattern (172 bp):
AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
ACTATTTCCATGCTATATAAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
TGATTTGTTACCAACTGATTTGTTACCAACTGATTTGTTACC
Found at i:14199531 original size:11 final size:11
Alignment explanation
Indices: 14199515--14199543 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14199505 CTGTTTCCAT
14199515 TGTTTTGGTGC
1 TGTTTTGGTGC
14199526 TGTTTTGGTGC
1 TGTTTTGGTGC
14199537 TGTTTTG
1 TGTTTTG
14199544 CTGTCATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.07, G:0.34, T:0.59
Consensus pattern (11 bp):
TGTTTTGGTGC
Found at i:14204943 original size:21 final size:19
Alignment explanation
Indices: 14204878--14204971 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
14204868 AATTTTTGAG
14204878 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14204897 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
14204916 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14204935 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
14204956 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
14204972 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 51 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14204953 original size:40 final size:38
Alignment explanation
Indices: 14204878--14204978 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
14204868 AATTTTTGAG
14204878 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
14204916 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
14204956 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
14204979 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:14204990 original size:23 final size:22
Alignment explanation
Indices: 14204910--14204995 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 22
14204900 ATGCAATCCT
*
14204910 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
14204931 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
14204950 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
14204972 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
14204995 A
1 A
14204996 ATTTAATTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
18 2 0.04
19 14 0.25
21 15 0.27
22 10 0.18
23 14 0.25
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:14205604 original size:27 final size:26
Alignment explanation
Indices: 14205574--14205624 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14205564 TGTACACATA
14205574 TATATATATTTTAAACGAATATTTTTC
1 TATAT-TATTTTAAACGAATATTTTTC
* * *
14205601 TATATTCTTTTTAATGAATATTTT
1 TATATTATTTTAAACGAATATTTT
14205625 CATATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATTATTTTAAACGAATATTTTTC
Found at i:14206396 original size:98 final size:98
Alignment explanation
Indices: 14206292--14206486 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
14206282 TTAAAAATAA
**
14206292 TAAATGAAATATTCCGAATTTGGGATTTTAAAGGAATTTTACCCTAACGTATTGGGTGTGATTTC
1 TAAATGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTC
*
14206357 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGAATGTTCTTTTAAAG
* *
14206390 TAAATGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAATGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTC
14206455 TTAAATCTTGGATAAGTGAATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGAATGTTCTTTTAAA
14206487 ATTTTATTGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (98 bp):
TAAATGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGAATGTTCTTTTAAAG
Found at i:14210500 original size:21 final size:23
Alignment explanation
Indices: 14210474--14210515 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
14210464 TCCTATGAGT
*
14210474 TCAAAAT-TTAAAAA-AAAAAGG
1 TCAAAATCATAAAAATAAAAAGG
14210495 TCAAAATCATAAAAATAAAAA
1 TCAAAATCATAAAAATAAAAA
14210516 AATGATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 6 0.33
23 5 0.28
ACGTcount: A:0.69, C:0.07, G:0.05, T:0.19
Consensus pattern (23 bp):
TCAAAATCATAAAAATAAAAAGG
Found at i:14212027 original size:132 final size:132
Alignment explanation
Indices: 14211790--14212574 Score: 1329
Period size: 132 Copynumber: 5.9 Consensus size: 132
14211780 CTGCATTGAC
14211790 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
14211855 GTTATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
14211920 GT
131 GT
*
14211922 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
14211987 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCTTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
14212052 GT
131 GT
**
14212054 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
14212119 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATGGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
14212184 GT
131 GT
* *
14212186 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
14212251 GTAATTCTACTTTCCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
14212316 GT
131 GT
* *
14212318 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
14212383 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATTTTATCTCCTTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
*
14212448 AT
131 GT
* * * *
14212450 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGGGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
14212515 GTAATTCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTGTAAG-TCTTATCTCCCT
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
14212575 GCAGTTGCAG
Statistics
Matches: 617, Mismatches: 35, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
132 614 1.00
133 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:14212552 original size:43 final size:44
Alignment explanation
Indices: 14211835--14212556 Score: 199
Period size: 44 Copynumber: 16.4 Consensus size: 44
14211825 CTGTGGTTAT
* ** * *
14211835 AGTGGAGTACATTGAAGCCAGT-TATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGGCAAC
* ** * **
14211878 AGTGGAATAGATTGAAGATTTTAGA-TCTTA-TCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATAGTAGATTC-TACT-TCCCTAGGCAAC
* * * * * * ** *
14211922 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTAT
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTA-GGCAAC
* ** *
14211967 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGGCAAC
* * * * * **
14212010 AGTGGAATAGATTGAAGAT-TTCA-AATCTTA-TCTCCTTAAGCAGT
1 AGTGGAGTAGATTGAAGATAGT-AGATTC-TACT-TCCCTAGGCAAC
* * * * * * * ** *
14212054 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTAT
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCT-AGGCAAC
* **
14212099 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGG-CAAC
* * * * **
14212142 AGTGGAATAGATGGAAGAT-TTCAGA-TCTTA-TCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATAGT-AGATTC-TACT-TCCCTAGGCAAC
* * * ** * * * ** *
14212186 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTAT
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCT-AGGCAAC
* * * *
14212231 AGTGGAGTACATTGAAGCTAGTA-ATTCTACTTTCCT-GGACAAT
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGG-CAAC
* * * **
14212274 AGTGGAATAGATTGAAGAT-TTCAGA-TCTTA-TCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATAGT-AGATTC-TACT-TCCCTAGGCAAC
* * * ** * * ** *
14212318 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTAT
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTA-GGCAAC
* ** *
14212363 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGGCAAC
* * * * * *
14212406 AGTGGAATAGATTGAAGAT-TTCAGATTTTA-TCTCCTTAAGCAAT
1 AGTGGAGTAGATTGAAGATAGT-AGATTCTACT-TCCCTAGGCAAC
* * * * * * **
14212450 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCT-AGGCAAC
* * *
14212495 AGTGGGGTACATTGAAGCTAGTA-ATTCTACTTCCCTAGGCAAC
1 AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGGCAAC
*
14212538 AGTGGAATAGATTGAAGAT
1 AGTGGAGTAGATTGAAGAT
14212557 TGTAAGTCTT
Statistics
Matches: 464, Mismatches: 176, Indels: 78
0.65 0.25 0.11
Matches are distributed among these distances:
42 8 0.02
43 122 0.26
44 236 0.51
45 98 0.21
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATAGTAGATTCTACTTCCCTAGGCAAC
Found at i:14212868 original size:21 final size:19
Alignment explanation
Indices: 14212803--14212896 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
14212793 AATTTTTGAG
14212803 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14212822 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
14212841 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14212860 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
14212881 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
14212897 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 51 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14212878 original size:40 final size:38
Alignment explanation
Indices: 14212803--14212903 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
14212793 AATTTTTGAG
14212803 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
14212841 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
14212881 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
14212904 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:14212915 original size:23 final size:22
Alignment explanation
Indices: 14212835--14212919 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
14212825 ATGCAATCCT
*
14212835 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
14212856 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
14212875 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
14212897 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
14212920 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:14212929 original size:22 final size:23
Alignment explanation
Indices: 14212885--14212929 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14212875 AGATATGATA
*
14212885 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
14212908 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
14212930 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:14213535 original size:27 final size:26
Alignment explanation
Indices: 14213505--14213555 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14213495 TATGTACACA
14213505 TATATATATTTTAAACGAATATTTTTC
1 TATAT-TATTTTAAACGAATATTTTTC
* * *
14213532 TATATTCTTTTTAATGAATATTTT
1 TATATTATTTTAAACGAATATTTT
14213556 CATATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATTATTTTAAACGAATATTTTTC
Found at i:14214349 original size:98 final size:98
Alignment explanation
Indices: 14214222--14214416 Score: 318
Period size: 98 Copynumber: 2.0 Consensus size: 98
14214212 TTAAAAATAA
* * ** *
14214222 TAAAGGAAATATTTCGAATTTGGGATTTTAAAGGAATTTTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
14214287 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
14214320 TAAATGAAATATTCCGAGTCTGGGATTTTAAAGGAATCGTGCCTTAACGTATTGGGTGTGATTTA
1 TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
14214385 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
14214417 ATTTTATTGT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:14216275 original size:8 final size:8
Alignment explanation
Indices: 14216262--14216290 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
14216252 TATATATACT
14216262 AAATAATA
1 AAATAATA
14216270 AAATAATA
1 AAATAATA
14216278 AAATAATA
1 AAATAATA
14216286 AAATA
1 AAATA
14216291 TCATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:14217762 original size:11 final size:11
Alignment explanation
Indices: 14217746--14217770 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14217736 GTAGAACCCA
14217746 TTTTTTGTGTT
1 TTTTTTGTGTT
14217757 TTTTTTGTGTT
1 TTTTTTGTGTT
14217768 TTT
1 TTT
14217771 GTAGTTGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (11 bp):
TTTTTTGTGTT
Found at i:14224628 original size:52 final size:52
Alignment explanation
Indices: 14224514--14224712 Score: 230
Period size: 52 Copynumber: 3.9 Consensus size: 52
14224504 ATATCACATA
* * * *
14224514 CCGAGGCCATAGCCCAGCCATGGTCTTATA-CGGATCACATATCACA---CT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * * *
14224562 --GATGCCATATCCCAGATATGGTCTTATACCGTAGCACATATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* *
14224612 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAGCACAAATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * *
14224664 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATTTCACAT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCG-AAGCACATATCACAT
14224713 GCTGCCATGG
Statistics
Matches: 129, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
46 24 0.19
47 14 0.11
50 2 0.02
52 77 0.60
53 12 0.09
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (52 bp):
CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
Found at i:14227252 original size:30 final size:30
Alignment explanation
Indices: 14227200--14227296 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
14227190 TTATGGAGCA
14227200 AAGATAAGAAGAAAACC-GAATAAAGAAATCC
1 AAGAT-AG-AGAAAACCAGAATAAAGAAATCC
*
14227231 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAGAGAAAACCAGAATAAAGAAATCC
* * * * *
14227261 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAGAGAAAACCAGAATAAAGAAATCC
14227291 AAGATA
1 AAGATA
14227297 CGATACTATG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 9 0.16
30 41 0.72
31 7 0.12
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGATAGAGAAAACCAGAATAAAGAAATCC
Found at i:14227256 original size:15 final size:15
Alignment explanation
Indices: 14227208--14227287 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
14227198 CAAAGATAAG
*
14227208 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
14227222 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
14227237 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
14227252 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
14227267 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
14227282 AAGAAA
1 AAGAAA
14227288 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:14227296 original size:15 final size:15
Alignment explanation
Indices: 14227219--14227296 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
14227209 AGAAAACCGA
14227219 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
14227234 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
14227248 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
14227263 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
14227279 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
14227294 ATA
1 ATA
14227297 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:14229787 original size:83 final size:83
Alignment explanation
Indices: 14229694--14229860 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
14229684 TAGCCATTCC
14229694 AATGGCTAATCATTACCAATCATTTCCATACCACTCAATAACCATATCATAAGACCATATATACA
1 AATGGCTAATCATTACCAATCATTTCCATACCACTCAATAACCATATCATAAGACCATATATACA
14229759 AAATGATTATAATGCTAT
66 AAATGATTATAATGCTAT
14229777 AATGGCTAATCATTACCAATCATTTCCATACCACTCAATAACCATATCATAAGACCATATATACA
1 AATGGCTAATCATTACCAATCATTTCCATACCACTCAATAACCATATCATAAGACCATATATACA
*
14229842 AAATGATTATGATGCTAT
66 AAATGATTATAATGCTAT
14229860 A
1 A
14229861 CATGCCATAC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (83 bp):
AATGGCTAATCATTACCAATCATTTCCATACCACTCAATAACCATATCATAAGACCATATATACA
AAATGATTATAATGCTAT
Found at i:14230720 original size:52 final size:52
Alignment explanation
Indices: 14230599--14230796 Score: 212
Period size: 52 Copynumber: 3.9 Consensus size: 52
14230589 ATATCACATA
* * * *
14230599 CCGAGGCCATAGCCCAGCCATGGTCTTATA-CGGATCACATATCACA---CT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * * *
14230647 --GATGCCATA-TCCAGATATGGTCTTATACCGTAGCACATATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * *
14230696 CCGAAACCATAGCCCAGCTATGGTCTTATACGGAAGCACAAATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * *
14230748 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATTTCACAT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCG-AAGCACATATCACAT
14230797 GCTGCCATGG
Statistics
Matches: 125, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
45 15 0.12
46 22 0.18
49 2 0.02
51 7 0.06
52 67 0.54
53 12 0.10
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (52 bp):
CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
Found at i:14232410 original size:18 final size:19
Alignment explanation
Indices: 14232371--14232414 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14232361 GACCCTTAAA
* *
14232371 AAATAATTTTTAAATTATC
1 AAATATTTTTTAAACTATC
14232390 AAATATTTTTTAAACTA-C
1 AAATATTTTTTAAACTATC
14232408 AAA-ATTT
1 AAATATTT
14232415 ATATATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 15 0.65
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTTTTAAACTATC
Found at i:14233635 original size:29 final size:29
Alignment explanation
Indices: 14233572--14233636 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
14233562 ATTTGACTTT
* *
14233572 ATTTGATTTTTTTAATAGTACAAAGATTA
1 ATTTGATTTTTTTAATAATACAAAGACTA
* * **
14233601 AATTGATTTTTTTAATAATAGATGGACTA
1 ATTTGATTTTTTTAATAATACAAAGACTA
14233630 ATTTGAT
1 ATTTGAT
14233637 CTGATCTCTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.48
Consensus pattern (29 bp):
ATTTGATTTTTTTAATAATACAAAGACTA
Found at i:14234025 original size:25 final size:25
Alignment explanation
Indices: 14233978--14234025 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14233968 TTAATTTGAA
* *
14233978 TATTTCATTTTTTTAAAAGATAATT
1 TATTTCATATTTTTAAAAAATAATT
14234003 TATTTCA-ATTTTTAATAAAATAA
1 TATTTCATATTTTTAA-AAAATAA
14234026 AATTAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (25 bp):
TATTTCATATTTTTAAAAAATAATT
Found at i:14236835 original size:16 final size:16
Alignment explanation
Indices: 14236811--14236848 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14236801 TTTGGTTCGC
* *
14236811 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
14236827 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
14236843 TGTAAT
1 TGTAAT
14236849 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:14236893 original size:45 final size:44
Alignment explanation
Indices: 14236827--14236921 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
14236817 GGATTAGAGG
*
14236827 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTATTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTATTTGGTTGAA
* *** *
14236872 TGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTATTTGGTTGAA
14236916 TGTAAT
1 TGTAAT
14236922 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 21 0.48
45 23 0.52
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTATTTGGTTGAA
Found at i:14237102 original size:18 final size:17
Alignment explanation
Indices: 14237081--14237115 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14237071 TTATTATTAA
*
14237081 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14237099 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14237116 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14237245 original size:16 final size:16
Alignment explanation
Indices: 14237208--14237249 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14237198 TTAATCATAT
*
14237208 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14237224 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14237239 TTAAAATATAT
1 TTAAAATATAT
14237250 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14237256 original size:14 final size:15
Alignment explanation
Indices: 14237217--14237258 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14237207 TTTAAACATA
*
14237217 ATTATTATTAAATAT
1 ATTATAATTAAATAT
14237232 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
14237246 A-TATAATTTAATA
1 ATTATAATTAAATA
14237259 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:14237269 original size:147 final size:147
Alignment explanation
Indices: 14237002--14237274 Score: 512
Period size: 147 Copynumber: 1.9 Consensus size: 147
14236992 ATGATTATTG
*
14237002 TTATTGTTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTTAAC
1 TTATTGTTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAAC
*
14237067 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
66 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
14237132 AAATTTGTTTTGGTAAA
131 AAATTTGTTTTGGTAAA
14237149 TTATT-TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
1 TTATTGTT-TTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
14237213 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
65 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
14237275 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
146 2 0.02
147 121 0.98
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:14237351 original size:120 final size:121
Alignment explanation
Indices: 14237206--14237503 Score: 494
Period size: 120 Copynumber: 2.5 Consensus size: 121
14237196 ATTTAATCAT
*
14237206 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
14237271 ATTAATATTCTTATATGAATTTACTCAAACCATTATATATGATACTGTAAAATATAA
66 ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATA-AA
*
14237328 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
14237391 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATAAA
66 ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAA
* * *
14237447 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
14237504 TAAAATAATT
Statistics
Matches: 167, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
119 3 0.02
120 159 0.95
121 4 0.02
122 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATAAA
Found at i:14237376 original size:14 final size:15
Alignment explanation
Indices: 14237327--14237378 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14237317 GTAAAATATA
14237327 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14237342 TATTAAATATATTAT
1 AATTAAATATATTAT
14237357 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14237370 AATTTAATA
1 AATTAAATA
14237379 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14237441 original size:61 final size:61
Alignment explanation
Indices: 14237256--14237443 Score: 172
Period size: 61 Copynumber: 3.1 Consensus size: 61
14237246 ATATAATTTA
* * *
14237256 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCATTATATATGATACT
1 ATAAAATTCTTAATTATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * * * * * * *
14237317 GTAAAA-TATAAATTA--ACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-TT
1 ATAAAATTCTTAATTATTA-AT-ATTCTTATATGAATTTACTCA-AATCATAATATATGATACT
14237375 AATAAAATTCTTAATTATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATTATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
14237437 ATAAAAT
1 ATAAAAT
14237444 AAAATTTGAA
Statistics
Matches: 92, Mismatches: 25, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
58 4 0.04
59 24 0.26
60 27 0.29
61 33 0.36
62 4 0.04
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (61 bp):
ATAAAATTCTTAATTATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
Found at i:14237516 original size:28 final size:27
Alignment explanation
Indices: 14237440--14237516 Score: 70
Period size: 28 Copynumber: 2.9 Consensus size: 27
14237430 TGATACTATA
*
14237440 AAATAAAATTTGAAATAATTA-ATATT
1 AAATAAAATTTAAAATAATTATATATT
* *
14237466 AAATATATTTTAATTAA-AA-TATATGATT
1 AAATAAAATTTAA--AATAATTATAT-ATT
*
14237494 TAATAAAATTTAAAATAATTATA
1 AAATAAAATTTAAAATAATTATA
14237517 ACTAATAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
26 14 0.36
27 6 0.15
28 19 0.49
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (27 bp):
AAATAAAATTTAAAATAATTATATATT
Found at i:14237613 original size:101 final size:93
Alignment explanation
Indices: 14237446--14237726 Score: 286
Period size: 91 Copynumber: 3.0 Consensus size: 93
14237436 TATAAAATAA
* * * *
14237446 AATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAAAA
1 AATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT----
* * * *
14237509 TAATTATAACTAATAAATTATATTTTATGAATTTGTAT
61 T-A--ATAA-T-ATAAATTTTATTATATGAATTTATAC
* *
14237547 AATTTAAAATAA-TAATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGAT
1 AATTTAAAATAATTAA-TATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT
*
14237611 -A-ATAAATTTTCTTATATGAATTTATAC
65 AATATAAATTTTATTATATGAATTTATAC
* *
14237638 AATTTAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
**
14237703 ATA-AAATGGTATTATATGAATTTA
66 ATATAAATTTTATTATATGAATTTA
14237727 CTAAAATCAA
Statistics
Matches: 156, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
91 77 0.49
92 22 0.14
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 6 0.04
101 45 0.29
102 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (93 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
ATATAAATTTTATTATATGAATTTATAC
Found at i:14237614 original size:91 final size:91
Alignment explanation
Indices: 14237519--14237726 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
14237509 TAATTATAAC
* * * *
14237519 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
14237583 TAATATATAATTTCATAAAATTCTTGA
65 TAATATATAATTTCATAAAATTCTTAA
* * *
14237610 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
14237675 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
**
14237701 TAATAAAATGGTATTATATGAATTTA
1 TAAT-AAATTATATTATATGAATTTA
14237727 CTAAAATCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 82 0.80
92 21 0.20
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:14237701 original size:47 final size:46
Alignment explanation
Indices: 14237569--14237707 Score: 126
Period size: 47 Copynumber: 3.0 Consensus size: 46
14237559 TAATTATTAC
* *
14237569 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAAT-ATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
14237616 AT-T--TTCTTATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
14237660 ATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATA-TGATATATAATTTCATAAAATTCTTAATAATAA
14237707 A
1 A
14237708 ATGGTATTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 14 0.20
47 22 0.32
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (46 bp):
ATATAATTTAATATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:14239136 original size:11 final size:11
Alignment explanation
Indices: 14239122--14239148 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14239112 AAAAATCAAT
14239122 ACAAAAGTTTC
1 ACAAAAGTTTC
14239133 ACAAAAGTTTC
1 ACAAAAGTTTC
14239144 ACAAA
1 ACAAA
14239149 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:14246491 original size:29 final size:30
Alignment explanation
Indices: 14246438--14246497 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
14246428 TCTGAGACTT
*
14246438 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGTAAAAATTTA
*
14246468 GGGGC-AAAATCGTAATTTTG-AAAAATTTA
1 GGGGCAAAAAT-GTAATTATGTAAAAATTTA
14246497 G
1 G
14246498 AGTCGAGGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAATTTA
Found at i:14248143 original size:35 final size:35
Alignment explanation
Indices: 14248103--14248173 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
14248093 CAAAGTAAAT
14248103 TTTTATGCTCCGAATTAGTAAGATAAGTTAAGTAA
1 TTTTATGCTCCGAATTAGTAAGATAAGTTAAGTAA
14248138 TTTTATGCTCCGAATTAGTAAGATAAGTTAAGTAA
1 TTTTATGCTCCGAATTAGTAAGATAAGTTAAGTAA
14248173 T
1 T
14248174 GCTTCGTGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (35 bp):
TTTTATGCTCCGAATTAGTAAGATAAGTTAAGTAA
Found at i:14261887 original size:243 final size:234
Alignment explanation
Indices: 14261447--14261924 Score: 785
Period size: 243 Copynumber: 2.0 Consensus size: 234
14261437 CATTAGTTTA
*
14261447 ACAGTTGGTTTTGTTTCAATAATAATTGATTTAAAATTTTGAAAATAAAAAATTATGGCAAATTA
1 ACAGTTGGTTTTGTTTCAATAATAATTGATTTAAAATTTTGAAAATAAAAAATTATGGAAAATTA
* *
14261512 CACCGTTAGTCATTCTAAATAAGGGTCATTCCTCCATTTTTTTTTGTTAATTTGGTTACCCTAAA
66 CACCGTTAGTCATTCTAAATAAAGGTCATTCATCCATTTTTTTTTGTTAATTTGGTTACCCTAAA
* *
14261577 AAAGTTGATCAAATTGGTCACTCTACCATTAAATGGTAACAAAATATTAACGATGCATTTGTACA
131 AAAATTGATCAAATTGGTCACTCTACCATTAAATGGCAACAAAATATTAACGATGCATTTGTACA
*
14261642 AAAAAATTGGGGTGATCAAAGTAGTAATGAACTTTATTT
196 AAAAAATTGGGGTGATCAAAGTAGTAACGAACTTTATTT
*
14261681 ACAGTTGGTTTTGTTTCAATAATAATTTATTTAAAATTTTGAAAATAAAAAATTATGGAAAATTA
1 ACAGTTGGTTTTGTTTCAATAATAATTGATTTAAAATTTTGAAAATAAAAAATTATGGAAAATTA
*
14261746 CACCGTTAGTCATTCTAAATAAAGGTCATTGCTATTTTGATCACCTTTTTTTTTGTTAATTTGGT
66 CACCGTTAGTCATTCTAAATAAAGGTCATT-C-------ATC-CATTTTTTTTTGTTAATTTGGT
14261811 TACCCTAAAAAAATTGATCAAATTGGTCACTCTACCATTAAATGGCAACAAAATATTAACGATGC
122 TACCCTAAAAAAATTGATCAAATTGGTCACTCTACCATTAAATGGCAACAAAATATTAACGATGC
* *
14261876 ATTTTTACAAAAAAATTGGGGTGATCAAAGTAGTAACGACCTTTATTT
187 ATTTGTACAAAAAAATTGGGGTGATCAAAGTAGTAACGAACTTTATTT
14261924 A
1 A
14261925 GAGTGATTGA
Statistics
Matches: 225, Mismatches: 10, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
234 92 0.41
235 1 0.00
242 2 0.01
243 130 0.58
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (234 bp):
ACAGTTGGTTTTGTTTCAATAATAATTGATTTAAAATTTTGAAAATAAAAAATTATGGAAAATTA
CACCGTTAGTCATTCTAAATAAAGGTCATTCATCCATTTTTTTTTGTTAATTTGGTTACCCTAAA
AAAATTGATCAAATTGGTCACTCTACCATTAAATGGCAACAAAATATTAACGATGCATTTGTACA
AAAAAATTGGGGTGATCAAAGTAGTAACGAACTTTATTT
Found at i:14262327 original size:14 final size:14
Alignment explanation
Indices: 14262304--14262334 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14262294 TAATAATAAA
14262304 AATGGACATTTCTC
1 AATGGACATTTCTC
*
14262318 AATGGTCATTTCTC
1 AATGGACATTTCTC
14262332 AAT
1 AAT
14262335 TTGGATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (14 bp):
AATGGACATTTCTC
Found at i:14264439 original size:20 final size:20
Alignment explanation
Indices: 14264414--14264469 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
14264404 GATTAGTACC
14264414 ATTATTATTATAAAATCGAT
1 ATTATTATTATAAAATCGAT
* * *
14264434 ATTATTATGATAAAGTTGAT
1 ATTATTATTATAAAATCGAT
*
14264454 ATTATTACTATAAAAT
1 ATTATTATTATAAAAT
14264470 TGGTATTCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.45
Consensus pattern (20 bp):
ATTATTATTATAAAATCGAT
Found at i:14264476 original size:20 final size:19
Alignment explanation
Indices: 14264414--14264476 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
14264404 GATTAGTACC
*
14264414 ATTATTATTATAAAATCGAT
1 ATTATTA-TATAAAATTGAT
*
14264434 ATTATTATGATAAAGTTGAT
1 ATTATTAT-ATAAAATTGAT
*
14264454 ATTATTACTATAAAATTGGT
1 ATTATTA-TATAAAATTGAT
14264474 ATT
1 ATT
14264477 CTCATTACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (19 bp):
ATTATTATATAAAATTGAT
Found at i:14267440 original size:23 final size:23
Alignment explanation
Indices: 14267414--14267458 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14267404 GCTTGTAATC
14267414 GATTTGCAATTGTTTTTGCCACT
1 GATTTGCAATTGTTTTTGCCACT
*
14267437 GATTTGCGATTGTTTTTGCCAC
1 GATTTGCAATTGTTTTTGCCAC
14267459 CATTTTGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.47
Consensus pattern (23 bp):
GATTTGCAATTGTTTTTGCCACT
Found at i:14267465 original size:23 final size:23
Alignment explanation
Indices: 14267415--14267463 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
14267405 CTTGTAATCG
*
14267415 ATTTGCAATTGTTTTTGCCACTG
1 ATTTGCAATTGTTTTTGCCACTC
*
14267438 ATTTGCGATTGTTTTTGCCAC-C
1 ATTTGCAATTGTTTTTGCCACTC
14267460 ATTT
1 ATTT
14267464 TGTAGATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (23 bp):
ATTTGCAATTGTTTTTGCCACTC
Found at i:14274142 original size:23 final size:23
Alignment explanation
Indices: 14274112--14274196 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
14274102 CCCATATTAA
*
14274112 ATATATATTTAATATATATAAAT
1 ATATATATTTAATATAAATAAAT
* *
14274135 ATATATATTTGAT-TAAAAATAAT
1 ATATATATTTAATATAAATA-AAT
* *
14274158 ATATATATTTGATTAAAAATAAA-
1 ATATATATTT-AATATAAATAAAT
*
14274181 AAATATATTTAATATA
1 ATATATATTTAATATA
14274197 TAATTCGGGC
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
22 8 0.16
23 34 0.69
24 3 0.06
25 4 0.08
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
ATATATATTTAATATAAATAAAT
Found at i:14274619 original size:14 final size:14
Alignment explanation
Indices: 14274600--14274629 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14274590 TGATTGTTTT
*
14274600 TAATCTAAATTTAC
1 TAATCTAAATTAAC
14274614 TAATCTAAATTAAC
1 TAATCTAAATTAAC
14274628 TA
1 TA
14274630 CGAACGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:14275939 original size:15 final size:14
Alignment explanation
Indices: 14275904--14275944 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
14275894 CTTTACTATT
14275904 TTATCAAAACATTAG
1 TTAT-AAAACATTAG
*
14275919 TTATAAAATATTAG
1 TTATAAAACATTAG
14275933 TTAATAAAACAT
1 TT-ATAAAACAT
14275945 AATGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (14 bp):
TTATAAAACATTAG
Found at i:14278644 original size:16 final size:15
Alignment explanation
Indices: 14278621--14278654 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14278611 TTTGATAAAC
*
14278621 TGAAAATTTAAGTAT
1 TGAAAAATTAAGTAT
*
14278636 TGAAAAATTAAGTGT
1 TGAAAAATTAAGTAT
14278651 TGAA
1 TGAA
14278655 TTTTTTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (15 bp):
TGAAAAATTAAGTAT
Found at i:14278666 original size:15 final size:16
Alignment explanation
Indices: 14278644--14278688 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
14278634 ATTGAAAAAT
14278644 TAAGTGTTGAATTTT-
1 TAAGTGTTGAATTTTA
* * *
14278659 TTATTGTTAAATTTTA
1 TAAGTGTTGAATTTTA
14278675 TAAGTGTTGAATTT
1 TAAGTGTTGAATTT
14278689 ATATTATAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.56
Consensus pattern (16 bp):
TAAGTGTTGAATTTTA
Found at i:14281563 original size:725 final size:725
Alignment explanation
Indices: 14280174--14283078 Score: 5650
Period size: 725 Copynumber: 4.0 Consensus size: 725
14280164 TATCGTAATA
14280174 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
*
14280239 TACTCTATTCATCTGGGTACTACGAAAATGTATAATGATTTGAAACGGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
14280304 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14280369 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
14280434 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
14280499 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14280564 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
14280629 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
*
14280694 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTATAGGATATGTTGAGATGTTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
14280759 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
14280824 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14280889 GTATTGGTCT
716 GTATTGGTCT
14280899 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
14280964 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
14281029 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14281094 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
14281159 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
14281224 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14281289 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
14281354 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
*
14281419 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTATAGGATATGTTGAGATGTTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
14281484 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
14281549 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14281614 GTATTGGTCT
716 GTATTGGTCT
* *
14281624 GAATTTATGTTTTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
14281689 TAC-CATATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGA
66 TACTC-TATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGA
14281753 GTATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAA
130 GTATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAA
14281818 CATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCAC
195 CATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCAC
14281883 GATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTG
260 GATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTG
14281948 ATAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCA
325 ATAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCA
14282013 GAATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGA
390 GAATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGA
14282078 TCCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTC
455 TCCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTC
14282143 ATCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGT
520 ATCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGT
*
14282208 ATACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAA
585 ATACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAA
14282273 TTATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCAT
650 TTATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCAT
14282338 TGTATTGGTCT
715 TGTATTGGTCT
14282349 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
*
14282414 TACTCTATTCATCTGGGTACTACAAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
* *
14282479 TATGAAATGAGAAATTCGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14282544 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
*
14282609 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGGTTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
*
14282674 TAGATTGACTAAGTCAGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14282739 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
*
14282804 CCAAGATTTACATCAAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
14282869 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
*
14282934 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
* * *
14282999 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATAGGTGGAAATGTAAGATGCAATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14283064 GTATTGGTCT
716 GTATTGGTCT
14283074 GAATT
1 GAATT
14283079 GAGTGAATCC
Statistics
Matches: 2162, Mismatches: 16, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
724 1 0.00
725 2160 1.00
726 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (725 bp):
GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTCTCATATAACAACAAT
TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
GTATTGGTCT
Found at i:14285078 original size:21 final size:20
Alignment explanation
Indices: 14285038--14285111 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
14285028 CATGTTTACT
*
14285038 TTCTGTTTAACTCTCACGAGC
1 TTCTGTTTAACTCT-TCGAGC
*
14285059 TTCTGTTTAACTCATTCGAGT
1 TTCTGTTTAACTC-TTCGAGC
* * * *
14285080 TTCCGTTCAGCTCTTTTGAGC
1 TTCTGTTTAACTC-TTCGAGC
14285101 TTCTGTTTAAC
1 TTCTGTTTAAC
14285112 CCTTATGGGT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 40 0.98
22 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.45
Consensus pattern (20 bp):
TTCTGTTTAACTCTTCGAGC
Found at i:14285124 original size:42 final size:42
Alignment explanation
Indices: 14285037--14285193 Score: 156
Period size: 42 Copynumber: 3.7 Consensus size: 42
14285027 TCATGTTTAC
* * * * *
14285037 TTTCTGTTTAACTCTCACGAGCTTCTGTTTAACTCATT-CGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAAC-CCTTACGAG
* * * *
14285079 TTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
* * *
14285121 TTTCTGTTCAGCTCTAATGAGCTTCCGTTCAACCCTTACGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
* *
14285163 TTTCTGTTTAGCACTTAT-ATGCTTCTGTTTA
1 TTTCTGTTCAGCTCTTATGA-GCTTCTGTTTA
14285194 GCCTTCGGGC
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
41 4 0.04
42 88 0.96
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
Found at i:14289326 original size:21 final size:23
Alignment explanation
Indices: 14289300--14289351 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
14289290 TGTAGTTTTC
14289300 TAGGTGAAAAGA-T-GGATGTGA
1 TAGGTGAAAAGATTAGGATGTGA
*
14289321 TAGGTG-AAAGATTAGGATTTGA
1 TAGGTGAAAAGATTAGGATGTGA
14289343 TAGGTGAAA
1 TAGGTGAAA
14289352 GGCTGATGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
22 13 0.48
23 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27
Consensus pattern (23 bp):
TAGGTGAAAAGATTAGGATGTGA
Found at i:14289609 original size:17 final size:17
Alignment explanation
Indices: 14289579--14289626 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
14289569 GTCTACCTGC
14289579 AAAATAAAAGTAAATATAT
1 AAAA-AAAA-TAAATATAT
14289598 AAAAAAAATAAATATAT
1 AAAAAAAATAAATATAT
* *
14289615 ATAAAAATTAAA
1 AAAAAAAATAAA
14289627 GTTAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 19 0.70
18 4 0.15
19 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAAAAAATAAATATAT
Found at i:14303535 original size:42 final size:42
Alignment explanation
Indices: 14303446--14303559 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
14303436 TTTAACTCAT
* * * * * *
14303446 ATGAGTTTCCGTTCAACTCTAATGAGTTTCCGTTCAGGTTTT
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTTTA
* ** * *
14303488 TTGAGCTTTTGTTTAACCCTTATGGGTTTCCGTTCA-GTTCTA
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTT-TA
14303530 ATGAGCTTCCGTTCAACCCTTACGGGTTTC
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTC
14303560 TATTTAGCAC
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 3 0.05
42 54 0.95
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.42
Consensus pattern (42 bp):
ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTTTA
Found at i:14304804 original size:20 final size:22
Alignment explanation
Indices: 14304779--14304828 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
14304769 AGTAGAAGAG
14304779 AATGAAAAATAAA-GAA-AAAA
1 AATGAAAAATAAACGAACAAAA
**
14304799 AATGAAAGTTAAACGAACAAAA
1 AATGAAAAATAAACGAACAAAA
14304821 AA-GAAAAA
1 AATGAAAAA
14304829 ATTAAATTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 11 0.46
21 7 0.29
22 6 0.25
ACGTcount: A:0.74, C:0.04, G:0.12, T:0.10
Consensus pattern (22 bp):
AATGAAAAATAAACGAACAAAA
Found at i:14304826 original size:21 final size:20
Alignment explanation
Indices: 14304788--14304826 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
14304778 GAATGAAAAA
14304788 TAAAGAAAAAAAATGAAAGT
1 TAAAGAAAAAAAATGAAAGT
14304808 TAAACGAACAAAAAA-GAAA
1 TAAA-GAA-AAAAAATGAAA
14304827 AAATTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.72, C:0.05, G:0.13, T:0.10
Consensus pattern (20 bp):
TAAAGAAAAAAAATGAAAGT
Found at i:14306324 original size:25 final size:25
Alignment explanation
Indices: 14306296--14306379 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 25
14306286 CAATACCTAA
14306296 TAAACCTAAACTTAAAAATTGAGTT
1 TAAACCTAAACTTAAAAATTGAGTT
* ** *
14306321 TAAACAATTTAAAACTTAAAAATT-CCTAA
1 TAAAC---CT-AAACTTAAAAATTGAGT-T
*
14306350 TAAACCTAAACATAAAAATTGAGTT
1 TAAACCTAAACTTAAAAATTGAGTT
14306375 TAAAC
1 TAAAC
14306380 AATTTAAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
25 22 0.50
26 2 0.05
28 2 0.05
29 18 0.41
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.30
Consensus pattern (25 bp):
TAAACCTAAACTTAAAAATTGAGTT
Found at i:14306326 original size:54 final size:54
Alignment explanation
Indices: 14306252--14306389 Score: 231
Period size: 54 Copynumber: 2.5 Consensus size: 54
14306242 TCCTTTGCGT
* *
14306252 TTAAACAATTGAGATTAAACAATTTAAAACTTAACAATACCTAATAAACCTAAAC
1 TTAAA-AATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
*
14306307 TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATTCCTAATAAACCTAAAC
1 TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
*
14306361 ATAAAAATTGAGTTTAAACAATTTAAAAC
1 TTAAAAATTGAGTTTAAACAATTTAAAAC
14306390 AATTCAGTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
54 74 0.94
55 5 0.06
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (54 bp):
TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
Found at i:14306398 original size:24 final size:24
Alignment explanation
Indices: 14306366--14306413 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14306356 TAAACATAAA
*
14306366 AATTGAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
14306390 AATTCAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
14306414 TTAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AATTCAGTTTAAACAATTTAAAAC
Found at i:14307264 original size:4 final size:4
Alignment explanation
Indices: 14307255--14307313 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
14307245 CAGTAAAGAT
14307255 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14307303 ATAC ATAC ATA
1 ATAC ATAC ATA
14307314 TATAAGTTGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:14311900 original size:17 final size:18
Alignment explanation
Indices: 14311870--14311915 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
14311860 ATTTAAATTG
14311870 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
14311888 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
14311904 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
14311916 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:14313726 original size:14 final size:14
Alignment explanation
Indices: 14313688--14313730 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
14313678 TAAAATGTAC
14313688 AATATAATTAAA-T
1 AATATAATTAAATT
14313701 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
14313716 AA-ATAATTTAATT
1 AATATAATTAAATT
14313729 AA
1 AA
14313731 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:14313852 original size:5 final size:6
Alignment explanation
Indices: 14313836--14313860 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14313826 AAAGATAGAG
14313836 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
14313861 TCTATTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:14316188 original size:3 final size:3
Alignment explanation
Indices: 14316180--14316238 Score: 91
Period size: 3 Copynumber: 19.3 Consensus size: 3
14316170 TAAAACAATT
**
14316180 TAA TAA TAA TAA TAA TAA TAA TAA TGG TAA TAA TAAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
14316226 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
14316239 GATGATGATG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14316243 original size:3 final size:3
Alignment explanation
Indices: 14316237--14316281 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
14316227 AATAATAATA
14316237 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
14316282 GTATTAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:14318386 original size:154 final size:153
Alignment explanation
Indices: 14318105--14318771 Score: 1018
Period size: 154 Copynumber: 4.3 Consensus size: 153
14318095 AACATGTTTG
* * * * * * *
14318105 TATTTCAGCCATTTATTCATATTTTTTTCCTGAATTTTATTACTTTAAAAAAATATATTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTTAAAAAAATATACTATTTTC
*
14318170 TAATTTTATTATTTTACATTATTTTAGTAGATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
**
14318235 TATTTAAATTTTAAAAAAAAACCCT
131 TAAATAAATTTT--AAAAAAACCCT
*
14318260 TATTTCGGCCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTT-AAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTTAAAAAAATATACTATTTTC
* * *
14318324 TAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTTTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
14318389 TAAATAAA--TTAAAAAAACCCT
131 TAAATAAATTTTAAAAAAACCCT
* * * *
14318410 TATTTTGGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTTAAAAAAATATACTATTTTC
14318475 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
* *
14318540 TAAATAAATTTTAAAAAAATCAT
131 TAAATAAATTTTAAAAAAACCCT
* *
14318563 TATTTCGGCCCTTTGTTCGTA-TTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTT-AA-AAAAATATACTATTT
* *
14318627 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATCCATTTAGTGTGTGT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTT
14318692 TTTAAATAAATTTTAAAAAAACCCT
129 TTTAAATAAATTTTAAAAAAACCCT
* *
14318717 TATTTCAGCCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTT-AA-AAAAA
14318772 ACACACTAAA
Statistics
Matches: 469, Mismatches: 37, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
150 52 0.11
151 88 0.19
152 24 0.05
153 31 0.07
154 204 0.43
155 70 0.15
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.51
Consensus pattern (153 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTTAAAAAAATATACTATTTTC
TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
TAAATAAATTTTAAAAAAACCCT
Found at i:14318663 original size:305 final size:305
Alignment explanation
Indices: 14318105--14318771 Score: 1052
Period size: 305 Copynumber: 2.2 Consensus size: 305
14318095 AACATGTTTG
* * *
14318105 TATTTCAGCCATTTATTCATATTTTTTTCCTGAATTTTATTACTTTAAAAAAATATATTATTTTC
1 TATTTCAGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
*
14318170 TAATTTTATTATTTTACATTATTTTAGTAGATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
** * * *
14318235 TATTTAAATTTTAAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTCGGATTTTAT
131 TAAATAAATTTT-AAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTAT
14318300 TACTTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGA
195 TACTTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGA
* *
14318365 AATGTATTAATTTACTGTGTTTTTTAAATAAA-TTAAAAAAACCCT
260 AATGTATCAATTTACTGTGTGTTTTAAATAAATTTAAAAAAACCCT
**
14318410 TATTTTGGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
1 TATTTCAGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
14318475 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
*
14318540 TAAATAAATTTT-AAAAAAATCATTATTTCGGCCCTTTGTTCGTA-TTTTTTCCCAGATTTTATT
131 TAAATAAATTTTAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATT
* *
14318603 ACTTTCAATAAAAATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTT
196 ACTTT--A-AAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTT
* *
14318668 GAAATGTATCCATTTAGTGTGTGTTTTAAATAAATTTTAAAAAAACCCT
258 GAAATGTATCAATTTACTGTGTGTTTTAAATAAA-TTTAAAAAAACCCT
* * * *
14318717 TATTTCAGCCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTTCAATAAAAA
1 TATTTCAGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTT-AA-AAAAA
14318772 ACACACTAAA
Statistics
Matches: 331, Mismatches: 24, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
302 22 0.07
303 30 0.09
304 1 0.00
305 218 0.66
307 53 0.16
308 2 0.01
309 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.51
Consensus pattern (305 bp):
TATTTCAGCCATTTATTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATACTATTTTC
TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
TAAATAAATTTTAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATT
ACTTTAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAA
ATGTATCAATTTACTGTGTGTTTTAAATAAATTTAAAAAAACCCT
Found at i:14319096 original size:152 final size:152
Alignment explanation
Indices: 14318914--14319313 Score: 542
Period size: 152 Copynumber: 2.7 Consensus size: 152
14318904 TTAAAAATTT
*
14318914 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAGTAATAAA
1 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAATAATAAA
* * ** ** *
14318979 ATTCAGGGAAAAAAATACGAATAAAAGGCCGAAATAAGGGTTTTTTT-AATTTATTTAAAAA-AT
66 ATTC--CGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTTAAATTTAAATAAAAACAC
* *
14319042 ACAATAAATTAATACATTTCAAGC
129 ACAATAAATGAATACATTTCAAAC
*
14319066 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAATAATAAA
1 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAATAATAAA
*
14319131 A-TCCGAAAAAAATACGAACAAAAGGTCGAAATAAGAATTTTTTTAAATTTAAATAAAAACACAC
66 ATTCCGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTTAAATTTAAATAAAAACACAC
* * *
14319195 ACTAAATGAATACCTTTCAAAT
131 AATAAATGAATACATTTCAAAC
* *
14319217 ATAATCTACTAAAATAATGTAAAATTAA-AAAATTAAAAAATAGTATA-TTTTTTAAAATAATAA
1 ATAATGTACTAAAATAATGTAAAA-TAATAAAATTAGAAAATAGTATATTTTTTTAAAATAATAA
** * *
14319280 AA-TCTAAAAAAAATACGAACAAAAGACTGAAATA
65 AATTCCGAAAAAAATACGAACAAAAGGCCGAAATA
14319314 CGAACATGTT
Statistics
Matches: 222, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
149 36 0.16
150 56 0.25
151 63 0.28
152 67 0.30
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (152 bp):
ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAATAATAAA
ATTCCGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTTAAATTTAAATAAAAACACAC
AATAAATGAATACATTTCAAAC
Found at i:14319249 original size:151 final size:148
Alignment explanation
Indices: 14318913--14319313 Score: 543
Period size: 151 Copynumber: 2.7 Consensus size: 148
14318903 TTTAAAAATT
*
14318913 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAGTAATAA
1 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATA-TTTTTTAAAATAATAA
* * ** ** *
14318978 AATTCAGGGAAAAAAATACGAATAAAAGGCCGAAATAAGGGTTTTTTTAATTTATTTAAAAAATA
65 AA-TC--CGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTTAATTTAAATAAAAAACA
* *
14319043 CAATAAATTAATACATTTCAAG
127 CAATAAATGAATACATTTCAAA
*
14319065 CATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAATAATAA
1 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTT-AAAATAATAA
*
14319130 AATCCGAAAAAAATACGAACAAAAGGTCGAAATAAGAATTTTTTTAAATTTAAATAAAAACACAC
65 AATCCGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTT-AATTTAAATAAAAA-ACAC
* *
14319195 ACTAAATGAATACCTTTCAAA
128 AATAAATGAATACATTTCAAA
* *
14319216 TATAATCTACTAAAATAATGTAAAATTAA-AAAATTAAAAAATAGTATATTTTTTAAAATAATAA
1 TATAATGTACTAAAATAATGTAAAA-TAATAAAATTAGAAAATAGTATATTTTTTAAAATAATAA
** * *
14319280 AATCTAAAAAAAATACGAACAAAAGACTGAAATA
65 AATCCGAAAAAAATACGAACAAAAGGCCGAAATA
14319314 CGAACATGTT
Statistics
Matches: 223, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
149 36 0.16
150 51 0.23
151 75 0.34
152 61 0.27
ACGTcount: A:0.55, C:0.07, G:0.08, T:0.30
Consensus pattern (148 bp):
TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAATAATAAA
ATCCGAAAAAAATACGAACAAAAGGCCGAAATAAGAATTTTTTTAATTTAAATAAAAAACACAAT
AAATGAATACATTTCAAA
Found at i:14319425 original size:29 final size:30
Alignment explanation
Indices: 14319383--14319457 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 30
14319373 CATTCAGCTG
14319383 TTTTTT-T-TATTATTTTAGTAAATAAA-T
1 TTTTTTGTATATTATTTTAGTAAATAAATT
14319410 TTTTTTGTATATTATTTT-G---ATAAATT
1 TTTTTTGTATATTATTTTAGTAAATAAATT
14319436 TTTTTTGTA-A-TATTTTAGTAAA
1 TTTTTTGTATATTATTTTAGTAAA
14319458 AAACAGTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
24 6 0.15
25 7 0.17
26 10 0.24
27 6 0.15
28 3 0.07
29 9 0.22
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.63
Consensus pattern (30 bp):
TTTTTTGTATATTATTTTAGTAAATAAATT
Found at i:14341927 original size:126 final size:123
Alignment explanation
Indices: 14341504--14342002 Score: 454
Period size: 125 Copynumber: 4.0 Consensus size: 123
14341494 CAAATTTTTC
* * * * * *
14341504 TGGTCCTG-AAAAAATTATTTCGTGTTGACATTTCTGAGCCAATTGTATAAAAAACGCTTCAAGC
1 TGGTCCTGAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAGC
* *** *
14341568 AGGATGCTATTTGAGAAGAATTTCTGAAATAGCGGTTGCATGGACACGTGTTTGCTACAGT
66 AGGATGC-ATTTGAGAAGAATTTCTGAAATCGCCCCT-CATGGACGCGT-TTTGCTACAGT
* * * * * * *
14341629 TGGTCCTGGAAGAAATAATTTTGAGTTGACGTTTCTAAGCAAATAGTAT--AAATC-CTTTCTAC
1 TGGTCCTGAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTT-AAG
* * * * * *
14341691 CTGGATGCTTTATGAGAAGAATTTGTAAAATCGCGCCCACATGGATGCGTTTTTGCTACAGT
65 CAGGATGCATT-TGAGAAGAATTTCTGAAATCGC-CCCTCATGGACGCG-TTTTGCTACAGT
* *
14341753 AGGTCCT-AAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAGC
1 TGGTCCTGAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAGC
* * *
14341817 AGGATACGATTTGAGAAGATTTTCTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGT
66 AGGATGC-ATTTGAGAAGAATTTCTGAAATCGC-CCCTCATGGACGCG-TTTTGCTACAGT
* * ** *
14341878 TGGTCCTGAAAAAAATAATTTCGAGTTGATGTTTCTGAGTAAATAGTAT-AAAATTGCTTCT-AC
1 TGGTCCTGAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTT-TAAG
* * * ** * *
14341941 CTGGATGCTTTATGAGAAGAATTTATGAAATCATTCCCACGTGGACGCGCTTTTGCTACAGT
65 CAGGATGCATT-TGAGAAGAATTTCTGAAATC-GCCCCTCATGGACGCG-TTTTGCTACAGT
14342003 AGCATATTTG
Statistics
Matches: 303, Mismatches: 58, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
123 41 0.14
124 58 0.19
125 127 0.42
126 77 0.25
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (123 bp):
TGGTCCTGAAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAGC
AGGATGCATTTGAGAAGAATTTCTGAAATCGCCCCTCATGGACGCGTTTTGCTACAGT
Found at i:14345264 original size:43 final size:43
Alignment explanation
Indices: 14345203--14345844 Score: 544
Period size: 43 Copynumber: 15.0 Consensus size: 43
14345193 TTTTTAAGCC
**
14345203 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTT
**
14345246 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTT
* * * *
14345290 TCTAGGTTAAGGG-TTAAGGTTTTTAGGTTAAGGGTTTATAGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTA-GGGTT
* * * * * * * *
14345334 TTAAGTTTAA-AGTTTAGGGTTTCTAGGTTAAAGGTTAGAGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTT
* *
14345376 TTTAGGTTAAGGGTTTAT-GTGTTTTAAGTTTAAGGTTTATGGTT
1 TTTAGGTTAAGGGTTTATGGT-TTTTAAG-TTAAGGGTTAGGGTT
* * * *
14345420 TTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGAGTTATGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTT
* *
14345463 TTTAGGTTAAGGGTTTATGGTTTTTAGGTTTAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTT
* * * * **
14345507 TTTAAGTTAAGTG-TTA-GGTTTTTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTATGG-TTTTTAAGTTAAGGG-TTAGGGTT
* *
14345550 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTT
* *** *
14345593 TTTAGGTTAAGGTTTTATGAAATTTAATTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTT
* * * * *
14345637 TCTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGATTTATGTGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGG-GTTA-GGGTT
* * * * *
14345681 TTAAGTTTAA-GGTTTA-GGGTTTTAGGTTAAGAGTTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAG-GGTTAGGGTT
* * *
14345723 TTTAAGTTAAGGG-TTAAGATTTTT-AGCTT-A-----AGGGTT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAG-TTAAGGGTTAGGGTT
* *
14345759 TTTAGGTTTAGGGTTTA-GGATTTTTAAGTTAAAGGTTAGGGTT
1 TTTAGGTTAAGGGTTTATGG-TTTTTAAGTTAAGGGTTAGGGTT
**
14345802 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGGGT
1 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGT
14345845 GCGTTTGGTT
Statistics
Matches: 488, Mismatches: 81, Indels: 59
0.78 0.13 0.09
Matches are distributed among these distances:
36 18 0.04
37 10 0.02
38 3 0.01
42 31 0.06
43 261 0.53
44 161 0.33
45 4 0.01
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (43 bp):
TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:14345284 original size:65 final size:64
Alignment explanation
Indices: 14345203--14345758 Score: 518
Period size: 65 Copynumber: 8.6 Consensus size: 64
14345193 TTTTTAAGCC
* **
14345203 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTATGGTT
* * * *
14345268 TTTAAGTTAAGGGTTTA-GGGTTTCTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTATAGG
1 TTTAGGTTAAGGGTTTATGGATTT-TAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTAT-GG
14345332 TT
63 TT
* * * * * * *
14345334 TTAAGTTTAA-AGTTTA-GGGTTTCTAGGTTAAAGGTTAGAGTTTTTAGGTTAAGGGTTTATGTG
1 TTTAGGTTAAGGGTTTATGGATTT-TAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTATG-G
14345397 TT
63 TT
* * * * * * *
14345399 TTAAGTTTAA-GGTTTATGGTTTTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGAGTTATGGTT
1 TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAG-GGTTAGGGTTTTTAGGTTAAGGGTTATGGTT
* * * * *
14345463 TTTAGGTTAAGGGTTTATGGTTTTTAGGTTTAGGGTTTAGGGTTTTTAAGTTAAGTGTTA-GGTT
1 TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTATGG-T
14345527 T
64 T
* * * *
14345528 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTATGGTT
* * * * * *
14345593 TTTAGGTTAAGGTTTTATGAAATTTAATTTAAGGGTTTAGGGTTTCTAGGTTAAGGGTTAGGGTT
1 TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTATGGTT
* * * *
14345658 TTTAGGTTAAGGATTTATGTG-TTTTAAGTTTAAGGTTTAGGG-TTTTAGGTTAAGAGTTTAGGG
1 TTTAGGTTAAGGGTTTATG-GATTTTAAG-TTAAGGGTTAGGGTTTTTAGGTTAAG-GGTTATGG
14345721 TT
63 TT
* * *
14345723 TTTAAGTTAAGGG-TTA-AGATTTTTAGCTTAAGGGTT
1 TTTAGGTTAAGGGTTTATGGATTTTAAG-TTAAGGGTT
14345759 TTTAGGTTTA
Statistics
Matches: 427, Mismatches: 51, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
62 1 0.00
63 14 0.03
64 33 0.08
65 338 0.79
66 41 0.10
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (64 bp):
TTTAGGTTAAGGGTTTATGGATTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTATGGTT
Found at i:14345331 original size:15 final size:14
Alignment explanation
Indices: 14345301--14345369 Score: 50
Period size: 15 Copynumber: 4.7 Consensus size: 14
14345291 CTAGGTTAAG
*
14345301 GGTTAAGGTTTTTA
1 GGTTAAGGTTTATA
14345315 GGTTAAGGGTTTATA
1 GGTTAA-GGTTTATA
*
14345330 GGTTTTAA-GTTTAAA
1 GG--TTAAGGTTTATA
* * *
14345345 GTTTAGGGTTTCTA
1 GGTTAAGGTTTATA
14345359 GGTTAAAGGTT
1 GGTT-AAGGTT
14345370 AGAGTTTTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
13 3 0.07
14 14 0.33
15 21 0.50
17 4 0.10
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (14 bp):
GGTTAAGGTTTATA
Found at i:14345766 original size:58 final size:58
Alignment explanation
Indices: 14345696--14345817 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 58
14345686 TTTAAGGTTT
* *
14345696 AGGG-TTTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGGGTTAAGATTTTTAGCTTA
1 AGGGTTTTTAGGTTAAGAGTTTAGGATTTTTAAGTTAAAGGTTAAGATTTTTAGCTTA
* * * * *
14345753 AGGGTTTTTAGGTTTAGGGTTTAGGATTTTTAAGTTAAAGGTTAGGGTTTTTAGGTTA
1 AGGGTTTTTAGGTTAAGAGTTTAGGATTTTTAAGTTAAAGGTTAAGATTTTTAGCTTA
14345811 AGGGTTT
1 AGGGTTT
14345818 ATGGAATTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 4 0.07
58 53 0.93
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (58 bp):
AGGGTTTTTAGGTTAAGAGTTTAGGATTTTTAAGTTAAAGGTTAAGATTTTTAGCTTA
Found at i:14345767 original size:65 final size:64
Alignment explanation
Indices: 14345225--14345844 Score: 487
Period size: 65 Copynumber: 9.7 Consensus size: 64
14345215 GTTTATGGAA
* * **
14345225 TTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGGGT
1 TTTAGGTTAAGGGTTTA-GGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGT
14345289 T
64 T
* * * * *
14345290 TCTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTATAGG-TTTTAAGTTTAAAGTTTAGGGT
1 TTTAGGTTAAGGGTTTAGGTTTTTAGGTTAAGGGTTTA-GGGTTTTTAAG-TTAAGGGTTAGGGT
14345354 T
64 T
* * * * *
14345355 TCTAGGTTAAAGG-TTAGAGTTTTTAGGTTAAGGGTTTA-TGTGTTTTAAGTTTAAGGTTTATGG
1 TTTAGGTTAAGGGTTTAG-GTTTTTAGGTTAAGGGTTTAGGGT-TTTTAAG-TTAAGGGTTAGGG
14345418 TT
63 TT
* * * * * *
14345420 TTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGAG-TTATGGTTTTTAGGTTAAGGGTTTATGGT
1 TTTAGGTTAAGGGTTTA-GGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGT
14345484 T
64 T
* * * * * * *
14345485 TTTAGGTTTAGGGTTTAGGGTTTTTAAGTTAAGTG-TTAGGTTTTTTAGGTTAAGGGTTTATGGA
1 TTTAGGTTAAGGGTTTA-GGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGT
*
14345549 A
64 T
* * * * * **
14345550 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAAGGTTTTATGAA
1 TTTAGGTTAAGGGTTT-AGGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGG-GTTAGGGT
*
14345614 A
64 T
** * * * *
14345615 TTTAATTTAAGGGTTTAGGGTTTCTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGATTTATGTG
1 TTTAGGTTAAGGGTTTA-GGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGG-GTTA-GGG
14345679 TT
63 TT
* * * * * *
14345681 TTAAGTTTAA-GGTTTAGGGTTTTAGGTTAAGAGTTTAGGGTTTTTAAGTTAAGGGTTAAGATT
1 TTTAGGTTAAGGGTTTAGGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * * *
14345744 TTTAGCTTAA--G----GGTTTTTAGGTTTAGGGTTTAGGATTTTTAAGTTAAAGGTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
** *
14345802 TTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGGGT
1 TTTAGGTTAAGGGTTTA-GGTTTTTAGGTTAAGGGTTTAGGGT
14345845 GCGTTTGGTT
Statistics
Matches: 466, Mismatches: 67, Indels: 44
0.81 0.12 0.08
Matches are distributed among these distances:
58 49 0.11
60 1 0.00
62 1 0.00
63 11 0.02
64 27 0.06
65 339 0.73
66 37 0.08
67 1 0.00
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.46
Consensus pattern (64 bp):
TTTAGGTTAAGGGTTTAGGTTTTTAGGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:14345768 original size:21 final size:20
Alignment explanation
Indices: 14345753--14345809 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
14345743 TTTTAGCTTA
14345753 AGGGTTTTTAGGTTTAGGGTTT
1 AGGGTTTTTAGGTTTA-GG-TT
* * *
14345775 AGGATTTTTAAGTTAAAGGTT
1 AGGGTTTTTAGGTT-TAGGTT
14345796 AGGGTTTTTAGGTT
1 AGGGTTTTTAGGTT
14345810 AAGGGTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 14 0.48
22 14 0.48
23 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (20 bp):
AGGGTTTTTAGGTTTAGGTT
Found at i:14345902 original size:17 final size:16
Alignment explanation
Indices: 14345858--14345910 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
14345848 TTTGGTTCGC
14345858 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14345874 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14345890 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
14345907 TGTA
1 TGTA
14345911 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14346167 original size:18 final size:19
Alignment explanation
Indices: 14346146--14346182 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14346136 TTATTATTAA
14346146 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
14346164 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
14346183 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:14346290 original size:59 final size:58
Alignment explanation
Indices: 14346224--14346409 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
14346214 CTCAAATCAT
* *
14346224 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
14346283 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
14346343 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
14346403 AATATAT
1 AATATAT
14346410 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:14346347 original size:120 final size:120
Alignment explanation
Indices: 14346126--14346415 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
14346116 TTAATCATAT
14346126 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
14346191 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
14346248 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
14346312 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
14346368 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
14346416 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:14350173 original size:21 final size:23
Alignment explanation
Indices: 14350147--14350209 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 23
14350137 ATGCTCTTAA
14350147 GGTTTTTAGGTTAAGGG-TTA-G
1 GGTTTTTAGGTTAAGGGTTTATG
14350168 GGTTTTTAGGTTAAGGGTTTATG
1 GGTTTTTAGGTTAAGGGTTTATG
* *
14350191 GG-TTTTAAGTTTAGGGTTT
1 GGTTTTTAGGTTAAGGGTTT
14350210 TTAGGTTAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 17 0.45
22 18 0.47
23 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (23 bp):
GGTTTTTAGGTTAAGGGTTTATG
Found at i:14350235 original size:37 final size:37
Alignment explanation
Indices: 14350164--14350238 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
14350154 AGGTTAAGGG
* **
14350164 TTAGGGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGT
1 TTAGGGTTTTTAGGTTAAGGGTTTATAGAATTTAAGT
14350201 TTAGGGTTTTTAGGTTAAGGGTTTATAGAATTTAAGT
1 TTAGGGTTTTTAGGTTAAGGGTTTATAGAATTTAAGT
14350238 T
1 T
14350239 AAAGGTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (37 bp):
TTAGGGTTTTTAGGTTAAGGGTTTATAGAATTTAAGT
Found at i:14350246 original size:37 final size:37
Alignment explanation
Indices: 14350168--14350246 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
14350158 TAAGGGTTAG
* ** * *
14350168 GGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGTTTAG
1 GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGTTAAA
14350205 GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGTTAAA
1 GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGTTAAA
14350242 GGTTT
1 GGTTT
14350247 ATGGTTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (37 bp):
GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGTTAAA
Found at i:14350273 original size:21 final size:21
Alignment explanation
Indices: 14350240--14350638 Score: 415
Period size: 22 Copynumber: 18.5 Consensus size: 21
14350230 ATTTAAGTTA
* *
14350240 AAGGTTTATGGTTTTTAAGTT
1 AAGGGTTAGGGTTTTTAAGTT
*
14350261 AAGGGTTAGGGTTTTTAGGTT
1 AAGGGTTAGGGTTTTTAAGTT
14350282 AAGGGTTTATGGG-TTTTAAGTT
1 AAGGG-TTA-GGGTTTTTAAGTT
* *
14350304 TAGTGTTTAGGGTTTTTAAGTT
1 AAG-GGTTAGGGTTTTTAAGTT
*
14350326 AAGGGTTAGGGTTTTTAGGTT
1 AAGGGTTAGGGTTTTTAAGTT
* **
14350347 AAGGGTTTATGGAATTTAAGTT
1 AAGGG-TTAGGGTTTTTAAGTT
*
14350369 AAGGGTTTATGGTTTTTAAGTT
1 AAGGG-TTAGGGTTTTTAAGTT
*
14350391 AAGGGTTAGGGTTTTTAGGTT
1 AAGGGTTAGGGTTTTTAAGTT
*
14350412 AAGGGTTAGGGTTTTTAGGTT
1 AAGGGTTAGGGTTTTTAAGTT
* **
14350433 AAGGGTTTATGGAGTTTAAGTT
1 AAGGG-TTAGGGTTTTTAAGTT
*
14350455 AAGGGTTTAGTGTTTTTAAGTT
1 AAGGG-TTAGGGTTTTTAAGTT
* * *
14350477 TAGGGTTTAGTGTTTTTAGGTTT
1 AAGGG-TTAGGGTTTTTAAG-TT
* *
14350500 AAGGTTTAGGGTTTCTAAGTT
1 AAGGGTTAGGGTTTTTAAGTT
* *
14350521 AAGGGTTAAGGTTTTTAGGTT
1 AAGGGTTAGGGTTTTTAAGTT
14350542 AAGGGTTTATGGG-TTTTAAGTT
1 AAGGG-TTA-GGGTTTTTAAGTT
* *
14350564 TAGTGTTTAGGGTTTTTAAGTT
1 AAG-GGTTAGGGTTTTTAAGTT
* *
14350586 AATGGTTTAGGGTTTTTAAGTG
1 AA-GGGTTAGGGTTTTTAAGTT
14350608 AAGGGTTAGGGTTTTTAAGTT
1 AAGGGTTAGGGTTTTTAAGTT
*
14350629 AAGAGTTAGG
1 AAGGGTTAGG
14350639 ATTAGAGTTA
Statistics
Matches: 321, Mismatches: 45, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
21 140 0.44
22 168 0.52
23 13 0.04
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
AAGGGTTAGGGTTTTTAAGTT
Found at i:14350280 original size:65 final size:65
Alignment explanation
Indices: 14350147--14350630 Score: 517
Period size: 65 Copynumber: 7.6 Consensus size: 65
14350137 ATGCTCTTAA
* * * *
14350147 GGTTTTTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGG-TTTTAAG-T-----TTA
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAGGTTTA-GGGTTTTTAAGTTAAGGGTTA
14350204 G
65 G
* * *
14350205 GGTTTTTAGGTTAAGGGTTTATAGAATTTAAGTTAAAGGTTTATGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAG
* *
14350270 GGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGTT-TAGTGTTTAGGGTTTTTAAGTTAAGGGTTA
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAG-GTTTAGGGTTTTTAAGTTAAGGGTTA
14350334 G
65 G
* * *
14350335 GGTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAG
* * * * * **
14350400 GGTTTTTAGGTTAAGGG-TTAGGGTTTTTAGGTTAAGGGTTTATGGAGTTTAAGTTAAGGGTTTA
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGG-TTA
14350464 G
65 G
* * * * * * *
14350465 TGTTTTTAAGTTTAGGGTTTA-GTGTTTTTAGGTTTAAGGTTTAGGGTTTCTAAGTTAAGGGTTA
1 GGTTTTTAGGTTAAGGGTTTATG-GATTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTA
*
14350529 A
65 G
* * *
14350530 GGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGTT-TAGTGTTTAGGGTTTTTAAGTTAATGGTTT
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAG-GTTTAGGGTTTTTAAGTTAA-GGGTT
14350594 AG
64 AG
* * * *
14350596 GGTTTTTAAGTGAAGGG-TTAGGGTTTTTAAGTTAA
1 GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAA
14350631 GAGTTAGGAT
Statistics
Matches: 362, Mismatches: 47, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
58 19 0.05
59 26 0.07
60 1 0.00
64 41 0.11
65 218 0.60
66 57 0.16
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.46
Consensus pattern (65 bp):
GGTTTTTAGGTTAAGGGTTTATGGATTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAG
Found at i:14353169 original size:11 final size:12
Alignment explanation
Indices: 14353153--14353196 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
14353143 ATTAAATATG
14353153 AATTTGAGA-GA
1 AATTTGAGAGGA
14353164 AATTTG-GAAGGA
1 AATTTGAG-AGGA
14353176 AA-TTGAGAGGA
1 AATTTGAGAGGA
14353187 AATTTGAGAG
1 AATTTGAGAG
14353197 AGGATTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 16 0.55
12 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (12 bp):
AATTTGAGAGGA
Done.