Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 49 of 199
Found at i:14356181 original size:18 final size:18
Alignment explanation
Indices: 14356158--14356198 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
14356148 TTTGACAAAC
*
14356158 AATGTGGCAGACTGTCCA
1 AATGTGGCAGACAGTCCA
14356176 AATGTGGCAGACAGTCCA
1 AATGTGGCAGACAGTCCA
14356194 AATGT
1 AATGT
14356199 AAGGTAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (18 bp):
AATGTGGCAGACAGTCCA
Found at i:14357810 original size:25 final size:24
Alignment explanation
Indices: 14357765--14357850 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
14357755 TAAACATGTA
* *
14357765 AACGGGAAGCTCTTTTAAGTCTTAT
1 AACGGGAAGCT-TTGTAAGTCATAT
* *
14357790 AACGGGAAGCTTATGTGAGTCATGT
1 AACGGGAAGCTT-TGTAAGTCATAT
*
14357815 AATGGGAAGCTTTAG-AGAGTCAT-T
1 AACGGGAAGCTTT-GTA-AGTCATAT
14357839 AATCGGGAAGCT
1 AA-CGGGAAGCT
14357851 CATGAGGAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
24 5 0.10
25 45 0.90
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (24 bp):
AACGGGAAGCTTTGTAAGTCATAT
Found at i:14360504 original size:21 final size:21
Alignment explanation
Indices: 14360478--14360517 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14360468 TTTGACTCAA
*
14360478 TATTCTCATATATCATGTGTT
1 TATTCTCATATAACATGTGTT
*
14360499 TATTCTCTTATAACATGTG
1 TATTCTCATATAACATGTG
14360518 ACCATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (21 bp):
TATTCTCATATAACATGTGTT
Found at i:14362854 original size:27 final size:27
Alignment explanation
Indices: 14362824--14362920 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
14362814 ACCGGGACAA
* *
14362824 TAAACACGGGGTAGTCTATTGAGATAG
1 TAAACACGGAGTAGTCTATCGAGATAG
* *
14362851 TAAACACAGAGTAG-CTCGTCGAGATAG
1 TAAACACGGAGTAGTCT-ATCGAGATAG
* * *
14362878 TAAACA-TGAGGTAGTCTATCGAAACAG
1 TAAACACGGA-GTAGTCTATCGAGATAG
14362905 TAAACACGGAGTAGTC
1 TAAACACGGAGTAGTC
14362921 CGTTGGGACA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.07
27 49 0.86
28 4 0.07
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (27 bp):
TAAACACGGAGTAGTCTATCGAGATAG
Found at i:14362936 original size:54 final size:54
Alignment explanation
Indices: 14362816--14362939 Score: 142
Period size: 54 Copynumber: 2.3 Consensus size: 54
14362806 TAGAGTCCAC
* * * *
14362816 CGGGACAATAAACACGGGGTAGTCTATTGAGATAGTAAACACAGAGTAGCTCGT
1 CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCTCGT
* * * * *
14362870 CGAGATAGTAAACATGAGGTAGTCTATCGAAACAGTAAACACGGAGTAG-TCCGT
1 CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCT-CGT
*
14362924 TGGGACAATAAACACG
1 CGGGACAATAAACACG
14362940 GGGATTACGA
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (54 bp):
CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCTCGT
Found at i:14373539 original size:9 final size:10
Alignment explanation
Indices: 14373521--14373545 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14373511 AAGCTCAACG
14373521 AAAAGAAAAA
1 AAAAGAAAAA
14373531 AAAAGAAAAA
1 AAAAGAAAAA
14373541 AAAAG
1 AAAAG
14373546 GAAACAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:14375663 original size:108 final size:109
Alignment explanation
Indices: 14375385--14375809 Score: 660
Period size: 109 Copynumber: 3.9 Consensus size: 109
14375375 AAAATTCAAG
* * * * *
14375385 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
14375449 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAG-TTTTTAAA
14375495 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* *
14375560 TTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAAGTTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* * * * *
14375603 AGGATATTAAG-TCATTTGGTGGAACAAGAAATCGAAACCCAGTACCTTAGGGCACATTCCTAGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
14375667 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
*
14375712 AGGATATTTAGCTATTTGTTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* *
14375777 TTTCCAAACGTAAAATATTGCCTTA-TTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAA
14375810 TATTTTCCTT
Statistics
Matches: 289, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
107 1 0.00
108 97 0.34
109 107 0.37
110 83 0.29
111 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:14375783 original size:217 final size:218
Alignment explanation
Indices: 14375412--14375809 Score: 735
Period size: 217 Copynumber: 1.8 Consensus size: 218
14375402 GGCTAAACGT
* * *
14375412 GAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACATTCCTAGAATTTCCAAACGCAAAACATTGCCTTATT
14375477 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
14375542 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
14375607 TATTAAGTCATTTGGTGGAACAA
196 TATTAAGTCATTTGGTGGAACAA
*
14375630 GAAATCGAAACCCAGTACCTTAGGGCACATTCCTAGAATTTCCAAACGCAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACATTCCTAGAATTTCCAAACGCAAAACATTGCCTTATT
*
14375695 TTTGAAAAG-TTTTTAAAAGGATATTTAGCTATTTGTTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
*
14375759 TAGGGCACGTTCCTCGAATTTCCAAACGTAAAATATTGCCTTATTTTGAAA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
14375810 TATTTTCCTT
Statistics
Matches: 174, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
217 104 0.60
218 70 0.40
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
GAAATCGAAACCCAGCACCTTAGGGCACATTCCTAGAATTTCCAAACGCAAAACATTGCCTTATT
TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
TATTAAGTCATTTGGTGGAACAA
Found at i:14376159 original size:15 final size:16
Alignment explanation
Indices: 14376139--14376174 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
14376129 TAAATATGCG
14376139 TATATA-TAAAAAAAT
1 TATATATTAAAAAAAT
*
14376154 TATATATTAAATAAAT
1 TATATATTAAAAAAAT
14376170 TATAT
1 TATAT
14376175 GTAAGGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATATATTAAAAAAAT
Found at i:14376309 original size:3 final size:3
Alignment explanation
Indices: 14376236--14376298 Score: 58
Period size: 3 Copynumber: 20.7 Consensus size: 3
14376226 TTAAAATTAC
* * *
14376236 ATA ATA ATTA TTA ATGA A-A AT- ATA ATG ATG ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14376281 ATA ATA ATA ATAA ATA AT
1 ATA ATA ATA AT-A ATA AT
14376299 GCACATAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
2 4 0.08
3 40 0.78
4 7 0.14
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14377014 original size:18 final size:18
Alignment explanation
Indices: 14376974--14377015 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
14376964 GAAATAAATC
* *
14376974 AGAAATAAAAAAAACTTG
1 AGAAATAAAAAAAAATAG
*
14376992 CGAAATAAAAAAAAATAG
1 AGAAATAAAAAAAAATAG
14377010 AGAAAT
1 AGAAAT
14377016 CAAGTGGCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (18 bp):
AGAAATAAAAAAAAATAG
Found at i:14378111 original size:44 final size:44
Alignment explanation
Indices: 14378005--14378817 Score: 257
Period size: 44 Copynumber: 18.6 Consensus size: 44
14377995 CTCGGCCTGT
* ** * *
14378005 TCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCATTCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * *
14378046 TCTATTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * *
14378090 TCCACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTTAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTTAATCTGC
* * **
14378134 TCCGCTGTAATCTCAGGGAGATAAGA-CCTGATACGATCTTTGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT--T--TAT-TTTAATCTGC
* *** *
14378182 TCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * ** *
14378223 TCTACTG-AAACTTCAGAGAGATAAG-TCCTTGGTTTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * *
14378266 TCCACTGTAATCTCAGGAAGATAGGAT--TACTAGCTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTTAATCTGC
* * ** **
14378310 TTCGCTGTAATCTCAGGGAGATAAGAT-CTGAAATCTTTCGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTT-AATCTGC
** * * * *
14378356 TCCACTGTAATCTCAGGGAGATAAGA-CC--TGGTGTGACCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * **
14378397 TCTACTGTAA-CTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * *
14378441 TCCACTGTAATCTCAGGGAGATAGGATTAC-TAACTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTTAATCTGC
* * **** *
14378485 TCCGCTGTAATCTCAGGGAGATAAGAT-C-TGA-CACGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * **
14378526 TCTATTGTAA-CTTCAGAGAGATAATATCCTTGGT-TTTTAATCCAC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTT--TATTTTAATCTGC
* * * * * *
14378571 TCCACTGTAATCTCAGGGAGATAGGATTAC-TAACTTCAATTTGC
1 TCCACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTTAATCTGC
* * **** ** **
14378615 TCCGCTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTAT
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATT-TT-AATCTGC
* ** **** *
14378661 TCCACTGTAATCTCAGAGAGATAAGA-CC-AGA-CGCGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
** * * **
14378702 TCTGCTGTAA-CTTCAGAGAGATAAGATCTTTTATTTTAATCCAC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * *
14378746 TCCACTGTAATCTCAGGGAGATAGGATTAC-TAACTTCAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTTAATCTGC
**
14378790 TCTGCTGTAATCTCAGGGAGATAAGATC
1 TCCACTGTAATCTCAGGGAGATAAGATC
14378818 TGACACGATC
Statistics
Matches: 559, Mismatches: 164, Indels: 96
0.68 0.20 0.12
Matches are distributed among these distances:
40 7 0.01
41 126 0.23
42 15 0.03
43 32 0.06
44 245 0.44
45 39 0.07
46 59 0.11
48 36 0.06
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
Found at i:14378498 original size:175 final size:176
Alignment explanation
Indices: 14377996--14378515 Score: 832
Period size: 175 Copynumber: 3.0 Consensus size: 176
14377986 CTAAAATTCC
* * * *
14377996 TCGGCCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGATGCATTCTACTCTATTGTAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGGA-TCTACTCTACTGTAACTTCA
*
14378061 GAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
* *
14378126 TAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATACGATCTT
130 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATAC-ATCTT
*
14378174 T-GGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATG-GATCTACTCTACTGTAACTTCA
** *
14378238 GAGAGATAAG-TCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGAAGATAGGATTACTAGCTT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
*
14378302 CAATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGA-A-ATCTT
130 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACATCTT
* *
14378347 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATG-GATCTACTCTACTGTAACTTCA
* *
14378412 GAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
14378477 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
130 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
14378516 CACGATCTAC
Statistics
Matches: 318, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
173 6 0.02
174 69 0.22
175 88 0.28
176 87 0.27
177 66 0.21
178 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (176 bp):
TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGGATCTACTCTACTGTAACTTCAG
AGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACATCTT
Found at i:14378526 original size:129 final size:130
Alignment explanation
Indices: 14378351--14378642 Score: 460
Period size: 130 Copynumber: 2.3 Consensus size: 130
14378341 AATCTTTCGG
* * ****
14378351 TCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGA
14378416 GATAAGATCCTT-CATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
66 GATAAGATCCTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
* *
14378480 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGA
* **
14378545 GATAATATCCTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
66 GATAAGATCCTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
* *
14378610 TTTGCTCCGCTGTAATCTCAGGGAGACAAGATC
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
14378643 GGAAATTATT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 68 0.46
130 81 0.54
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (130 bp):
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGA
GATAAGATCCTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
Found at i:14378597 original size:305 final size:303
Alignment explanation
Indices: 14378177--14378861 Score: 1093
Period size: 305 Copynumber: 2.3 Consensus size: 303
14378167 CGATCTTTGG
* * ** *
14378177 TCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
* * *
14378242 GATAAGTCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGAAGATAGGATTACTAGCTTCAATC
66 GATAAATCCTTGGTTTTAATCCACTCCACTGTAATCTCAGGAAGATAGGATTACTAACTTCAATC
* * * *
14378307 TGCTTCGCTGTAATCTCAGGGAGATAAGATCTGAAATCT-TTCGGTCTGCTCCACTGTAATCTCA
131 TGCTCCGCTGTAATCTCAGGGAGACAAGATCGGAAAT-TATTCGGTCTACTCCACTGTAATCTCA
* * ** *
14378371 GGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAA
195 GAGAGATAAGACCAGACGCGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAA
14378436 TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
260 TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
*
14378480 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
*
14378545 GATAATATCCTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
66 GATAA-ATCCTTGG-TTTTAATCCACTCCACTGTAATCTCAGGAAGATAGGATTACTAACTTCAA
* *
14378610 TTTGCTCCGCTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTATTCCACTGTAATCTC
129 TCTGCTCCGCTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTACTCCACTGTAATCTC
* * * *
14378675 AGAGAGATAAGACCAGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCTTTTATTTTA
194 AGAGAGATAAGACCAGACGCGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTA
14378740 ATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
259 ATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
*
14378785 TCTGCTCTGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
14378850 GATAAGATCCTT
66 GATAA-ATCCTT
14378862 TATTCAATCA
Statistics
Matches: 351, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
303 64 0.18
304 8 0.02
305 279 0.79
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (303 bp):
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
GATAAATCCTTGGTTTTAATCCACTCCACTGTAATCTCAGGAAGATAGGATTACTAACTTCAATC
TGCTCCGCTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTACTCCACTGTAATCTCAG
AGAGATAAGACCAGACGCGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAAT
CCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAA
Found at i:14378785 original size:175 final size:176
Alignment explanation
Indices: 14378489--14378817 Score: 536
Period size: 175 Copynumber: 1.9 Consensus size: 176
14378479 ATCTGCTCCG
* * * * *
14378489 CTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGAGATAATATC
1 CTGTAATCTCAGAGAGATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
*
14378554 CTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATTTGCTCCG
66 CTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
14378619 CTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTATTCCA
131 CTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTATTCCA
* *
14378665 CTGTAATCTCAGAGAGATAAGACCAGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGAT-
1 CTGTAATCTCAGAGAGATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
14378729 CTT-TTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCT
66 CTTGGT-TTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCC
*
14378793 GCTGTAATCTCAGGGAGATAAGATC
130 GCTGTAATCTCAGGGAGACAAGATC
14378818 TGACACGATC
Statistics
Matches: 141, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
174 1 0.01
175 83 0.59
176 57 0.40
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (176 bp):
CTGTAATCTCAGAGAGATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCG
CTGTAATCTCAGGGAGACAAGATCGGAAATTATTCGGTCTATTCCA
Found at i:14379111 original size:86 final size:87
Alignment explanation
Indices: 14378880--14379203 Score: 445
Period size: 87 Copynumber: 3.7 Consensus size: 87
14378870 CAGCTTCACT
* * * *
14378880 GCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTCAACGCAGGAAGGCAAGATCT
1 GCAACCGATGGAGACAAAGCTTTGTTTTCAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCT
* * *
14378945 GCTATCTTCAATCAGCTCCACT
66 GCTATCTTCAACCAGTTCCACC
* * * *
14378967 ACAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCT
1 GCAACCGATGGAGACAAAGCTTTGTTTTCAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCT
*
14379032 GCTATCTTCAACCAGTTCTACC
66 GCTATCTTCAACCAGTTCCACC
* * *
14379054 GCAACCGGTGGAGACAAAGC-TTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCT
1 GCAACCGATGGAGACAAAGCTTTGTTTTCAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCT
14379118 GCTATCTTCAACCAGTTCCACC
66 GCTATCTTCAACCAGTTCCACC
** * *
14379140 GCAACCGATGGAGACAAAGC-TTGTATCTTTGATCTGCTTCACTGTCAAGGCAGGAAGGCAAGAT
1 GCAACCGATGGAGACAAAGCTTTGT-T-TTCAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGAT
14379204 TTGTTGTCTT
Statistics
Matches: 214, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
86 88 0.41
87 95 0.44
88 31 0.14
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (87 bp):
GCAACCGATGGAGACAAAGCTTTGTTTTCAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCT
GCTATCTTCAACCAGTTCCACC
Found at i:14379258 original size:45 final size:45
Alignment explanation
Indices: 14379165--14379258 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 45
14379155 AAAGCTTGTA
* * * * **
14379165 TCTTTGATCTGCTTCACTGTCAAGGCAGGAAGGCAAGATTTGTTG
1 TCTTTGATCTGCTTCACAGTCAAGACAGGAAAGCAAGATCTGACG
14379210 TCTTTGATCTGCTTCACAGTC-AGTACAGGAAAGCAAGATCTGACG
1 TCTTTGATCTGCTTCACAGTCAAG-ACAGGAAAGCAAGATCTGACG
14379255 TCTT
1 TCTT
14379259 CATTGATCTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.05
45 40 0.95
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (45 bp):
TCTTTGATCTGCTTCACAGTCAAGACAGGAAAGCAAGATCTGACG
Found at i:14390112 original size:22 final size:22
Alignment explanation
Indices: 14390084--14390165 Score: 89
Period size: 22 Copynumber: 3.7 Consensus size: 22
14390074 CAGGGTATCA
14390084 CTAGGGTTCAGTGTAGTTCTAC
1 CTAGGGTTCAGTGTAGTTCTAC
* *
14390106 CTAGGG-TGAGTCCCTAAGGTTC-A-
1 CTAGGGTTCAGT--GT-A-GTTCTAC
14390129 CTAGGGTTCAGTGTAGTTCTAC
1 CTAGGGTTCAGTGTAGTTCTAC
14390151 CTAGGGTTCAGTGTA
1 CTAGGGTTCAGTGTA
14390166 TCACTAGGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
20 4 0.08
21 6 0.12
22 22 0.45
23 7 0.14
24 6 0.12
25 4 0.08
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (22 bp):
CTAGGGTTCAGTGTAGTTCTAC
Found at i:14390174 original size:18 final size:19
Alignment explanation
Indices: 14390126--14390175 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 19
14390116 TCCCTAAGGT
14390126 TCACTAGGGTTCAGTGTAG
1 TCACTAGGGTTCAGTGTAG
14390145 TTCTACCTAGGGTTCAGTGTA-
1 -TC-A-CTAGGGTTCAGTGTAG
14390166 TCACTAGGGT
1 TCACTAGGGT
14390176 ATCACTATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.25
19 1 0.04
20 4 0.14
21 1 0.04
22 15 0.54
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (19 bp):
TCACTAGGGTTCAGTGTAG
Found at i:14391068 original size:108 final size:109
Alignment explanation
Indices: 14390801--14391225 Score: 651
Period size: 109 Copynumber: 3.9 Consensus size: 109
14390791 AAAATTCAAG
* * * * * * *
14390801 AGGATATTTAGCAATTTGG-CTAAACGTGAAATTGAAACCCAGCACCTTAGGGTACGTTTCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
14390865 ATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAG-TTTTTAAA
14390911 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* * *
14390976 TTTCCAAACGCAAAATATTGCCATA-TTTTGAAAAGTTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* * *
14391019 AGGATATTAAG-TCATTTGGTGGAACAAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
14391083 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
*
14391128 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAATCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
14391193 TTTCCAAACGCAAAATATTGCCTTA-TTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAA
14391226 TATTTTCCTT
Statistics
Matches: 289, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
107 1 0.00
108 98 0.34
109 110 0.38
110 79 0.27
111 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:14391192 original size:217 final size:218
Alignment explanation
Indices: 14390828--14391225 Score: 726
Period size: 217 Copynumber: 1.8 Consensus size: 218
14390818 GGCTAAACGT
* * * *
14390828 GAAATTGAAACCCAGCACCTTAGGGTACGTTTCTCGAATTTCCAAACGTAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
14390893 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
14390958 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
14391023 TATTAAGTCATTTGGTGGAACAA
196 TATTAAGTCATTTGGTGGAACAA
*
14391046 GAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
14391111 TTTGAAAAG-TTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAATCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
*
14391175 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAA
14391226 TATTTTCCTT
Statistics
Matches: 173, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
217 104 0.60
218 69 0.40
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
GAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
TATTAAGTCATTTGGTGGAACAA
Found at i:14394710 original size:27 final size:26
Alignment explanation
Indices: 14394643--14394740 Score: 133
Period size: 28 Copynumber: 3.6 Consensus size: 26
14394633 TAATGAGATT
14394643 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATT-AA
*
14394670 ATGCACTAAGTGTGCGAGTATAATGTAA
1 A-GCACTAAGTGTGCGAGTTTAAT-TAA
*
14394698 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTA--A
14394726 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
14394741 TACTTATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
26 2 0.03
27 21 0.33
28 40 0.62
29 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGAGTTTAATTAA
Found at i:14395793 original size:47 final size:47
Alignment explanation
Indices: 14395727--14396061 Score: 397
Period size: 47 Copynumber: 7.1 Consensus size: 47
14395717 CCAAATTTGA
14395727 TGTCC-ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* *
14395773 TGTCCAATTTTGAATGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * *
14395820 TGTCCAATTTTGACTGTACTAATGCTGTCCATTTTAATGTATGATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
*
14395867 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * * * * *
14395914 TGTCCGATTATGAGTATATTTAAGCTGTCTAATTTGATGTATAATGA
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * *
14395961 TGTCCAATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * ** *
14396008 TGTCC-ATTTTGAGCATATT-ATTGCTGTCCAATTTGTTGAATAATTGC
1 TGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGC
14396055 TGTCCAA
1 TGTCCAA
14396062 AACAGGGTTG
Statistics
Matches: 258, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 36 0.14
47 220 0.85
48 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
Found at i:14396057 original size:23 final size:22
Alignment explanation
Indices: 14395984--14396061 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 22
14395974 GTATATTTAA
* *
14395984 GCTGTCTAATTTGATGTATAA-T
1 GCTGTCCAATTTG-TGAATAATT
* * *
14396006 GCTGTCCATTTTGAGCATATTATT
1 GCTGTCCAATTTGTG-A-ATAATT
14396030 GCTGTCCAATTTGTTGAATAATT
1 GCTGTCCAATTTG-TGAATAATT
14396053 GCTGTCCAA
1 GCTGTCCAA
14396062 AACAGGGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
21 1 0.02
22 11 0.25
23 17 0.39
24 14 0.32
25 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (22 bp):
GCTGTCCAATTTGTGAATAATT
Found at i:14402541 original size:27 final size:26
Alignment explanation
Indices: 14402474--14402571 Score: 133
Period size: 28 Copynumber: 3.6 Consensus size: 26
14402464 TAATGAGATT
14402474 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATT-AA
*
14402501 ATGCACTAAGTGTGCGAGTATAATGTAA
1 A-GCACTAAGTGTGCGAGTTTAAT-TAA
*
14402529 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTA--A
14402557 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
14402572 TACTTATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
26 2 0.03
27 21 0.33
28 40 0.62
29 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGAGTTTAATTAA
Found at i:14403624 original size:47 final size:47
Alignment explanation
Indices: 14403558--14403892 Score: 406
Period size: 47 Copynumber: 7.1 Consensus size: 47
14403548 CCAAATTTGA
14403558 TGTCC-ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* *
14403604 TGTCCAATTTTGAATGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * *
14403651 TGTCCAATTTTGACTGTACTAATGCTGTCCATTTTAATGTATGATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
*
14403698 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * * * *
14403745 TGTCCGATTATGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * *
14403792 TGTCCAATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * ** *
14403839 TGTCC-ATTTTGAGCATATT-ATTGCTGTCCAATTTGTTGAATAATTGC
1 TGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGC
14403886 TGTCCAA
1 TGTCCAA
14403893 ACAGGGTTGG
Statistics
Matches: 260, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 36 0.14
47 222 0.85
48 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
Found at i:14403888 original size:23 final size:23
Alignment explanation
Indices: 14403579--14403892 Score: 121
Period size: 22 Copynumber: 13.4 Consensus size: 23
14403569 AGTATATTGA
* * *
14403579 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
* *
14403601 TGCTGTCCAATTTTGAATGTATTGA-
1 TGCTGTCCAA-TTTG-ATG-AATAAT
* * *
14403626 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
*
14403648 TGCTGTCCAATTTTGACTGTACTAA-
1 TGCTGTCCAA-TTTGA-TG-AATAAT
* * * *
14403673 TGCTGTCCATTTTAATGTATGA-
1 TGCTGTCCAATTTGATGAATAAT
* *
14403695 TGCTGTCCAATTTTGAGTGTATTGA-
1 TGCTGTCCAA-TTTGA-TG-AATAAT
* * *
14403720 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
* * *
14403742 TGCTGTCCGATTATGA-GTATATT
1 TGCTGTCCAATT-TGATGAATAAT
* *
14403765 TAAGCTGTCTAATTTGATGTATAA-
1 T--GCTGTCCAATTTGATGAATAAT
* *
14403789 TGCTGTCCAATTTTGA-GTATATT
1 TGCTGTCCAA-TTTGATGAATAAT
* *
14403812 TAAGCTGTCTAATTTGATGTATAA-
1 T--GCTGTCCAATTTGATGAATAAT
* *
14403836 TGCTGTCCATTTTGA-GCATATTAT
1 TGCTGTCCAATTTGATG-A-ATAAT
*
14403860 TGCTGTCCAATTTGTTGAATAAT
1 TGCTGTCCAATTTGATGAATAAT
14403883 TGCTGTCCAA
1 TGCTGTCCAA
14403893 ACAGGGTTGG
Statistics
Matches: 223, Mismatches: 46, Indels: 45
0.71 0.15 0.14
Matches are distributed among these distances:
21 1 0.00
22 73 0.33
23 44 0.20
24 42 0.19
25 63 0.28
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.44
Consensus pattern (23 bp):
TGCTGTCCAATTTGATGAATAAT
Found at i:14409933 original size:31 final size:31
Alignment explanation
Indices: 14409898--14409958 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
14409888 TATAAAATAG
* *
14409898 TTATTAAATTATTTGAAAGTT-TTCATTTAAA
1 TTATTAAAATATTCGAAAGTTGTT-ATTTAAA
14409929 TTATTAAAATATTCGAAAGTTGTTATTTAA
1 TTATTAAAATATTCGAAAGTTGTTATTTAA
14409959 TTCATTGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.49
Consensus pattern (31 bp):
TTATTAAAATATTCGAAAGTTGTTATTTAAA
Found at i:14413694 original size:13 final size:13
Alignment explanation
Indices: 14413676--14413702 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14413666 GGGCGCTTAC
14413676 CTGGTTTCGAGCG
1 CTGGTTTCGAGCG
14413689 CTGGTTTCGAGCG
1 CTGGTTTCGAGCG
14413702 C
1 C
14413703 CGTGCGCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.26, G:0.37, T:0.30
Consensus pattern (13 bp):
CTGGTTTCGAGCG
Found at i:14415904 original size:23 final size:24
Alignment explanation
Indices: 14415855--14415905 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
14415845 TTTTTAGAAG
**
14415855 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAACATAATAT
*
14415879 ATTTAGTATTT-TTAACATAATTT
1 ATTTAGTATTTATTAACATAATAT
14415902 ATTT
1 ATTT
14415906 GACCTACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (24 bp):
ATTTAGTATTTATTAACATAATAT
Found at i:14416615 original size:25 final size:23
Alignment explanation
Indices: 14416574--14416633 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
14416564 TATGCGGAAT
14416574 AACATGAGCACAAAAGTACTAAGA
1 AACATGAGCACAAAAGTACT-AGA
** * *
14416598 AATCATGAGCACTGAAGTGCTGGA
1 AA-CATGAGCACAAAAGTACTAGA
14416622 AACATGAGCACA
1 AACATGAGCACA
14416634 TGAGTATCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 9 0.30
24 6 0.20
25 15 0.50
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (23 bp):
AACATGAGCACAAAAGTACTAGA
Found at i:14417886 original size:46 final size:46
Alignment explanation
Indices: 14417776--14418076 Score: 520
Period size: 46 Copynumber: 6.6 Consensus size: 46
14417766 CTTACGTATG
* *
14417776 ATCACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
*
14417819 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
14417865 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
14417911 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
*
14417957 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
* *
14418003 ATCACTTATCATTTTGTCACTTGATTAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
14418049 ATCACTTATCACTTTGTCAC-TGATCAGA
1 ATCACTTATCACTTTGTCACTTGATCAGA
14418077 AGTATTCAAA
Statistics
Matches: 245, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
43 11 0.04
44 5 0.02
45 27 0.11
46 202 0.82
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (46 bp):
ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
Found at i:14418918 original size:14 final size:14
Alignment explanation
Indices: 14418899--14418929 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
14418889 CAAATAGTAC
14418899 AGTTTATTCTTTAA
1 AGTTTATTCTTTAA
14418913 AGTTTATTCTTTAA
1 AGTTTATTCTTTAA
14418927 AGT
1 AGT
14418930 CTCCCCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (14 bp):
AGTTTATTCTTTAA
Found at i:14450708 original size:46 final size:45
Alignment explanation
Indices: 14450641--14450847 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 45
14450631 TTTGAGTACT
* * *
14450641 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAG-TTTAGCTACACTTA
14450687 TCTGATCAAGTGAAAAAGTG---A-T-A-AG--T-GCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTTAGCTACACTTA
* *
14450723 TCTGATCAAGTGACAAAGTGATAAGTGATAGTTTCGGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTT-AGCTACACTTA
*
14450769 TCTGATCAAGTGACAAGTGAAAAGTAATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTG---A---AAAAGTGATAAGTGATAG-TTTAGCTACACTTA
* *
14450821 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
14450848 GCTACACTTA
Statistics
Matches: 134, Mismatches: 10, Indels: 34
0.75 0.06 0.19
Matches are distributed among these distances:
36 29 0.22
37 1 0.01
39 1 0.01
40 3 0.02
41 1 0.01
42 3 0.02
43 1 0.01
44 1 0.01
46 52 0.39
49 2 0.01
52 37 0.28
53 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTTAGCTACACTTA
Found at i:14450718 original size:36 final size:36
Alignment explanation
Indices: 14450677--14450749 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
14450667 GGTAGCTTTA
14450677 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
14450713 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
14450749 G
1 G
14450750 ATAGTTTCGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:14450799 original size:52 final size:52
Alignment explanation
Indices: 14450729--14450846 Score: 166
Period size: 52 Copynumber: 2.2 Consensus size: 52
14450719 CTTATCTGAT
* * *
14450729 CAAGTGACAAAGTGATAAGTGATAG-TTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTAATAAGTGATAGCTTT-AGCTACACTTATCTGATCAAGAGA
14450782 CAAGTGAAAAGTAATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTAATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
*
14450834 CAAAGTGATAAGT
1 C-AAGTGAAAAGT
14450847 GGCTACACTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
52 39 0.66
53 20 0.34
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (52 bp):
CAAGTGAAAAGTAATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
Found at i:14450855 original size:37 final size:37
Alignment explanation
Indices: 14450811--14450919 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
14450801 GATAGCTTTA
14450811 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
14450848 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
14450885 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
14450920 ATCATACGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 12 0.17
36 4 0.06
37 53 0.77
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:14452462 original size:5 final size:5
Alignment explanation
Indices: 14452452--14452477 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14452442 TTCACACACA
14452452 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
14452478 TGTACACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:14452561 original size:3 final size:3
Alignment explanation
Indices: 14452553--14452590 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14452543 TTAAAAGAGT
14452553 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14452591 TTGAAAACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14453505 original size:14 final size:15
Alignment explanation
Indices: 14453481--14453521 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
14453471 TTTCGAAAAG
14453481 AGAAA-AAAAATA-A
1 AGAAAGAAAAATAGA
14453494 AGAAAGAAAAATAGA
1 AGAAAGAAAAATAGA
14453509 A-AAAG-AAAATAGA
1 AGAAAGAAAAATAGA
14453522 TATACCGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.50
14 11 0.42
15 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (15 bp):
AGAAAGAAAAATAGA
Found at i:14457610 original size:44 final size:44
Alignment explanation
Indices: 14457493--14458177 Score: 391
Period size: 44 Copynumber: 15.8 Consensus size: 44
14457483 TCGTGTCAAG
* ** **
14457493 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTTAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-ATAGTA-A
* *
14457539 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAA
* * * * *
14457583 TCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAATGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-AGTAA
* * * * * * *
14457627 TCTTATCTCTCT-AAAGTTATAGTAGAGTAGATCG-TG-TCAG--A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTAA
* *
14457668 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAA
* * ** * *
14457712 TCTTATCTCCCTAAGATTACGGTGGAGTGGATT-AAAATGAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGTAA
* * * * * *
14457756 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-CG-TCAG--G
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTAA
* * * **
14457797 TCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTTAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-ATAGTA-A
* * *
14457843 TCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAA
* * *
14457887 TCTTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGTAA
* * * * *
14457931 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TG-TCAG--A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTAA
* * *
14457972 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAA
* ** * *
14458016 TCATATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT--AGTAA
* * * * *
14458060 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TG-TCA--AA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGAT-AGTAA
* **
14458101 TCTTATCTTCCTGAGATTACAGCAGAG-ACGATTGAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCA-GATTGAAGATAGTAA
* *
14458145 TCCTATCTCCCTGAGATTACAGTGGAGCGGATT
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT
14458178 AAAATAAAGG
Statistics
Matches: 483, Mismatches: 117, Indels: 80
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 105 0.22
42 18 0.04
43 25 0.05
44 256 0.53
45 11 0.02
46 67 0.14
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAA
Found at i:14457691 original size:129 final size:129
Alignment explanation
Indices: 14457536--14457864 Score: 478
Period size: 129 Copynumber: 2.5 Consensus size: 129
14457526 GAAGAATTTT
* *
14457536 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCTTATCTCCCTGAGATT
* * *
14457601 ACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTAAAGTTATAGTAGAGTAGATCGTGTC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCGTC
* *
14457665 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCTCCCTAAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCTTATCTCCCTGAGATT
* * * *
14457730 ACGGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCGTC
* * * * * **
14457794 AGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-ATAGTA-ATCTTATCTCCCTGAGA
14457859 TTACAG
64 TTACAG
14457865 CGGAACAGAT
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
129 154 0.87
130 3 0.02
131 21 0.12
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (129 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCTTATCTCCCTGAGATT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCGTC
Found at i:14457815 original size:85 final size:85
Alignment explanation
Indices: 14457712--14458343 Score: 446
Period size: 85 Copynumber: 7.3 Consensus size: 85
14457702 AAGTTAGTAA
* * ** *
14457712 TCTTATCTCCCTAAGATTACGGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
*
14457777 GTAGAGTAGATCGCGTCAGG
66 GTAGAGTAGATCGAGTCAGG
* * * ** *
14457797 TCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTTA-GATCTTATCTCCCTG-AGAT
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAG-T
** ** * *
14457860 TACAGCGGAACAGATTGAAG-CTAGTAA
62 TACAGTAGAGTAGATCG-AGTC-AG--G
*
14457887 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
* *
14457952 GTAGAGTAGATCGTGTCAGA
66 GTAGAGTAGATCGAGTCAGG
* * * * ** * *
14457972 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAATCATATCTCCCTG-AGATTAC
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAG-TTAC
* * ** * *
14458036 AGTGGAGTGGATTAAAATAAAGG
65 AGTAGAGTAGA-TCGAGT-CAGG
* * * **** *
14458059 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGTGTCAA--ATCTTATCT-TCCTG-AGAT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT-CTGAAG-T
* * *
14458118 TACAGCAGAG-ACGATTGAAGAT-AGTAA
62 TACAGTAGAGTA-GATCG-AG-TCAG--G
* * *
14458145 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
*
14458210 GTAGAGAAGATCGTA-TCAGG
66 GTAGAGTAGATCG-AGTCAGG
* * *
14458230 TCTTATCTCCCTGATATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
*
14458295 GTAGCGTAGATCGCA-TCAGG
66 GTAGAGTAGATCG-AGTCAGG
* * * *
14458315 TTTTACCTCCCTGTGGTTACAGTGGAGCA
1 TCTTATCTCCCTGAGATTACAGTGGAGCA
14458344 CATTGAAGCT
Statistics
Matches: 424, Mismatches: 93, Indels: 60
0.73 0.16 0.10
Matches are distributed among these distances:
84 5 0.01
85 237 0.56
86 14 0.03
87 45 0.11
88 86 0.20
89 9 0.02
90 28 0.07
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (85 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
GTAGAGTAGATCGAGTCAGG
Found at i:14457846 original size:175 final size:174
Alignment explanation
Indices: 14457665--14458042 Score: 589
Period size: 175 Copynumber: 2.2 Consensus size: 174
14457655 AGATCGTGTC
*
14457665 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCTCCCTAAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTAAGATT
* * *
14457730 ACGGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCA
* * * *
14457795 GGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATT-TT
131 GATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAG--TTAAT
* *
14457840 AGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAATCTTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTAAGATT
*
14457905 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCA
* *
14457970 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAAT
131 GATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGTTAAT
* *
14458014 A-ATCATATCTCCCTGAGATTACAGTGGAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAG
14458043 TGGATTAAAA
Statistics
Matches: 186, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
173 27 0.15
174 2 0.01
175 157 0.84
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTAAGATT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCA
GATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGTTAAT
Found at i:14457992 original size:129 final size:129
Alignment explanation
Indices: 14457840--14458262 Score: 677
Period size: 129 Copynumber: 3.3 Consensus size: 129
14457830 GAAGAATTTT
* *
14457840 AGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAATCTTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCATATCTCCCTGAGATT
14457905 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
* * *
14457969 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAATCATATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCATATCTCCCTGAGATT
*
14458034 ACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
* * * *
14458098 AAATCTTATCTTCCTGAGATTACAGCAGAGAC-GATTGAAGATAGTAATCCTATCTCCCTGAGAT
1 AGATCTTATCTCCCTGAGATTACAGCGGA-ACAGATTGAAGATAGTAATCATATCTCCCTGAGAT
* * *
14458162 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGAAGATCGTATC
65 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
* * * *
14458227 AGGTCTTATCTCCCTGATATTACAGTGGAGCAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAACAGATT
14458263 AAAACAAAGG
Statistics
Matches: 269, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
128 1 0.00
129 267 0.99
130 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (129 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGATAGTAATCATATCTCCCTGAGATT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTC
Found at i:14457996 original size:304 final size:304
Alignment explanation
Indices: 14457446--14458166 Score: 1198
Period size: 304 Copynumber: 2.4 Consensus size: 304
14457436 GGAGCGGAAG
* *
14457446 AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTATCTCCCTGAGATT
1 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
* *
14457511 ACAGTGGAACAGACCGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
66 ACAGTGGAACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAG
*
14457576 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTAA
131 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
*
14457641 AGTTATAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
196 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
* * *
14457706 TAGTAATCTTATCTCCCTAAGATTACGGTGGAGTGGATTAAAAT
261 TAATAATCATATCTCCCTAAGATTACAGTGGAGTGGATTAAAAT
* * *
14457750 GAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATT
1 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
14457815 ACAGTGGAACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAG
66 ACAGTGGAACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAG
* *
14457880 CTAGTAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA
131 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
14457945 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
196 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
*
14458010 TAATAATCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
261 TAATAATCATATCTCCCTAAGATTACAGTGGAGTGGATTAAAAT
*
14458054 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAATCTTATCTT-CCTGAGAT
1 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAGTCTTAT-TTCCCTGAGAT
** * ** *
14458118 TACAGCAGAGAC-GATTGAAG-ATAGTA-ATCCTATCTCCCTGAGATTACAG
65 TACAGTGGA-ACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGATTACAG
14458167 TGGAGCGGAT
Statistics
Matches: 390, Mismatches: 25, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
302 22 0.06
303 4 0.01
304 360 0.92
305 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (304 bp):
AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
ACAGTGGAACAGACTGAAGAATTTTAGATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAG
CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
TAATAATCATATCTCCCTAAGATTACAGTGGAGTGGATTAAAAT
Found at i:14458294 original size:44 final size:44
Alignment explanation
Indices: 14458161--14458296 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
14458151 CTCCCTGAGA
* * **
14458161 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAG
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
* * *** *
14458205 TTACAGTAGAGAAGATCGTATC--AGG-TCTTATCTC-CCTGATA-
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCC-GA-AG
14458246 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
14458290 TTACAGT
1 TTACAGT
14458297 AGCGTAGATC
Statistics
Matches: 69, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.38
42 4 0.06
43 4 0.06
44 32 0.46
45 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
Found at i:14464739 original size:13 final size:13
Alignment explanation
Indices: 14464723--14464770 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
14464713 ATTTATTTGA
*
14464723 TTTAATTATTGTT
1 TTTAATTATTATT
* *
14464736 TTTAAATATTATA
1 TTTAATTATTATT
14464749 TTTAATATATTATT
1 TTTAAT-TATTATT
14464763 TTT-ATTAT
1 TTTAATTAT
14464771 ATTCAATAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 3 0.10
13 17 0.59
14 9 0.31
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
TTTAATTATTATT
Found at i:14464760 original size:14 final size:14
Alignment explanation
Indices: 14464722--14464773 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
14464712 TATTTATTTG
*
14464722 ATTTAAT-TATTGT
1 ATTTAATATATTAT
*
14464735 TTTTAA-ATATTAT
1 ATTTAATATATTAT
14464748 ATTTAATATATTAT
1 ATTTAATATATTAT
* *
14464762 TTTTATTATATT
1 ATTTAATATATT
14464774 CAATAGAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
13 15 0.47
14 17 0.53
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
ATTTAATATATTAT
Found at i:14465116 original size:9 final size:9
Alignment explanation
Indices: 14465102--14465126 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14465092 ATTTTTAAAA
14465102 ATTAAAATT
1 ATTAAAATT
14465111 ATTAAAATT
1 ATTAAAATT
14465120 ATTAAAA
1 ATTAAAA
14465127 AAGTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTAAAATT
Found at i:14476751 original size:143 final size:143
Alignment explanation
Indices: 14476493--14476764 Score: 499
Period size: 143 Copynumber: 1.9 Consensus size: 143
14476483 TTTACCTTGA
*
14476493 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTGATGGTGGAGAC
1 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGAGAC
*
14476558 TTGATTCAAGTGTTTGATTATCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGTTATTAGGG
66 TTGATTCAAGTGTTTGATTATCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGGG
14476623 CCTTGTTTTGTAT
131 CCTTGTTTTGTAT
14476636 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGAGAC
1 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGAGAC
* * *
14476701 TTGATTCTAGTGTTTGATTGTCTTATGTTGCCCCACTCGCGCTTTAGGTTTATTGGCTATTAGG
66 TTGATTCAAGTGTTTGATTATCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGG
14476765 AGCATTGGCT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
143 124 1.00
ACGTcount: A:0.17, C:0.18, G:0.24, T:0.42
Consensus pattern (143 bp):
TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGAGAC
TTGATTCAAGTGTTTGATTATCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGGG
CCTTGTTTTGTAT
Found at i:14483259 original size:10 final size:9
Alignment explanation
Indices: 14483220--14483354 Score: 53
Period size: 9 Copynumber: 14.4 Consensus size: 9
14483210 TCCTAAAACA
14483220 TTTT-AATT
1 TTTTAAATT
*
14483228 TTTTAACTT
1 TTTTAAATT
14483237 TCTTTATATATT
1 T-TTTA-A-ATT
14483249 TTTTAGAATT
1 TTTTA-AATT
* *
14483259 TTTGAAA-A
1 TTTTAAATT
* *
14483267 ATATAAA-T
1 TTTTAAATT
*
14483275 TTTGAAATT
1 TTTTAAATT
*
14483284 TTTATAAATA
1 TTT-TAAATT
*
14483294 TTTTGAATT
1 TTTTAAATT
** *
14483303 TTAAAAATA
1 TTTTAAATT
*
14483312 TTTT-GATT
1 TTTTAAATT
14483320 TTTTAAAAATT
1 TTTT--AAATT
14483331 TTTTAAATTTT
1 TTTTAAA--TT
14483342 TTTTAAATT
1 TTTTAAATT
14483351 TTTT
1 TTTT
14483355 TGTAATTTTT
Statistics
Matches: 91, Mismatches: 25, Indels: 21
0.66 0.18 0.15
Matches are distributed among these distances:
8 18 0.20
9 30 0.33
10 18 0.20
11 22 0.24
12 3 0.03
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTAAATT
Found at i:14483304 original size:19 final size:19
Alignment explanation
Indices: 14483273--14483342 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
14483263 AAAAATATAA
*
14483273 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTTAAAAAT
14483293 ATTTTGAA-TTTTAAAAAT
1 ATTTTGAATTTTTAAAAAT
*
14483311 ATTTTGATTTTTTAAAAAT
1 ATTTTGAATTTTTAAAAAT
* *
14483330 TTTTTAAATTTTT
1 ATTTTGAATTTTT
14483343 TTTAAATTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
18 16 0.36
19 22 0.50
20 6 0.14
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:14483333 original size:18 final size:18
Alignment explanation
Indices: 14483281--14483333 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
14483271 AAATTTTGAA
*
14483281 ATTTTTATAAATATTTTG
1 ATTTTTAAAAATATTTTG
*
14483299 AATTTTAAAAATATTTTG
1 ATTTTTAAAAATATTTTG
14483317 ATTTTTTAAAAAT-TTTT
1 A-TTTTTAAAAATATTTT
14483334 TAAATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 21 0.68
19 10 0.32
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
ATTTTTAAAAATATTTTG
Found at i:14483349 original size:11 final size:11
Alignment explanation
Indices: 14483318--14483364 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
14483308 AATATTTTGA
**
14483318 TTTTTTAAAAA
1 TTTTTTAAATT
14483329 TTTTTTAAATT
1 TTTTTTAAATT
14483340 TTTTTTAAATT
1 TTTTTTAAATT
14483351 TTTTTGT-AATT
1 TTTTT-TAAATT
14483362 TTT
1 TTT
14483365 GTTGAGAGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
11 32 0.97
12 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
TTTTTTAAATT
Found at i:14483355 original size:10 final size:10
Alignment explanation
Indices: 14483317--14483355 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14483307 AAATATTTTG
*
14483317 ATTTTTTAAA
1 ATTTTTTTAA
*
14483327 AATTTTTTAA
1 ATTTTTTTAA
14483337 ATTTTTTTTAA
1 A-TTTTTTTAA
14483348 ATTTTTTT
1 ATTTTTTT
14483356 GTAATTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:14485341 original size:25 final size:25
Alignment explanation
Indices: 14485313--14485441 Score: 93
Period size: 25 Copynumber: 5.2 Consensus size: 25
14485303 CACTCTCTCA
** *
14485313 AGCCATATAATGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGAG
* * * **
14485338 AGCCATGTAACAGGAGGCTTATCCG
1 AGCCATATAACAGGAAGCTCATGAG
* *
14485363 AGCCTTATAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATGAG
* * *
14485388 AGCCATA-ATCAGAAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGAG
* *
14485412 AGCCA-ATAACGGGTAGCTC-TGAAG
1 AGCCATATAACAGGAAGCTCATG-AG
14485436 AGCCAT
1 AGCCAT
14485442 GAATCGGGAA
Statistics
Matches: 78, Mismatches: 23, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
23 3 0.04
24 32 0.41
25 43 0.55
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGAG
Found at i:14485510 original size:23 final size:23
Alignment explanation
Indices: 14485434--14485512 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 23
14485424 GTAGCTCTGA
*
14485434 AGAGCCATGAATCGGGAAGCTCC-G
1 AGAGCCAT--ATCGAGAAGCTCCAG
* * *
14485458 ATAGCCGTATATCGAGAAGTTCAAG
1 AGAGCC--ATATCGAGAAGCTCCAG
*
14485483 CGAGCCATATCGAGAAGCTCCAG
1 AGAGCCATATCGAGAAGCTCCAG
14485506 AGAGCCA
1 AGAGCCA
14485513 ATTATCATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
23 21 0.49
24 15 0.35
25 5 0.12
26 2 0.05
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (23 bp):
AGAGCCATATCGAGAAGCTCCAG
Found at i:14487518 original size:32 final size:32
Alignment explanation
Indices: 14487442--14487558 Score: 130
Period size: 32 Copynumber: 3.7 Consensus size: 32
14487432 ATATGTTTTA
* * * * *
14487442 TATATTACAGAATTGATTTATATATAGATA-T
1 TATATTGCCGAATTGAATTGTATATATATACT
* * *
14487473 T-TATAGCCAAATTGAAATGTATATATATACT
1 TATATTGCCGAATTGAATTGTATATATATACT
*
14487504 TATATTGCCGAATTGAATTGTATATGTATACT
1 TATATTGCCGAATTGAATTGTATATATATACT
*
14487536 TATATTGCTGAATTGAATTGTAT
1 TATATTGCCGAATTGAATTGTAT
14487559 TTGTATATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
30 20 0.28
31 3 0.04
32 48 0.68
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.44
Consensus pattern (32 bp):
TATATTGCCGAATTGAATTGTATATATATACT
Found at i:14487572 original size:32 final size:32
Alignment explanation
Indices: 14487482--14487565 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
14487472 TTTATAGCCA
* *
14487482 AATTGAAATGTATATATATACTTATATTGCCG
1 AATTGAATTGTATATGTATACTTATATTGCCG
*
14487514 AATTGAATTGTATATGTATACTTATATTGCTG
1 AATTGAATTGTATATGTATACTTATATTGCCG
*
14487546 AATTGAATTGTATTTGTATA
1 AATTGAATTGTATATGTATA
14487566 TATATATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (32 bp):
AATTGAATTGTATATGTATACTTATATTGCCG
Found at i:14487751 original size:41 final size:40
Alignment explanation
Indices: 14487706--14487830 Score: 106
Period size: 41 Copynumber: 3.0 Consensus size: 40
14487696 ATTTTAGAGG
*
14487706 AGTGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGA
1 AGTGA-TTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
** * *
14487747 AGTGAGAAAACATGTAAGACCATGTCTGGGACATTGGCATTGTA
1 AGT--G-ATTCGTGTAAGACCATGTCTGGGACATTGGCATCG-A
** * * * *
14487791 TTTGATTCGTATAAGACCCTATCTGGGACAGTGGCATCGA
1 AGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
14487831 TATATGTTAA
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.02
41 30 0.46
42 1 0.02
43 30 0.46
44 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (40 bp):
AGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
Found at i:14493591 original size:45 final size:45
Alignment explanation
Indices: 14493522--14493610 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
14493512 AGCCCAACTA
* * * *
14493522 GCATCTCAAATGGATCGATTTCTATTCTCTTCTTTTTTTAGTTTG
1 GCATCTCAAACGGATCGATATCTATTCTCCTCTTGTTTTAGTTTG
*
14493567 GCATCTCAAACGGATTGATATCTATTCTCCTCTTGTTTTAGTTT
1 GCATCTCAAACGGATCGATATCTATTCTCCTCTTGTTTTAGTTT
14493611 AATTTGTGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (45 bp):
GCATCTCAAACGGATCGATATCTATTCTCCTCTTGTTTTAGTTTG
Found at i:14502430 original size:41 final size:41
Alignment explanation
Indices: 14502385--14502486 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
14502375 GCTTAGAGCT
* *
14502385 TAGCAGGCTTATTGCTGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
14502426 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
14502467 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
14502487 TACTGAATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.06
41 51 0.94
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:14505393 original size:27 final size:27
Alignment explanation
Indices: 14505359--14505416 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
14505349 CACTATGTTT
*
14505359 TAATTAAAATGTAGGTAACTTACTTTA
1 TAATTAAAATGTAGATAACTTACTTTA
* *
14505386 TAATTAAAATTTAGATAACTTGCTTTA
1 TAATTAAAATGTAGATAACTTACTTTA
14505413 TAAT
1 TAAT
14505417 ATTTCACACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (27 bp):
TAATTAAAATGTAGATAACTTACTTTA
Found at i:14515672 original size:14 final size:15
Alignment explanation
Indices: 14515646--14515674 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14515636 ATTATATTTA
14515646 TTTATTTACATTAAT
1 TTTATTTACATTAAT
14515661 TTTATTTA-ATTAAT
1 TTTATTTACATTAAT
14515675 CAACACTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTTACATTAAT
Found at i:14516062 original size:19 final size:16
Alignment explanation
Indices: 14516021--14516070 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 16
14516011 TAAAAATTTA
14516021 AAAATAATTATAAAAT
1 AAAATAATTATAAAAT
14516037 AAGAATAATTATATTAAAT
1 AA-AATAATTATA--AAAT
14516056 ATAAATAA-TATAAAA
1 A-AAATAATTATAAAA
14516071 AAGTGCAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.17
17 10 0.33
18 4 0.13
19 10 0.33
20 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
AAAATAATTATAAAAT
Found at i:14517313 original size:16 final size:16
Alignment explanation
Indices: 14517278--14517318 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14517268 AAAATATAGC
*
14517278 ATTATATCTATTGTGT
1 ATTATATCAATTGTGT
14517294 ATTATATCAATTGATG-
1 ATTATATCAATTG-TGT
14517310 ATTA-ATCAA
1 ATTATATCAA
14517319 AAGTGTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 16 0.70
17 2 0.09
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (16 bp):
ATTATATCAATTGTGT
Found at i:14523355 original size:30 final size:31
Alignment explanation
Indices: 14523331--14523389 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
14523321 GTAAATACTC
* **
14523331 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACCAATAGTGTAAATATGA
14523361 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAATAGTGTAAATAT
14523390 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATATGA
Found at i:14526257 original size:37 final size:37
Alignment explanation
Indices: 14526154--14526295 Score: 115
Period size: 37 Copynumber: 3.9 Consensus size: 37
14526144 TAAACAAGAG
* * * * *
14526154 GGAGATGAGCAGGAGTGATTCCCTGCAAAGCAA-GGC
1 GGAGATGAACAGGAATGATTCACTGCAAAGAAATGAC
* * *
14526190 AGAGATGAACAAGAATGATTCACTGTAAAGAAATGAC
1 GGAGATGAACAGGAATGATTCACTGCAAAGAAATGAC
* * * *
14526227 GGAGATGAACAGGATTGATTCTCTACAAAGAATTGAC
1 GGAGATGAACAGGAATGATTCACTGCAAAGAAATGAC
* * * * * *
14526264 GAAAATGAACTGTAAAGATTCTCTGCAAAGAA
1 GGAGATGAACAGGAATGATTCACTGCAAAGAA
14526296 GAAACAAAAT
Statistics
Matches: 83, Mismatches: 22, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
36 26 0.31
37 57 0.69
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (37 bp):
GGAGATGAACAGGAATGATTCACTGCAAAGAAATGAC
Found at i:14527471 original size:25 final size:24
Alignment explanation
Indices: 14527404--14527472 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
14527394 AGTTTTTTTC
* *
14527404 ATAATTTTTTTATTTTTAAAAATT
1 ATAATTTTTTAATTTTTTAAAATT
* *
14527428 ATATATTTTTTACTTTTTTAAATTT
1 ATA-ATTTTTTAATTTTTTAAAATT
14527453 ATAATTTCTTTAATTTTTTA
1 ATAATTT-TTTAATTTTTTA
14527473 TGTTTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 7 0.18
25 31 0.82
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (24 bp):
ATAATTTTTTAATTTTTTAAAATT
Found at i:14528359 original size:28 final size:30
Alignment explanation
Indices: 14528312--14528373 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
14528302 TATTCTTTTT
14528312 AAATAATTTTAATGA-TTTTT-AATTTTAA
1 AAATAATTTTAATGATTTTTTGAATTTTAA
* *
14528340 AAATAATTTTTAT-ATTTTTTTGAATTTTCA
1 AAATAATTTTAATGA-TTTTTTGAATTTTAA
14528370 AAAT
1 AAAT
14528374 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 12 0.41
29 5 0.17
30 11 0.38
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (30 bp):
AAATAATTTTAATGATTTTTTGAATTTTAA
Found at i:14528891 original size:9 final size:9
Alignment explanation
Indices: 14528877--14529042 Score: 60
Period size: 10 Copynumber: 17.4 Consensus size: 9
14528867 AATCATGAAA
14528877 AAAATTTAT
1 AAAATTTAT
14528886 AAAATTTTAT
1 AAAA-TTTAT
14528896 AAAATTTTAT
1 AAAA-TTTAT
14528906 AAAATCGTTA-
1 AAAAT--TTAT
14528916 AAAA--T-T
1 AAAATTTAT
14528922 AAAA-TTATT
1 AAAATTTA-T
*
14528931 AAAATTGAT
1 AAAATTTAT
* *
14528940 ATAAACTAAT
1 A-AAATTTAT
14528950 AAAATATT-T
1 AAAAT-TTAT
14528959 AAAATATTAT
1 AAAAT-TTAT
14528969 AAAAATATT-T
1 -AAAAT-TTAT
*
14528979 AAAATATTTTT
1 -AAA-ATTTAT
*
14528990 AAAAATTATT
1 AAAATTTA-T
*
14529000 AAAAATATATT
1 -AAAATTTA-T
14529011 AAAATTGATAT
1 AAAATT--TAT
14529022 AAAA-TTAT
1 AAAATTTAT
*
14529030 AAAAATTAT
1 AAAATTTAT
14529039 AAAA
1 AAAA
14529043 AAAACTTGAA
Statistics
Matches: 128, Mismatches: 10, Indels: 38
0.73 0.06 0.22
Matches are distributed among these distances:
6 5 0.04
7 1 0.01
8 7 0.05
9 35 0.27
10 51 0.40
11 27 0.21
12 2 0.02
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (9 bp):
AAAATTTAT
Found at i:14528894 original size:10 final size:10
Alignment explanation
Indices: 14528876--14528910 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
14528866 GAATCATGAA
*
14528876 AAAAATTTAT
1 AAAATTTTAT
14528886 AAAATTTTAT
1 AAAATTTTAT
14528896 AAAATTTTAT
1 AAAATTTTAT
14528906 AAAAT
1 AAAAT
14528911 CGTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAATTTTAT
Found at i:14528975 original size:20 final size:20
Alignment explanation
Indices: 14528950--14529007 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
14528940 ATAAACTAAT
14528950 AAAATATTTAAAATATTATA
1 AAAATATTTAAAATATTATA
*
14528970 AAAATATTTAAAATATTTTTA
1 AAAATATTTAAAATA-TTATA
*
14528991 AAAATTATTAAAAATAT
1 AAAA-TATTTAAAATAT
14529008 ATTAAAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 15 0.44
21 9 0.26
22 10 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATATTTAAAATATTATA
Found at i:14529015 original size:10 final size:10
Alignment explanation
Indices: 14528919--14529015 Score: 64
Period size: 11 Copynumber: 9.8 Consensus size: 10
14528909 ATCGTTAAAA
14528919 ATTAAAAT-T
1 ATTAAAATAT
14528928 ATTAAAAT-T
1 ATTAAAATAT
*
14528937 GATATAAACTA-
1 -AT-TAAAATAT
14528948 A-TAAAATAT
1 ATTAAAATAT
14528957 -TTAAAATATT
1 ATTAAAATA-T
*
14528967 ATAAAAATAT
1 ATTAAAATAT
14528977 -TTAAAATATT
1 ATTAAAATA-T
*
14528987 TTTAAAA-ATT
1 ATTAAAATA-T
14528997 ATTAAAAATAT
1 ATT-AAAATAT
14529008 ATTAAAAT
1 ATTAAAAT
14529016 TGATATAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 21
0.73 0.05 0.21
Matches are distributed among these distances:
8 6 0.08
9 23 0.32
10 16 0.22
11 26 0.36
12 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:14529043 original size:9 final size:9
Alignment explanation
Indices: 14528922--14529043 Score: 84
Period size: 9 Copynumber: 12.4 Consensus size: 9
14528912 GTTAAAAATT
*
14528922 AAAATTATT
1 AAAATTATA
14528931 AAAATTGATA
1 AAAATT-ATA
* *
14528941 TAAACTAATA
1 -AAAATTATA
14528951 AAATATT-TA
1 AAA-ATTATA
14528960 AAATATTATA
1 AAA-ATTATA
*
14528970 AAAATATTTA
1 AAAAT-TATA
*
14528980 AAATATTTTTA
1 AAA-A-TTATA
14528991 AAAATTATTA
1 AAAATTA-TA
*
14529001 AAAATATATT
1 AAAAT-TATA
14529011 AAAATTGATA
1 AAAATT-ATA
14529021 TAAAATTATA
1 -AAAATTATA
14529031 AAAATTATA
1 AAAATTATA
14529040 AAAA
1 AAAA
14529044 AAACTTGAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
9 36 0.39
10 36 0.39
11 20 0.22
12 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.38
Consensus pattern (9 bp):
AAAATTATA
Found at i:14530162 original size:86 final size:86
Alignment explanation
Indices: 14530015--14530191 Score: 300
Period size: 86 Copynumber: 2.1 Consensus size: 86
14530005 TTTAGGTTTA
* * *
14530015 TTTTTTCCATATTGTACTCTCGTTTGTTTACTCATTTAGTGAAAAGTCGATGCCTCTTTTATCCA
1 TTTTTTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
* *
14530080 TGGTTTTTCTCTGTTTGAGGG
66 TGGTTTTTCCCTCTTTGAGGG
*
14530101 TTTTTTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAATTCAATGCCTCATTTATCCA
1 TTTTTTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
14530166 TGGTTTTTCCCTCTTTGAGGG
66 TGGTTTTTCCCTCTTTGAGGG
14530187 TTTTT
1 TTTTT
14530192 CACGTAAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (86 bp):
TTTTTTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
TGGTTTTTCCCTCTTTGAGGG
Found at i:14531632 original size:19 final size:19
Alignment explanation
Indices: 14531609--14531655 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
14531599 ATTTTTAAAT
14531609 ATTTTTATAATATTT-ATA
1 ATTTTTATAATATTTCATA
*
14531627 AGTTTTTAT-ATTTTTCATA
1 A-TTTTTATAATATTTCATA
14531646 ATTTTTATAA
1 ATTTTTATAA
14531656 GTTTATATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTATAATATTTCATA
Found at i:14531632 original size:28 final size:28
Alignment explanation
Indices: 14531601--14531659 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
14531591 TTTATTACAT
14531601 TTTTAAATATTTTT-ATAATATTTATAAG
1 TTTT-AATATTTTTCATAATATTTATAAG
* *
14531629 TTTTTATATTTTTCATAATTTTTATAAG
1 TTTTAATATTTTTCATAATATTTATAAG
14531657 TTT
1 TTT
14531660 ATATCAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (28 bp):
TTTTAATATTTTTCATAATATTTATAAG
Found at i:14531679 original size:28 final size:26
Alignment explanation
Indices: 14531607--14531679 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
14531597 ACATTTTTAA
14531607 ATAT-TTTTATAATA-TTTATAAGTTT
1 ATATATTTT-TAATATTTTATAAGTTT
* *
14531632 TTATATTTTTCATAATTTTTATAAGTTT
1 ATATATTTTTAAT-A-TTTTATAAGTTT
14531660 ATATCAATTTTTAATATTTT
1 ATAT--ATTTTTAATATTTT
14531680 TTAATAGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
25 6 0.16
26 5 0.13
28 18 0.47
29 1 0.03
30 8 0.21
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (26 bp):
ATATATTTTTAATATTTTATAAGTTT
Found at i:14531707 original size:10 final size:10
Alignment explanation
Indices: 14531571--14531737 Score: 79
Period size: 10 Copynumber: 17.5 Consensus size: 10
14531561 AATATATTAA
14531571 TTTTATAATTT
1 TTTTATAA-TT
14531582 TTTGTATAATT
1 TTT-TATAATT
* *
14531593 TATTA-CA-T
1 TTTTATAATT
14531601 TTTTA-AATAT
1 TTTTATAAT-T
14531611 TTTTATAA-T
1 TTTTATAATT
* *
14531620 ATTTATAAGT
1 TTTTATAATT
14531630 TTTTAT-ATT
1 TTTTATAATT
*
14531639 TTTCATAA-T
1 TTTTATAATT
*
14531648 TTTTATAAGT
1 TTTTATAATT
*
14531658 TTATATCAATT
1 TTTTAT-AATT
*
14531669 TTTAAT-A-T
1 TTTTATAATT
*
14531677 TTTT-TAATA
1 TTTTATAATT
* *
14531686 GTTAATAA--
1 TTTTATAATT
14531694 TTTTATAATT
1 TTTTATAATT
*
14531704 TTTT-TTATT
1 TTTTATAATT
14531713 TTTTATAATT
1 TTTTATAATT
* * *
14531723 GTTTCTGATT
1 TTTTATAATT
14531733 TTTTA
1 TTTTA
14531738 ATCATTTTTA
Statistics
Matches: 116, Mismatches: 26, Indels: 29
0.68 0.15 0.17
Matches are distributed among these distances:
7 1 0.01
8 17 0.15
9 35 0.30
10 42 0.36
11 16 0.14
12 5 0.04
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (10 bp):
TTTTATAATT
Found at i:14534100 original size:31 final size:31
Alignment explanation
Indices: 14534062--14534130 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
14534052 ATTTATTTAA
* *
14534062 ATTTATACACTTGAATCAAAATTAAAATTTC
1 ATTTATACACTTGAACCAAAATCAAAATTTC
* **
14534093 ATTTATACATTTGAACCGCAATCAAAATTTC
1 ATTTATACACTTGAACCAAAATCAAAATTTC
*
14534124 ATGTATA
1 ATTTATA
14534131 TAATTGCACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.38
Consensus pattern (31 bp):
ATTTATACACTTGAACCAAAATCAAAATTTC
Found at i:14541776 original size:19 final size:19
Alignment explanation
Indices: 14541752--14541790 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14541742 TTGATTTCTT
*
14541752 ATACTTAAATATAATAATA
1 ATACTTAAACATAATAATA
* *
14541771 ATACTTCACCATAATAATA
1 ATACTTAAACATAATAATA
14541790 A
1 A
14541791 ATCTTAGGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (19 bp):
ATACTTAAACATAATAATA
Found at i:14544534 original size:10 final size:9
Alignment explanation
Indices: 14544506--14544536 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14544496 GTTTTCCTGG
14544506 TTAGGATTT
1 TTAGGATTT
14544515 TTAGGATTT
1 TTAGGATTT
*
14544524 TTAGGGTTT
1 TTAGGATTT
14544533 TTAG
1 TTAG
14544537 AGAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (9 bp):
TTAGGATTT
Found at i:14544908 original size:126 final size:125
Alignment explanation
Indices: 14544654--14545217 Score: 803
Period size: 126 Copynumber: 4.5 Consensus size: 125
14544644 AAATCAAAGT
* * * * * *
14544654 AGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCAT-GTGTACGCGCTTTTGCTACAGTAGG
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCC-TCGTGGACGCGCTTTTGCTACAGTAGG
*
14544718 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTTAAAAAACGCTTCAAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
* * *
14544779 AGGATGCTTTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTTGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * *
14544844 CTTGGAAGAAATAATTTCGAGTTGACGTTTGTAAGAAAATAGTTAAAAAAACGCTTCAAGC
66 CCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
* *
14544905 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGTTTTTGCTACAGTAGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * * * * *
14544970 CTTGAAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 CCTG-GAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGT-TAAAAAAACGCTTCAAGC
14545032 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
1 AGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * * * *
14545096 TCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAG-TATAAAATCGCTTCTAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
*
14545156 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCTCAT-GTGGACGCGCTTTTGCTACAGTA
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGC-CCTCGTGGACGCGCTTTTGCTACAGTA
14545218 ACATGTTTGG
Statistics
Matches: 396, Mismatches: 36, Indels: 15
0.89 0.08 0.03
Matches are distributed among these distances:
123 2 0.01
124 69 0.17
125 62 0.16
126 180 0.45
127 81 0.20
128 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (125 bp):
AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
Found at i:14545187 original size:251 final size:251
Alignment explanation
Indices: 14544654--14545217 Score: 846
Period size: 251 Copynumber: 2.2 Consensus size: 251
14544644 AAATCAAAGT
* * * * * *
14544654 AGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCATGTGTACGCGCTTTTGCTACAGTAGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGTAGGT
* * *
14544719 CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTTAAAAAACGCTTCAAGCAGGAT
66 CCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTGCAAGCAGGAT
* * *
14544784 GCTTTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTTGGTCTTGG
131 GCTTTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGG
* *
14544849 AAGAAATAATTTCGAGTTGACGTTTGTAAGAAAATAGTTAAAAAAACGCTTCAAGC
196 AAGAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTAAAAAAACGCTTCAAGC
* *
14544905 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGTTTTTGCTACAGTAGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGTAGGT
* * *
14544970 CTTGAAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAACAACGCTGCAAGCAGG
66 CCTG-AAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAA-AACGCTGCAAGCAGG
*
14545035 ATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCC
129 ATGCT-TTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCC
* * * * *
14545099 TGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAG-TATAAAATCGCTTCTAGC
193 TGGAAGAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTAAAAAAACGCTTCAAGC
*
14545156 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCTCATGTGGACGCGCTTTTGCTACAGTA
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGTA
14545218 ACATGTTTGG
Statistics
Matches: 282, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
251 134 0.48
252 70 0.25
253 76 0.27
254 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (251 bp):
AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCATGTGGACGCGCTTTTGCTACAGTAGGT
CCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTGCAAGCAGGAT
GCTTTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGG
AAGAAATAATTTCGACTTGACGTTTCTAAGAAAATAGTTAAAAAAACGCTTCAAGC
Found at i:14545844 original size:11 final size:11
Alignment explanation
Indices: 14545830--14545906 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
14545820 TTAGATATGG
14545830 ATTTGAGAGAA
1 ATTTGAGAGAA
*
14545841 ATTT-AGAAGGA
1 ATTTGAG-AGAA
14545852 ATTTGAGAGCAA
1 ATTTGAGAG-AA
14545864 A-TTGAGAGGAA
1 ATTTGAGA-GAA
14545875 ATTT-AGAGGAA
1 ATTTGAGA-GAA
14545886 A-TTGAGAGGAA
1 ATTTGAGA-GAA
14545897 ATTTGAGAGA
1 ATTTGAGAGA
14545907 GGAGTTGTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
10 4 0.07
11 40 0.70
12 13 0.23
ACGTcount: A:0.44, C:0.01, G:0.30, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:14545856 original size:22 final size:22
Alignment explanation
Indices: 14545830--14545906 Score: 104
Period size: 22 Copynumber: 3.5 Consensus size: 22
14545820 TTAGATATGG
*
14545830 ATTTGAGAGAAATTTAGAAGG-A
1 ATTTGAGAGAAATTGAG-AGGAA
14545852 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAG-AAATTGAGAGGAA
14545875 ATTT-AGAGGAAATTGAGAGGAA
1 ATTTGAGA-GAAATTGAGAGGAA
14545897 ATTTGAGAGA
1 ATTTGAGAGA
14545907 GGAGTTGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 8
0.85 0.02 0.14
Matches are distributed among these distances:
22 34 0.68
23 16 0.32
ACGTcount: A:0.44, C:0.01, G:0.30, T:0.25
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAGGAA
Found at i:14545885 original size:33 final size:35
Alignment explanation
Indices: 14545830--14545905 Score: 113
Period size: 33 Copynumber: 2.3 Consensus size: 35
14545820 TTAGATATGG
*
14545830 ATTTGAGA-GAAATTTAGAAGGAATTTGAGAGCAA
1 ATTTGAGAGGAAATTTAGAAGGAAATTGAGAGCAA
*
14545864 A-TTGAGAGGAAATTTAG-AGGAAATTGAGAGGAA
1 ATTTGAGAGGAAATTTAGAAGGAAATTGAGAGCAA
14545897 ATTTGAGAG
1 ATTTGAGAG
14545906 AGGAGTTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 21 0.55
34 17 0.45
ACGTcount: A:0.43, C:0.01, G:0.30, T:0.25
Consensus pattern (35 bp):
ATTTGAGAGGAAATTTAGAAGGAAATTGAGAGCAA
Found at i:14546133 original size:18 final size:19
Alignment explanation
Indices: 14546094--14546137 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
14546084 ACACAAACCG
* *
14546094 TGCTTACGTGGACGTGGTT
1 TGCTGACGTGGACGTAGTT
14546113 TGCTGACGTGGACG-AGTT
1 TGCTGACGTGGACGTAGTT
14546131 TGCTGAC
1 TGCTGAC
14546138 TCGTCCCCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.14, C:0.18, G:0.36, T:0.32
Consensus pattern (19 bp):
TGCTGACGTGGACGTAGTT
Found at i:14546439 original size:11 final size:11
Alignment explanation
Indices: 14546423--14546449 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14546413 GTTTCCCGGC
14546423 TTCAAAGAGAT
1 TTCAAAGAGAT
14546434 TTCAAAGAGAT
1 TTCAAAGAGAT
14546445 TTCAA
1 TTCAA
14546450 CGAGTTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (11 bp):
TTCAAAGAGAT
Found at i:14549465 original size:15 final size:15
Alignment explanation
Indices: 14549447--14549476 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14549437 ATCCCGAGAT
14549447 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14549462 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14549477 GTTCGTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATTTTTTAAAAATG
Found at i:14551757 original size:21 final size:21
Alignment explanation
Indices: 14551733--14551772 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14551723 GATTTGCTGC
* *
14551733 CTTCAGCTTTAATCTGCTCCT
1 CTTCAGCTTCAATCCGCTCCT
14551754 CTTCAGCTTCAATCCGCTC
1 CTTCAGCTTCAATCCGCTC
14551773 TACTGCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (21 bp):
CTTCAGCTTCAATCCGCTCCT
Found at i:14551912 original size:46 final size:46
Alignment explanation
Indices: 14551862--14551968 Score: 151
Period size: 46 Copynumber: 2.3 Consensus size: 46
14551852 ATGCATTCTT
* *
14551862 CTTTAATCTATTGCAACACCAAGGAAACAAGATTCGCTGCCTTCAG
1 CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
* ** *
14551908 CTTTAATCTGTTCCAATGCCAGGGAAACAAGATTCGCCGCCTTCAG
1 CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
*
14551954 CTTTAATCTGTTCCA
1 CTTTAATCTATTCCA
14551969 CTAAAACTTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (46 bp):
CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
Found at i:14552288 original size:24 final size:24
Alignment explanation
Indices: 14552261--14552341 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
14552251 CGGATTGTCC
*
14552261 CCACTGTAATCTTTAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
* *
14552285 CCACTGTAATCTTCAAGGCTCGAT
1 CCACTGTAATCTTCAAGGTTCAAT
14552309 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
14552333 CTACTGTAA
1 CCACTGTAA
14552342 GTTTGGGACA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:14553227 original size:15 final size:14
Alignment explanation
Indices: 14553204--14553239 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 14
14553194 TCCATTTTCT
14553204 TTTTCTTTATTTTTTA
1 TTTT-TTTA-TTTTTA
14553220 TTTTTTTATTTTTA
1 TTTTTTTATTTTTA
14553234 TTTTTT
1 TTTTTT
14553240 GGACTCAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.60
15 4 0.20
16 4 0.20
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:14563398 original size:14 final size:14
Alignment explanation
Indices: 14563379--14563415 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
14563369 ATACCCGGTT
14563379 CACATAGTAGCCTG
1 CACATAGTAGCCTG
14563393 CACATAGTAGCCTG
1 CACATAGTAGCCTG
14563407 CACATAGTA
1 CACATAGTA
14563416 CTACACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (14 bp):
CACATAGTAGCCTG
Found at i:14565590 original size:16 final size:16
Alignment explanation
Indices: 14565569--14565602 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14565559 TTTTAGGATG
* *
14565569 AAATGCTATGCAGTCA
1 AAATGCCATGCAATCA
14565585 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
14565601 AA
1 AA
14565603 GCAAAACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:14566686 original size:15 final size:15
Alignment explanation
Indices: 14566668--14566697 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14566658 ATCCCGAGAT
14566668 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14566683 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14566698 GTTCATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATTTTTTAAAAATG
Found at i:14581988 original size:48 final size:48
Alignment explanation
Indices: 14581930--14582041 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
14581920 ATAAATTTTG
* *
14581930 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGTAACAAAT
1 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
* *
14581978 TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAAC
1 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
14582026 TTTGTAATATAAATTA
1 TTTGTAATATAAATTA
14582042 GGTATATTGG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (48 bp):
TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
Found at i:14585847 original size:23 final size:23
Alignment explanation
Indices: 14585821--14585865 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14585811 CCACACAGAT
14585821 ATGTAGCCGAAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGAA
*
14585844 ATGTAGCTGAAGCTACCACTGA
1 ATGTAGCCGAAGCTACCACTGA
14585866 TCAATAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (23 bp):
ATGTAGCCGAAGCTACCACTGAA
Found at i:14589380 original size:87 final size:87
Alignment explanation
Indices: 14589234--14589399 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 87
14589224 AACTTTAGGA
*
14589234 AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGGGGAAGCATGATTCGCTG
1 AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCTG
14589299 TTGTGGCTTTAATCCACCTGGG
66 TTGTGGCTTTAATCCACCTGGG
** **
14589321 AAGTAAGATTCGCTGTTGT-AGCTTTAATCTTTTTAACTGTAATGTCGAGGAAGCATGATTCGCT
1 AAGTAAGATTCGCCATTGTGA-CTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCT
14589385 GTTGTGGCTTTAATC
65 GTTGTGGCTTTAATC
14589400 TATTCCACTG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 72 0.99
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (87 bp):
AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCTG
TTGTGGCTTTAATCCACCTGGG
Found at i:14589710 original size:50 final size:50
Alignment explanation
Indices: 14589318--14589711 Score: 328
Period size: 50 Copynumber: 7.9 Consensus size: 50
14589308 TAATCCACCT
* * *
14589318 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
* * * * * *
14589368 AGGAAGCATGATTCGCTGTTGTGGCTTTAATCTATTCCACTGC-ATCG-CTT
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAAT-GTC-G
* * *
14589418 GGGAGGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACCGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
* * * * * * *
14589468 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGC-ATCGCTTG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAAT-G-TCG
* * *
14589519 GGG-AGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
* * * ** * * **** *
14589568 GGGAAGCAAGATTCACCGATGGGGCTTTAATCTGTTCCACTGCACCACCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
* ** *
14589618 GAGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
* * * * * *
14589668 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCA
14589712 CCGCCAGGGA
Statistics
Matches: 257, Mismatches: 79, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
49 10 0.04
50 237 0.92
51 10 0.04
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (50 bp):
GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCG
Found at i:14589712 original size:100 final size:100
Alignment explanation
Indices: 14589318--14589732 Score: 605
Period size: 100 Copynumber: 4.2 Consensus size: 100
14589308 TAATCCACCT
* * * * *
14589318 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGAGGAAGCATGATTCG
1 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* * * * **
14589383 CTGTTGTGGCTTTAATCTATTCCACTGCATCGCTT
66 CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
*** *
14589418 GGGAGGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACCGCAATGTCGGGGAAGCAAGATTCA
1 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* **
14589483 CCGATGTGGCTTTAATCTGTTCCACTGCATCGCTT
66 CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
* * *
14589518 GGGGAGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
1 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* *
14589583 CCGATGGGGCTTTAATCTGTTCCACTGCACCACCA
66 CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
*
14589618 GAGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
1 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
14589683 CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
66 CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
*
14589718 GGGAAATAGGATTCG
1 GGGAAATAAGATTCG
14589733 TTGTCTTCAC
Statistics
Matches: 287, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 287 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (100 bp):
GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
CCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
Found at i:14591065 original size:46 final size:46
Alignment explanation
Indices: 14591014--14591106 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
14591004 TCATTTTTCA
* * *
14591014 TTTTTTGGATTCAAAGTGCCCTTTAAGGGTTTTCACTTTGATCCTT
1 TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTT
**
14591060 TTTTTTGGACTCAAAGCGCCCTTTGTGGGTTTTCACCTTGATCCTT
1 TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTT
14591106 T
1 T
14591107 CTCTTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.46
Consensus pattern (46 bp):
TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTT
Found at i:14599948 original size:12 final size:13
Alignment explanation
Indices: 14599924--14599971 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
14599914 TGAGGAAGGA
*
14599924 AATATTTAATAAT
1 AATATATAATAAT
14599937 AATATA-AATAAT
1 AATATATAATAAT
14599949 AACATATATACATAAT
1 -A-ATATATA-ATAAT
14599965 AATATAT
1 AATATAT
14599972 TAAAGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 6 0.20
13 6 0.20
14 11 0.37
15 2 0.07
16 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATATAATAAT
Found at i:14599963 original size:16 final size:16
Alignment explanation
Indices: 14599938--14599975 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14599928 TTTAATAATA
14599938 ATATAAATAATAACAT
1 ATATAAATAATAACAT
* *
14599954 ATATACATAATAATAT
1 ATATAAATAATAACAT
14599970 AT-TAAA
1 ATATAAA
14599976 GTTGAAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAATAATAACAT
Found at i:14600217 original size:16 final size:16
Alignment explanation
Indices: 14600172--14600218 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
14600162 TTAAAATAAT
14600172 ATTATATAATAAAATA
1 ATTATATAATAAAATA
*
14600188 ATGCATATACATAAAA-A
1 AT-TATATA-ATAAAATA
14600205 ATTATATAGATAAA
1 ATTATATA-ATAAA
14600219 TATATGAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (16 bp):
ATTATATAATAAAATA
Found at i:14600252 original size:3 final size:3
Alignment explanation
Indices: 14600235--14600281 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
14600225 AACTAATATA
* * * *
14600235 AAT AAT AAC ACT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14600282 ATTAATATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:14606861 original size:16 final size:16
Alignment explanation
Indices: 14606837--14606880 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
14606827 TTGTGCTGTC
*
14606837 ATTTTTTAATTTTTA-
1 ATTTTTTAATTTATAT
*
14606852 ATTATTTTAATATATAT
1 ATT-TTTTAATTTATAT
14606869 ATTTTTTAATTT
1 ATTTTTTAATTT
14606881 CAATTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTTTAATTTATAT
Found at i:14607139 original size:3 final size:3
Alignment explanation
Indices: 14607133--14607184 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
14607123 AAAAAGGCTA
14607133 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14607181 TAT T
1 TAT T
14607185 CTTGGCCTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14609366 original size:23 final size:23
Alignment explanation
Indices: 14609339--14609408 Score: 113
Period size: 23 Copynumber: 3.0 Consensus size: 23
14609329 AAAGAAAGAC
14609339 GAACAATGAAGATTCTCTGCAAT
1 GAACAATGAAGATTCTCTGCAAT
* *
14609362 GAACAGTGAAGATTCTCTACAAT
1 GAACAATGAAGATTCTCTGCAAT
*
14609385 GAACAATGAAAATTCTCTGCAAT
1 GAACAATGAAGATTCTCTGCAAT
14609408 G
1 G
14609409 CACTTTAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (23 bp):
GAACAATGAAGATTCTCTGCAAT
Found at i:14609444 original size:5 final size:5
Alignment explanation
Indices: 14609434--14609458 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14609424 AAAAATAGAT
14609434 TTTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA
14609459 AATATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTAA
Found at i:14609508 original size:28 final size:26
Alignment explanation
Indices: 14609452--14609506 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14609442 AATTTAATTT
* * *
14609452 AATTTAAAATATAATAATTTATGAAA
1 AATTTAAAATATAAAAATTAATAAAA
14609478 AATTTAAAATATATAAAATTAATAAAA
1 AATTTAAAATATA-AAAATTAATAAAA
14609505 AA
1 AA
14609507 ATATATGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
AATTTAAAATATAAAAATTAATAAAA
Found at i:14620452 original size:112 final size:112
Alignment explanation
Indices: 14620322--14620523 Score: 323
Period size: 112 Copynumber: 1.8 Consensus size: 112
14620312 ATAAAATATT
* * * * *
14620322 TTAGGAATGTGTTGGGCTGTGTAACCAGGGTGGGGTGCTTGACTGTCATCTCTCTTTGCGTCAAA
1 TTAGGAATATGTCGGGCTGAGTAACCAGGGTGGGGTGCTTGACTATCATCTCTCTTCGCGTCAAA
14620387 AGGTTCAATATATTCTTAAGAAAAAAAACATATATAAATATAATAAA
66 AGGTTCAATATATTCTTAAGAAAAAAAACATATATAAATATAATAAA
* * *
14620434 TTAGGAATATGTCGGGCTGAGTAACCCGGGTGGGGTGTTTGGCTATCATCTCTCTTCGCGTCAAA
1 TTAGGAATATGTCGGGCTGAGTAACCAGGGTGGGGTGCTTGACTATCATCTCTCTTCGCGTCAAA
*
14620499 AGGTTCAATATATTCTTAAGCAAAA
66 AGGTTCAATATATTCTTAAGAAAAA
14620524 GAAGAAGAAG
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
112 81 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (112 bp):
TTAGGAATATGTCGGGCTGAGTAACCAGGGTGGGGTGCTTGACTATCATCTCTCTTCGCGTCAAA
AGGTTCAATATATTCTTAAGAAAAAAAACATATATAAATATAATAAA
Found at i:14628610 original size:28 final size:28
Alignment explanation
Indices: 14628575--14628657 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
14628565 AATATCGGTA
*
14628575 AGTGTGGGCCTTAGCCCATTACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* *
14628603 AGTGTGGGCCTTAGCCCAGTACAGTGAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* * *
14628631 AATATGGGCCTTAGCCCAATGCAGTAA
1 AGTGTGGGCCTTAGCCCAATACAGTAA
14628658 ACAGAATAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:14629028 original size:27 final size:27
Alignment explanation
Indices: 14628998--14629300 Score: 405
Period size: 27 Copynumber: 11.2 Consensus size: 27
14628988 GGTATAACAG
*
14628998 TCATTTTACCCTTCGAGGGCATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
14629025 TCATTTTACCCATCGGGGGTATTTCAA
1 TCATTTTACCCTTCGAGGGTATTTCGA
14629052 TCATTTTACCCTTCGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14629079 TCATTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14629106 TCATTTTACCCTTCGGGGGTATTTTGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
*
14629133 TCATTTTACCCTTCGGGGGTATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
14629159 GTCATTTTACCCTTTGAGGGTATTT-TA
1 -TCATTTTACCCTTCGAGGGTATTTCGA
* *
14629186 GTCATTTTACCCTTCAAGGGTATTTCGG
1 -TCATTTTACCCTTCGAGGGTATTTCGA
14629214 TCATTTTACCCTTCGAGGGTATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
*
14629240 GTTATTTTACCCTTCGAGGGTATTTCGA
1 -TCATTTTACCCTTCGAGGGTATTTCGA
* * *
14629268 TCATTTTATCCTTCGAAGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
14629295 TCATTT
1 TCATTT
14629301 GCCTATGAAT
Statistics
Matches: 244, Mismatches: 27, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
26 1 0.00
27 242 0.99
28 1 0.00
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGA
Found at i:14635248 original size:15 final size:16
Alignment explanation
Indices: 14635213--14635256 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
14635203 ACTAAAAATT
14635213 TATTTTAAAAATAAAA
1 TATTTTAAAAATAAAA
* *
14635229 AATTTTAAAAA-AAAG
1 TATTTTAAAAATAAAA
14635244 TATTTTAAAAATA
1 TATTTTAAAAATA
14635257 TTTTAAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
TATTTTAAAAATAAAA
Found at i:14639211 original size:5 final size:5
Alignment explanation
Indices: 14639201--14639317 Score: 234
Period size: 5 Copynumber: 23.4 Consensus size: 5
14639191 TTTACTTAAG
14639201 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
14639251 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
14639301 TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TA
14639318 AAAGAAAAGA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 112 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Done.