Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 62 of 199
Found at i:17777317 original size:21 final size:21
Alignment explanation
Indices: 17777262--17777317 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
17777252 CTCTCCATTT
*
17777262 TCTTTTTTCATTTTTCATTTTCA
1 TCTTTTTT--TTTTTCATTATCA
**
17777285 TCTTTTCATTTTTCA-TATCA
1 TCTTTTTTTTTTTCATTATCA
17777305 CTCTTTTTTTTTT
1 -TCTTTTTTTTTT
17777318 GGACTCAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 4 0.15
21 17 0.63
23 6 0.22
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (21 bp):
TCTTTTTTTTTTTCATTATCA
Found at i:17783040 original size:14 final size:14
Alignment explanation
Indices: 17783021--17783049 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
17783011 TGCTTGGGCC
17783021 CGGGCATTATTGGG
1 CGGGCATTATTGGG
17783035 CGGGCATTATTGGG
1 CGGGCATTATTGGG
17783049 C
1 C
17783050 TTGTACATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.17, G:0.41, T:0.28
Consensus pattern (14 bp):
CGGGCATTATTGGG
Found at i:17785287 original size:44 final size:44
Alignment explanation
Indices: 17785230--17785519 Score: 436
Period size: 44 Copynumber: 6.6 Consensus size: 44
17785220 ACCAGTATGG
* * * * * *
17785230 GAAGATAAGATCTGATCTCTTTGATCTACTTCATGCTAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * *
17785274 GAAGACAAAATCTGCTTTCTTCGATCTACTCCACGTCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
17785318 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACACCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
17785362 GAAGACAAGATCTACTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
17785406 GAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
17785450 GAAGACCAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
17785494 GAAGACAAGATCTACTTTCTTCGATC
1 GAAGACAAGATCTGCTTTCTTCGATC
17785520 GATTCCACTG
Statistics
Matches: 224, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 224 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:17785913 original size:44 final size:44
Alignment explanation
Indices: 17785601--17785919 Score: 154
Period size: 44 Copynumber: 7.2 Consensus size: 44
17785591 ATCTACCATA
* * * *
17785601 TTCGATCTACTCTACTACTGTTTAGGGAGATAAGATCTGTAATA
1 TTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATC
* * * ** * * *
17785645 TTCAATCCATTCCACTGGTGCCCAGGGAGAT-AGA-AT-TACTGGC
1 TTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAAT--C
* * * * ***
17785688 TTCAATGTACTCCACTGTAAC--CTCAGGGAGGTAAAATCTACCATC
1 TTCGATCTACTCCAC--T-ACTGCTCAGGGAGATAAGATCTGTAATC
17785733 TTCGATCTACTCCACTACTG-TCTAGGGAGATAAGATCTGTAATC
1 TTCGATCTACTCCACTACTGCTC-AGGGAGATAAGATCTGTAATC
* * * * * *
17785777 TTCAATCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGC
1 TTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAAT--C
* * * * * * * **
17785820 TTCAATGTACTCCACTA-TAACCTCAGGAAGGTAAAATCCGCCATC
1 TTCGATCTACTCCACTACT--GCTCAGGGAGATAAGATCTGTAATC
* *
17785865 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
1 TTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATC
17785909 TTCGATCTACT
1 TTCGATCTACT
17785920 TCACGCCAAT
Statistics
Matches: 193, Mismatches: 62, Indels: 40
0.65 0.21 0.14
Matches are distributed among these distances:
41 6 0.03
42 5 0.03
43 36 0.19
44 107 0.55
45 35 0.18
46 2 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
TTCGATCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATC
Found at i:17785917 original size:132 final size:131
Alignment explanation
Indices: 17785511--17785917 Score: 600
Period size: 132 Copynumber: 3.1 Consensus size: 131
17785501 AGATCTACTT
* * * * * * *
17785511 TCTTCGATCGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
17785576 CCTTA-GAGAGGTAAAATCTACCATATTCGATCTACTCTACTACTGTTTAGGGAGATAAGATCTG
66 CCTCAGGA-AGGTAAAATCTACCATCTTCGATCTACTCCACTACTG-TTAGGGAGATAAGATCTG
17785640 TAA
129 TAA
* * *
17785643 TATTCAATCCATTCCACTGGTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
17785708 CCTCAGGGAGGTAAAATCTACCATCTTCGATCTACTCCACTACTGTCTAGGGAGATAAGATCTGT
66 CCTCAGGAAGGTAAAATCTACCATCTTCGATCTACTCCACTACTGT-TAGGGAGATAAGATCTGT
17785773 AA
130 AA
*
17785775 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTATAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** *
17785840 CCTCAGGAAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGAAGGTAAAATCTACCATCTTCGATCTACTCCACTACTG-TTAGGGAGATAAGATCTGT
17785905 AA
130 AA
*
17785907 TCTTCGATCTA
1 TCTTCAATCTA
17785918 CTTCACGCCA
Statistics
Matches: 250, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 247 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGAAGGTAAAATCTACCATCTTCGATCTACTCCACTACTGTTAGGGAGATAAGATCTGTA
A
Found at i:17785944 original size:44 final size:43
Alignment explanation
Indices: 17785896--17786094 Score: 200
Period size: 44 Copynumber: 4.5 Consensus size: 43
17785886 TTAGGGAGAT
17785896 AAGATCTGTAATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGT-ATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * *
17785940 AAGATCTGCTATCTTTGATCTACTTCATGCCAATACATGAAGAA
1 AAGATCTG-TATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
17785984 AAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCT-GTATCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* *
17786029 AAGATCTGCTATCTTTGATCTACTTCACGCCAAAACATGAAGAC
1 AAGATCTG-TATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * *
17786073 AATATATGTTTTCTTCGATCTA
1 AAGATCTG-TATCTTCGATCTA
17786095 TTCCACTGCC
Statistics
Matches: 122, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
44 89 0.73
45 33 0.27
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (43 bp):
AAGATCTGTATCTTCGATCTACTTCACGCCAATACATGAAGAC
Found at i:17786257 original size:573 final size:568
Alignment explanation
Indices: 17785320--17786487 Score: 1644
Period size: 573 Copynumber: 2.0 Consensus size: 568
17785310 CAATACATGA
*** *
17785320 AGACAAGATCTGCTTTCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTTTCTTCG
1 AGACAAGATCTGAAATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTATCTTCG
* * *
17785385 ATCTACTCCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCATGCCAATACAT
66 ATCTACTCCACGCCAATACATGAAGAAAAGATCTACTTTCTTCGATCTACTTCA-GCCAATACAG
* * * * *
17785450 GAAGACCAGATCTGCTTTCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTACTTTCTT
130 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAGACAAGATATACTTTCTT
* * **
17785515 CGATCGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTT
195 CGATCGATTCCACTGCCGACCAGAGAGATAAAATTACTGGCTTCAATATACTCCACTGTAACCAC
* * * * *
17785580 AGAGAGGTAAAATCTACCATATTCGATCTACTCTACTACTGTTTAGGGAGATAAGATCTGTAATA
260 AGAGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATA
*
17785645 TTCAATCCATTCCACTGGTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC
325 TTCAATCCATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC
* * *
17785710 TCAGGGAGGTAAAA-TCTACCATCTTCGATCTACTCCACTACTG-TCTAGGGAGATAAGATCTGT
390 ACAGGGAGGTAAAATTC-ACCATCTTCGATCTACTCCACTACTGCT-TAGGGAGACAAGATCTGA
17785773 AATCTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTA
453 AATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTA
* * *
17785837 TAACCTCAGGAAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGG
517 TAACCACAGGAAGGTAAAATCCACCATATTCGATC--C-CCACTACTGCTTAGGG
* * * * *
17785892 AGATAAGATCTGTAATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTG
1 AGACAAGATCTGAAATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTATCTTCG
* * *
17785957 ATCTACTTCATGCCAATACATGAAGAAAAGATCTACTTTCTTCGATCTACTTC-GCCACCAGTAT
66 ATCTACTCCACGCCAATACATGAAGAAAAGATCTACTTTCTTCGATCTACTTCAGCCA--A-TAC
* * * **
17786021 GGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAAAACATGAAGACAATATATGTTTTC
128 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAGACAAGATATACTTTC
* * * *
17786086 TTCGATCTATTCCACTGCCGACCAGGGAGATAAAATTACTGGCTTTAATGTACTCCACTGTAACC
193 TTCGATCGATTCCACTGCCGACCAGAGAGATAAAATTACTGGCTTCAATATACTCCACTGTAACC
* * * * * * *
17786151 ACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAATATCTGAAA
258 ACAGAGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAA
* *
17786216 TCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTA
323 TATTCAATCCATTCCACTGCTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* * *
17786280 ACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAAGATCTG
387 ACCACAGGGAGGTAAAATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTG
*
17786345 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
452 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
* * *
17786410 TAACCACAGGGAGGTAAAATTCACCATATTTGATCCCCACTACTGCTTAGGG
517 TAACCACAGGAAGGTAAAATCCACCATATTCGATCCCCACTACTGCTTAGGG
*
17786462 AGACAAGATCTGAAATCTTCAATCTA
1 AGACAAGATCTGAAATCTTCGATCTA
17786488 TTCCACTACT
Statistics
Matches: 526, Mismatches: 63, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
570 43 0.08
571 1 0.00
572 108 0.21
573 369 0.70
574 5 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (568 bp):
AGACAAGATCTGAAATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTACTATCTTCG
ATCTACTCCACGCCAATACATGAAGAAAAGATCTACTTTCTTCGATCTACTTCAGCCAATACAGG
AAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAAAACATGAAGACAAGATATACTTTCTTC
GATCGATTCCACTGCCGACCAGAGAGATAAAATTACTGGCTTCAATATACTCCACTGTAACCACA
GAGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATAT
TCAATCCATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCA
CAGGGAGGTAAAATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAAT
CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAAC
CACAGGAAGGTAAAATCCACCATATTCGATCCCCACTACTGCTTAGGG
Found at i:17786265 original size:43 final size:43
Alignment explanation
Indices: 17786217--17786409 Score: 115
Period size: 44 Copynumber: 4.4 Consensus size: 43
17786207 TATCTGAAAT
*
17786217 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
* * * * ***
17786260 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATTCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATT-ACTGG
** * * * ** * * *
17786305 CTTTGATCTGCTCCAGTACTGCTTAGGG-AG-ACAA-GATCTGAAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTA-CTG---G
*
17786349 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
*
17786392 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
17786410 TAACCACAGG
Statistics
Matches: 104, Mismatches: 35, Indels: 22
0.65 0.22 0.14
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 4 0.04
43 35 0.34
44 38 0.37
45 17 0.16
46 7 0.07
47 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATTACTGG
Found at i:17786276 original size:132 final size:132
Alignment explanation
Indices: 17786084--17786860 Score: 1285
Period size: 132 Copynumber: 5.9 Consensus size: 132
17786074 ATATATGTTT
* * * * *
17786084 TCTTCGATCTATTCCACTGCCGACCAGGG-AGATAAAATTACTGGCTTTAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * *
17786148 ACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAATATCTG
65 ACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTG
17786213 AAA
130 AAA
17786216 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
17786281 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAAGATCTGA
66 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
17786346 AA
131 AA
17786348 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
17786413 CCACAGGGAGGTAAAATTCACCATATTTGATC--C-CCACTACTGCTTAGGGAGACAAGATCTGA
66 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
17786475 AA
131 AA
*
17786477 TCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * *
17786542 CCACAGAGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTAA
66 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
17786607 AA
131 AA
* * *
17786609 TCTTCAATCTATTCCACTACTGCCTAGTGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * *
17786674 CCACAGGGAGGTAAAATTTACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
17786739 AA
131 AA
17786741 TCTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
17786805 ACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCTCTACTACTGCTTAGGGAGA
65 ACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
17786861 TAAGGTTTTA
Statistics
Matches: 610, Mismatches: 30, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
129 124 0.20
130 1 0.00
131 3 0.00
132 480 0.79
133 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA
AA
Found at i:17786536 original size:261 final size:261
Alignment explanation
Indices: 17786084--17786860 Score: 1270
Period size: 261 Copynumber: 3.0 Consensus size: 261
17786074 ATATATGTTT
* * * * *
17786084 TCTTCGATCTATTCCACTGCCGACCAGGG-AGATAAAATTACTGGCTTTAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* * * *
17786148 ACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAATATCTG
65 ACCACAGGGAGGTAAAATTCACCATCTTTGATC--C-CCACTACTGCTTAGGGAGACAAGATCTG
17786213 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
127 AAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
*
17786278 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAAGATC
192 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
*
17786343 TGAAA
257 TAAAA
17786348 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
17786413 CCACAGGGAGGTAAAATTCACCATATTTGATCCCCACTACTGCTTAGGGAGACAAGATCTGAAAT
66 CCACAGGGAGGTAAAATTCACCATCTTTGATCCCCACTACTGCTTAGGGAGACAAGATCTGAAAT
*
17786478 CTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
131 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
* * *
17786543 CACAGAGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTAAA
196 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTAAA
17786608 A
261 A
* * *
17786609 TCTTCAATCTATTCCACTACTGCCTAGTGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
17786674 CCACAGGGAGGTAAAATTTACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATCTGA
66 CCACAGGGAGGTAAAATTCACCATCTTTGA--T-CCCCACTACTGCTTAGGGAGACAAGATCTGA
17786739 AATCTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTG
128 AATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTG
* *
17786803 TAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCTCTACTACTGCTTAGGGAGA
192 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
17786861 TAAGGTTTTA
Statistics
Matches: 481, Mismatches: 27, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
261 245 0.51
262 1 0.00
263 3 0.01
264 230 0.48
265 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (261 bp):
TCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAGGGAGGTAAAATTCACCATCTTTGATCCCCACTACTGCTTAGGGAGACAAGATCTGAAAT
CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTAAA
A
Found at i:17786815 original size:393 final size:395
Alignment explanation
Indices: 17786084--17786860 Score: 1283
Period size: 393 Copynumber: 2.0 Consensus size: 395
17786074 ATATATGTTT
* * *
17786084 TCTTCGATCTATTCCACTGCCGACCAGGGAGATAAAATTACTGGCTTTAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTACCGACCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * * * *
17786149 CCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAATATCTGA
66 CCACAGAGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTAA
*
17786214 AATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
131 AATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* * *
17786279 AACCACAGGGAGGTAAAATTCACCATCTTTGATCTGCTCCAGTACTGCTTAGGGAGACAAGATCT
196 AACCACAGGGAGGTAAAATTCACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATCT
17786344 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
261 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
*
17786409 GTAACCACAGGGAGGTAAAATTCACCATATTTGATC-C-CCACTACTGCTTAGGGAGACAAGATC
326 GTAACCACAGGGAGGTAAAATCCACCATATTTGATCGCTCCACTACTGCTTAGGGAGACAAGATC
17786472 TGAAA
391 TGAAA
* * *
17786477 TCTTCAATCTATTCCACTACTGCCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTACCGACCAGGGAGA-TAAAATTACTGGCTTCAATGTACTCCACTGTA
*
17786541 ACCACAGAGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTA
65 ACCACAGAGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTA
* *
17786606 AAATCTTCAATCTATTCCACTACTGCCTAGTGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
130 AAATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
*
17786671 TAACCACAGGGAGGTAAAATTTACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATC
195 TAACCACAGGGAGGTAAAATTCACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATC
17786736 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCA
260 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCA
* *
17786800 CTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATCTGCTCTACTACTGCTTAGGGAGA
324 CTGTAACCACAGGGAGGTAAAATCCACCATATTTGATC-GCTCCACTACTGCTTAGGGAGA
17786861 TAAGGTTTTA
Statistics
Matches: 355, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
392 3 0.01
393 333 0.94
395 1 0.00
396 18 0.05
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (395 bp):
TCTTCAATCTATTCCACTACCGACCAGGGAGATAAAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAGAGAGGTAAAATCCACCATCTTTGATCTGCCCCACTACTACTTAGGGAGACAAGATCTAA
AATCTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATTCACCATCTTTGATCTACCCCACTACTGCTTAGGGAGACAAGATCT
GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACT
GTAACCACAGGGAGGTAAAATCCACCATATTTGATCGCTCCACTACTGCTTAGGGAGACAAGATC
TGAAA
Found at i:17788150 original size:8 final size:7
Alignment explanation
Indices: 17788106--17788147 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
17788096 TTAGCCTCTC
17788106 CATTTTT
1 CATTTTT
17788113 -ACTTTTT
1 CA-TTTTT
17788120 CATTTTT
1 CATTTTT
17788127 CA-TTTT
1 CATTTTT
17788133 CATCTTTT
1 CAT-TTTT
17788141 CATTTTT
1 CATTTTT
17788148 TCACATCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 7 0.23
7 16 0.52
8 8 0.26
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:17790996 original size:19 final size:20
Alignment explanation
Indices: 17790972--17791015 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
17790962 TAGAGGTGTT
* *
17790972 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
17790991 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
17791011 -AATGC
1 TAATGC
17791016 GAAAAGAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:17791496 original size:17 final size:17
Alignment explanation
Indices: 17791461--17791496 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17791451 TTATATGATG
*
17791461 AAATGTCATGCAGTAAA
1 AAATGTCATGCAGCAAA
17791478 AAATGTCATGCAGCCAAA
1 AAATGTCATGCAG-CAAA
17791496 A
1 A
17791497 CAAAACACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (17 bp):
AAATGTCATGCAGCAAA
Found at i:17795420 original size:17 final size:17
Alignment explanation
Indices: 17795379--17795424 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
17795369 TGTCTTATCA
17795379 TTTATAT-AATATTAAT
1 TTTATATAAATATTAAT
17795395 TATTA-ATAAAT-TTAAAT
1 T-TTATATAAATATT-AAT
17795412 TTTATATAAATAT
1 TTTATATAAATAT
17795425 GAAATATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 8 0.32
17 16 0.64
18 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTATATAAATATTAAT
Found at i:17798699 original size:17 final size:19
Alignment explanation
Indices: 17798665--17798700 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
17798655 ATTTAGTTAC
17798665 ATTTTAGTTTTAATTTGTT
1 ATTTTAGTTTTAATTTGTT
17798684 ATTTTA-TTTT-ATTTGTT
1 ATTTTAGTTTTAATTTGTT
17798701 TTAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 4 0.24
19 6 0.35
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.72
Consensus pattern (19 bp):
ATTTTAGTTTTAATTTGTT
Found at i:17799530 original size:21 final size:21
Alignment explanation
Indices: 17799484--17799536 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
17799474 CCGTGTAACC
* * *
17799484 CAGTCACACGAGCGTGTCCCT
1 CAGTTACACGGGCGTGTCCCG
17799505 CAGTTACACGGGCGTGTCCCG
1 CAGTTACACGGGCGTGTCCCG
*
17799526 CAGTTAAACGG
1 CAGTTACACGG
17799537 CCATGTACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (21 bp):
CAGTTACACGGGCGTGTCCCG
Found at i:17806448 original size:25 final size:25
Alignment explanation
Indices: 17806420--17806556 Score: 129
Period size: 25 Copynumber: 5.5 Consensus size: 25
17806410 GAGCCATAAT
*
17806420 CGGTAAGCTTC-TCTGAGCTGAAATA
1 CGGTAAGC-TCATCCGAGCTGAAATA
*
17806445 CGGTAAGCTCTTCCGAGCTGAAATA
1 CGGTAAGCTCATCCGAGCTGAAATA
*** *
17806470 AAATAAGCTCATCCAAGCTGAAATA
1 CGGTAAGCTCATCCGAGCTGAAATA
*
17806495 CGGTAAGCTCATACGAGCTGAGAAT-
1 CGGTAAGCTCATCCGAGCTGA-AATA
*
17806520 CGGTAAGCTC-TCATGAGCTGTAAAT-
1 CGGTAAGCTCATC-CGAGCTG-AAATA
*
17806545 TGGTAAGCTCAT
1 CGGTAAGCTCAT
17806557 ACTAGCTGTG
Statistics
Matches: 93, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
24 3 0.03
25 85 0.91
26 5 0.05
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (25 bp):
CGGTAAGCTCATCCGAGCTGAAATA
Found at i:17811901 original size:13 final size:14
Alignment explanation
Indices: 17811860--17811901 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
17811850 AAAAGAGCAC
*
17811860 ATATATGTATCAAA
1 ATATATGTATTAAA
* *
17811874 ATATATATTTTAAA
1 ATATATGTATTAAA
17811888 ATA-ATGTATTAAA
1 ATATATGTATTAAA
17811901 A
1 A
17811902 ACCTAATAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.40
Consensus pattern (14 bp):
ATATATGTATTAAA
Found at i:17813728 original size:25 final size:27
Alignment explanation
Indices: 17813672--17813728 Score: 84
Period size: 24 Copynumber: 2.2 Consensus size: 27
17813662 TTATTATACA
*
17813672 CAATTATGTATCTAGATTTTTTAGTCT
1 CAATTATGTATCTAGATGTTTTAGTCT
17813699 C-ATTATGTAT-TAGA-GTTTTAGTCT
1 CAATTATGTATCTAGATGTTTTAGTCT
17813723 CAATTA
1 CAATTA
17813729 ATTAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 10 0.36
25 8 0.29
26 9 0.32
27 1 0.04
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (27 bp):
CAATTATGTATCTAGATGTTTTAGTCT
Found at i:17816068 original size:20 final size:21
Alignment explanation
Indices: 17816043--17816091 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
17816033 TCTTTCTTTC
17816043 TTTCTTCTTCTTACTTTTG-T
1 TTTCTTCTTCTTACTTTTGCT
* *
17816063 TTTCTTTTTCTTCCTTTTGCT
1 TTTCTTCTTCTTACTTTTGCT
17816084 TTT-TTCTT
1 TTTCTTCTT
17816092 TGCTTCTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.02, C:0.20, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTCTTCTTCTTACTTTTGCT
Found at i:17816088 original size:23 final size:23
Alignment explanation
Indices: 17816038--17816092 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 23
17816028 ATTTTTCTTT
*
17816038 CTTTCTTTCTTCTTCTTACTTTTG
1 CTTT-TTTCTTTTTCTTACTTTTG
*
17816062 ---TTTTCTTTTTCTTCCTTTTG
1 CTTTTTTCTTTTTCTTACTTTTG
17816082 CTTTTTTCTTT
1 CTTTTTTCTTT
17816093 GCTTCTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
20 17 0.65
21 1 0.04
23 8 0.31
ACGTcount: A:0.02, C:0.22, G:0.04, T:0.73
Consensus pattern (23 bp):
CTTTTTTCTTTTTCTTACTTTTG
Found at i:17816713 original size:63 final size:63
Alignment explanation
Indices: 17816636--17816772 Score: 193
Period size: 63 Copynumber: 2.2 Consensus size: 63
17816626 TGTTAGGCCC
* * * * *
17816636 TGTGACTCACTATTTACCTTTAAAGACCACACGAGCTAGAGACACAAGCGTGTGTCCAAGCTG
1 TGTGACTCACTATTTACCATTAAAGACCAAACAAGCTAGAGACACAAGCATGTGTCCAAGCCG
* * *
17816699 TGTGACTCACTATTTACCATTAAAGACCAAATAAGCTAGAGACACCAGCATGTGTCCAGGCCG
1 TGTGACTCACTATTTACCATTAAAGACCAAACAAGCTAGAGACACAAGCATGTGTCCAAGCCG
*
17816762 TATGACTCACT
1 TGTGACTCACT
17816773 GTTTGTTATT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (63 bp):
TGTGACTCACTATTTACCATTAAAGACCAAACAAGCTAGAGACACAAGCATGTGTCCAAGCCG
Found at i:17816789 original size:63 final size:63
Alignment explanation
Indices: 17816638--17816820 Score: 190
Period size: 63 Copynumber: 2.9 Consensus size: 63
17816628 TTAGGCCCTG
* ** * * * *
17816638 TGACTCACTATTTACCTTTAAAGACCACACGAGCTAGAGACACAAGCGTGTGTCCAAGCTGTG
1 TGACTCACTATTTACCATTAAAGACCACAATAGCTAGAGACACAAGCATGTGTCCAGGCCGTA
*
17816701 TGACTCACTATTTACCATTAAAGACCA-AATAAGCTAGAGACACCAGCATGTGTCCAGGCCGTA
1 TGACTCACTATTTACCATTAAAGACCACAAT-AGCTAGAGACACAAGCATGTGTCCAGGCCGTA
* *** * * * **
17816764 TGACTCACTGTTTGTTATTAGAGACCACACTAGCCAGAGACACGGGCATGTG-CCAGG
1 TGACTCACTATTTACCATTAAAGACCACAATAGCTAGAGACACAAGCATGTGTCCAGG
17816821 TCGTGTGAGA
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
62 6 0.06
63 93 0.92
64 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (63 bp):
TGACTCACTATTTACCATTAAAGACCACAATAGCTAGAGACACAAGCATGTGTCCAGGCCGTA
Found at i:17825640 original size:21 final size:20
Alignment explanation
Indices: 17825615--17825654 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
17825605 TTAAAAATTT
17825615 ATTATATATGTTTTATTTTAG
1 ATTATATAT-TTTTATTTTAG
*
17825636 ATTATTTATTTTTATTTTA
1 ATTATATATTTTTATTTTA
17825655 TTTTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
ATTATATATTTTTATTTTAG
Found at i:17829973 original size:140 final size:140
Alignment explanation
Indices: 17829721--17830148 Score: 671
Period size: 140 Copynumber: 3.1 Consensus size: 140
17829711 AGGCCTACTG
* *
17829721 CGACACTTTTGGAG-CAACACTTTCCTAAATGTTGGGATAGACTTGTCGACATATACTTTGGCCA
1 CGACACTTTTGG-GCCGACACTTTCCTAAATGTTGGGATAGACTTGTCGATATATACTTTGGCCA
* * * *
17829785 ACTCTTTTTATAAAAGTTGGGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTC
65 ACTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
*
17829850 CAATACTATGC
130 CAACACTATGC
* * *
17829861 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAAACTTGTCGATATATATTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAATGTTGGGATAGACTTGTCGATATATACTTTGGCCAA
17829926 CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
*
17829991 AACACTATGT
131 AACACTATGC
* * * * *
17830001 CAACACTTTTGGGCCGACACTTTCCTAAATGTTGGGATAGACTTGCCAATATACACTTTGGTCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAATGTTGGGATAGACTTGTCGATATATACTTTGGCCAA
* *
17830066 TTCTTTATATAAGAGTTGGGATATGCATG-CTAAGGCAAAGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
17830130 AACACTATGC
131 AACACTATGC
17830140 CGACACTTT
1 CGACACTTT
17830149 CCTAAGTGTT
Statistics
Matches: 264, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
139 52 0.20
140 212 0.80
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (140 bp):
CGACACTTTTGGGCCGACACTTTCCTAAATGTTGGGATAGACTTGTCGATATATACTTTGGCCAA
CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
AACACTATGC
Found at i:17830280 original size:126 final size:124
Alignment explanation
Indices: 17830013--17830535 Score: 474
Period size: 126 Copynumber: 4.0 Consensus size: 124
17830003 ACACTTTTGG
* * * *
17830013 GCCGACACTTTCCTAAATGTTGGGATAGACTTGCCAATATACACTTTGGTCAA-TTCTTTATATA
1 GCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACTT-TTTGTATA
* *
17830077 AGAGTTGGGATATGCATG-CTAAGGCAAAGCTTAAATAAGAGTCGGCTTTGTCCAACACTAT
65 AGAGTT-GGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT-AGCTTTGTCCAACACTAT
** * *
17830138 GCCGACACTTTCCTAAGTGTTGGGATAGACTTGTTGATATACACTTTGGCCAACCTTTTGTATAC
1 GCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACTTTTTGTATAA
** * *
17830203 GAGTTAGGATATGCATGCCTAAGATAACGCTTAATTAAGAGTAAGCTTTGTTCAACACTAT
66 GAGTT-GGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT-AGCTTTGTCCAACACTAT
* ** **
17830264 GCCGACACTTTGCTAAGTGTTGGGATAGACTTGCCGGCATACGTTTTGGCCAACTTTTTGTATAA
1 GCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACTTTTTGTATAA
* * * *
17830329 GAATTGGTATATACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTAT
66 GAGTTGG-ATATGCATGCCTAAGGCAACGCTTAAATAAGAGTAG-CTTTGTCCAACACTAT
* * ** * ** *
17830390 GTCGATACTTTTGGGCCAACGCTTTCCTAAGTGTTGGGATAAACTTGCTAACATATGCTTTGGTC
1 G-C----C------G---ACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCC
* * * * * * *
17830455 AACTCTTTGTATAAGGGTCGGAATATGAATGCCTAAGGCAACGTTTAAATAAGAGTCGGCTTTAT
52 AACTTTTTGTATAAGAGTTGG-ATATGCATGCCTAAGGCAACGCTTAAATAAGAGT-AGCTTTGT
*
17830520 CTAACACTAT
115 CCAACACTAT
17830530 GCCGAC
1 GCCGAC
17830536 TAGTGTCATA
Statistics
Matches: 325, Mismatches: 54, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
125 74 0.23
126 144 0.44
127 1 0.00
129 1 0.00
131 1 0.00
135 1 0.00
137 1 0.00
139 1 0.00
140 100 0.31
141 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (124 bp):
GCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACACTTTGGCCAACTTTTTGTATAA
GAGTTGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTAGCTTTGTCCAACACTAT
Found at i:17830528 original size:140 final size:140
Alignment explanation
Indices: 17830271--17830530 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 140
17830261 TATGCCGACA
* * ** * * *
17830271 CTTTGCTAAGTGTTGGGATAGACTTGCCGGCATACGTTTTGGCCAACTTTTTGTATAAGAATTGG
1 CTTTCCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGAATCGG
* *
17830336 TATATACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGTCGATACTTT
66 AATATACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTATCCAACACTATGTCGATACTTT
17830401 TGGGCCAACG
131 TGGGCCAACG
* * * **
17830411 CTTTCCTAAGTGTTGGGATAAACTTGCTAACATATGCTTTGGTCAACTCTTTGTATAAGGGTCGG
1 CTTTCCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGAATCGG
** * *
17830476 AATATGA-ATGCCTAAGGCAACGTTTAAATAAGAGTCGGCTTTATCTAACACTATG
66 AATAT-ACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTATCCAACACTATG
17830531 CCGACTAGTG
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
140 100 0.99
141 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (140 bp):
CTTTCCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGAATCGG
AATATACATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTATCCAACACTATGTCGATACTTT
TGGGCCAACG
Found at i:17831973 original size:29 final size:30
Alignment explanation
Indices: 17831902--17831974 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 30
17831892 GCTTAGCTTC
17831902 TCAATTTTAAAAGTGAGAATAACTTTTTTGT
1 TCAATTTT-AAAGTGAGAATAACTTTTTTGT
* *
17831933 T--ATTCATAAAAGTGGGAATAAC-TTTTTGT
1 TCAATT--TTAAAGTGAGAATAACTTTTTTGT
17831962 TCAATTTTAAAGT
1 TCAATTTTAAAGT
17831975 TATTGATTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
29 17 0.49
30 13 0.37
31 5 0.14
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.44
Consensus pattern (30 bp):
TCAATTTTAAAGTGAGAATAACTTTTTTGT
Found at i:17834175 original size:36 final size:37
Alignment explanation
Indices: 17834119--17834489 Score: 316
Period size: 36 Copynumber: 10.1 Consensus size: 37
17834109 TTTATAAAAA
* *
17834119 GTTGCTTTAGACAA-GATTTATCCCAACCTTTTTAAAG
1 GTTGCCTTAGACAATG-TCTATCCCAACCTTTTTAAAG
* * * * * * *
17834156 TTTGCTTTAAACGA-GTTTATCCCAATCATTTTTAAAA
1 GTTGCCTTAGACAATGTCTATCCCAA-CCTTTTTAAAG
* *
17834193 GTTGCCTTAGACAATGTCTATCCCAATCTTTTTTAAG
1 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
* *
17834230 GTTGCCTTAGAC-AGGTCTATCCCAACCTGTTT-AAG
1 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
* * **
17834265 GTTGCCTTA-A-ATAGGTCTATCACAACCTTTATTTTTTAG
1 GTTGCCTTAGACA-ATGTCTATCCCAACC--T-TTTTAAAG
** *
17834304 GTTGTTTTAGACAATGTCTATCCCAA-CTTTTTTAAG
1 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
* * *
17834340 GCTGCCTTAGACGACT-T-TATCCCAACCATTTTTAAAA
1 GTTGCCTTAGAC-AATGTCTATCCCAACC-TTTTTAAAG
* *
17834377 GTTGCCTTAGACAATGACTATACCAACCTTTTT-AAG
1 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
* *
17834413 GTTGCCTTAAACAAAGTCTATCCCAACCTTTTT-AAG
1 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
**
17834449 GTTGCCTTAGATGA-GTCTATCCCAACCTTTTTTAAAG
1 GTTGCCTTAGACAATGTCTATCCCAACC-TTTTTAAAG
17834486 GTTG
1 GTTG
17834490 GTCTTGACTA
Statistics
Matches: 274, Mismatches: 43, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
34 1 0.00
35 47 0.17
36 97 0.35
37 84 0.31
38 22 0.08
39 10 0.04
40 12 0.04
41 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (37 bp):
GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAAG
Found at i:17834409 original size:73 final size:72
Alignment explanation
Indices: 17834137--17834459 Score: 204
Period size: 74 Copynumber: 4.4 Consensus size: 72
17834127 AGACAAGATT
* * * ** * * * *
17834137 TATCCCAACCTTTTTAAAGTTTGCTTTAAACGA-GTTTATCCCAATCATTTTTAAAAGTTGCCTT
1 TATCCCAACCTTTTTAAAG-TTGCCTTAGACAATGACTATACCAA-CCTTTTT-AAGGCTGCCTT
* **
17834201 AGACAATGTC
63 AAACAAACTC
* * * * * * *
17834211 TATCCCAATCTTTTTTAAGGTTGCCTTAGAC-AGGTCTATCCCAACCTGTTTAAGGTTGCCTTAA
1 TATCCCAA-CCTTTTTAAAGTTGCCTTAGACAATGACTATACCAACCTTTTTAAGGCTGCCTTAA
* **
17834275 A-TAGGTC
65 ACAAACTC
* * * ** * * *
17834282 TATCACAACCTTTATTTTTTAGGTTGTTTTAGACAATGTCTATCCCAACTTTTTTAAGGCTGCCT
1 TATCCCAACC----TTTTTAAAGTTGCCTTAGACAATGACTATACCAACCTTTTTAAGGCTGCCT
* * *
17834347 TAGAC-GACTT
62 TAAACAAACTC
*
17834357 TATCCCAACCATTTTTAAAAGTTGCCTTAGACAATGACTATACCAACCTTTTTAAGGTTGCCTTA
1 TATCCCAACC-TTTTT-AAAGTTGCCTTAGACAATGACTATACCAACCTTTTTAAGGCTGCCTTA
*
17834422 AACAAAGTC
64 AACAAACTC
*
17834431 TATCCCAACCTTTTTAAGGTTGCCTTAGA
1 TATCCCAACCTTTTTAAAGTTGCCTTAGA
17834460 TGAGTCTATC
Statistics
Matches: 200, Mismatches: 39, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
70 1 0.00
71 11 0.05
72 31 0.16
73 53 0.26
74 56 0.28
75 48 0.24
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.38
Consensus pattern (72 bp):
TATCCCAACCTTTTTAAAGTTGCCTTAGACAATGACTATACCAACCTTTTTAAGGCTGCCTTAAA
CAAACTC
Found at i:17834434 original size:184 final size:185
Alignment explanation
Indices: 17834119--17834478 Score: 512
Period size: 184 Copynumber: 2.0 Consensus size: 185
17834109 TTTATAAAAA
* ** * * *
17834119 GTTGCTTTAGACAAGATTTATCCCAACCTTTTTAAAGTTTGCTTTAAACGAGTTTATCCCAATCA
1 GTTGCTTTAGACAAGATCTATCCCAACCTTTTTAAAGGCTGCCTTAAACGACTTTATCCCAACCA
* * * * *
17834184 TTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATCTTTTTTAAGGTTGCCTTAGACAGGTCTA
66 TTTTTAAAAGTTGCCTTAGACAATGACTATACCAATCCTTTTTAAGGTTGCCTTAAACAAGTCTA
17834249 TCCCAACCTGTTTAAGGTTGCCTTAAAT-AGGTCTATCACAACCTTTATTTTTTAG
131 TCCCAACCTGTTTAAGGTTGCCTTAAATGA-GTCTATCACAACCTTTATTTTTTAG
* * *
17834304 GTTGTTTTAGACAATG-TCTATCCCAA-CTTTTTTAAGGCTGCCTTAGACGACTTTATCCCAACC
1 GTTGCTTTAGACAA-GATCTATCCCAACCTTTTTAAAGGCTGCCTTAAACGACTTTATCCCAACC
17834367 ATTTTTAAAAGTTGCCTTAGACAATGACTATACCAA-CCTTTTTAAGGTTGCCTTAAACAAAGTC
65 ATTTTTAAAAGTTGCCTTAGACAATGACTATACCAATCCTTTTTAAGGTTGCCTTAAAC-AAGTC
* * *
17834431 TATCCCAACCTTTTTAAGGTTGCCTTAGATGAGTCTATCCCAACCTTT
129 TATCCCAACCTGTTTAAGGTTGCCTTAAATGAGTCTATCACAACCTTT
17834479 TTTAAAGGTT
Statistics
Matches: 155, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
183 20 0.13
184 111 0.72
185 23 0.15
186 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (185 bp):
GTTGCTTTAGACAAGATCTATCCCAACCTTTTTAAAGGCTGCCTTAAACGACTTTATCCCAACCA
TTTTTAAAAGTTGCCTTAGACAATGACTATACCAATCCTTTTTAAGGTTGCCTTAAACAAGTCTA
TCCCAACCTGTTTAAGGTTGCCTTAAATGAGTCTATCACAACCTTTATTTTTTAG
Found at i:17834455 original size:109 final size:108
Alignment explanation
Indices: 17834119--17834489 Score: 349
Period size: 109 Copynumber: 3.4 Consensus size: 108
17834109 TTTATAAAAA
* * * * * * ** *
17834119 GTTGCTTTAGACAAGATTTATCCCAACCTTTTTAAAGTTTGCTTTAAA-CGAGTTTATCCCAATC
1 GTTGCCTTAGACGAG-TCTATCCCAACCTTTTTAAAGGTTGCCTTAAATAG-GACTATCACAA-C
* * *
17834183 ATTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATCTTTTTTAAG
63 CTTTTTTAAGGTTGCCTTAGACAATGTCTATCCCAA-CTTTTTTAAG
* *
17834230 GTTGCCTTAGAC-AGGTCTATCCCAACCTGTTT-AAGGTTGCCTTAAATAGGTCTATCACAACCT
1 GTTGCCTTAGACGA-GTCTATCCCAACCTTTTTAAAGGTTGCCTTAAATAGGACTATCACAACC-
* **
17834293 TTATTTTTTAGGTTGTTTTAGACAATGTCTATCCCAACTTTTTTAAG
64 -T-TTTTTAAGGTTGCCTTAGACAATGTCTATCCCAACTTTTTTAAG
* * * * *
17834340 GCTGCCTTAGACGACTTTATCCCAACCATTTTTAAAAGTTGCCTTAGACA-ATGACTAT-ACCAA
1 GTTGCCTTAGACGAGTCTATCCCAACC-TTTTTAAAGGTTGCCTTA-A-ATAGGACTATCA-CAA
* * *
17834403 CC-TTTTTAAGGTTGCCTTAAACAAAGTCTATCCCAACCTTTTTAAG
62 CCTTTTTTAAGGTTGCCTTAGACAATGTCTATCCCAACTTTTTTAAG
*
17834449 GTTGCCTTAGATGAGTCTATCCCAACCTTTTTTAAAGGTTG
1 GTTGCCTTAGACGAGTCTATCCCAACC-TTTTTAAAGGTTG
17834490 GTCTTGACTA
Statistics
Matches: 216, Mismatches: 33, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
108 1 0.00
109 94 0.44
110 50 0.23
111 46 0.21
112 12 0.06
113 12 0.06
114 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (108 bp):
GTTGCCTTAGACGAGTCTATCCCAACCTTTTTAAAGGTTGCCTTAAATAGGACTATCACAACCTT
TTTTAAGGTTGCCTTAGACAATGTCTATCCCAACTTTTTTAAG
Found at i:17845953 original size:23 final size:23
Alignment explanation
Indices: 17845927--17845975 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
17845917 TTAAATTTTA
17845927 TTTACTTGAAAAAGGGAGCAAAT
1 TTTACTTGAAAAAGGGAGCAAAT
* **
17845950 TTTATTTGAAAAAGGGATTAAAT
1 TTTACTTGAAAAAGGGAGCAAAT
17845973 TTT
1 TTT
17845976 TTGCAACATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (23 bp):
TTTACTTGAAAAAGGGAGCAAAT
Found at i:17847219 original size:51 final size:50
Alignment explanation
Indices: 17847146--17847257 Score: 145
Period size: 51 Copynumber: 2.2 Consensus size: 50
17847136 TAAAAATGGA
* * *
17847146 GAAATATGAAACATTTGGAAATGATTAAGGTTTT-CTCCAAAATGAAAAT
1 GAAAAATGAAACATTTGAAAATGAATAAGGTTTTCCTCCAAAATGAAAAT
* **
17847195 GGATAAATGAAATCATTTGAAAATGAATGTGGTTTTCCTCCAAAATGAAAAT
1 -GAAAAATGAAA-CATTTGAAAATGAATAAGGTTTTCCTCCAAAATGAAAAT
17847247 GAAAAATGAAA
1 GAAAAATGAAA
17847258 AAGACCTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 9 0.17
51 29 0.55
52 15 0.28
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (50 bp):
GAAAAATGAAACATTTGAAAATGAATAAGGTTTTCCTCCAAAATGAAAAT
Found at i:17851418 original size:22 final size:22
Alignment explanation
Indices: 17851393--17851440 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
17851383 AAAATTTAAT
17851393 ATTTA-TACTTTTATTTTTACAA
1 ATTTAGTACTTTTATTTTT-CAA
*
17851415 ATTTAGTATTTTTATTTTTCAA
1 ATTTAGTACTTTTATTTTTCAA
17851437 ATTT
1 ATTT
17851441 CAAAATTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTAGTACTTTTATTTTTCAA
Found at i:17851444 original size:29 final size:28
Alignment explanation
Indices: 17851376--17851444 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
17851366 GTACTATTCG
*
17851376 TAAATTTAAAATTTAATATTTATACTTT
1 TAAATTTCAAATTTAATATTTATACTTT
** * * *
17851404 TATTTTTACAAATTTAGTATTTTTATTTT
1 TAAATTT-CAAATTTAATATTTATACTTT
17851433 TCAAATTTCAAA
1 T-AAATTTCAAA
17851445 ATTCAGTTCA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
28 5 0.16
29 22 0.71
30 4 0.13
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (28 bp):
TAAATTTCAAATTTAATATTTATACTTT
Found at i:17852360 original size:29 final size:29
Alignment explanation
Indices: 17852315--17852370 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
17852305 TTTAGTTCTT
17852315 TTTAATAATACAAAGACTAAATTGATCCA
1 TTTAATAATACAAAGACTAAATTGATCCA
* *
17852344 TTTAATAGTA-AATAGACTAATTTGATC
1 TTTAATAATACAA-AGACTAAATTGATC
17852371 AAGTTCCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.36
Consensus pattern (29 bp):
TTTAATAATACAAAGACTAAATTGATCCA
Found at i:17852455 original size:49 final size:49
Alignment explanation
Indices: 17852398--17852495 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
17852388 ACATTCACCA
17852398 ACTTTCCCCTACCTAAATTTAAAAATCTACCCAAACAAATGAAAGAATC
1 ACTTTCCCCTACCTAAATTTAAAAATCTACCCAAACAAATGAAAGAATC
*
17852447 ACTTTCCCCTACCTAAATTTAAAAATCTATCCAAACAAATGAAAGAATC
1 ACTTTCCCCTACCTAAATTTAAAAATCTACCCAAACAAATGAAAGAATC
17852496 TTCATTTCCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.45, C:0.26, G:0.04, T:0.26
Consensus pattern (49 bp):
ACTTTCCCCTACCTAAATTTAAAAATCTACCCAAACAAATGAAAGAATC
Found at i:17856334 original size:42 final size:42
Alignment explanation
Indices: 17856282--17856361 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
17856272 GTTTACAACC
* *
17856282 AAAAACGCCGCTAAAGG-TCATGTTCTTTAGCAGCGTTTATAA
1 AAAAAAGCCGCT-AAGGAACATGTTCTTTAGCAGCGTTTATAA
*
17856324 AAAAAAGCCGCTAAGGAACATGTTCTTTAGCGGCGTTT
1 AAAAAAGCCGCTAAGGAACATGTTCTTTAGCAGCGTTT
17856362 TTTTCTATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (42 bp):
AAAAAAGCCGCTAAGGAACATGTTCTTTAGCAGCGTTTATAA
Found at i:17856404 original size:86 final size:86
Alignment explanation
Indices: 17856282--17856493 Score: 219
Period size: 86 Copynumber: 2.5 Consensus size: 86
17856272 GTTTACAACC
** * * *
17856282 AAAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCG-TTTATAAAAAAAAGCCGCTAAGGAACATG
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTATAAAAAAAAGCCGCTAAAGAACATG
* * * *
17856346 TTCTTTAGCGGCGTTTTTTTCT
66 TTCTTTAACGGCG-CTTTGTAT
* * * * * ** **
17856368 ATAAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTATTAAGCGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTATAAAAAAAAGCCGCTAAAGAACATG
17856433 TTCTTTAACGGCGCTTTGTAT
66 TTCTTTAACGGCGCTTTGTAT
* *
17856454 AAAAACGCCGCTGAAGAACATGATTTTTAGCGGCGCTTTT
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTT
17856494 TTTACAAACA
Statistics
Matches: 101, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
86 63 0.62
87 38 0.38
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTATAAAAAAAAGCCGCTAAAGAACATG
TTCTTTAACGGCGCTTTGTAT
Found at i:17856421 original size:43 final size:44
Alignment explanation
Indices: 17856330--17856497 Score: 205
Period size: 43 Copynumber: 3.8 Consensus size: 44
17856320 ATAAAAAAAA
* * *
17856330 GCCGCTAAGGAACATGTTCTTTAGCGGCGTTTTTTTCTATAAGC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTATATAAGC
*
17856374 GCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTAT-TAAGC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTATATAAGC
* * * * * *
17856417 GCCGCTAAAGAACATGTTCTTTAACGGCG-CTTTGTATAAAAAC
1 GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTATATAAGC
* *
17856460 GCCGCTGAAGAACATGATTTTTAGCGGCGCTTTTTTTA
1 GCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTTA
17856498 CAAACACTAA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 6 0.06
43 59 0.57
44 34 0.33
45 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (44 bp):
GCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTATATAAGC
Found at i:17856494 original size:87 final size:87
Alignment explanation
Indices: 17856330--17856497 Score: 230
Period size: 86 Copynumber: 1.9 Consensus size: 87
17856320 ATAAAAAAAA
* * * * * * *
17856330 GCCGCTAAGGAACATGTTCTTTAGCGGCGTTTTTTTCTATAAGCGCCGCTAAAGAACATGATCTT
1 GCCGCTAAAGAACATGTTCTTTAACGGCGTCTTTGTATAAAAACGCCGCTAAAGAACATGATCTT
*
17856395 TAGTGGCGTTTTTTTATTAAGC
66 TAGCGGCGTTTTTTTATTAAGC
* *
17856417 GCCGCTAAAGAACATGTTCTTTAACGGCG-CTTTGTATAAAAACGCCGCTGAAGAACATGATTTT
1 GCCGCTAAAGAACATGTTCTTTAACGGCGTCTTTGTATAAAAACGCCGCTAAAGAACATGATCTT
17856481 TAGCGGCGCTTTTTTTA
66 TAGCGGCG-TTTTTTTA
17856498 CAAACACTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
86 35 0.50
87 35 0.50
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (87 bp):
GCCGCTAAAGAACATGTTCTTTAACGGCGTCTTTGTATAAAAACGCCGCTAAAGAACATGATCTT
TAGCGGCGTTTTTTTATTAAGC
Found at i:17856708 original size:43 final size:43
Alignment explanation
Indices: 17856652--17857246 Score: 804
Period size: 43 Copynumber: 13.8 Consensus size: 43
17856642 TTTTTATAAT
*
17856652 AAACGCCGCTATAGACCAGGGTCTTTAGCGGCGCTTAACCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* ** *
17856695 AAACGCCGCTATAGACCATGGTCTTTCGCGGCGCTTATTCATA
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* * ** *
17856738 AAACGCTGCTATAGACCATGGTCTTTCGCGGCGCTTATTCATA
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* * * *
17856781 AAACGCTGCTATATACCATGGTCTTTAGCGGCGCTTATCCATA
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
*
17856824 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTATCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* *
17856867 AAACGCCGCTATAGACCATGGTCTCTAGCGGCGCTTATCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* *
17856910 AAACGCCGCTATAGACCATGGTCTCTAGCGGCGCTTATCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
*
17856953 AAACGCTGCTATAGACCATGGTCTTTAGCGGCGC-TAACCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAA-CCATC
* *
17856996 AAACGCCGCTATAGCCCATGGCCTTTAGCGGCGC-TAACCCATC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAA-CCATC
* * * * *
17857039 AAACGCCGCTATAGCCCATGGCCTTTAGCGGTGCTTACCCATA
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* * *
17857082 AAACGCCGCTATAGATCTTGGTCTTTAACGGCGCTT-ACCATAC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCAT-C
*
17857125 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCAAC
1 AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
* *
17857168 AAACGCCGCTATAG-CTCATGGTTTTTAGCGGCGCTTAACCAAC
1 AAACGCCGCTATAGAC-CATGGTCTTTAGCGGCGCTTAACCATC
*
17857211 AAACGCCGCTATAG-CTCATGGTTTTTAGCGGCGCTT
1 AAACGCCGCTATAGAC-CATGGTCTTTAGCGGCGCTT
17857247 TTAGAAAAAC
Statistics
Matches: 512, Mismatches: 35, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
42 7 0.01
43 499 0.97
44 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATGGTCTTTAGCGGCGCTTAACCATC
Found at i:17857586 original size:21 final size:21
Alignment explanation
Indices: 17857560--17857618 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
17857550 TTTAAGCTGT
17857560 TCTACTTCCCTCGCTGCAGCC
1 TCTACTTCCCTCGCTGCAGCC
17857581 TCTACTTCCCTCGCTGCAGCC
1 TCTACTTCCCTCGCTGCAGCC
* *
17857602 TCTGCTTCTCTCGCTGC
1 TCTACTTCCCTCGCTGC
17857619 CGTATCTGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.07, C:0.46, G:0.15, T:0.32
Consensus pattern (21 bp):
TCTACTTCCCTCGCTGCAGCC
Found at i:17857683 original size:87 final size:87
Alignment explanation
Indices: 17857579--17857766 Score: 234
Period size: 87 Copynumber: 2.2 Consensus size: 87
17857569 CTCGCTGCAG
* * * * *
17857579 CCTCTACTTCCCTCGCTGCAGCCTCTGCTTCTCTCGCTGCCGTATCTGCTTTAAGCTGTTGCTGG
1 CCTCAACTTCTCTCGCTGCAGCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGCTGTAGCTGG
*
17857644 ACTTGTTCATA-CTTTCGTTGAA
66 ACTTCTTCATATCTTT-GTTGAA
* * * *
17857666 CCTCAACTTCTCTCGCTGCTGCCTCTGCTTCTCTTACTGCCGCATCTTCTTTAAGTTGTAGCTGG
1 CCTCAACTTCTCTCGCTGCAGCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGCTGTAGCTGG
* * *
17857731 AGTTCTTTATATCTTTTTTGAA
66 ACTTCTTCATATCTTTGTTGAA
*
17857753 CCTCAGCTTCTCTC
1 CCTCAACTTCTCTC
17857767 AATGTTGCCT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
87 82 0.95
88 4 0.05
ACGTcount: A:0.12, C:0.31, G:0.16, T:0.40
Consensus pattern (87 bp):
CCTCAACTTCTCTCGCTGCAGCCTCTGCTTCTCTCACTGCCGCATCTGCTTTAAGCTGTAGCTGG
ACTTCTTCATATCTTTGTTGAA
Found at i:17865011 original size:16 final size:16
Alignment explanation
Indices: 17864990--17865020 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17864980 GTAAATAGAG
17864990 TTAGGGATTTCAGAAC
1 TTAGGGATTTCAGAAC
*
17865006 TTAGGGATTTTAGAA
1 TTAGGGATTTCAGAA
17865021 GAGAAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (16 bp):
TTAGGGATTTCAGAAC
Found at i:17865807 original size:23 final size:23
Alignment explanation
Indices: 17865764--17865808 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
17865754 TGCTTTTGTA
*
17865764 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
17865787 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
17865809 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:17866586 original size:23 final size:23
Alignment explanation
Indices: 17866543--17866587 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
17866533 TGCTTTTGTA
*
17866543 CCCTAAAACCCGAAGCTATTAAT
1 CCCTAAAACCCGAAACTATTAAT
*
17866566 CCCTATAACCCGTAAAC-ATTAA
1 CCCTAAAACCCG-AAACTATTAA
17866588 AATTAAAGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (23 bp):
CCCTAAAACCCGAAACTATTAAT
Found at i:17866815 original size:779 final size:781
Alignment explanation
Indices: 17865435--17867010 Score: 2757
Period size: 779 Copynumber: 2.0 Consensus size: 781
17865425 AATAAACGCC
*
17865435 ACAAATCTTGTTCTATAGCAGCGTTTTCTGTATAAGCGCCGCTAATTTTTCAATTTATTTTATTT
1 ACAAATCTTGTTCTATAGCAGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
* *
17865500 GTCTTTATTTATAAGTTTAATGATTTTTAATAGAATTTTTTTTGATAATTGTTATGACATTATTT
66 GACTTTATTTATAAGTCTAATGATTTTTAATAGAATTTTTTTTGATAATTGTTATGACATTATTT
*
17865565 TAAATTGATACATTAATATGCATTAATAAAATTATTTCAATTTTATGCAGTATATATAATATATA
131 TAAATTGATACATTAATATGAATTAATAAAATTATTTCAATTTTATGCAGTATATATAATATATA
17865630 ACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCCTA
196 ACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCCTA
17865695 TATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAAATTTTTTTTTTGCTTT
261 TATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAAATTTTTTTTTTGCTTT
17865760 TGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACC
326 TGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACC
17865825 CTAGCTAACTCATATTCTTCATGCAAATCCGAACGCAAAAACCAAGCATTGTAACATTCAAATCA
391 CTAGCTAACTCATATTCTTCATGCAAATCCGAACGCAAAAACCAAGCATTGTAACATTCAAATCA
17865890 ATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCATTACATCTTA
456 ATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCATTACATCTTA
17865955 TAAGCCGTAAACCTCGCATTAAAACTAACATTATGTAAACTCAAACCCTAAACCCCATTCCTCAA
521 TAAGCCGTAAACCTCGCATTAAAACTAACATTATGTAAACTCAAACCCTAAACCCCATTCCTCAA
* *
17866020 ACTGTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCTTAAATTAATAAACATTATGTA
586 ACCGTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTA
* * *
17866085 TCGAACCCTAAAACCCCAAACCGTATGCAACAAAACTTAAATATTAATCCCAATACCCTAAAATA
651 TCGAACCCTAAAAACCCAAACCGTATACAACAAAACTTAAATATTAATCCCAAAACCCTAAAATA
17866150 CATAACTTTCA-TT-AAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
716 CATAACTTTCATTTAAAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
17866213 T
781 T
* *
17866214 ACAATTCTTGTTCTATAGCGGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
1 ACAAATCTTGTTCTATAGCAGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
* *
17866279 GACTTTATTTATAAGTCTAATGATTTTTAGTAGATTTTTTATTTTGATAATTGTTATGACATTAT
66 GACTTTATTTATAAGTCTAATGATTTTTAATAGA-ATTTT-TTTTGATAATTGTTATGACATTAT
** *
17866344 TTTAAATTGATACATTAATATGAATTTGTAAAATTATTTCAATTTTATGCAGTATGTATAATATA
129 TTTAAATTGATACATTAATATGAATTAATAAAATTATTTCAATTTTATGCAGTATATATAATATA
17866409 TAACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCC
194 TAACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCC
17866474 TATATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTT-AA-TTTTTTTTTGCT
259 TATATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAAATTTTTTTTTTGCT
17866537 TTTGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAA
324 TTTGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAA
* *
17866602 CCCTAGCTAACTCGTATTCTTCATGCAAATCCGAACGCAAAAATCAAGCATTGTAACATTCAAAT
389 CCCTAGCTAACTCATATTCTTCATGCAAATCCGAACGCAAAAACCAAGCATTGTAACATTCAAAT
17866667 CAATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCATTACATCT
454 CAATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCATTACATCT
17866732 TATAAGCCGTAAACCTCGCATTAAAACTAACATTATGTAAACTCAAACCCTAAACCCCATTCCTC
519 TATAAGCCGTAAACCTCGCATTAAAACTAACATTATGTAAACTCAAACCCTAAACCCCATTCCTC
* * * *
17866797 AAGCCGT-AACCTTAAACCCAAAATCCTAAATATAAAATTGTAATCCTAAATTAATAAACATTAT
584 AAACCGTAAACC-TAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTAT
* *
17866861 GTATTGAACCCTAAAAATCCAAACCGTATACAACAAAACTTAAATATTAATCCCAAAACCCTAAA
648 GTATCGAACCCTAAAAACCCAAACCGTATACAACAAAACTTAAATATTAATCCCAAAACCCTAAA
17866926 ATACATAACTTTCATTTGTCGCGTTTTTACAAAAAACGCCGCTAATACCAATAAACAGTATAAAA
713 ATACATAACTTTCA-----------TTT--AAAAAACGCCGCTAATACCAATAAACAGTATAAAA
17866991 ACGAAGTCGTTTCGGTT
765 ACGAAGTCGTTTCGGTT
17867008 ACA
1 ACA
17867011 CATTTTGCGG
Statistics
Matches: 755, Mismatches: 24, Indels: 21
0.94 0.03 0.03
Matches are distributed among these distances:
778 4 0.01
779 490 0.65
780 6 0.01
781 199 0.26
791 2 0.00
794 54 0.07
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (781 bp):
ACAAATCTTGTTCTATAGCAGCGTTTTCTGTATAAACGCCGCTAATTTTTCAATTTATTTTATTT
GACTTTATTTATAAGTCTAATGATTTTTAATAGAATTTTTTTTGATAATTGTTATGACATTATTT
TAAATTGATACATTAATATGAATTAATAAAATTATTTCAATTTTATGCAGTATATATAATATATA
ACATATATGCATAGATATATATCGTGGCATATATTATATATATAACCCTGTCACTTATAATCCTA
TATATATACTAGTGACATAATAAGAAGTAAAAAGCAGAAAGAATTTTAAATTTTTTTTTTGCTTT
TGTACCCTAAAACCCGAAGCTATTAATCCCTATAACCCGTAAACATTAAAATTAAAGGCTAAACC
CTAGCTAACTCATATTCTTCATGCAAATCCGAACGCAAAAACCAAGCATTGTAACATTCAAATCA
ATAAGGGTGAACCATAAACCATAAACATCAAGCCGTAAAACAGTAAATTTGATCATTACATCTTA
TAAGCCGTAAACCTCGCATTAAAACTAACATTATGTAAACTCAAACCCTAAACCCCATTCCTCAA
ACCGTAAACCTAAACCCAAAACCCTAAACATAAAATTATAATCCTAAATTAATAAACATTATGTA
TCGAACCCTAAAAACCCAAACCGTATACAACAAAACTTAAATATTAATCCCAAAACCCTAAAATA
CATAACTTTCATTTAAAAAACGCCGCTAATACCAATAAACAGTATAAAAACGAAGTCGTTTCGGT
T
Found at i:17867522 original size:41 final size:41
Alignment explanation
Indices: 17867477--17867555 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
17867467 TAGATTTTCT
* * * *
17867477 AATTAGCGGCGTTTTTACACAAATGCCGCTATAGACCGAAG
1 AATTACCGGCGCTGTTACACAAACGCCGCTATAGACCGAAG
17867518 AATTACCGGCGCTGTTACACAAACGCCGCTATAGACCG
1 AATTACCGGCGCTGTTACACAAACGCCGCTATAGACCG
17867556 GAACATTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (41 bp):
AATTACCGGCGCTGTTACACAAACGCCGCTATAGACCGAAG
Found at i:17867891 original size:40 final size:40
Alignment explanation
Indices: 17867840--17867987 Score: 131
Period size: 40 Copynumber: 3.7 Consensus size: 40
17867830 TTACTCTATT
* * *
17867840 GCGGCGCTTTTTGTAAAACGCCGCTAATGCTTGGT-TTTA
1 GCGGCGTTTTTTGTAAAACGCCGCTAATGCTCGATATTTA
* * *
17867879 GCGGTGTTTTTT-TATGTAACGCCGCTAATGCTCGATATTTT
1 GCGGCGTTTTTTGTA--AAACGCCGCTAATGCTCGATATTTA
* *
17867920 GCGGCGTTTTTCGTAAAATGCCGCTAATGCTCGAT-TGTTA
1 GCGGCGTTTTTTGTAAAACGCCGCTAATGCTCGATAT-TTA
* * * *
17867960 GTGGCATTTTTTGTCCAAATGCCGCTAA
1 GCGGCGTTTTTTGT-AAAACGCCGCTAA
17867988 AAGCGCCGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
38 2 0.02
39 11 0.12
40 48 0.55
41 25 0.28
42 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (40 bp):
GCGGCGTTTTTTGTAAAACGCCGCTAATGCTCGATATTTA
Found at i:17868457 original size:21 final size:21
Alignment explanation
Indices: 17868433--17868483 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
17868423 TTCTTTTGAA
*
17868433 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
17868454 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
*
17868475 CGTCTGCTT
1 CCTCTGCTT
17868484 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.45, G:0.20, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:17868536 original size:87 final size:87
Alignment explanation
Indices: 17868368--17868527 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
17868358 TTCTGCTCTG
* * *
17868368 CTCTTCTTCTCTCGATGCCGCATCAGCTTTAAGTCGTACCTGGAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCCCTCGATGCCGCATCAGCTTTAAGTCGTACCTGGAGTTCTTCATATTTCCTTTGAA
* *
17868433 CCTCTGCTTCTCTCGCTGCAGC
66 CCTCAGCTTCGCTCGCTGCAGC
* * * * *
17868455 CTCTGCTTCCCTCGCTGCCGCGTCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
1 CTCTGCTTCCCTCGATGCCGCATCAGCTTTAAGTCGTACCTGGAGTTCTTCATATTTCCTTTGAA
17868520 CCTCAGCT
66 CCTCAGCT
17868528 GTGGTCGCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 64 1.00
ACGTcount: A:0.13, C:0.31, G:0.17, T:0.39
Consensus pattern (87 bp):
CTCTGCTTCCCTCGATGCCGCATCAGCTTTAAGTCGTACCTGGAGTTCTTCATATTTCCTTTGAA
CCTCAGCTTCGCTCGCTGCAGC
Found at i:17873969 original size:7 final size:7
Alignment explanation
Indices: 17873959--17873995 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
17873949 TGATATATTT
17873959 TTATGTA
1 TTATGTA
17873966 TTATGTAA
1 TTATGT-A
17873974 GTTATGTA
1 -TTATGTA
17873982 TTATGTA
1 TTATGTA
17873989 TTATGTA
1 TTATGTA
17873996 AGTACTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 20 0.71
8 2 0.07
9 6 0.21
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (7 bp):
TTATGTA
Found at i:17874597 original size:21 final size:21
Alignment explanation
Indices: 17874573--17874698 Score: 91
Period size: 21 Copynumber: 6.0 Consensus size: 21
17874563 TTAAGTAAGC
*
17874573 TATGTAAGTTATGGAAGTTAT
1 TATGTAAGTTATGCAAGTTAT
*
17874594 TATGTAAGTTATACAAGCTTA-
1 TATGTAAGTTATGCAAG-TTAT
* * *
17874615 TATATAAGTTGTGTATTATGTTAT
1 TATGTAAGTTATGCA--A-GTTAT
**
17874639 TATGT-A-TTATGTTA-TTA-
1 TATGTAAGTTATGCAAGTTAT
* *
17874656 TATATAAGTTATGGAAGTTAT
1 TATGTAAGTTATGCAAGTTAT
17874677 TATGTAAGTTATGCAAGCTTAT
1 TATGTAAGTTATGCAAG-TTAT
17874699 ATACCAATTA
Statistics
Matches: 81, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
17 4 0.05
18 4 0.05
19 6 0.07
20 4 0.05
21 41 0.51
22 12 0.15
23 5 0.06
24 5 0.06
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.46
Consensus pattern (21 bp):
TATGTAAGTTATGCAAGTTAT
Found at i:17874605 original size:9 final size:9
Alignment explanation
Indices: 17873966--17874593 Score: 492
Period size: 9 Copynumber: 70.4 Consensus size: 9
17873956 TTTTTATGTA
17873966 TTATGTAAG
1 TTATGTAAG
17873975 TTATGT-A-
1 TTATGTAAG
17873982 TTATGT-A-
1 TTATGTAAG
17873989 TTATGTAAG
1 TTATGTAAG
17873998 -TACTGTAAG
1 TTA-TGTAAG
*
17874007 TAATGTAAG
1 TTATGTAAG
17874016 TTATGTAAG
1 TTATGTAAG
*
17874025 TAATGT-A-
1 TTATGTAAG
17874032 TTATGTAAG
1 TTATGTAAG
*
17874041 TTGTGTATA-
1 TTATGTA-AG
*
17874050 ATAT-TAA-
1 TTATGTAAG
*
17874057 TTATGTGAG
1 TTATGTAAG
*
17874066 TTGTGT-A-
1 TTATGTAAG
*
17874073 TAATGTAAG
1 TTATGTAAG
*
17874082 TTAAG-AAGG
1 TTATGTAA-G
17874091 TTATGT-A-
1 TTATGTAAG
*
17874098 TAATGTAAG
1 TTATGTAAG
17874107 TTATGTAAG
1 TTATGTAAG
* * *
17874116 TAATTTAAT
1 TTATGTAAG
17874125 TTATGTAAG
1 TTATGTAAG
17874134 TTATGTAAG
1 TTATGTAAG
* *
17874143 TTATTTAAT
1 TTATGTAAG
17874152 TTATGTAAG
1 TTATGTAAG
17874161 TTATGTAAG
1 TTATGTAAG
**
17874170 TTAATAATGCCAG
1 -T--T-ATGTAAG
17874183 TTTATGTAAG
1 -TTATGTAAG
* *
17874193 TTATTTAAT
1 TTATGTAAG
*
17874202 TTATGTAGG
1 TTATGTAAG
17874211 TTATGTAAG
1 TTATGTAAG
* * * *
17874220 TCCACGGAAT
1 T-TATGTAAG
17874230 TTATGTAAG
1 TTATGTAAG
17874239 TTATGTAAG
1 TTATGTAAG
* *
17874248 TTATTTAAT
1 TTATGTAAG
17874257 TTATGTAAG
1 TTATGTAAG
** *
17874266 TTATAAAAT
1 TTATGTAAG
17874275 TTATGTAAG
1 TTATGTAAG
17874284 TTATGTAAG
1 TTATGTAAG
* *
17874293 TTATTTAAT
1 TTATGTAAG
17874302 TTATGTAAG
1 TTATGTAAG
17874311 TTATGTAAG
1 TTATGTAAG
*
17874320 TTAT-TTAG
1 TTATGTAAG
17874328 TTTATGTTAAG
1 -TTATG-TAAG
17874339 TTATGTAAG
1 TTATGTAAG
*
17874348 TTAAT-TAAT
1 TT-ATGTAAG
17874357 TTATGTAAG
1 TTATGTAAG
17874366 TTATGTAAG
1 TTATGTAAG
17874375 TTATGTAAG
1 TTATGTAAG
* *
17874384 TTATTTAAT
1 TTATGTAAG
*
17874393 TTATATAAG
1 TTATGTAAG
*
17874402 TTATGTAAA
1 TTATGTAAG
* *
17874411 TTATTTAAT
1 TTATGTAAG
17874420 TTATGTAAG
1 TTATGTAAG
17874429 TTATGTAAG
1 TTATGTAAG
17874438 TTATGTAAG
1 TTATGTAAG
17874447 TTATGTAAG
1 TTATGTAAG
* *
17874456 TTATTTAAT
1 TTATGTAAG
17874465 TTATGTAAG
1 TTATGTAAG
17874474 TTATGTAAG
1 TTATGTAAG
* *
17874483 TTATTTAAT
1 TTATGTAAG
*
17874492 TTATGTGAG
1 TTATGTAAG
* *
17874501 TTTCTATATATG
1 --T-TATGTAAG
*
17874513 TT-TATATA-
1 TTATGTA-AG
17874521 TTATGTAAG
1 TTATGTAAG
*
17874530 TTATGTACG
1 TTATGTAAG
17874539 TGTA--TAAG
1 T-TATGTAAG
17874547 TTATGTAAG
1 TTATGTAAG
17874556 TTATGT-A-
1 TTATGTAAG
*
17874563 TTAAGTAAG
1 TTATGTAAG
*
17874572 CTATGTAAG
1 TTATGTAAG
*
17874581 TTATGGAAG
1 TTATGTAAG
17874590 TTAT
1 TTAT
17874594 TATGTAAGTT
Statistics
Matches: 489, Mismatches: 94, Indels: 72
0.75 0.14 0.11
Matches are distributed among these distances:
7 38 0.08
8 33 0.07
9 377 0.77
10 23 0.05
11 5 0.01
12 6 0.01
13 7 0.01
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:17874641 original size:8 final size:8
Alignment explanation
Indices: 17874628--17874656 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
17874618 ATAAGTTGTG
17874628 TATTATGT
1 TATTATGT
17874636 TATTATG-
1 TATTATGT
17874643 TATTATGT
1 TATTATGT
17874651 TATTAT
1 TATTAT
17874657 ATATAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (8 bp):
TATTATGT
Found at i:17874646 original size:15 final size:15
Alignment explanation
Indices: 17874626--17874656 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
17874616 ATATAAGTTG
17874626 TGTATTATGTTATTA
1 TGTATTATGTTATTA
17874641 TGTATTATGTTATTA
1 TGTATTATGTTATTA
17874656 T
1 T
17874657 ATATAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (15 bp):
TGTATTATGTTATTA
Found at i:17874664 original size:83 final size:83
Alignment explanation
Indices: 17874577--17874730 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 83
17874567 GTAAGCTATG
* *
17874577 TAAGTTATGGAAGTTATTATGTAAGTTATACAAGCTTATATA-TAAGTTGTGTATTATGTTATTA
1 TAAGTTATGGAAGTTATTATGTAAGTTATACAAGCTTATATACCAA-TTATGTATTATGTTATTA
17874641 TGTATTATGTTATTATATA
65 TGTATTATGTTATTATATA
* *
17874660 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATACCAATTATGTATTGTGTTATTAT
1 TAAGTTATGGAAGTTATTATGTAAGTTATACAAGCTTATATACCAATTATGTATTATGTTATTAT
17874725 GTATTA
66 GTATTA
17874731 AGTAAGCAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
83 64 0.97
84 2 0.03
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (83 bp):
TAAGTTATGGAAGTTATTATGTAAGTTATACAAGCTTATATACCAATTATGTATTATGTTATTAT
GTATTATGTTATTATATA
Found at i:17874947 original size:61 final size:61
Alignment explanation
Indices: 17874880--17875023 Score: 175
Period size: 61 Copynumber: 2.4 Consensus size: 61
17874870 AAAAAAATAT
* * * *
17874880 AATTATTTACAAAACGTGTAAAATTGATACTTA-TAAA-TTTTATTAATAATAAATCTAGAAC
1 AATTATTTAGAAAACGTATAAAATTAATAC-TACTAAATTTTTA-TAATAATAAATCTAGAAA
* * * *
17874941 ACTTATTTAGAAAACTTATAAAATTAATACTACTAAATTTTTATACTAATAAATTTAGAAA
1 AATTATTTAGAAAACGTATAAAATTAATACTACTAAATTTTTATAATAATAAATCTAGAAA
*
17875002 AATTATTTAGAAAACTTATAAA
1 AATTATTTAGAAAACGTATAAA
17875024 TTTAGAAAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
60 2 0.03
61 65 0.90
62 5 0.07
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (61 bp):
AATTATTTAGAAAACGTATAAAATTAATACTACTAAATTTTTATAATAATAAATCTAGAAA
Found at i:17875023 original size:30 final size:30
Alignment explanation
Indices: 17874989--17875045 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
17874979 TTTTATACTA
*
17874989 ATAAATTTAGAAAAATTATTTAGAAAACTT
1 ATAAATTTAGAAAAATTATATAGAAAACTT
*
17875019 ATAAATTTAGAAAACTTATATAGAAAA
1 ATAAATTTAGAAAAATTATATAGAAAA
17875046 TAAAACAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (30 bp):
ATAAATTTAGAAAAATTATATAGAAAACTT
Found at i:17875028 original size:17 final size:17
Alignment explanation
Indices: 17875006--17875038 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
17874996 TAGAAAAATT
17875006 ATTTAGAAAACTTATAA
1 ATTTAGAAAACTTATAA
17875023 ATTTAGAAAACTTATA
1 ATTTAGAAAACTTATA
17875039 TAGAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
ATTTAGAAAACTTATAA
Found at i:17875367 original size:39 final size:37
Alignment explanation
Indices: 17875305--17875380 Score: 89
Period size: 39 Copynumber: 2.0 Consensus size: 37
17875295 GGTTAAGGTA
*
17875305 TTTTACGGCGCTTACAAATAAACGCCACTAATGATGTTC
1 TTTTACGGCGCTTACAAAAAAACGCCACT-A-GATGTTC
* ** *
17875344 TTTTACGGCGTTTTTAAAAAAACGTCACTAGATGTTC
1 TTTTACGGCGCTTACAAAAAAACGCCACTAGATGTTC
17875381 GGGTTTTTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 7 0.22
38 1 0.03
39 24 0.75
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (37 bp):
TTTTACGGCGCTTACAAAAAAACGCCACTAGATGTTC
Found at i:17886982 original size:50 final size:50
Alignment explanation
Indices: 17886914--17887363 Score: 232
Period size: 50 Copynumber: 9.5 Consensus size: 50
17886904 GTGAAACCAT
* * *
17886914 AAATCTTATACCCCTGAAGTTACAGTGGGTCGGATTGAATCTACCATAGC
1 AAATCTTATACCCTTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
* * *
17886964 GAATCTTAT-CTCCTTGAAGTTGCAGTAGAG-CAGATT-AA---AGC-TA-C
1 AAATCTTATAC-CCTTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGC
* *
17887008 AAATCCTATACCCTTAAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
1 AAATCTTATACCCTTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
* * * *
17887058 AAATCTTAT-CTCATTGAAGTTGCAGTAGAG-CATATT-AA---AGC-TA-C
1 AAATCTTATAC-CCTTGAAGTTGCAGT-GGGTCAGATTGAATCTACCATAGC
* * *
17887102 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGGTTGAATCTACCATAGC
1 AAATCTTATACCCTTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
* * * * *
17887152 AAATCTTAT-CTCCCTAAAGTTGTAGTGGAG-CAAATTGAAGCTA--A-A--
1 AAATCTTATAC-CCTTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGC
* * * * *
17887197 AATTC-TATACCCTTGAAGTTGCAATGGATCAGATTGAATCTACCACAGA
1 AAATCTTATACCCTTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
* ** * *
17887246 AAATCTTGTGTTCC-TGAAGTTACAGTGGAG-CAAGA-TGAAGCTA-C--A--
1 AAATCTTAT-ACCCTTGAAGTTGCAGTGG-GTC-AGATTGAATCTACCATAGC
* * * * * *
17887291 AATTC-TATACCCCTAAAGTTGCAGTGGGTC-GAATAGAATCTACCACAAC
1 AAATCTTATACCCTTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGC
17887340 AAATCTTAT-CTCCTTGAAGTTGCA
1 AAATCTTATAC-CCTTGAAGTTGCA
17887364 ATGGAGCAAA
Statistics
Matches: 299, Mismatches: 57, Indels: 88
0.67 0.13 0.20
Matches are distributed among these distances:
42 1 0.00
43 8 0.03
44 102 0.34
45 20 0.07
46 5 0.02
47 4 0.01
48 5 0.02
49 21 0.07
50 123 0.41
51 10 0.03
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (50 bp):
AAATCTTATACCCTTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGC
Found at i:17887043 original size:44 final size:43
Alignment explanation
Indices: 17886975--17887219 Score: 143
Period size: 44 Copynumber: 5.3 Consensus size: 43
17886965 AATCTTATCT
*
17886975 CCTTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCCTATAC
1 CCTTGAAGTTGCAGT-GGGCAGATTAAAGCTACAAATCCTATAC
* * *
17887019 CCTTAAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTAT-C
1 CCTTGAAGTTGCAGTGGG-CAGATT-AA---AGC-TA-CAAATCCTATAC
* * *
17887068 TCATTGAAGTTGCAGTAGAGCATATTAAAGCTACAAATCCTATAC
1 -CCTTGAAGTTGCAGT-GGGCAGATTAAAGCTACAAATCCTATAC
* * * *
17887113 CCCTGAAGTTGCAGTGGGTCAGGTTGAATCTACCATAGCAAATCTTAT-C
1 CCTTGAAGTTGCAGTGGG-CAGATT-AA---AGC-TA-CAAATCCTATAC
* * * * * * *
17887162 TCCCTAAAGTTGTAGTGGAGCAAATTGAAGCTAAAAATTCTATAC
1 -CCTTGAAGTTGCAGTGG-GCAGATTAAAGCTACAAATCCTATAC
17887207 CCTTGAAGTTGCA
1 CCTTGAAGTTGCA
17887220 ATGGATCAGA
Statistics
Matches: 152, Mismatches: 29, Indels: 40
0.69 0.13 0.18
Matches are distributed among these distances:
43 4 0.03
44 63 0.41
45 10 0.07
46 4 0.03
48 4 0.03
49 9 0.06
50 55 0.36
51 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (43 bp):
CCTTGAAGTTGCAGTGGGCAGATTAAAGCTACAAATCCTATAC
Found at i:17887075 original size:94 final size:94
Alignment explanation
Indices: 17886914--17887363 Score: 564
Period size: 94 Copynumber: 4.8 Consensus size: 94
17886904 GTGAAACCAT
* * * *
17886914 AAATCTTATACCCCTGAAGTTACAGTGGGTCGGATTGAATCTACCATAGCGAATCTTATCTCCTT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTATCTCCTT
17886979 GAAGTTGCAGTAGAGCAGATTAAAGCTAC
66 GAAGTTGCAGTAGAGCAGATTAAAGCTAC
* * *
17887008 AAATCCTATACCCTTAAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTATCTCATT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTATCTCCTT
*
17887073 GAAGTTGCAGTAGAGCATATTAAAGCTAC
66 GAAGTTGCAGTAGAGCAGATTAAAGCTAC
* *
17887102 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGGTTGAATCTACCATAGCAAATCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTATCTCCTT
* * * * * *
17887167 AAAGTTGTAGTGGAGCAAATTGAAGCTAA
66 GAAGTTGCAGTAGAGCAGATTAAAGCTAC
* * * * * * * *
17887196 AAATTCTATACCCTTGAAGTTGCAATGGATCAGATTGAATCTACCACAGAAAATCTTGTGTTCC-
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTAT-CTCCT
* * *
17887260 TGAAGTTACAGTGGAGCAAGA-TGAAGCTAC
65 TGAAGTTGCAGTAGAGC-AGATTAAAGCTAC
* * * * *
17887290 AAATTCTATACCCCTAAAGTTGCAGTGGGTC-GAATAGAATCTACCACAACAAATCTTATCTCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCAAATCTTATCTCCT
17887354 TGAAGTTGCA
65 TGAAGTTGCA
17887364 ATGGAGCAAA
Statistics
Matches: 309, Mismatches: 43, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
93 4 0.01
94 300 0.97
95 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (94 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCAAATCTTATCTCCTT
GAAGTTGCAGTAGAGCAGATTAAAGCTAC
Found at i:17889381 original size:43 final size:42
Alignment explanation
Indices: 17889274--17889544 Score: 267
Period size: 43 Copynumber: 6.4 Consensus size: 42
17889264 CGTTTACAAA
* * * *
17889274 AAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTCAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAT
* * ** *
17889316 AAAAAACGCCACTAAAGATCATGTTCTTTAACGGTTCTTAAC
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAT
17889358 AAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAA-
1 AAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAT
* **
17889400 AGAAAAACGCCGCTAAAGATCATATTCTTTAGCGGCGCTTGGT
1 A-AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAT
* * * *
17889443 AAAAAAACGCCGTTATAGATCATGTTCTTTAGTGGCGCTTTCAT
1 -AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTAAT
* * * * * *
17889487 CACAAACGCCGCGAAA-AGTAATGTTCTTTAGCGACGCTTTTAT
1 AAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGC-TTAAT
*
17889530 AAAAAACGCCACTAA
1 AAAAAACGCCGCTAA
17889545 TTTTGGGATT
Statistics
Matches: 189, Mismatches: 34, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
42 74 0.39
43 111 0.59
44 4 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAT
Found at i:17889447 original size:85 final size:85
Alignment explanation
Indices: 17889273--17889482 Score: 260
Period size: 85 Copynumber: 2.5 Consensus size: 85
17889263 GCGTTTACAA
* * * *
17889273 AAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTCATAAAAAACGCCACTAAAGATCAT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCCACTAAAGATCAT
* **
17889338 GTTCTTTAACGGTTCTTAAC
66 ATTCTTTAACGGCGCTTAAC
* *
17889358 AAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-AAAGAAAAACGCCGCTAAAGATCA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCAAA-AAAAACGCCACTAAAGATCA
* ***
17889422 TATTCTTTAGCGGCGCTTGGT
65 TATTCTTTAACGGCGCTTAAC
* * *
17889443 AAAAAAACGCCGTTATAGATCATGTTCTTTAGTGGCGCTT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
17889483 TCATCACAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 2 0.02
85 105 0.98
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (85 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCAAAAAAAACGCCACTAAAGATCAT
ATTCTTTAACGGCGCTTAAC
Found at i:17889539 original size:86 final size:85
Alignment explanation
Indices: 17889273--17889544 Score: 226
Period size: 85 Copynumber: 3.2 Consensus size: 85
17889263 GCGTTTACAA
* * * * * * *
17889273 AAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTCATA-AAAAACGCCACTAAAGATCA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-AAACAAAAACGCCGCAAAAGATAA
* * *** ***
17889337 TGTTCTTTAACGGTTCTTAAC
65 TATTCTTTAGCGACGCTTGGT
* * * *
17889358 AAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAGAAAAACGCCGCTAAAGATCAT
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAACAAAAACGCCGCAAAAGATAAT
*
17889423 ATTCTTTAGCGGCGCTTGGT
66 ATTCTTTAGCGACGCTTGGT
* * * * * *
17889443 AAAAAAACGCCGTTATAGATCATGTTCTTTAGTGGCGCTTTCATCACAAACGCCGCGAAAAG-TA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTAAACAAAAACGCCGC-AAAAGATA
* *
17889507 ATGTTCTTTAGCGACGCTT-TT
64 ATATTCTTTAGCGACGCTTGGT
*
17889528 ATAAAAAACGCCACTAA
1 A-AAAAAACGCCGCTAA
17889545 TTTTGGGATT
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
84 2 0.01
85 105 0.68
86 43 0.28
87 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (85 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAACAAAAACGCCGCAAAAGATAAT
ATTCTTTAGCGACGCTTGGT
Found at i:17889952 original size:21 final size:21
Alignment explanation
Indices: 17889928--17889976 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
17889918 GCTTCTCTCG
17889928 CTGCTTCTCACGCTGCAGCCT
1 CTGCTTCTCACGCTGCAGCCT
* *
17889949 CTGCTTCTCTCGCTGGAGCCT
1 CTGCTTCTCACGCTGCAGCCT
17889970 CTGCTTC
1 CTGCTTC
17889977 CCTCATTGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.06, C:0.41, G:0.20, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCACGCTGCAGCCT
Found at i:17895482 original size:9 final size:9
Alignment explanation
Indices: 17895465--17895811 Score: 298
Period size: 9 Copynumber: 39.8 Consensus size: 9
17895455 TATGTATTAA
*
17895465 GTAAATTAT
1 GTAAGTTAT
17895474 GTAAGTTAT
1 GTAAGTTAT
*
17895483 GTACGTGTAT
1 GTAAGT-TAT
17895493 GT-A-TTAT
1 GTAAGTTAT
17895500 GTAAGTTAT
1 GTAAGTTAT
*
17895509 GT-A-TTAA
1 GTAAGTTAT
*
17895516 GTAAGCTAT
1 GTAAGTTAT
*
17895525 GTAAGTTGT
1 GTAAGTTAT
17895534 GT-A-TTAT
1 GTAAGTTAT
17895541 GTAAGTTAT
1 GTAAGTTAT
17895550 GTAAGTTAT
1 GTAAGTTAT
** *
17895559 CAAAGTAAT
1 GTAAGTTAT
*
17895568 GTATGTTAT
1 GTAAGTTAT
17895577 GTAAG-T-T
1 GTAAGTTAT
17895584 GTAAGTTAT
1 GTAAGTTAT
17895593 -TAAGTATTAT
1 GTAAG--TTAT
17895603 GTAAGTTAT
1 GTAAGTTAT
17895612 GTAAGTTAT
1 GTAAGTTAT
17895621 GTAAGTTAAAT
1 GTAAGTT--AT
17895632 GT-A-TTAT
1 GTAAGTTAT
*
17895639 GTAGGTTAT
1 GTAAGTTAT
*
17895648 GTAAGTTGT
1 GTAAGTTAT
*
17895657 GTAAGATAT
1 GTAAGTTAT
*
17895666 TTAAGTTAT
1 GTAAGTTAT
*
17895675 GTAAGTTTT
1 GTAAGTTAT
17895684 GT-A-TTAT
1 GTAAGTTAT
17895691 GTAAGTTAT
1 GTAAGTTAT
17895700 GTAAGTTAT
1 GTAAGTTAT
*
17895709 GTAAGTTAA
1 GTAAGTTAT
*
17895718 ATATA-TTAT
1 GTA-AGTTAT
*
17895727 GTAGGTTAT
1 GTAAGTTAT
*
17895736 GTAAGTTGT
1 GTAAGTTAT
*
17895745 GTAAAGATAT
1 GT-AAGTTAT
*
17895755 TTAAGTTAT
1 GTAAGTTAT
*
17895764 GTAAGTTTT
1 GTAAGTTAT
17895773 GT-A-TTAT
1 GTAAGTTAT
17895780 GTAAGTTAT
1 GTAAGTTAT
* *
17895789 GTATGCTAT
1 GTAAGTTAT
17895798 GT-A-TTAT
1 GTAAGTTAT
17895805 GTAAGTT
1 GTAAGTT
17895812 GTTATGTTAT
Statistics
Matches: 268, Mismatches: 45, Indels: 50
0.74 0.12 0.14
Matches are distributed among these distances:
7 40 0.15
8 17 0.06
9 186 0.69
10 17 0.06
11 8 0.03
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:17895485 original size:25 final size:25
Alignment explanation
Indices: 17895454--17895558 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
17895444 TGATATATAT
17895454 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
*
17895479 TTATGTACGTGTATGT--ATTATGTAAG
1 TTATGTA--T-TAAGTAAATTATGTAAG
**
17895505 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* * *
17895530 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
17895555 TTAT
1 TTAT
17895559 CAAAGTAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
23 4 0.06
24 1 0.01
25 40 0.60
26 17 0.25
27 1 0.01
28 4 0.06
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:17895520 original size:16 final size:16
Alignment explanation
Indices: 17895454--17895527 Score: 76
Period size: 16 Copynumber: 4.4 Consensus size: 16
17895444 TGATATATAT
*
17895454 TTATGTATTAAGTAAA
1 TTATGTATTAAGTAAG
* *
17895470 TTATGTAAGTTATGTACG
1 TTATGT-A-TTAAGTAAG
*
17895488 TGTATGTATTATGTAAG
1 T-TATGTATTAAGTAAG
17895505 TTATGTATTAAGTAAG
1 TTATGTATTAAGTAAG
*
17895521 CTATGTA
1 TTATGTA
17895528 AGTTGTGTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
16 26 0.53
17 10 0.20
18 8 0.16
19 5 0.10
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.45
Consensus pattern (16 bp):
TTATGTATTAAGTAAG
Found at i:17895646 original size:27 final size:29
Alignment explanation
Indices: 17895472--17895901 Score: 179
Period size: 25 Copynumber: 15.9 Consensus size: 29
17895462 TAAGTAAATT
*
17895472 ATGTAAGTTATGTACGTGTATGT-A-TT--
1 ATGTAAGTTATGTAAGT-TATGTAAGTTAA
* *
17895498 ATGTAAGTTATGT-A-TTAAGTAAGCT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
*
17895523 ATGTAAGTTGTGT-A-TTATGTAAGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
** * *
17895548 ATGTAAGTTATCAAAGTAATGTATGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
*
17895575 ATGTAAG-T-TGTAAGTTAT-TAAG-TATT
1 ATGTAAGTTATGTAAGTTATGTAAGTTA-A
17895601 ATGTAAGTTATGTAAGTTATGTAAGTTAA
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
*
17895630 ATGT-A-TTATGTAGGTTATGTAAGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
* * *
17895655 GTGTAAGATATTTAAGTTATGTAAGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
*
17895682 TTGT-A-TTATGTAAGTTATGTAAGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
** *
17895707 ATGTAAGTTAAATATA-TTATGTAGGTT--
1 ATGTAAGTTATGTA-AGTTATGTAAGTTAA
* * *
17895734 ATGTAAGTTGTGTAAAGATATTTAAGTT--
1 ATGTAAGTTATGT-AAGTTATGTAAGTTAA
*
17895762 ATGTAAGTTTTGT-A-TTATGTAAGTT--
1 ATGTAAGTTATGTAAGTTATGTAAGTTAA
* * **
17895787 ATGTATGCTATGT-A-TTATGTAAGTTGTT
1 ATGTAAGTTATGTAAGTTATGTAAGTT-AA
* * * *
17895815 ATGTTA-TTACGTAAGTTATGCAAGTTTAT
1 ATGTAAGTTATGTAAGTTATGTAAG-TTAA
* * *
17895844 ATATAAGCTTGTAGATAACTTATGTAAGTTAA
1 ATGTAAG-TTAT-G-TAAGTTATGTAAGTTAA
*
17895876 TATGTAAGTAATGT-A-TTATGTAAGTT
1 -ATGTAAGTTATGTAAGTTATGTAAGTT
17895902 TATATAAAAA
Statistics
Matches: 319, Mismatches: 56, Indels: 56
0.74 0.13 0.13
Matches are distributed among these distances:
23 5 0.02
24 5 0.02
25 95 0.30
26 26 0.08
27 86 0.27
28 49 0.15
29 22 0.07
30 5 0.02
31 3 0.01
32 6 0.02
33 17 0.05
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (29 bp):
ATGTAAGTTATGTAAGTTATGTAAGTTAA
Found at i:17895830 original size:159 final size:154
Alignment explanation
Indices: 17895469--17895841 Score: 389
Period size: 150 Copynumber: 2.4 Consensus size: 154
17895459 TATTAAGTAA
*
17895469 ATTATGTAAGTTATGTACGTGTATGTATTATGTAA---GTTATGTATTAAGTAAGCTATGTAAGT
1 ATTATGTAAGTTATGTA--TGTATGTATTATGTAAGTTGTTATGTATT-AGTAAGTTATGTAAGT
* * *
17895531 TGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGTTGTAAGTTATTAA
63 TTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATATATATTATGTAAGTTGTAAGTTATTAA
17895596 GTATTATGTAAGTTATGTAAGTTATGT
128 GTATTATGTAAGTTATGTAAGTTATGT
*
17895623 A--A-GTTAA---ATGTAT-TATGTAGGTTATGTAAGTTGTGTAAGATATT--TAAGTTATGTAA
1 ATTATG-TAAGTTATGTATGTATGTA--TTATGTAAGTTGT-TATG-TATTAGTAAGTTATGTAA
** *
17895679 GTTTTGTATTATGTAAGTTATGTAAGTTATGTAAGTTAA-ATATATTATGTAGGTTATGTAAGTT
61 GTTTTGTATTATGTAAGTTATGTAAGTTATCAAAG-TAATATATATTATGTAAG-T-TGTAAGTT
* * *
17895743 GTGTAAAG-A-TATTTAAGTTATGTAAGTTTTGT
123 AT-T-AAGTATTATGTAAGTTATGTAAGTTATGT
*
17895775 ATTATGTAAGTTATGTATGCTATGTATTATGTAAGTTGTTATGTTATTACGTAAGTTATGCAAGT
1 ATTATGTAAGTTATGTATG-TATGTATTATGTAAGTTGTTATG-TATTA-GTAAGTTATGTAAGT
17895840 TT
63 TT
17895842 ATATATAAGC
Statistics
Matches: 181, Mismatches: 14, Indels: 43
0.76 0.06 0.18
Matches are distributed among these distances:
146 6 0.03
147 1 0.01
148 8 0.04
149 5 0.03
150 54 0.30
151 7 0.04
152 38 0.21
153 6 0.03
154 8 0.04
155 1 0.01
156 7 0.04
157 19 0.10
159 21 0.12
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.46
Consensus pattern (154 bp):
ATTATGTAAGTTATGTATGTATGTATTATGTAAGTTGTTATGTATTAGTAAGTTATGTAAGTTTT
GTATTATGTAAGTTATGTAAGTTATCAAAGTAATATATATTATGTAAGTTGTAAGTTATTAAGTA
TTATGTAAGTTATGTAAGTTATGT
Found at i:17896163 original size:13 final size:13
Alignment explanation
Indices: 17896145--17896239 Score: 84
Period size: 13 Copynumber: 7.2 Consensus size: 13
17896135 TAAATTTTAG
*
17896145 TAAGTAATGTATT
1 TAAGTAATATATT
*
17896158 TAAGTAACATATT
1 TAAGTAATATATT
*
17896171 TAAGTAATAAATT
1 TAAGTAATATATT
** *
17896184 TAAACAA-ATTTT
1 TAAGTAATATATT
*
17896196 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
17896211 TAAGTAACATATT
1 TAAGTAATATATT
*
17896224 TAAGTAATAAATT
1 TAAGTAATATATT
17896237 TAA
1 TAA
17896240 CCAAATTTTA
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
12 3 0.05
13 52 0.83
14 5 0.08
15 3 0.05
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.40
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:17896201 original size:53 final size:53
Alignment explanation
Indices: 17896136--17896263 Score: 247
Period size: 53 Copynumber: 2.4 Consensus size: 53
17896126 ATATATACTT
17896136 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
*
17896189 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
17896242 AAATTTTAGTAAGTAATGTATT
1 AAATTTTAGTAAGTAATGTATT
17896264 AAATTGTAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 74 1.00
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (53 bp):
AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
Found at i:17896237 original size:26 final size:26
Alignment explanation
Indices: 17896145--17896239 Score: 102
Period size: 26 Copynumber: 3.6 Consensus size: 26
17896135 TAAATTTTAG
**
17896145 TAAGTAATGTATTTAAGTAACATATT
1 TAAGTAATAAATTTAAGTAACATATT
** *
17896171 TAAGTAATAAATTTAAACAA-ATTTT
1 TAAGTAATAAATTTAAGTAACATATT
**
17896196 AGTAAGTAATGTATTTAAGTAACATATT
1 --TAAGTAATAAATTTAAGTAACATATT
17896224 TAAGTAATAAATTTAA
1 TAAGTAATAAATTTAA
17896240 CCAAATTTTA
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
25 4 0.07
26 30 0.56
27 16 0.30
28 4 0.07
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.40
Consensus pattern (26 bp):
TAAGTAATAAATTTAAGTAACATATT
Found at i:17898383 original size:147 final size:146
Alignment explanation
Indices: 17898073--17898383 Score: 367
Period size: 146 Copynumber: 2.1 Consensus size: 146
17898063 GTTTATAAAT
* * * *
17898073 AAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAAATAGCTCACACCTCTGGCGT
1 AAGCGCCACTAACTATAAATCAAAACGCAGTCGCTTCATCAACAAATACCTCAAACCTCTGGCGT
* * * * *
17898138 TTTTGAATAAACGCCACTAATAATACAGCAAAACGGCCTCGTATCAATAAATGTTAAAACATTTT
66 TTTTCAAAAAACGCCACGAATAATACAGCAAAACGGCATCGTATCAATAAATGTTAAAACAATTT
* *
17898203 TGTGGCGTTTAAAGTG
131 TGAGGCGTTTAAAGTA
* * **
17898219 AAGCGCCACTAACTATAAATCAAAACGTAGTTGCTTCATCAACACTTACCTCAAACC-CGTGGCG
1 AAGCGCCACTAACTATAAATCAAAACGCAGTCGCTTCATCAACAAATACCTCAAACCTC-TGGCG
** * * *
17898283 -TTTTCAAAAAATCGCCACGAATAACATTTA-CAAAACGGCATCGTTTCTATAAATGTTAGAACA
65 TTTTTCAAAAAA-CGCCACGAAT-A-ATACAGCAAAACGGCATCGTATCAATAAATGTTAAAACA
*
17898346 ATTTTGAGGCGTTTTAAGTA
127 ATTTTGAGGCGTTTAAAGTA
*
17898366 AAGCGCCACTAAATATAA
1 AAGCGCCACTAACTATAA
17898384 GTTCAAACGA
Statistics
Matches: 139, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
145 10 0.07
146 63 0.45
147 63 0.45
148 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (146 bp):
AAGCGCCACTAACTATAAATCAAAACGCAGTCGCTTCATCAACAAATACCTCAAACCTCTGGCGT
TTTTCAAAAAACGCCACGAATAATACAGCAAAACGGCATCGTATCAATAAATGTTAAAACAATTT
TGAGGCGTTTAAAGTA
Found at i:17898482 original size:147 final size:143
Alignment explanation
Indices: 17898073--17898519 Score: 384
Period size: 147 Copynumber: 3.1 Consensus size: 143
17898063 GTTTATAAAT
* * * *
17898073 AAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAAATAGCTCACACCTCTGGCGT
1 AAGCGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATTAACTCA-ACCTGTGGCGT
* * * *
17898138 TTTTGAATAAACGCCACTAATA-ATACAGCAAAACGGCCT-CGTATCAATAAATGTTAAAACATT
65 TTCTGAA-AAACGCCACTAATACATACA-CAAAAC-GACTACGTTTCAATAAATGTT-AAACAAT
* * *
17898201 TTTGTGGCGTTTAAAGTG
126 TTTGAGGCGTTTTAAGTA
* * * * * * *
17898219 AAGCGCCACTAACTATAAATCAAAACGTAGTTGCTTCATCAACACTTACCTCAAACCCGTGGCGT
1 AAGCGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATTAACTC-AACCTGTGGCGT
* * ** * *
17898284 TT-TCAAAAAATCGCCACGAATAACATTTACAAAACGGC-ATCGTTTCTATAAATGTTAGAACAA
65 TTCT-GAAAAA-CGCCACTAAT-ACATACACAAAACGACTA-CGTTTCAATAAATGTTA-AACAA
17898347 TTTTGAGGCGTTTTAAGTA
125 TTTTGAGGCGTTTTAAGTA
* ** * *
17898366 AAGCGCCACTAAATATAAGTTC-AAACGAAGTCGTTTCCCCAACAGTTAACTCAAGCTTGTGGCG
1 AAGCGCCACTAACTATAAG-TCAAAACGAAGTCGTTTCATCAACAATTAACTCAA-CCTGTGGCG
* * * * *
17898430 TTTCCTGAAAAACGCCACTAATACCATAGACAAAACGACTACATTTCAATAAAGGTCATACAATT
64 TTT-CTGAAAAACGCCACTAATA-CATACACAAAACGACTACGTTTCAATAAATGTTAAACAATT
* *
17898495 TTGCGGCGTTTCT-TGTA
127 TTGAGGCGTTT-TAAGTA
17898512 AAGCGCCA
1 AAGCGCCA
17898520 TTAATAGCAG
Statistics
Matches: 243, Mismatches: 43, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
145 4 0.02
146 100 0.41
147 127 0.52
148 11 0.05
149 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (143 bp):
AAGCGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATTAACTCAACCTGTGGCGTT
TCTGAAAAACGCCACTAATACATACACAAAACGACTACGTTTCAATAAATGTTAAACAATTTTGA
GGCGTTTTAAGTA
Found at i:17900207 original size:114 final size:114
Alignment explanation
Indices: 17899909--17900350 Score: 559
Period size: 114 Copynumber: 3.9 Consensus size: 114
17899899 TAATTATTTT
* * *
17899909 GCGGCGCTTCACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTCACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTCG
* * *
17899974 GTTTTTTTGCGGCGCTTTCACAAAAAACGCCGCTAAAGCCCTGAGCATTA
66 GTTTCTTTGCGGCGCTTACAC-AAAAACGCCGCTAAAGTCCTGAGCATTA
* * * * * *
17900024 GCGGCGTTTCCCCCGAAAACGCCGCTAAATCCCC----CCTCAGAAAACAGTGTCGTTAGGCTTC
1 GCGGCGCTT-CACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTC
* * * *
17900085 AGTTTCTTTGCGGCGATTACTCAAAAACGTCGCTAAAGTCCTGAGCATTA
65 GGTTTCTTTGCGGCGCTTACACAAAAACGCCGCTAAAGTCCTGAGCATTA
*
17900135 GCGGCGCTTCACCAAAAACGCCACTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTCG
1 GCGGCGCTTCACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTCG
* * * *
17900200 GTTTCTTTGCAGCGCTTACCCAAAAATGCCGCTAAAGTCCTGAGCAGTA
66 GTTTCTTTGCGGCGCTTACACAAAAACGCCGCTAAAGTCCTGAGCATTA
* * * * * *
17900249 GTGGCGCTTCACCAAAAACACCGCTAAATCCCCGAATACTCAGAAAACGGTGTCATTGGGCTTCG
1 GCGGCGCTTCACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTCG
* * * *
17900314 ATTGCTTTGCGGCGCTTCCACAAAATCGCCGCTAAAG
66 GTTTCTTTGCGGCGCTTACACAAAAACGCCGCTAAAG
17900351 CCCCGAATGG
Statistics
Matches: 278, Mismatches: 44, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
110 21 0.08
111 34 0.12
112 38 0.14
114 155 0.56
115 8 0.03
116 22 0.08
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (114 bp):
GCGGCGCTTCACCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTCG
GTTTCTTTGCGGCGCTTACACAAAAACGCCGCTAAAGTCCTGAGCATTA
Found at i:17900370 original size:73 final size:71
Alignment explanation
Indices: 17900251--17900401 Score: 169
Period size: 73 Copynumber: 2.1 Consensus size: 71
17900241 GAGCAGTAGT
* * * *
17900251 GGCGCTTCACCAAAAACACCGCTAAATCCCCGAATACTCAGAAAACGGTGTCATTGGGCTTCGAT
1 GGCGCTTCACCAAAAACACCGCTAAAGCCCCGAATACGCAGAAAACGGCGTCATTGGGCTTAGAT
17900316 TGCTTTGC
66 T--TTTGC
* * ** * * *
17900324 GGCGCTTC-CACAAAATCGCCGCTAAAGCCCCGAATGGGCGGAAAACGGCGTCGTTGGGCTTAGG
1 GGCGCTTCAC-CAAAAACACCGCTAAAGCCCCGAATACGCAGAAAACGGCGTCATTGGGCTTAGA
17900388 TTTTTGC
65 TTTTTGC
17900395 GGCGCTT
1 GGCGCTT
17900402 TATGGAAAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
71 12 0.18
72 1 0.02
73 53 0.80
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (71 bp):
GGCGCTTCACCAAAAACACCGCTAAAGCCCCGAATACGCAGAAAACGGCGTCATTGGGCTTAGAT
TTTTGC
Found at i:17901285 original size:43 final size:43
Alignment explanation
Indices: 17901231--17901352 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
17901221 CTCATACAAT
* * * * *
17901231 GCCAACATCCCAGACGTGGTCTTACATGTAATCACATACCGAT
1 GCCAATATCCCAGACGTGGTCTTACACGTAAACACAGACCGAC
* * **
17901274 GTCACTATCCCAGACAG-GGTCTTACACGTAAACACAGGTCGAC
1 GCCAATATCCCAGAC-GTGGTCTTACACGTAAACACAGACCGAC
* *
17901317 GCCAATGTCCCAGACGTGGTCTTACACGAAAACACA
1 GCCAATATCCCAGACGTGGTCTTACACGTAAACACA
17901353 TATCGGAATC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 1 0.02
43 62 0.97
44 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (43 bp):
GCCAATATCCCAGACGTGGTCTTACACGTAAACACAGACCGAC
Found at i:17902272 original size:28 final size:28
Alignment explanation
Indices: 17902232--17902288 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
17902222 TCTCCTTTTT
17902232 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
17902260 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
17902288 T
1 T
17902289 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:17903668 original size:13 final size:13
Alignment explanation
Indices: 17903647--17903684 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
17903637 TTTATTATGG
*
17903647 TTTTGATTTAATC
1 TTTTCATTTAATC
17903660 TTTTCATTTAATC
1 TTTTCATTTAATC
*
17903673 TTTTTATTTAAT
1 TTTTCATTTAAT
17903685 TTTCAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (13 bp):
TTTTCATTTAATC
Found at i:17903798 original size:13 final size:13
Alignment explanation
Indices: 17903780--17903804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17903770 ATTTTACTTC
17903780 TTTTTTATGTTGT
1 TTTTTTATGTTGT
17903793 TTTTTTATGTTG
1 TTTTTTATGTTG
17903805 ATGTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (13 bp):
TTTTTTATGTTGT
Found at i:17906540 original size:17 final size:17
Alignment explanation
Indices: 17906520--17906561 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
17906510 TTTTGTAGAT
17906520 ATTAATATTTATTTTAA
1 ATTAATATTTATTTTAA
* *
17906537 ATTAATGTTTTTTTTAA
1 ATTAATATTTATTTTAA
*
17906554 ATAAATAT
1 ATTAATAT
17906562 AATTAATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTAATATTTATTTTAA
Found at i:17911502 original size:5 final size:5
Alignment explanation
Indices: 17911486--17911515 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
17911476 TTTTTATAAT
17911486 TATTA TATTTA TATTA TATTA TATTA TATT
1 TATTA TA-TTA TATTA TATTA TATTA TATT
17911516 TAATTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TATTA
Found at i:17913691 original size:64 final size:64
Alignment explanation
Indices: 17913585--17913779 Score: 212
Period size: 64 Copynumber: 3.0 Consensus size: 64
17913575 TCGGCACATG
*
17913585 CCCGTGTCCCCTACCCGTGTGACTCCAAGTCTAAACTCAGGGAGTTACACAACCTAGACACACA
1 CCCGTGTGCCCTACCCGTGTGACTCCAAGTCTAAACTCAGGGAGTTACACAACCTAGACACACA
* * * * * *
17913649 CCCGTGTGCCCTACCCGTGTGACTCCAAGTCTTAACTTAGGGAGTTACACGACCTGGATACACG
1 CCCGTGTGCCCTACCCGTGTGACTCCAAGTCTAAACTCAGGGAGTTACACAACCTAGACACACA
* * ** * * * * ***
17913713 CCCGTGTGACTTACTTGTGTGACCTCAAATTC-GAACTCAGAGAGTTACACGGTCTAGACACACA
1 CCCGTGTGCCCTACCCGTGTGA-CTCCAAGTCTAAACTCAGGGAGTTACACAACCTAGACACACA
17913777 CCC
1 CCC
17913780 ATGTTTCTTT
Statistics
Matches: 109, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
64 102 0.94
65 7 0.06
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (64 bp):
CCCGTGTGCCCTACCCGTGTGACTCCAAGTCTAAACTCAGGGAGTTACACAACCTAGACACACA
Found at i:17919203 original size:9 final size:9
Alignment explanation
Indices: 17919189--17919213 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
17919179 GACTAAAATG
17919189 TGAAATAAA
1 TGAAATAAA
17919198 TGAAATAAA
1 TGAAATAAA
17919207 TGAAATA
1 TGAAATA
17919214 TGTGGACTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:17920624 original size:122 final size:123
Alignment explanation
Indices: 17920391--17920660 Score: 420
Period size: 122 Copynumber: 2.2 Consensus size: 123
17920381 AAGTAAGATG
* * * * *
17920391 ATTT-AGACTTTACATCTTGCAGGCTTGATGCTGGTGAAATGTTTCAGACTTTACGTCTAGCAGG
1 ATTTCAGACTTTACGTCTAGCAGGCTTGATGCCGCTGAAATATTTCAGACTTTACGTCTAGCAGG
17920455 CTTGATGCCAGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAAT
66 CTTGATGCCAGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAAT
*
17920513 GTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGCTGAAATATTTC-GAACTTTACGTCTAGCAG
1 ATTTCAGACTTTACGTCTAGCAGGCTTGATGCCGCTGAAATATTTCAG-ACTTTACGTCTAGCAG
* *
17920577 G-TTGATGCCGGTGAAATGTTTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAAT
65 GCTTGATGCCAGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAAT
* *
17920635 ATTTCAGACTTTATGTCTAACAGGCT
1 ATTTCAGACTTTACGTCTAGCAGGCT
17920661 AATTGTCGGT
Statistics
Matches: 135, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
122 82 0.61
123 53 0.39
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (123 bp):
ATTTCAGACTTTACGTCTAGCAGGCTTGATGCCGCTGAAATATTTCAGACTTTACGTCTAGCAGG
CTTGATGCCAGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAAT
Found at i:17920671 original size:41 final size:41
Alignment explanation
Indices: 17920395--17920660 Score: 419
Period size: 41 Copynumber: 6.5 Consensus size: 41
17920385 AAGATGATTT
* * *
17920395 AGACTTTACATCTTGCAGGCTTGATGCTGGTGAAATGTTTC
1 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
*
17920436 AGACTTTACGTCTAGCAGGCTTGATGCCAGTGAAATGTTTC
1 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
17920477 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
1 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
* *
17920518 AGACTTTACGTCTAGCAGGCTTGATGCCGCTGAAATATTTC
1 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
17920559 -GAACTTTACGTCTAGCAGG-TTGATGCCGGTGAAATGTTTC
1 AG-ACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
* *
17920599 AGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATATTTC
1 AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
* *
17920640 AGACTTTATGTCTAACAGGCT
1 AGACTTTACGTCTAGCAGGCT
17920661 AATTGTCGGT
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
40 36 0.17
41 174 0.83
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (41 bp):
AGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTC
Found at i:17920698 original size:163 final size:164
Alignment explanation
Indices: 17920397--17920701 Score: 425
Period size: 163 Copynumber: 1.9 Consensus size: 164
17920387 GATGATTTAG
* *
17920397 ACTTTACATCTTGCAGGCTTGATGCTGGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATG
1 ACTTTACATCTAGCAGGCTTGATGCCGGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATG
* * * ** *
17920462 CCAGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGTTTCAGACTTTAC
66 CCAGTGAAATATTTCAGACTTTACGTCTAACAGGCTTAATGCCGGTGAAATGAATCAGACTTTAA
*
17920527 GTCTAGCAGGCTTGATGCCGCTGAAATATTTCGA
131 GCCTAGCAGGCTTGATGCCGCTGAAATATTTCGA
* *
17920561 ACTTTACGTCTAGCAGG-TTGATGCCGGTGAAATGTTTCAGACTTTATGTCTAGCAGGCTTGATG
1 ACTTTACATCTAGCAGGCTTGATGCCGGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATG
* * * * * **
17920625 CCGGTGAAATATTTCAGACTTTATGTCTAACAGGC-TAATTGTCGGTGTACTGAATCAGGTTTTA
66 CCAGTGAAATATTTCAGACTTTACGTCTAACAGGCTTAA-TGCCGGTGAAATGAATCAGACTTTA
17920689 AGCCTAGCAGGCT
130 AGCCTAGCAGGCT
17920702 AAGCACCGGT
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
162 2 0.02
163 105 0.86
164 15 0.12
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (164 bp):
ACTTTACATCTAGCAGGCTTGATGCCGGTGAAATGTTTCAGACTTTACGTCTAGCAGGCTTGATG
CCAGTGAAATATTTCAGACTTTACGTCTAACAGGCTTAATGCCGGTGAAATGAATCAGACTTTAA
GCCTAGCAGGCTTGATGCCGCTGAAATATTTCGA
Found at i:17921190 original size:71 final size:70
Alignment explanation
Indices: 17921114--17921270 Score: 208
Period size: 71 Copynumber: 2.2 Consensus size: 70
17921104 GATAATTACA
*
17921114 TATATACATTTGGTTATAATATTTGTTAAG-TATATGTATATATATGCATTCGGCTATTCATGTT
1 TATATACATTTGGTTATAATATCTGTTAAGATATATGTATATA-A-GCATTCGGCTATTCATGTT
17921178 CAAAGTG
64 CAAAGTG
*** *
17921185 TATATACATTTGGAGCTAATATCTGTTAAGCATATATGTATATAAGCATTCGGCTATTCATGTTT
1 TATATACATTTGGTTATAATATCTGTTAAG-ATATATGTATATAAGCATTCGGCTATTCATGTTC
*
17921250 ATAGTG
65 AAAGTG
* *
17921256 AATATACATTCGGTT
1 TATATACATTTGGTT
17921271 TTAAGAGTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
71 61 0.82
72 1 0.01
73 12 0.16
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (70 bp):
TATATACATTTGGTTATAATATCTGTTAAGATATATGTATATAAGCATTCGGCTATTCATGTTCA
AAGTG
Found at i:17922346 original size:15 final size:16
Alignment explanation
Indices: 17922326--17922355 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17922316 GTTATGATAT
17922326 ATGAAA-TTTTTAAGA
1 ATGAAAGTTTTTAAGA
17922341 ATGAAAGTTTTTAAG
1 ATGAAAGTTTTTAAG
17922356 TTACAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (16 bp):
ATGAAAGTTTTTAAGA
Found at i:17923010 original size:60 final size:60
Alignment explanation
Indices: 17922912--17923049 Score: 197
Period size: 60 Copynumber: 2.3 Consensus size: 60
17922902 AGCAAGGCTA
* * * *
17922912 CAAACCCAACTCACAAGAACCTTGCGCGAGCTCATAAGGTAGGATCCCAGGTACAGCTCG
1 CAAAGCCAACTCACAAGAACCTTACGCGAGCTCATAAGGCAGGATCCCAGGCACAGCTCG
* *
17922972 CAGAGCCAACTCACAAGAACCTTACGCGAGCTCATAAGGCAGGATCGCAGGCACAGCTCG
1 CAAAGCCAACTCACAAGAACCTTACGCGAGCTCATAAGGCAGGATCCCAGGCACAGCTCG
*
17923032 TAAAG-CAAGCTCACAAGA
1 CAAAGCCAA-CTCACAAGA
17923050 TAAGGTTACA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 3 0.04
60 66 0.96
ACGTcount: A:0.34, C:0.30, G:0.22, T:0.13
Consensus pattern (60 bp):
CAAAGCCAACTCACAAGAACCTTACGCGAGCTCATAAGGCAGGATCCCAGGCACAGCTCG
Found at i:17938039 original size:105 final size:104
Alignment explanation
Indices: 17937602--17938060 Score: 429
Period size: 105 Copynumber: 4.4 Consensus size: 104
17937592 CAGAGTGTTG
* * * * *
17937602 TATGTGACAACATCAGGCTAAATGCCTTGCTTTCTCATTCTGCCAAAAATATCTTCAGCTTCAGA
1 TATGTGACAACATTAGGCTTAATGCCTTGCTTTCTCATTATGCCAACAATAACTTCAGCTTCAGA
* * * * *
17937667 AACCATACTATTCTTGCAAAGTGAATCCATCAATATATTA
66 AACCATTC-CTTCTTGCAAAGCGAATCGATCAATATACTA
* * ** ** * *
17937707 TACGTGATAACATTAGG-TTCAGCGCCTTGCTTTCTCATCGTGCAAACAATAAATTCAGCTTCAG
1 TATGTGACAACATTAGGCTT-AATGCCTTGCTTTCTCATTATGCCAACAATAACTTCAGCTTCAG
* * *
17937771 AAACCATACCATTCTTGCAAAGCGAATCTATCAATGTACTA
65 AAACCATTCC-TTCTTGCAAAGCGAATCGATCAATATACTA
** * * * * * * *
17937812 TACATGACAACATTAGG-TTCGATGCCTTGCTTTCTCATCACGTCAACAACAACTTCGGCTTTAG
1 TATGTGACAACATTAGGCTT-AATGCCTTGCTTTCTCATTATGCCAACAATAACTTCAGCTTCAG
* * * * * *
17937876 AAACC-TCCCCCATCTTGCAAAGAGTATCGATGAATATACCA
65 AAACCAT--TCCTTCTTGCAAAGCGAATCGATCAATATACTA
* * * *
17937917 TATGTGACAACATTAGGCTTAATGCCTTGCTTTGTCATTATGCCAACAATATCTTCGGCTTTAGA
1 TATGTGACAACATTAGGCTTAATGCCTTGCTTTCTCATTATGCCAACAATAACTTCAGCTTCAGA
* * *
17937982 TATCATTCCTTGCTTGCAAAGCGCATCGATCAATATACTA
66 AACCATTCCTT-CTTGCAAAGCGAATCGATCAATATACTA
* *
17938022 TATGTGACGACATTAGGCTTAATGCCTTGCTTTATCATT
1 TATGTGACAACATTAGGCTTAATGCCTTGCTTTCTCATT
17938061 TCGAAGAAGA
Statistics
Matches: 290, Mismatches: 57, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
104 5 0.02
105 280 0.97
106 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (104 bp):
TATGTGACAACATTAGGCTTAATGCCTTGCTTTCTCATTATGCCAACAATAACTTCAGCTTCAGA
AACCATTCCTTCTTGCAAAGCGAATCGATCAATATACTA
Found at i:17940702 original size:24 final size:24
Alignment explanation
Indices: 17940668--17940717 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
17940658 CAAAAAAAAG
*
17940668 AAAAAGCAGTCCAAAATCAATAGA
1 AAAAAGCAGTCCAAAAGCAATAGA
*
17940692 AAAAAGTAGTCCAAAAGCAATAGA
1 AAAAAGCAGTCCAAAAGCAATAGA
17940716 AA
1 AA
17940718 TATATGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.60, C:0.14, G:0.14, T:0.12
Consensus pattern (24 bp):
AAAAAGCAGTCCAAAAGCAATAGA
Found at i:17941448 original size:21 final size:21
Alignment explanation
Indices: 17941419--17941531 Score: 109
Period size: 21 Copynumber: 5.4 Consensus size: 21
17941409 TTTGACGCTG
17941419 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* **
17941440 CTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
17941461 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
17941482 CTGTTCTTCTCTCACTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
17941503 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
17941524 ATCTGCTT
1 CTCTGCTT
17941532 TAAGCTGCTG
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 74 1.00
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:17941505 original size:42 final size:42
Alignment explanation
Indices: 17941419--17941520 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
17941409 TTTGACGCTG
* * **
17941419 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTTGCTGCAGCCTCTACTTCCCTCACTGCAGC
* * * *
17941461 CTCTGCTTCCCTTGCTGCAGCCTGTTCTTCTCTCACTGCCGC
1 CTCTGCTTCCCTTGCTGCAGCCTCTACTTCCCTCACTGCAGC
*
17941503 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTTGCTGC
17941521 CGCATCTGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.05, C:0.43, G:0.16, T:0.36
Consensus pattern (42 bp):
CTCTGCTTCCCTTGCTGCAGCCTCTACTTCCCTCACTGCAGC
Found at i:17941592 original size:66 final size:66
Alignment explanation
Indices: 17941502--17941667 Score: 210
Period size: 66 Copynumber: 2.5 Consensus size: 66
17941492 CTCACTGCCG
* * *
17941502 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
17941565 GAA
64 GAA
* *
17941568 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
17941633 A
66 A
* * * * *
17941634 CATCAGCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAG
17941668 TTGTGTAATT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 83 0.94
67 4 0.05
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:17947089 original size:16 final size:16
Alignment explanation
Indices: 17947068--17947101 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
17947058 ATAGTTAAGC
17947068 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
17947084 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
17947100 TA
1 TA
17947102 CCCAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:17947133 original size:25 final size:25
Alignment explanation
Indices: 17947082--17947137 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
17947072 TAAGTTATGT
* *
17947082 ATTATGTAAGTTATTTATTACCCAA
1 ATTATGTAAGTTATGTATTACCAAA
* **
17947107 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATGTATTACCAAA
17947132 ATTATG
1 ATTATG
17947138 CTATGTAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTACCAAA
Found at i:17947151 original size:9 final size:9
Alignment explanation
Indices: 17947139--17947336 Score: 60
Period size: 9 Copynumber: 22.7 Consensus size: 9
17947129 AAAATTATGC
17947139 TATGTAAGT
1 TATGTAAGT
17947148 TATGTAAGT
1 TATGTAAGT
* **
17947157 CACATAAGT
1 TATGTAAGT
17947166 TATGTAAG-
1 TATGTAAGT
* * *
17947174 -AAGTTATT
1 TATGTAAGT
17947182 TATGTAAGT
1 TATGTAAGT
*
17947191 TAT-TTA-T
1 TATGTAAGT
* *
17947198 TATGAAAAT
1 TATGTAAGT
*
17947207 TAAGTAAGT
1 TATGTAAGT
*
17947216 TATGTAATT
1 TATGTAAGT
*
17947225 TACG-AA-T
1 TATGTAAGT
* **
17947232 AAT-TAAAAA
1 TATGT-AAGT
17947241 TATGTAAGT
1 TATGTAAGT
17947250 TATGTAAG-
1 TATGTAAGT
17947258 T-TGTAAGT
1 TATGTAAGT
*
17947266 TATGTATA-A
1 TATGTA-AGT
17947275 TAT-TAA-T
1 TATGTAAGT
**
17947282 TAACTAAGT
1 TATGTAAGT
* *
17947291 TATGTCATT
1 TATGTAAGT
*
17947300 TATGTATCATAT
1 TATGTA--A-GT
17947312 TAATGTAAGT
1 T-ATGTAAGT
*
17947322 TATGTAATT
1 TATGTAAGT
17947331 TATGTA
1 TATGTA
17947337 TATTAACTAA
Statistics
Matches: 134, Mismatches: 38, Indels: 34
0.65 0.18 0.17
Matches are distributed among these distances:
7 19 0.14
8 14 0.10
9 88 0.66
10 4 0.03
11 2 0.01
12 2 0.01
13 5 0.04
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.43
Consensus pattern (9 bp):
TATGTAAGT
Found at i:17947219 original size:34 final size:34
Alignment explanation
Indices: 17947181--17947259 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
17947171 AAGAAGTTAT
*** * *
17947181 TTATGTAAGTTATTTATTATGAAAATTAAGTAAG
1 TTATGTAAGTTACGAATAATGAAAAATAAGTAAG
* * *
17947215 TTATGTAATTTACGAATAATTAAAAATATGTAAG
1 TTATGTAAGTTACGAATAATGAAAAATAAGTAAG
17947249 TTATGTAAGTT
1 TTATGTAAGTT
17947260 GTAAGTTATG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.43
Consensus pattern (34 bp):
TTATGTAAGTTACGAATAATGAAAAATAAGTAAG
Found at i:17947303 original size:34 final size:34
Alignment explanation
Indices: 17947259--17947411 Score: 183
Period size: 34 Copynumber: 4.7 Consensus size: 34
17947249 TTATGTAAGT
* *
17947259 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
* * *
17947293 TGTCATTTATGTATCATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
* *
17947324 TGTAATTTATG--T-ATATTAACTAATTAATTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
*
17947355 TGTAAGTTATGTATAATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAATTAAGTTA
*
17947389 TGTCATTTATGTATAATATTAAT
1 TGTAATTTATGTATAATATTAAT
17947412 GTAAGTTATG
Statistics
Matches: 101, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
28 7 0.07
29 2 0.02
31 33 0.33
33 2 0.02
34 57 0.56
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.48
Consensus pattern (34 bp):
TGTAATTTATGTATAATATTAATTAATTAAGTTA
Found at i:17947324 original size:31 final size:31
Alignment explanation
Indices: 17947265--17947478 Score: 208
Period size: 31 Copynumber: 6.9 Consensus size: 31
17947255 AAGTTGTAAG
*
17947265 TTATGTATAATATTAATTAACTAAGTTATGTCAT
1 TTATGTATAATATTAA-T--GTAAGTTATGTCAT
* *
17947299 TTATGTATCATATTAATGTAAGTTATGTAAT
1 TTATGTATAATATTAATGTAAGTTATGTCAT
* * * * *
17947330 TTATGTATATTAACTAAT-TAATTTATGTAAG
1 TTATGTATAAT-ATTAATGTAAGTTATGTCAT
*
17947361 TTATGTATAATATTAATTAATTAAGTTATGTCAT
1 TTATGTATAATATTAA-T--GTAAGTTATGTCAT
17947395 TTATGTATAATATTAATGTAAGTTATGT-A-
1 TTATGTATAATATTAATGTAAGTTATGTCAT
* *
17947424 -TA-ATATTA-ATTAAT-TAAGTTATGTCAT
1 TTATGTATAATATTAATGTAAGTTATGTCAT
*
17947451 CTATGTATAATATTAATGTAAGTTATGT
1 TTATGTATAATATTAATGTAAGTTATGT
17947479 ATAATATTAA
Statistics
Matches: 151, Mismatches: 18, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
25 10 0.07
26 7 0.05
27 4 0.03
28 4 0.03
29 4 0.03
30 11 0.07
31 63 0.42
32 5 0.03
33 2 0.01
34 41 0.27
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.48
Consensus pattern (31 bp):
TTATGTATAATATTAATGTAAGTTATGTCAT
Found at i:17947415 original size:56 final size:56
Alignment explanation
Indices: 17947354--17947504 Score: 293
Period size: 56 Copynumber: 2.7 Consensus size: 56
17947344 TAATTAATTT
*
17947354 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATCTATGTATAATATTA
17947410 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATCTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATCTATGTATAATATTA
17947466 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTC
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTC
17947505 CCTTACAATA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 94 1.00
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (56 bp):
ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTCATCTATGTATAATATTA
Found at i:17947628 original size:24 final size:24
Alignment explanation
Indices: 17947596--17947648 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
17947586 AGTATTTTAT
17947596 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
17947620 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
17947644 AATAT
1 AATAT
17947649 TATACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:17949137 original size:17 final size:17
Alignment explanation
Indices: 17949117--17949154 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
17949107 TTAAAGTTCA
17949117 CAAGGAAGTAAAGGCTG
1 CAAGGAAGTAAAGGCTG
*
17949134 CAAGGAAGTAGAGGCTG
1 CAAGGAAGTAAAGGCTG
17949151 CAAG
1 CAAG
17949155 TTCCTGGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.39, C:0.13, G:0.37, T:0.11
Consensus pattern (17 bp):
CAAGGAAGTAAAGGCTG
Found at i:17949441 original size:33 final size:33
Alignment explanation
Indices: 17949394--17949461 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
17949384 ATATACATAT
*
17949394 ATTCATACCTAACACTAATCTCATTTAACTCGA
1 ATTCATACCCAACACTAATCTCATTTAACTCGA
*
17949427 ATTCATACCCAACACTCATCTCATTTAACTCGA
1 ATTCATACCCAACACTAATCTCATTTAACTCGA
17949460 AT
1 AT
17949462 AACATAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.32
Consensus pattern (33 bp):
ATTCATACCCAACACTAATCTCATTTAACTCGA
Found at i:17949702 original size:14 final size:15
Alignment explanation
Indices: 17949683--17949721 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
17949673 AATTGGGAAA
17949683 TTGGGGAAAAT-ACT
1 TTGGGGAAAATAACT
17949697 TTGGGGAAGAATAACT
1 TTGGGGAA-AATAACT
*
17949713 TGGGGGAAA
1 TTGGGGAAA
17949722 TTGGGGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 8 0.36
15 4 0.18
16 10 0.45
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.23
Consensus pattern (15 bp):
TTGGGGAAAATAACT
Found at i:17949726 original size:25 final size:22
Alignment explanation
Indices: 17949697--17949753 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
17949687 GGAAAATACT
*
17949697 TTGGGGAAGAATAACTTGGGGGAAA
1 TTGGGGAA-AAGAACTT--GGGAAA
*
17949722 TTGGGGGAAAAGAAGTTGGGAAA
1 TT-GGGGAAAAGAACTTGGGAAA
17949745 TTGGGGAAA
1 TTGGGGAAA
17949754 TGAAATCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 7 0.24
23 8 0.28
25 8 0.28
26 6 0.21
ACGTcount: A:0.37, C:0.02, G:0.42, T:0.19
Consensus pattern (22 bp):
TTGGGGAAAAGAACTTGGGAAA
Found at i:17949766 original size:23 final size:23
Alignment explanation
Indices: 17949716--17949769 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
17949706 AATAACTTGG
* *
17949716 GGGAAATTGGGGGAAAAGAAGTT
1 GGGAAATTGGGGGAAAAGAAATC
*
17949739 GGGAAATT-GGGGAAATGAAATC
1 GGGAAATTGGGGGAAAAGAAATC
17949761 GTGGAAATT
1 G-GGAAATT
17949770 TGACTTGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (23 bp):
GGGAAATTGGGGGAAAAGAAATC
Found at i:17950987 original size:15 final size:16
Alignment explanation
Indices: 17950969--17950998 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17950959 ACCCCCTAAC
17950969 CCCTT-ACCCCTAAAT
1 CCCTTAACCCCTAAAT
17950984 CCCTTAACCCCTAAA
1 CCCTTAACCCCTAAA
17950999 GCATAACCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.47, G:0.00, T:0.23
Consensus pattern (16 bp):
CCCTTAACCCCTAAAT
Found at i:17951987 original size:42 final size:41
Alignment explanation
Indices: 17951800--17952162 Score: 350
Period size: 41 Copynumber: 8.8 Consensus size: 41
17951790 TTTTGTTACT
* * **** *
17951800 ATTAGCGGCGCTTCGGCAAAAACGCCGCTAAAG-GTTAATAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGA-GC
* * * * * ** *
17951841 ATTCGCGGCGCTTAGATACAAACGCCGCTGAATACAGGAGA
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGAGC
* * * * *
17951882 ACTAGCAGCGCATATATAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGAGC
* ** * *
17951923 ATTAGCGGCGCATATTCGAAAACGCCGCTATAGACCCGGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCC-GAGC
* *
17951965 ATTAGCGACGCTTAGACAAAAACGCCGCTAAAGACTCGGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGAC-CCGAGC
* * * * * *
17952007 ATTACCGGCGTTTAGACGAAAGCGCTGCTAAAGACTCGGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGAC-CCGAGC
* * *
17952049 ATTAGTGGCGCTTAGACGAAAACGCCGCTATAGACCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGAGC
*
17952090 ATTAGCGGCGCTTAGACAAAAACGCCGCTATAGACCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGAGC
17952131 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAA
17952163 TGTTTAAAAA
Statistics
Matches: 266, Mismatches: 53, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
41 162 0.61
42 103 0.39
43 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (41 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGACCCGAGC
Found at i:17952027 original size:84 final size:83
Alignment explanation
Indices: 17951899--17952162 Score: 377
Period size: 84 Copynumber: 3.2 Consensus size: 83
17951889 GCGCATATAT
* **
17951899 AAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCATATTCGAAAACGCCGCTATAGACCCGGAG
1 AAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGGAG
*
17951964 CATTAGCGACGCTTAGAC
66 CATTAGCGGCGCTTAGAC
* * * * * * *
17951982 AAAAACGCCGCTAAAGACTCGGAGCATTACCGGCGTTTAGACGAAAGCGCTGCTAAAGACTCGGA
1 AAAAACGCCGCTAAAGAC-CCGAGCATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGGA
*
17952047 GCATTAGTGGCGCTTAGAC
65 GCATTAGCGGCGCTTAGAC
* * *
17952066 GAAAACGCCGCTATAGACCCGAGCATTAGCGGCGCTTAGACAAAAACGCCGCTATAGACCC-GAG
1 AAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGGAG
17952130 CATTAGCGGCGCTTAGAC
66 CATTAGCGGCGCTTAGAC
17952148 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
17952163 TGTTTAAAAA
Statistics
Matches: 155, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
82 33 0.21
83 53 0.34
84 69 0.45
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15
Consensus pattern (83 bp):
AAAAACGCCGCTAAAGACCCGAGCATTAGCGGCGCTTAGACGAAAACGCCGCTATAGACCCGGAG
CATTAGCGGCGCTTAGAC
Found at i:17952105 original size:23 final size:24
Alignment explanation
Indices: 17952074--17952147 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
17952064 ACGAAAACGC
17952074 CGCTATAGACCCGAGCATTAGCGG
1 CGCTATAGACCCGAGCATTAGCGG
* * *
17952098 CGCT-TAGA--C-A--A-AAACGC
1 CGCTATAGACCCGAGCATTAGCGG
17952115 CGCTATAGACCCGAGCATTAGCGG
1 CGCTATAGACCCGAGCATTAGCGG
17952139 CGCT-TAGAC
1 CGCTATAGAC
17952148 AAAAACGCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 15
0.64 0.10 0.26
Matches are distributed among these distances:
17 7 0.19
18 5 0.14
20 2 0.05
21 2 0.05
23 10 0.27
24 11 0.30
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (24 bp):
CGCTATAGACCCGAGCATTAGCGG
Found at i:17953242 original size:21 final size:21
Alignment explanation
Indices: 17953218--17953261 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
17953208 GAGGTTTAAT
17953218 GTCAGATATTGATGTTAGTAC
1 GTCAGATATTGATGTTAGTAC
17953239 GTCAGATATTGATGTTAGTAC
1 GTCAGATATTGATGTTAGTAC
17953260 GT
1 GT
17953262 TGAAGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (21 bp):
GTCAGATATTGATGTTAGTAC
Done.