Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 79 of 199
Found at i:22463822 original size:123 final size:123
Alignment explanation
Indices: 22463598--22463824 Score: 278
Period size: 123 Copynumber: 1.8 Consensus size: 123
22463588 TTTTGTTACT
* * * * * * *
22463598 ATTAACGGCGCTTCGGTAAAAACGCCGCTAAAGGTAAATGCATTAGCGGCGCTTAGCTACAAACG
1 ATTAACGGCGCTTAGATAAAAACGCCGCTAAAGGCAAATGAATTAGCAGCGCTGAGCTAAAAACG
* * *
22463663 CCGCTAAAGGCCAGAGAATTAGTGGTGCTCAGATAAAAATGCCGCTAAAGATCCGAGC
66 CCGCTAAAAGCCAGAGAATTAGCGGCGCTCAGATAAAAATGCCGCTAAAGATCCGAGC
* * *
22463721 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCCAGA-GAATTAGCAGCGCTGAGGTAAAAAC
1 ATTAACGGCGCTTAGATAAAAACGCCGCTAAAGG-CAAATGAATTAGCAGCGCTGAGCTAAAAAC
* * *
22463785 GCCGCTAAATATCC-GAGTATTAGCGGCGCTTAGATAAAAA
65 GCCGCTAAA-AGCCAGAGAATTAGCGGCGCTCAGATAAAAA
22463825 CGTTGCTAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
123 82 0.95
124 4 0.05
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (123 bp):
ATTAACGGCGCTTAGATAAAAACGCCGCTAAAGGCAAATGAATTAGCAGCGCTGAGCTAAAAACG
CCGCTAAAAGCCAGAGAATTAGCGGCGCTCAGATAAAAATGCCGCTAAAGATCCGAGC
Found at i:22469082 original size:19 final size:19
Alignment explanation
Indices: 22469057--22469118 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
22469047 AATGGAAGAT
*
22469057 TTATAAATAAATAATAATC
1 TTATAAATAAATAATAATA
* *
22469076 TTTTAAATATAATTA-AATA
1 TTATAAATA-AATAATAATA
*
22469095 TTATAAATAAATATTAATAA
1 TTATAAATAAATAATAAT-A
22469115 TTAT
1 TTAT
22469119 TGAGGTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 3 0.09
19 22 0.65
20 9 0.26
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TTATAAATAAATAATAATA
Found at i:22478098 original size:33 final size:33
Alignment explanation
Indices: 22478048--22478124 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
22478038 TATATACATG
* * * *
22478048 TGTAAGGCCATAGCTGGGCTATGGCA-TTCTAA
1 TGTAAGACCATAACTGGGCTATGGCACTACAAA
*
22478080 TGATAAGACCATAACTGGGTTATGGCACTACAAA
1 TG-TAAGACCATAACTGGGCTATGGCACTACAAA
22478114 TGTAAGACCAT
1 TGTAAGACCAT
22478125 GGCAGGGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
32 2 0.05
33 30 0.79
34 6 0.16
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (33 bp):
TGTAAGACCATAACTGGGCTATGGCACTACAAA
Found at i:22478137 original size:11 final size:11
Alignment explanation
Indices: 22478121--22478147 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22478111 AAATGTAAGA
22478121 CCATGGCAGGG
1 CCATGGCAGGG
22478132 CCATGGCAGGG
1 CCATGGCAGGG
22478143 CCATG
1 CCATG
22478148 TAAGACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.41, T:0.11
Consensus pattern (11 bp):
CCATGGCAGGG
Found at i:22484082 original size:19 final size:19
Alignment explanation
Indices: 22484034--22484147 Score: 120
Period size: 19 Copynumber: 6.0 Consensus size: 19
22484024 AGCACACGAA
* *
22484034 CCTGGCACACAAAGTGCAT
1 CCTGGCACACGAAGCGCAT
* * * *
22484053 ACTAGCGCACGAAGAGCAT
1 CCTGGCACACGAAGCGCAT
22484072 CCTGGCACACGAAGCGCAT
1 CCTGGCACACGAAGCGCAT
*
22484091 CCTGGCACATGAAGCGCAT
1 CCTGGCACACGAAGCGCAT
* *
22484110 CCTGGCACATGAAGTGCAT
1 CCTGGCACACGAAGCGCAT
* * *
22484129 CATGGCACATGAACCGCAT
1 CCTGGCACACGAAGCGCAT
22484148 AAACCCATAC
Statistics
Matches: 81, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.30, C:0.31, G:0.25, T:0.15
Consensus pattern (19 bp):
CCTGGCACACGAAGCGCAT
Found at i:22484110 original size:38 final size:38
Alignment explanation
Indices: 22484034--22484147 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
22484024 AGCACACGAA
* * * * * *
22484034 CCTGGCACACAAAGTGCATACTAGCGCACGAAGAGCAT
1 CCTGGCACACGAAGTGCATCCTGGCACATGAAGCGCAT
*
22484072 CCTGGCACACGAAGCGCATCCTGGCACATGAAGCGCAT
1 CCTGGCACACGAAGTGCATCCTGGCACATGAAGCGCAT
* * *
22484110 CCTGGCACATGAAGTGCATCATGGCACATGAACCGCAT
1 CCTGGCACACGAAGTGCATCCTGGCACATGAAGCGCAT
22484148 AAACCCATAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.30, C:0.31, G:0.25, T:0.15
Consensus pattern (38 bp):
CCTGGCACACGAAGTGCATCCTGGCACATGAAGCGCAT
Found at i:22487976 original size:13 final size:13
Alignment explanation
Indices: 22487958--22488010 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
22487948 AGTTTAGCAA
22487958 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
22487971 TGCTTTTGAAAGG
1 TGCTTTTGAAAAG
*
22487984 TG-TTATGGAAAAG
1 TGCTT-TTGAAAAG
*
22487997 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
22488010 T
1 T
22488011 TTGGTTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 2 0.06
13 29 0.88
14 2 0.06
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:22488529 original size:13 final size:14
Alignment explanation
Indices: 22488513--22488541 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22488503 CTCCTTTTAG
22488513 AAGTGCTTTT-AAA
1 AAGTGCTTTTGAAA
22488526 AAGTGCTTTTGAAA
1 AAGTGCTTTTGAAA
22488540 AA
1 AA
22488542 TAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (14 bp):
AAGTGCTTTTGAAA
Found at i:22488868 original size:19 final size:19
Alignment explanation
Indices: 22488829--22488868 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
22488819 CACCAATGAA
*
22488829 TTAAAAAATATTAATTTTT
1 TTAAAAAATATTAATTATT
22488848 TTAATAAAATATT-ATTATT
1 TTAA-AAAATATTAATTATT
22488867 TT
1 TT
22488869 TAAATATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTAAAAAATATTAATTATT
Found at i:22488874 original size:21 final size:20
Alignment explanation
Indices: 22488829--22488871 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22488819 CACCAATGAA
22488829 TTAA-AAAATATTAATTTTT
1 TTAATAAAATATTAATTTTT
22488848 TTAATAAAATATT-ATTATTT
1 TTAATAAAATATTAATT-TTT
22488868 TTAA
1 TTAA
22488872 ATATTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATAAAATATTAATTTTT
Found at i:22489352 original size:21 final size:22
Alignment explanation
Indices: 22489325--22489373 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 22
22489315 TTTGGATTAG
22489325 TATTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTGTAAT
22489347 T-TTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTGTAAT
22489368 TATTTT
1 TATTTT
22489374 ATAATTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (22 bp):
TATTTTGTATGAATATTGTAAT
Found at i:22489403 original size:33 final size:32
Alignment explanation
Indices: 22489366--22489462 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 32
22489356 GAATATTGTA
22489366 ATTATTTTATAATTAATTTGTTAGTAATTTAGG
1 ATTATTTTATAATTAATTT-TTAGTAATTTAGG
*
22489399 ATTATGTTATAA--AATTTTGT-GT--TTGTA--
1 ATTATTTTATAATTAATTTT-TAGTAATT-TAGG
*
22489426 ATTATTTTAAAATTAATTTATTAGTAATTTAGG
1 ATTATTTTATAATTAATTT-TTAGTAATTTAGG
22489459 ATTA
1 ATTA
22489463 AGTTATAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
27 10 0.20
28 2 0.04
29 8 0.16
30 6 0.12
31 8 0.16
32 2 0.04
33 15 0.29
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (32 bp):
ATTATTTTATAATTAATTTTTAGTAATTTAGG
Found at i:22489432 original size:60 final size:60
Alignment explanation
Indices: 22489361--22489482 Score: 201
Period size: 60 Copynumber: 2.0 Consensus size: 60
22489351 TGTATGAATA
* * *
22489361 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAAATT-TTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTAT-AAATTGTTGTGT
22489421 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGT
22489481 TT
1 TT
22489483 AGTTTAGTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 5 0.09
60 53 0.91
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGT
Found at i:22489617 original size:16 final size:16
Alignment explanation
Indices: 22489596--22489633 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
22489586 TTAACTCATT
22489596 TAATTTTTATATAATG
1 TAATTTTTATATAATG
22489612 TAA-TTTTATATAATG
1 TAATTTTTATATAATG
22489627 TAATTTT
1 TAATTTT
22489634 ATTTGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (16 bp):
TAATTTTTATATAATG
Found at i:22489620 original size:15 final size:15
Alignment explanation
Indices: 22489600--22489635 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
22489590 CTCATTTAAT
22489600 TTTTATATAATGTAA
1 TTTTATATAATGTAA
22489615 TTTTATATAATGTAA
1 TTTTATATAATGTAA
22489630 TTTTAT
1 TTTTAT
22489636 TTGATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTTATATAATGTAA
Found at i:22491208 original size:6 final size:6
Alignment explanation
Indices: 22491182--22491236 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
22491172 CATGCACCAA
* * * *
22491182 AGCCAA AGCCAG AGCCAG AGCCGG AGCCAG AGCTAG AGCCGG AGCCAG
1 AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG
*
22491230 AGGCAG A
1 AGCCAG A
22491237 AACGAAACTA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.33, C:0.29, G:0.36, T:0.02
Consensus pattern (6 bp):
AGCCAG
Found at i:22491209 original size:18 final size:18
Alignment explanation
Indices: 22491188--22491236 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
22491178 CCAAAGCCAA
22491188 AGCCAGAGCCAGAGCCGG
1 AGCCAGAGCCAGAGCCGG
*
22491206 AGCCAGAGCTAGAGCCGG
1 AGCCAGAGCCAGAGCCGG
*
22491224 AGCCAGAGGCAGA
1 AGCCAGAGCCAGA
22491237 AACGAAACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.39, T:0.02
Consensus pattern (18 bp):
AGCCAGAGCCAGAGCCGG
Found at i:22494835 original size:27 final size:27
Alignment explanation
Indices: 22494769--22494837 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
22494759 GAAAAATAAG
22494769 ACCATTGGCGCCTCTCAACATAGCACA
1 ACCATTGGCGCCTCTCAACATAGCACA
* * * * * *
22494796 ACTAATGGTGCCTGTC-AGATAAGCACC
1 ACCATTGGCGCCTCTCAACAT-AGCACA
22494823 ACCATTGGCGCCTCT
1 ACCATTGGCGCCTCT
22494838 GAGATAGGCG
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (27 bp):
ACCATTGGCGCCTCTCAACATAGCACA
Found at i:22494927 original size:21 final size:22
Alignment explanation
Indices: 22494888--22494928 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22494878 TTGACCCTGG
22494888 AAAAAATTAATTATATTTTATT
1 AAAAAATTAATTATATTTTATT
*
22494910 AAAAAATTAA-TATTTTTTA
1 AAAAAATTAATTATATTTTA
22494929 ATTCATTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAAAATTAATTATATTTTATT
Found at i:22495386 original size:20 final size:21
Alignment explanation
Indices: 22495361--22495400 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
22495351 ATAAAAAGGA
*
22495361 ATTAAATTATTTTTT-TTATG
1 ATTAAAATATTTTTTATTATG
22495381 ATTAAAATATTTTTTATTAT
1 ATTAAAATATTTTTTATTAT
22495401 ATTCTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTAAAATATTTTTTATTATG
Found at i:22495394 original size:21 final size:20
Alignment explanation
Indices: 22495361--22495400 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
22495351 ATAAAAAGGA
* *
22495361 ATTAAATTATTTTTTTTATG
1 ATTAAAATATTTTTATTATG
22495381 ATTAAAATATTTTTTATTAT
1 ATTAAAATA-TTTTTATTAT
22495401 ATTCTAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
ATTAAAATATTTTTATTATG
Found at i:22498549 original size:161 final size:161
Alignment explanation
Indices: 22498284--22498762 Score: 775
Period size: 161 Copynumber: 3.0 Consensus size: 161
22498274 CTGGTGAGAA
* *
22498284 GTCCAATGTACAAGTTGCCAAAGATCATTAACCAACAATCAATGAAGTTTCCAGTGTTGGTCAAC
1 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
* *
22498349 TCAAAGAGCTCATCAAAGAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACATTTATATACA
66 TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
*
22498414 TAATCAAATCCATACACACAAAGGATTGACC
131 TACTCAAATCCATACACACAAAGGATTGACC
*
22498445 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTTAAC
1 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
* * *
22498510 TCAAAGAGCTCATCAAATAAGCTATAAAAGACCAATTTGAAAGTGTTGATCTACCTTCATATACA
66 TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
* * *
22498575 TACTCAAATCCATACACACGAGGGATTGATC
131 TACTCAAATCCATACACACAAAGGATTGACC
*
22498606 GTCCAATGTACAAGTTGCCAAAAAAT-TTTAACCAACAATCAATGAAGTTTTCA--GTTGGTCAA
1 GTCCAATGTACAAGTTGCC-AAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAA
* * *
22498668 CTCAAAGAGCTCCTCAAAAAAGCTATAAAAGGCCAATTTGAAAGTGTTGATCCACCTTTATATAT
65 CTCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATAC
*
22498733 ATACTCAAATCCATACACACAAATGATTGA
130 ATACTCAAATCCATACACACAAAGGATTGA
22498763 TCGTTTGAGA
Statistics
Matches: 295, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
159 94 0.32
161 196 0.66
162 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (161 bp):
GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
TACTCAAATCCATACACACAAAGGATTGACC
Found at i:22501953 original size:42 final size:41
Alignment explanation
Indices: 22501843--22501957 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 41
22501833 AGCGCCGCTA
* * *
22501843 AAAACGTCGCTATAGATCAAGACCTATAGCGGCGCTTTTTCC
1 AAAACGCCGCTATAGATCAA-ACCTTTAGCGGCGCTTTTCCC
* *
22501885 ACAAACGCCACTATAGATCAGGACCTTTAGCGGCGCTTTTCCC
1 A-AAACGCCGCTATAGATCA-AACCTTTAGCGGCGCTTTTCCC
*
22501928 GAAAACGCCGCTATAGAACAAACCTTTAGC
1 -AAAACGCCGCTATAGATCAAACCTTTAGC
22501958 AACACTTCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
42 10 0.16
43 51 0.82
44 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (41 bp):
AAAACGCCGCTATAGATCAAACCTTTAGCGGCGCTTTTCCC
Found at i:22505708 original size:7 final size:7
Alignment explanation
Indices: 22505696--22505757 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
22505686 CTAATTAATT
22505696 TAAACCC
1 TAAACCC
22505703 TAAACCC
1 TAAACCC
*
22505710 T-GACTCC
1 TAAAC-CC
*
22505717 TAAATCC
1 TAAACCC
*
22505724 TAAAGCC
1 TAAACCC
22505731 TAAACCCC
1 TAAA-CCC
*
22505739 TAACCCC
1 TAAACCC
*
22505746 TAAACCT
1 TAAACCC
22505753 TAAAC
1 TAAAC
22505758 TCCAGCCCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
6 2 0.05
7 36 0.82
8 6 0.14
ACGTcount: A:0.39, C:0.39, G:0.03, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:22505779 original size:7 final size:7
Alignment explanation
Indices: 22505767--22505827 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
22505757 CTCCAGCCCT
22505767 TAAACCA
1 TAAACCA
22505774 TAAACCA
1 TAAACCA
*
22505781 TAAATCA
1 TAAACCA
*
22505788 TAAATCA
1 TAAACCA
* *
22505795 TAAGCCC
1 TAAACCA
22505802 TAAACCCA
1 TAAA-CCA
*
22505810 TAATCCA
1 TAAACCA
*
22505817 TAAACCT
1 TAAACCA
22505824 TAAA
1 TAAA
22505828 TAATATCTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 39 0.89
8 5 0.11
ACGTcount: A:0.51, C:0.26, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:22505828 original size:36 final size:36
Alignment explanation
Indices: 22505729--22505828 Score: 98
Period size: 36 Copynumber: 2.8 Consensus size: 36
22505719 AATCCTAAAG
* * * *
22505729 CCTAAACCCCTAACCCCTAAACCTTAAA-CTCCAGC
1 CCTAAACCCATAAACCATAAACCTTAAATCTCAAGC
* *
22505764 CCTTAAA-CCATAAACCATAAATCATAAATCAT-AAGC
1 CC-TAAACCCATAAACCATAAACCTTAAATC-TCAAGC
*
22505800 CCTAAACCCATAATCCATAAACCTTAAAT
1 CCTAAACCCATAAACCATAAACCTTAAAT
22505829 AATATCTTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
35 22 0.42
36 29 0.56
37 1 0.02
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.21
Consensus pattern (36 bp):
CCTAAACCCATAAACCATAAACCTTAAATCTCAAGC
Found at i:22505855 original size:14 final size:14
Alignment explanation
Indices: 22505838--22505883 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
22505828 TAATATCTTT
22505838 TAAACCTTAAACCC
1 TAAACCTTAAACCC
* *
22505852 TAAACCATATACCC
1 TAAACCTTAAACCC
*
22505866 -CAACCTTAAACCC
1 TAAACCTTAAACCC
22505879 TAAAC
1 TAAAC
22505884 TATAATGATA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:22506011 original size:19 final size:19
Alignment explanation
Indices: 22505987--22506118 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
22505977 AACTTTTGAG
*
22505987 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
22506006 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
22506025 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22506044 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
22506065 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
22506084 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22506103 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22506119 ATATATGATT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
19 85 0.82
21 19 0.18
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22506054 original size:59 final size:57
Alignment explanation
Indices: 22505987--22506125 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 57
22505977 AACTTTTGAG
* *
22505987 GATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* * *
22506044 GATATATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
22506103 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
22506126 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 16 0.21
59 52 0.69
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:22506158 original size:57 final size:57
Alignment explanation
Indices: 22505988--22506141 Score: 184
Period size: 59 Copynumber: 2.6 Consensus size: 57
22505978 ACTTTTGAGG
* * * **
22505988 ATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGA
1 ATATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGA
22506046 TATATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATATG-
1 -ATATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGA
*
22506104 ATATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 ATATGCAATCTTAG---ATATGA-TATGTAATCTTAGA
22506142 GATTTAATTT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
57 14 0.16
59 52 0.61
60 6 0.07
61 13 0.15
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (57 bp):
ATATGCAATCTTAGATATGATATGTAATCTTAGAATGATATATAATCTTAGATATGA
Found at i:22506467 original size:6 final size:7
Alignment explanation
Indices: 22506450--22506486 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
22506440 GTAATTAAGT
22506450 TTTTTTA
1 TTTTTTA
22506457 TTTTTTA
1 TTTTTTA
22506464 TTTTTTA
1 TTTTTTA
22506471 TTTTTTA
1 TTTTTTA
22506478 -TTTTTA
1 TTTTTTA
22506484 TTT
1 TTT
22506487 ATTTTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:22506932 original size:25 final size:26
Alignment explanation
Indices: 22506889--22506938 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
22506879 TGTACATGTA
22506889 TATATTTTTTTAAACGAATATTTTCC
1 TATATTTTTTTAAACGAATATTTTCC
*
22506915 TATATTTTTTT-AATGAATATTTTC
1 TATATTTTTTTAAACGAATATTTTC
22506939 ATATTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (26 bp):
TATATTTTTTTAAACGAATATTTTCC
Found at i:22507724 original size:98 final size:98
Alignment explanation
Indices: 22507604--22507793 Score: 326
Period size: 98 Copynumber: 1.9 Consensus size: 98
22507594 TTAAAAATAA
* * *
22507604 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
22507669 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
22507702 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
*
22507767 TTAAATCTTGGATGAGTGGATGTTCTT
66 TTAAATCTTGGATAAGTGGATGTTCTT
22507794 CCGAGTTTGG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:22507844 original size:79 final size:79
Alignment explanation
Indices: 22507713--22507872 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
22507703 AAAGGAAATA
22507713 TTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTCTTAAATCTTGG
1 TTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTCTTAAATCTTGG
22507778 ATGAGTGGATGTTC
66 ATGAGTGGATGTTC
22507792 TTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTCTTAAATCTTGG
1 TTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTCTTAAATCTTGG
22507857 ATGAGTGGATGTTC
66 ATGAGTGGATGTTC
22507871 TT
1 TT
22507873 TTAAAGTTTT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.20, C:0.14, G:0.29, T:0.38
Consensus pattern (79 bp):
TTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTCTTAAATCTTGG
ATGAGTGGATGTTC
Found at i:22513855 original size:132 final size:132
Alignment explanation
Indices: 22513614--22514266 Score: 1056
Period size: 132 Copynumber: 4.9 Consensus size: 132
22513604 CTGCATTGAC
*
22513614 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
22513679 CAAGCCTTGTCTCCCTGAGCAGCAACGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGTA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22513744 GT
131 GT
* *
22513746 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * *
22513811 CAAGCATTGTCGCCCTAAGCAACAGCGGAGAAGGTTGAAAATTGTAGATCTTATCTCCCTAAACA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22513876 GT
131 GT
* * *
22513878 AGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGCAGCAGATTTAAGCTAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
22513943 TAAGCCTTGTCTCTCTCAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22514008 GT
131 GT
*
22514010 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
22514075 CAAGCCTTGTCCCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22514140 GT
131 GT
* *
22514142 AGTGGAGCAGATCGAAGACGACGAATCTTAACTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
22514207 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATGGCA-AGTCTTATCTCCCT
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGA-TCTTATCTCCCT
22514267 GAAGTTGCAG
Statistics
Matches: 480, Mismatches: 40, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
131 1 0.00
132 479 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:22514169 original size:44 final size:44
Alignment explanation
Indices: 22513614--22514171 Score: 152
Period size: 44 Copynumber: 12.7 Consensus size: 44
22513604 CTGCATTGAC
* * **
22513614 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCTAAG-A-T
1 AGTGGAGCAGATTGAAGACGACGAATCTTATCTCCCTAAGCAGT
* * * * * * *
22513656 AGTGGGAAGCAGATTTAAG-CCACCAAGCCTTGTCTCCCTGAGCAGC
1 AGT-GG-AGCAGATTGAAGACGACGAA-TCTTATCTCCCTAAGCAGT
** * * * *
22513702 AACGGAGAAGGTTGAAGATTGTA-G-ATCTTATCTCCCTAAGTAGT
1 AGTGGAGCAGATTGAAGA-CG-ACGAATCTTATCTCCCTAAGCAGT
* **
22513746 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCTAAG-A-T
1 AGTGGAGCAGATTGAAGACGACGAATCTTATCTCCCTAAGCAGT
* * * * * * **
22513788 AGTGGGAAGCAGATTTAAG-CCACCAAGCATTGTCGCCCTAAGCAAC
1 AGT-GG-AGCAGATTGAAGACGACGAATC-TTATCTCCCTAAGCAGT
* * * * * *
22513834 AGCGGAGAAGGTTGAAAATTGTA-G-ATCTTATCTCCCTAAACAGT
1 AGTGGAGCAGATTGAAGA-CG-ACGAATCTTATCTCCCTAAGCAGT
* * * *
22513878 AGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACGACGAATCTTATC-TCCCTAAGCAGT
* * * * * * * *
22513920 AGTGGGCAGCAGATTTAAG-CTACTAAGCCTTGTCTCTCTCAGCAGC
1 AGT-GG-AGCAGATTGAAGACGACGAA-TCTTATCTCCCTAAGCAGT
** * * *
22513966 AGCAGAGAAGGTTGAAGATTGTA-G-ATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATTGAAGA-CG-ACGAATCTTATCTCCCTAAGCAGT
* ** *
22514010 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCC-AAG-A-T
1 AGTGGAGCAGATTGAAGACGACGAATCTTATC-TCCCTAAGCAGT
* * * * * * * *
22514052 AGTGGGAAGCAGATTTAAG-CCACCAAGCCTTGTCCCCCTGAGCAGC
1 AGT-GG-AGCAGATTGAAGACGACGAA-TCTTATCTCCCTAAGCAGT
* * * *
22514098 AGCGGAGAAGGTTGAAGATTGTA--AATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATTGAAGA-CG-ACGAATCTTATCTCCCTAAGCAGT
*
22514142 AGTGGAGCAGATCGAAGACGACGAATCTTA
1 AGTGGAGCAGATTGAAGACGACGAATCTTA
22514172 ACTTTCCAAG
Statistics
Matches: 346, Mismatches: 126, Indels: 86
0.62 0.23 0.15
Matches are distributed among these distances:
42 17 0.05
43 38 0.11
44 257 0.74
45 23 0.07
46 7 0.02
47 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
AGTGGAGCAGATTGAAGACGACGAATCTTATCTCCCTAAGCAGT
Found at i:22514306 original size:44 final size:43
Alignment explanation
Indices: 22514253--22515101 Score: 507
Period size: 44 Copynumber: 19.6 Consensus size: 43
22514243 GAAGATGGCA
*
22514253 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* *
22514297 AGTCCTATCTCCCTGAAGTTGCAGTGGAGC-GAATTAAAACC-T
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGCCAT
* * ** * * * *** *
22514339 CAAATATTATCTCTTTGAAATTGCAG-AGAACAGATCGCA-TC-T
1 --AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *
22514381 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGGCTAAGTAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTA--AAGCCAT
* * *
22514425 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTAAAGATGGCA-
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCAT
*
22514470 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* * ** * * * *
22514514 AATCCTATCTCATTGAAGTTGCATTAGAGCGGATTAAAACC-T
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *** *
22514556 CAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-T
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
*
22514598 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCAT
* * *
22514642 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCAT
*
22514687 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* * * * * *
22514731 AATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *** *
22514774 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TCA-
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* *
22514815 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCAT
* * *
22514859 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCAT
22514904 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* * * * * *
22514948 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *** *
22514991 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-T
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * * *
22515032 AGTCATATCTCCCTAAAGTTGCAGTGAAGCAGACTAAATAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-TA-AAGCCAT
22515076 AGTCTTATC-CTCCTGAAGTTGCAGTG
1 AGTCTTATCTC-CCTGAAGTTGCAGTG
22515102 AGGCAGACTA
Statistics
Matches: 633, Mismatches: 118, Indels: 108
0.74 0.14 0.13
Matches are distributed among these distances:
40 79 0.12
41 30 0.05
42 22 0.03
43 50 0.08
44 355 0.56
45 94 0.15
46 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
Found at i:22514489 original size:89 final size:87
Alignment explanation
Indices: 22514381--22515101 Score: 411
Period size: 89 Copynumber: 8.3 Consensus size: 87
22514371 GATCGCATCT
*
22514381 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
*
22514446 CAGTGGGGCAGACTAAAGATGGCA
64 CAGTGGAGCAGACTAAAGATGGCA
* * * * * *
22514470 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCA-GATTA-AAGCCGATAATCCTATCTCATTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGAAG-C-A-AGTCTTATCTC-CTGAAGT
* * * * ***
22514533 TGCATTAGAGCGGATTAAA-ACCTC-
62 TGCAGTGGAGCAGACTAAAGATGGCA
* * * * * * *
22514557 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCA-GAT-CGCATCTAGTCTTATCTCCCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGAAGCAAGTCTTATCT-CCTGAAGTTG
*
22514619 CAGTGGAGCAGACT-AAG-TAAGCA
64 CAGTGGAGCAGACTAAAGAT-GGCA
* * *
22514642 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGGCT-AAGA-AGCAAGTCTTATCT-CCTGAAGT
* * ** **
22514706 TGTAGTGGAGCAGATTAAAGCCGATA
62 TGCAGTGGAGCAGACTAAAGATGGCA
* * * * *
22514732 A-TCCTATCTCCCTGAAATTGCAGTGGAGC-GGATTAA-AACCTTAGATCTTATCTCTCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-CTAAGAAGC-AAG-TCTTATCTC-CTGAAGT
* *
22514794 TGCAG-AGAGCAGA-T--CGCAT--CA
62 TGCAGTGGAGCAGACTAAAG-ATGGCA
* *
22514815 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
* *
22514880 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGACTAAAGATGGCA
* * * *
22514904 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTA-AAGCCGATAATCCTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGAAG-C-A-AGTCTTATCT-CCTGAAGT
* * * * *
22514967 TACAGTGGAGCGGATTAAA-A--CCTT
62 TGCAGTGGAGCAGACTAAAGATGGC-A
* * * * * * * * *
22514991 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCA-GAT-CGCATCTAGTCATATCTCCCTAAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGAAGCAAGTCTTATCT-CCTGAAGTTG
* * *
22515053 CAGTGAAGCAGACTAAATA-AGCA
64 CAGTGGAGCAGACTAAAGATGGCA
22515076 AGTCTTATC-CTCCTGAAGTTGCAGTG
1 AGTCTTATCTC-CCTGAAGTTGCAGTG
22515102 AGGCAGACTA
Statistics
Matches: 485, Mismatches: 101, Indels: 96
0.71 0.15 0.14
Matches are distributed among these distances:
83 6 0.01
84 144 0.30
85 22 0.05
86 17 0.04
87 37 0.08
88 80 0.16
89 173 0.36
90 6 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (87 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGAGCAGACTAAAGATGGCA
Found at i:22514626 original size:217 final size:217
Alignment explanation
Indices: 22514244--22515120 Score: 1484
Period size: 217 Copynumber: 4.0 Consensus size: 217
22514234 GAGAAGGTTG
* *
22514244 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCGATAGTCCTATCTCC
1 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
* * * * * *
22514309 CTGAAGTTGCAGTGGAGCGAATTAAAACCTCAAATATTATCTCTTTGAAATTGCAGAGAACAGAT
66 CTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
* *
22514374 CGCATCTAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGGCTAAGTAAGCAAGTCTTATCCTCCT
131 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
22514439 GAAGTTGCAGTGGGGCAGACTA
196 GAAGTTGCAGTGGGGCAGACTA
* *
22514461 AAGATGGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCA
1 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
* * *
22514526 TTGAAGTTGCATTAGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
66 CTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
22514591 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
131 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
*
22514656 GAAGTTGCAGTGGGGCAGACTG
196 GAAGTTGCAGTGGGGCAGACTA
*
22514678 AAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
1 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
* *
22514743 CTGAAATTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
66 CTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
* *
22514808 CGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
131 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
*
22514873 GAAGTTGCAGTGGGGCAGACTG
196 GAAGTTGCAGTGGGGCAGACTA
22514895 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
1 AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
* *
22514960 CTGAAGTTACAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
66 CTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
* * * *
22515025 CGCATCTAGTCATATCTCCCTAAAGTTGCAGTGAAGCAGACTAAATAAGCAAGTCTTATCCTCCT
131 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
*
22515090 GAAGTTGCAGTGAGGCAGACTA
196 GAAGTTGCAGTGGGGCAGACTA
*
22515112 AATATGGCA
1 AAGATGGCA
22515121 CTAATTCCTA
Statistics
Matches: 622, Mismatches: 38, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 622 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
AAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCC
CTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT
GAAGTTGCAGTGGGGCAGACTA
Found at i:22514724 original size:173 final size:171
Alignment explanation
Indices: 22514425--22515023 Score: 450
Period size: 173 Copynumber: 3.4 Consensus size: 171
22514415 TAAGTAAGCA
* *
22514425 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTAAAGATGGCAAGTCTTATCTCCTTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTCC-TGAAGT
* * * * * ** * * *
22514489 TGCAGTGGAGCAGATTAA-AGCCGATAATCCTATCTCATTGAAGTTGCATTAGAGCGGATTAAAA
62 TGCAGTGGAGCAGACTAAGTGGC-A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA
* * * *** *
22514553 CC-TCAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
125 CCAT-A-ATCCTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACCTT
22514598 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
* * *
22514663 CAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCC
64 CAGTGGAGCAGACT-AAG-TGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
* *
22514728 GATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCTT
127 -ATAATCCTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACCTT
* * * * * *
22514774 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCAAATCTTATCTCCCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCT-CCTGAAGTTG
* * *
22514836 CAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGAT
64 CAGTGGAGCAGACTAAGT-GGCAAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-
** * * * * * *
22514900 GGCA-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
124 ACCATAATCCTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACC-TT
* * * * * * *
22514948 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTC-CTGAAGTT
*
22515012 GCAG-AGAGCAGA
63 GCAGTGGAGCAGA
22515024 TCGCATCTAG
Statistics
Matches: 347, Mismatches: 54, Indels: 47
0.77 0.12 0.10
Matches are distributed among these distances:
171 2 0.01
172 71 0.20
173 182 0.52
174 20 0.06
175 12 0.03
176 19 0.05
177 41 0.12
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (171 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGAGCAGACTAAGTGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAA
TCCTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACCTT
Found at i:22515310 original size:19 final size:19
Alignment explanation
Indices: 22515286--22515398 Score: 172
Period size: 19 Copynumber: 5.8 Consensus size: 19
22515276 AATTTTTGAG
*
22515286 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
22515305 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
22515324 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22515343 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
**
22515364 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22515383 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22515399 ATATATGATT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
19 66 0.78
21 19 0.22
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22515353 original size:59 final size:59
Alignment explanation
Indices: 22515287--22515398 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
22515277 ATTTTTGAGG
* *
22515287 ATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
* *
22515346 ATATGCAATCTTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGA
1 ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGA
22515399 ATATATGATT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (59 bp):
ATATGCAATCTTAGATATGATATACAATCCTAGATATGATATGCAATCTTAGATATGAT
Found at i:22515361 original size:40 final size:38
Alignment explanation
Indices: 22515286--22515405 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 38
22515276 AATTTTTGAG
* *
22515286 GATATGCAATCTTATATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
22515324 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCTTAGATAT
**
22515364 GATATATAATCTTAGATATGATATGCAATCTTAGA-AT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
22515401 -ATATG
1 GATATG
22515406 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
36 4 0.05
37 2 0.03
38 34 0.45
40 35 0.47
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:22515747 original size:7 final size:7
Alignment explanation
Indices: 22515735--22515764 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22515725 TAATTAAGTT
22515735 TTTTTTA
1 TTTTTTA
22515742 TTTTTTA
1 TTTTTTA
22515749 -TTTTTA
1 TTTTTTA
22515755 TTTTTTA
1 TTTTTTA
22515762 TTT
1 TTT
22515765 ATTTTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:22515752 original size:13 final size:13
Alignment explanation
Indices: 22515736--22515764 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22515726 AATTAAGTTT
22515736 TTTTTATTTTTTA
1 TTTTTATTTTTTA
22515749 TTTTTATTTTTTA
1 TTTTTATTTTTTA
22515762 TTT
1 TTT
22515765 ATTTTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:22516967 original size:98 final size:98
Alignment explanation
Indices: 22516851--22517047 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
22516841 TTAAAAATAA
* *
22516851 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
22516916 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
22516949 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
22517014 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22517047 T
1 T
22517048 TTTATTATAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:22518031 original size:41 final size:42
Alignment explanation
Indices: 22517946--22518060 Score: 144
Period size: 41 Copynumber: 2.8 Consensus size: 42
22517936 TAAAATATCT
* * *
22517946 TTAGCGGCGCTTTTCCAAAAACGCCACTAAAG-CCAAGAGAA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGAACAACAGAA
* *
22517987 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGAAC-ACAGTA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGAACAACAGAA
***
22518028 TTAGCGGCGCTTTTTTGAAAACGCCGCTAAAGA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA
22518061 TCCGAAAGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 63 0.98
42 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (42 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGAACAACAGAA
Found at i:22518170 original size:39 final size:38
Alignment explanation
Indices: 22518117--22518233 Score: 117
Period size: 40 Copynumber: 3.0 Consensus size: 38
22518107 CATTTTTATA
*
22518117 AAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTTC
1 AAAAATGCCGCTAATGCTCATTTTTAGCGGCGTTTTTC
* * * * *
22518155 AGAAAATGCCACTAATGCTTGATCTTTAGTGGCGATTTTC
1 A-AAAATGCCGCTAATGC-TCATTTTTAGCGGCGTTTTTC
* * *
22518195 ATAAATCGCCGCTAATGCTCGATTTTTACCGACGTTTTT
1 AAAAAT-GCCGCTAATGCTC-ATTTTTAGCGGCGTTTTT
22518234 TTCTAAGCGT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
38 1 0.02
39 19 0.31
40 41 0.67
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (38 bp):
AAAAATGCCGCTAATGCTCATTTTTAGCGGCGTTTTTC
Found at i:22520110 original size:18 final size:19
Alignment explanation
Indices: 22520087--22520131 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
22520077 AAATTTACTA
22520087 ATTAATTT-TTTGGACCAC
1 ATTAATTTCTTTGGACCAC
22520105 ATTAATTTCTTTGGACCAC
1 ATTAATTTCTTTGGACCAC
22520124 ATTAATTT
1 ATTAATTT
22520132 AAGATCTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTAATTTCTTTGGACCAC
Found at i:22520784 original size:6 final size:6
Alignment explanation
Indices: 22520773--22520805 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
22520763 AAAAAAATTA
22520773 TCAATG TCAATG TCAATG TCAATG TCAATG TCA
1 TCAATG TCAATG TCAATG TCAATG TCAATG TCA
22520806 TCAATGATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (6 bp):
TCAATG
Found at i:22530779 original size:54 final size:54
Alignment explanation
Indices: 22530696--22530830 Score: 189
Period size: 54 Copynumber: 2.5 Consensus size: 54
22530686 CACACAGCCG
* * * *
22530696 TGTGTCTTAAAATAGTGAGTAACACGGTCTGAGACACGACCAATGACATGACTA
1 TGTGTCTTAAAACAGTGAGTAACACGGTCTGAAACACGACCAACGACATGACCA
* * * *
22530750 TGTGTTTTAAAACAGTGAGTAACATGGTCTGAAACACGGCCAACGACATGACCG
1 TGTGTCTTAAAACAGTGAGTAACACGGTCTGAAACACGACCAACGACATGACCA
*
22530804 TGTGTCTTAAAACAGTGAGTTACACGG
1 TGTGTCTTAAAACAGTGAGTAACACGG
22530831 GTAGGTACAC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (54 bp):
TGTGTCTTAAAACAGTGAGTAACACGGTCTGAAACACGACCAACGACATGACCA
Found at i:22532728 original size:21 final size:21
Alignment explanation
Indices: 22532692--22532745 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
22532682 CAAAACTGAA
* *
22532692 CAATTCAACTAGATCAAAATC
1 CAATTAAACTAAATCAAAATC
22532713 C-ATCTAAACTAAATCAAAATC
1 CAAT-TAAACTAAATCAAAATC
22532734 CAATTAAACTAA
1 CAATTAAACTAA
22532746 CCATGCCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (21 bp):
CAATTAAACTAAATCAAAATC
Found at i:22540230 original size:36 final size:37
Alignment explanation
Indices: 22540165--22540246 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 37
22540155 TTCTAATTGG
* * **
22540165 AACACACCAGATGCTTATAAGAGATAATCCATTCGA-
1 AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
* *
22540201 AACACACCAGATGCTCATATGAGCCAATCCACCCGAT
1 AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
22540238 AACACACCA
1 AACACACCA
22540247 ATGGCTCCGA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 30 0.77
37 9 0.23
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17
Consensus pattern (37 bp):
AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
Found at i:22546401 original size:17 final size:17
Alignment explanation
Indices: 22546376--22546415 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
22546366 TAGAATTGGG
* *
22546376 TTGAGAAAATTATTTAA
1 TTGAAAAAATTAATTAA
22546393 TTGAAAAAATTAATTAA
1 TTGAAAAAATTAATTAA
22546410 TT-AAAA
1 TTGAAAA
22546416 CTAATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (17 bp):
TTGAAAAAATTAATTAA
Found at i:22547255 original size:30 final size:31
Alignment explanation
Indices: 22547209--22547299 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 31
22547199 ATACATATTA
* *
22547209 CATTTTCATACTTTGTATTCATTCACATTTG
1 CATTATCATACCTTGTATTCATTCACATTTG
* **
22547240 TA-TATCATACCTTGTAATT-GGTCACATTTG
1 CATTATCATACCTTGT-ATTCATTCACATTTG
* * * *
22547270 CATTTTCATACCCTGTAATCATTCATATTT
1 CATTATCATACCTTGTATTCATTCACATTT
22547300 TCACATATAT
Statistics
Matches: 45, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
30 23 0.51
31 22 0.49
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.47
Consensus pattern (31 bp):
CATTATCATACCTTGTATTCATTCACATTTG
Found at i:22547287 original size:31 final size:30
Alignment explanation
Indices: 22547231--22547288 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
22547221 TTGTATTCAT
* *
22547231 TCACATTTGTATATCATACCTTGTAATTGG
1 TCACATTTGCATATCATACCCTGTAATTGG
*
22547261 TCACATTTGCATTTTCATACCCTGTAAT
1 TCACATTTGCA-TATCATACCCTGTAAT
22547289 CATTCATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 10 0.42
31 14 0.58
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (30 bp):
TCACATTTGCATATCATACCCTGTAATTGG
Found at i:22553205 original size:46 final size:46
Alignment explanation
Indices: 22553152--22553291 Score: 228
Period size: 46 Copynumber: 3.0 Consensus size: 46
22553142 CCATGGCAAA
*
22553152 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATTCTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
22553198 TTGTGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* *
22553244 TTGTGAAAAGTAGGTATGGTATTTCAGTGAA-AGAAACTATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGA-AAACCATACTGAG
22553290 TT
1 TT
22553292 ATAGCATTGT
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 1 0.01
46 87 0.99
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:22556250 original size:7 final size:7
Alignment explanation
Indices: 22556233--22556264 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
22556223 ATAATATGCC
22556233 TTAGTTAT
1 TTAG-TAT
22556241 TTAGTAT
1 TTAGTAT
22556248 TTAGTAT
1 TTAGTAT
22556255 TTAGTAT
1 TTAGTAT
22556262 TTA
1 TTA
22556265 TTTGTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TTAGTAT
Found at i:22556594 original size:69 final size:69
Alignment explanation
Indices: 22556490--22556647 Score: 210
Period size: 69 Copynumber: 2.3 Consensus size: 69
22556480 GTGGTATTGG
* * * * *
22556490 ACCTGTGAGCCCTAAAATGACAGTTAGAAGTTTTTAGCTCTCGCTAACTGTTTGGGGCTACAATG
1 ACCTGCGAGCCATAAAATGAAAGTTAGAAGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAATG
*
22556555 TTTG
66 TTTA
* * * *
22556559 ACGTGCGAGCCATAAAATGAAAGTT-GATAGCTTTTAACTCTCGTTAACTGTTTGGGGCTGCAGT
1 ACCTGCGAGCCATAAAATGAAAGTTAGA-AGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAAT
22556623 GTTTA
65 GTTTA
22556628 ACCTGCGAGCCATAAAATGA
1 ACCTGCGAGCCATAAAATGA
22556648 CACTCGTTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
68 2 0.03
69 75 0.97
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (69 bp):
ACCTGCGAGCCATAAAATGAAAGTTAGAAGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAATG
TTTA
Found at i:22556659 original size:52 final size:52
Alignment explanation
Indices: 22556598--22556697 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
22556588 GCTTTTAACT
* * *
22556598 CTCGTTAACTGTTTGGGGCTGCAGTGTTTAACCTGCGAGCCATAAAATGACA
1 CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAATGACA
* * *
22556650 CTCGTTAACTATTTGGGGTTGCGGTGTTTAACCTACAAGCCTTAAAAT
1 CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAAT
22556698 TATAGTTGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (52 bp):
CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAATGACA
Found at i:22556781 original size:69 final size:69
Alignment explanation
Indices: 22556671--22556939 Score: 304
Period size: 69 Copynumber: 3.9 Consensus size: 69
22556661 TTTGGGGTTG
* * * * * * * * *
22556671 CGGTGTTTAACCTACAAGCCTTAAAATTATAGTTGGGAGCTTTTAACTCTCGCTAATTGTTTAGG
1 CGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTAGG
*
22556736 GTTA
66 GCTA
* ** * *
22556740 CGGTGTTCAACCTGCGAGCCATAAAATGACAGCTAAAAGCTTTTAACTCTCAATAACTGTTTGGG
1 CGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTAGG
22556805 GCTA
66 GCTA
* * * * * * *
22556809 TGGTGTTTAACTTGCGAGCCATGAAATGACAGCTAGGAGTTTTTAACTATCACCAATTGTTTAGG
1 CGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTAGG
*
22556874 GCTG
66 GCTA
* * *
22556878 CGGTGTTTAACCTACGAGCCATAAAATGACAGCTCGGAGCTTTTAACTCTCGCTAACTGTTT
1 CGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTT
22556940 TGGTTTTCGA
Statistics
Matches: 162, Mismatches: 38, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
69 162 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (69 bp):
CGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAACTGTTTAGG
GCTA
Found at i:22559051 original size:88 final size:88
Alignment explanation
Indices: 22558891--22559058 Score: 192
Period size: 88 Copynumber: 1.9 Consensus size: 88
22558881 ACTCCGTCGT
* * * **
22558891 TCCTAATACTGACACTCCGTGCGAGCTTCAAGCCTGTTGGACACGTGTCTCACTTTGGGTCACCA
1 TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
*
22558956 ACGGAGCATGCGGTCCTTTTCGA
66 ACAGAGCATGCGGTCCTTTTCGA
* * * * * * * * *
22558979 TCCTAGTACTAACATTCCATGCGGGCTTCAGGCCTGCTGGACAGGTGTTTTACCCTGGGTCGCCT
1 TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
*
22559044 ACAGAGCATGTGGTC
66 ACAGAGCATGCGGTC
22559059 TCCCTTTTGC
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (88 bp):
TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
ACAGAGCATGCGGTCCTTTTCGA
Found at i:22560915 original size:21 final size:21
Alignment explanation
Indices: 22560889--22560942 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
22560879 AATAGCGGTG
*
22560889 GCGGTGAGATTAATTACTGTA
1 GCGGTGAGATTAAGTACTGTA
**
22560910 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAAGTACTGTA
22560931 GCGGTGAGATTA
1 GCGGTGAGATTA
22560943 GAAACAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.09, G:0.37, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAAGTACTGTA
Found at i:22561258 original size:22 final size:22
Alignment explanation
Indices: 22561207--22561258 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
22561197 TTTTATAGTT
*
22561207 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
22561230 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
22561252 ATAATAA
1 ATAATAA
22561259 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:22565240 original size:15 final size:15
Alignment explanation
Indices: 22565220--22565251 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22565210 TGTAAGTTTC
22565220 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
22565235 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
22565250 TT
1 TT
22565252 GGGGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:22565934 original size:379 final size:379
Alignment explanation
Indices: 22565235--22565979 Score: 1454
Period size: 379 Copynumber: 2.0 Consensus size: 379
22565225 AATAAAATGA
*
22565235 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAATCAGTGAAGATAATCCTG
1 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
*
22565300 GGAAGTGAATGGGAAACTTTCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
66 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
22565365 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
131 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
22565430 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
196 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
22565495 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
261 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
*
22565560 CAATTGTGTGTTCATCTCTTGTTTTCATTATAATTTATTGCATTTGTAAGTTTC
326 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGCATTTGTAAGTTTC
22565614 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
1 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
22565679 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
66 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
22565744 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
131 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
*
22565809 TTTTCATTTGGTTAACGAATCTTTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
196 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
22565874 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
261 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
22565939 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGC
326 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGC
22565980 TATTGAATGC
Statistics
Matches: 362, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
379 362 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (379 bp):
TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGCATTTGTAAGTTTC
Found at i:22568302 original size:21 final size:21
Alignment explanation
Indices: 22568276--22568319 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22568266 AAATAGAGCT
22568276 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
22568297 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
22568318 TC
1 TC
22568320 AATTGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.32, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:22576123 original size:30 final size:28
Alignment explanation
Indices: 22576089--22576146 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
22576079 TTTGAATAAT
22576089 TTTTTAAAATTTTAAAAGTTATAAAAAATA
1 TTTTTAAAATTTTAAAA-TT-TAAAAAATA
* *
22576119 TTTTTAATATTTTTAAATTTAAAAAATA
1 TTTTTAAAATTTTAAAATTTAAAAAATA
22576147 ATTAAATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 2 0.08
30 15 0.58
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
TTTTTAAAATTTTAAAATTTAAAAAATA
Found at i:22585014 original size:26 final size:26
Alignment explanation
Indices: 22584980--22585029 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22584970 TGAGCGTTCC
22584980 ATTATATGGCTCTTCGTGAGCTTCTTG
1 ATTATATGGCTCTTCG-GAGCTTCTTG
22585007 ATTA-ATGGCTCTTCGGAGCTTCT
1 ATTATATGGCTCTTCGGAGCTTCT
22585030 CGACATGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.35
26 11 0.48
27 4 0.17
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (26 bp):
ATTATATGGCTCTTCGGAGCTTCTTG
Found at i:22585134 original size:73 final size:73
Alignment explanation
Indices: 22584998--22585135 Score: 170
Period size: 73 Copynumber: 1.9 Consensus size: 73
22584988 GCTCTTCGTG
* * * * * *
22584998 AGCTTCTTGATTAATGGCTCTTCGGAGCTTCTCGACATGGCTCGCTTGAACTTTCTGATATATGG
1 AGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACATGGCTCACATGAACTTTCCGATATATGG
22585063 TTATCCGA
66 TTATCCGA
* ** *
22585071 AGCTTATTGATTAATGGCTTTTCAGAGCTACTCGTTATTGGCTCACATGAGCTTTCCGA-ATATG
1 AGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACA-TGGCTCACATGAACTTTCCGATATATG
22585135 G
65 G
22585136 CTCTTATGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
73 37 0.69
74 17 0.31
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (73 bp):
AGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACATGGCTCACATGAACTTTCCGATATATGG
TTATCCGA
Found at i:22585148 original size:73 final size:73
Alignment explanation
Indices: 22584982--22585148 Score: 162
Period size: 73 Copynumber: 2.3 Consensus size: 73
22584972 AGCGTTCCAT
* * * * * *
22584982 TATATGGCTCTTCGTGAGCTTCTTGATTAATGGCTCTTCGGAGCTTCTCGACATGGCTCGCTTGA
1 TATATGGCTCTT-ATGAGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACATGGCTCACATGA
*
22585047 ACTTTCTGA
65 ACTTTCCGA
* **
22585056 TATATGG---TTATCCGAAGCTTATTGATTAATGGCTTTTCAGAGCTACTCGTTATTGGCTCACA
1 TATATGGCTCTTAT--G-AGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACA-TGGCTCACA
*
22585118 TGAGCTTTCCGA
62 TGAACTTTCCGA
22585130 -ATATGGCTCTTATGAGCTT
1 TATATGGCTCTTATGAGCTT
22585149 CTCGTTATAC
Statistics
Matches: 75, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
70 1 0.01
71 2 0.03
72 1 0.01
73 42 0.56
74 25 0.33
76 4 0.05
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (73 bp):
TATATGGCTCTTATGAGCTTATTGATTAATGGCTCTTCAGAGCTACTCGACATGGCTCACATGAA
CTTTCCGA
Found at i:22585180 original size:25 final size:25
Alignment explanation
Indices: 22585144--22585207 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 25
22585134 GGCTCTTATG
**
22585144 AGCTT-CTCGTTATACAGCCCGGATA
1 AGCTTCCT-GTTATACAGCCCACATA
* * *
22585169 AGCTTCCTGTTACACGGCTCACATA
1 AGCTTCCTGTTATACAGCCCACATA
*
22585194 AGCTTCATGTTATA
1 AGCTTCCTGTTATA
22585208 TGGCTCGAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (25 bp):
AGCTTCCTGTTATACAGCCCACATA
Found at i:22589522 original size:16 final size:16
Alignment explanation
Indices: 22589497--22589527 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22589487 TTTATTTTTA
22589497 GATTTCTTTTAAAATT
1 GATTTCTTTTAAAATT
*
22589513 GATTTTTTTTAAAAT
1 GATTTCTTTTAAAAT
22589528 ACAATAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (16 bp):
GATTTCTTTTAAAATT
Found at i:22593882 original size:2 final size:2
Alignment explanation
Indices: 22593875--22593916 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
22593865 TGGGGACTGG
22593875 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
22593917 AAGGGGAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22598756 original size:23 final size:23
Alignment explanation
Indices: 22598724--22598769 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
22598714 TTTCTCACAA
*
22598724 ACGCCGCTAAAGACCAAGACCTT
1 ACGCCACTAAAGACCAAGACCTT
22598747 ACGCCACTAAAGACCAAGACCTT
1 ACGCCACTAAAGACCAAGACCTT
22598770 TAGTGGCGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.35, G:0.15, T:0.13
Consensus pattern (23 bp):
ACGCCACTAAAGACCAAGACCTT
Found at i:22599192 original size:42 final size:41
Alignment explanation
Indices: 22599123--22599210 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 41
22599113 ACATATGCAA
* * * *
22599123 GGTAATAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
22599164 GGTAATAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAAT-AAGATACAATACATTTACTTAATCAAGGAAATCTT
22599206 -GTAAT
1 GGTAAT
22599211 GAACTCAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
41 11 0.27
42 30 0.73
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.36
Consensus pattern (41 bp):
GGTAATAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:22602417 original size:9 final size:9
Alignment explanation
Indices: 22602403--22602429 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22602393 TTATATATCC
22602403 ATATCAAAT
1 ATATCAAAT
22602412 ATATCAAAT
1 ATATCAAAT
22602421 ATATCAAAT
1 ATATCAAAT
22602430 GATTTAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
ATATCAAAT
Found at i:22602734 original size:21 final size:21
Alignment explanation
Indices: 22602710--22602749 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22602700 TGAAACCCTA
* *
22602710 AATCCTTAACTCTTAACCCAT
1 AATCCCTAACTCCTAACCCAT
22602731 AATCCCTAACTCCTAACCC
1 AATCCCTAACTCCTAACCC
22602750 CTAAATCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.28
Consensus pattern (21 bp):
AATCCCTAACTCCTAACCCAT
Found at i:22602807 original size:15 final size:15
Alignment explanation
Indices: 22602772--22602809 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
22602762 TCACAAACCT
22602772 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
22602786 T-AATCCATAATCCC
1 TAAATCCATAATCCC
22602800 TAAATCCATA
1 TAAATCCATA
22602810 TATAATCCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:22602992 original size:24 final size:24
Alignment explanation
Indices: 22602961--22603020 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
22602951 ATTATATATG
22602961 AAAT-TATTTAATATATAAATTAA
1 AAATATATTTAATATATAAATTAA
*
22602984 AAATATATTTAAAATATAAATTAA
1 AAATATATTTAATATATAAATTAA
* *
22603008 AAAAATAATTAAT
1 AAATATATTTAAT
22603021 CTAAACCCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATATATTTAATATATAAATTAA
Found at i:22603008 original size:12 final size:12
Alignment explanation
Indices: 22602968--22603009 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
22602958 ATGAAATTAT
*
22602968 TTAATATATAAA
1 TTAAAATATAAA
*
22602980 TTAAAA-ATATAT
1 TTAAAATATA-AA
22602992 TTAAAATATAAA
1 TTAAAATATAAA
22603004 TTAAAA
1 TTAAAA
22603010 AAATAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TTAAAATATAAA
Found at i:22603017 original size:12 final size:12
Alignment explanation
Indices: 22602973--22603019 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
22602963 ATTATTTAAT
22602973 ATATAAATTAAAA
1 ATAT-AATTAAAA
*
22602986 ATAT-ATTTAAA
1 ATATAATTAAAA
22602997 ATATAAATTAAAA
1 ATAT-AATTAAAA
*
22603010 AAATAATTAA
1 ATATAATTAA
22603020 TCTAAACCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 10 0.34
12 6 0.21
13 13 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
ATATAATTAAAA
Found at i:22603560 original size:41 final size:41
Alignment explanation
Indices: 22603503--22603747 Score: 312
Period size: 41 Copynumber: 5.8 Consensus size: 41
22603493 AAAATGTTTC
*
22603503 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCCAGCAT
1 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCAAGCAT
*
22603544 TAGCGGCGCTTTTCCAAAAACGCCACTAAAGCCCGCTAAAGCCCCAAGCAA
1 TAGCGGCGCTTTTCC-AAAA----AC----G-CCGCTAAAGCCCCAAGCAT
* *
22603595 TAGCGGCGCTTTCCCAAAAACGCCGCTAAAGACCCAAGCAT
1 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCAAGCAT
* * *
22603636 TAGCGGCGCTTATCCAAAAACGCCGCTAAATCCCCCAGCAT
1 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCAAGCAT
22603677 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCAAGCAT
1 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCAAGCAT
**
22603717 TAGCGGCGCTTTTTTAAAAACGCCGCTAAAG
1 TAGCGGCGCTTTTCCAAAAACGCCGCTAAAG
22603748 ACCCGAAAGG
Statistics
Matches: 179, Mismatches: 15, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
40 37 0.21
41 97 0.54
42 5 0.03
46 4 0.02
50 5 0.03
51 31 0.17
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.17
Consensus pattern (41 bp):
TAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCCAAGCAT
Found at i:22603601 original size:51 final size:51
Alignment explanation
Indices: 22603525--22603625 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
22603515 TCCAAAAACG
* * *
22603525 CCGCTAAAGCCCCCAGCATTAGCGGCGCTTTTCCAAAAACGCCACTAAAGC
1 CCGCTAAAGCCCCAAGCAATAGCGGCGCTTTCCCAAAAACGCCACTAAAGC
*
22603576 CCGCTAAAGCCCCAAGCAATAGCGGCGCTTTCCCAAAAACGCCGCTAAAG
1 CCGCTAAAGCCCCAAGCAATAGCGGCGCTTTCCCAAAAACGCCACTAAAG
22603626 ACCCAAGCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.31, C:0.37, G:0.19, T:0.14
Consensus pattern (51 bp):
CCGCTAAAGCCCCAAGCAATAGCGGCGCTTTCCCAAAAACGCCACTAAAGC
Found at i:22603842 original size:39 final size:39
Alignment explanation
Indices: 22603799--22603910 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 39
22603789 TTGTGGCGTT
*
22603799 TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGGCAA
1 TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGACAA
* * * *
22603838 TTTT-CAAAAGACGCCGCTAATGCTCCATCTTTAGTGACGA
1 TTTTCCATAA-ACGCCGCTAATGCT-CATTTTTAGCGACAA
* *
22603878 -TTTCCGTAAAACGCTGCTAATGCTCGATTTTTA
1 TTTTCCAT-AAACGCCGCTAATGCTC-ATTTTTA
22603911 CTGACGTTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
38 4 0.07
39 22 0.37
40 31 0.53
41 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (39 bp):
TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGACAA
Found at i:22611772 original size:15 final size:17
Alignment explanation
Indices: 22611719--22611770 Score: 77
Period size: 17 Copynumber: 3.0 Consensus size: 17
22611709 ATATATTATG
*
22611719 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
22611737 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
22611754 ATTTTATTATATTATAT
1 ATTTTATTAAATTATAT
22611771 TTAATAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 20 0.62
18 12 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:22611997 original size:44 final size:46
Alignment explanation
Indices: 22611930--22612022 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
22611920 TTACACATCT
*
22611930 ATTCCATTCAACCAAACACAAGAA-TA-CAATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCTATTCC
*
22611974 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCTATTCC
22612020 ATT
1 ATT
22612023 ACGCATCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 23 0.51
45 2 0.04
46 20 0.44
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.28
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCTATTCC
Found at i:22612025 original size:16 final size:16
Alignment explanation
Indices: 22612004--22612056 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
22611994 AGAATTACCT
22612004 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
22612020 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
*
22612036 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
22612052 ATTAC
1 ATTAC
22612057 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:22616163 original size:40 final size:40
Alignment explanation
Indices: 22615926--22616149 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
22615916 TGAATGATGT
* * * *
22615926 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
22615966 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
22616006 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
22616044 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
22616085 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22616125 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22616150 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.22
40 115 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22616171 original size:119 final size:119
Alignment explanation
Indices: 22615925--22616182 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
22615915 TTGAATGATG
* *
22615925 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* * **
22615990 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * * *
22616044 TCCGGGTTAAGTCCTGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCTCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGATC-CGAAGGCAT
* * * *
22616107 TTGTGTGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
22616164 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22616183 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 4 0.03
119 81 0.70
120 31 0.27
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:22620032 original size:12 final size:11
Alignment explanation
Indices: 22620017--22620061 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
22620007 AAGTAAAACC
*
22620017 TAATGTAAATAA
1 TAATATAAAT-A
22620029 TAATATAAATA
1 TAATATAAATA
22620040 TAATAATAAATA
1 TAAT-ATAAATA
22620052 TAATAATAAA
1 TAAT-ATAAA
22620062 CCAATTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 5 0.16
12 26 0.84
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (11 bp):
TAATATAAATA
Found at i:22620476 original size:88 final size:87
Alignment explanation
Indices: 22620380--22620551 Score: 211
Period size: 88 Copynumber: 2.0 Consensus size: 87
22620370 AGGATTATTG
* * * * * *
22620380 GCTTCGATCTGCTTCATTGCCAATACAAGAAAG-CAAGATCTGCTATTTTCAACCTGCTCCGCTG
1 GCTTCGATCTGCTTCACTGCCAATAC-AGAAAGACAAGATCTACAATCTTCAACCTACTCCACTG
22620444 CTGCTCAGGGAGATAAGGCTGGT
65 CTGCTCAGGGAGATAAGGCTGGT
* * ** *
22620467 GCTTCCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTGGACCTACTCCATTG
1 GCTT-CGATCTGCTTCACTGCCAATACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTG
*
22620532 TTGCTCAGGGAGATAAGGCT
65 CTGCTCAGGGAGATAAGGCT
22620552 AGTGGCTTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 9 0.13
88 62 0.87
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (87 bp):
GCTTCGATCTGCTTCACTGCCAATACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGC
TGCTCAGGGAGATAAGGCTGGT
Found at i:22620659 original size:132 final size:132
Alignment explanation
Indices: 22620519--22621209 Score: 999
Period size: 132 Copynumber: 5.2 Consensus size: 132
22620509 ACAATCTTGG
* * * * * *
22620519 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTGCTGTCTTAG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22620584 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22620649 CA
131 CA
* * * * *
22620651 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTTCGTACTACCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22620716 GAAGATAAAA-TCGCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22620780 CA
131 CA
* * * * *
22620782 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCCTAAATCTGCTTCTCTATTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22620847 GAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22620912 CA
131 CA
* * *
22620914 ACCTACTCCACTACTACTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * * *
22620979 GAAGATAAAATTTGCCATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22621044 CA
131 CA
* * *
22621046 ACCTACTCTAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22621111 GAAGAT-AAGTTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22621175 CA
131 CA
* * * *
22621177 GCCTACTCCAGTGTTGCTCAAGGAGATAAGGCT
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
22621210 GGAATCTTCG
Statistics
Matches: 496, Mismatches: 62, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
131 198 0.40
132 298 0.60
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (132 bp):
ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
CA
Found at i:22620792 original size:44 final size:44
Alignment explanation
Indices: 22620607--22621075 Score: 167
Period size: 44 Copynumber: 10.7 Consensus size: 44
22620597 GCCGTCTTCG
* *
22620607 ATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
* * * * * * * *
22620651 ACCTACTCCACTGCTGCTCAGGGAGATAAG-GCTAATGA-CTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ATAATTTTCA
* * ** * *
22620694 ATCTGCTTTCGTACTAC--CTT-GGGAAGATAAAATCGCT-GTCTTT-G
1 ATCTGC--TC-CACTACTGCTTAGGG-AGATAAGATCTATAAT-TTTCA
22620738 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
* * * * * * * **** *
22620782 ACCTACTCCACTGCTGCTCAAGGAGATAAG-GCTGGT-GGCCTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ATAATTTTCA
* * * * ** * *
22620825 ATCTGCTTCTCTATTGCCTT-GGGAAGATAAAAT-TCACCATCTTCG
1 ATCTGCTCCACTACTG-CTTAGGG-AGATAAGATCT-ATAATTTTCA
*
22620870 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
* * * * * *** *
22620914 ACCTACTCCACTACTACTCAGGGAGATAAG-GCTAGT-GGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-TAATTTTCA
* * *** *
22620957 ATCTGCTTCC-CTACTGTCTT-GGGAAGATAAAATTTGCCATTTTCG
1 ATCTGC-TCCACTACTG-CTTAGGG-AGATAAGATCTATAATTTTCA
* *
22621002 ATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
* * * * * *
22621046 ACCTACTCTAATGCTGCTCAGGGAGATAAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAG
22621076 GCTGGTGGCT
Statistics
Matches: 293, Mismatches: 104, Indels: 56
0.65 0.23 0.12
Matches are distributed among these distances:
41 5 0.02
42 2 0.01
43 61 0.21
44 180 0.61
45 41 0.14
46 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCA
Found at i:22620980 original size:263 final size:264
Alignment explanation
Indices: 22620519--22621209 Score: 1003
Period size: 263 Copynumber: 2.6 Consensus size: 264
22620509 ACAATCTTGG
* * * * * * *
22620519 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTGCTGTCTTAG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22620584 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTT
* *
22620649 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTTCGTACTACCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
** *
22620714 GGGAAGATAAAA-TCGCTGTCTTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
196 GGGAAGATAAAATTCGCCAT-TTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTATAAT
22620777 TTTCA
260 TTTCA
* * * * *
22620782 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCCTAAATCTGCTTCTCTATTGCCTTGG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22620847 GAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTT
* * * * **
22620912 CAACCTACTCCACTACTACTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
* *
22620977 GGGAAGATAAAATTTGCCATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATT
196 GGGAAGATAAAATTCGCCATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTATAATT
22621042 TTCA
261 TTCA
*
22621046 ACCTACTCTAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22621111 GAAGAT-AAGTTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TTGTAATTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTT-TAATTT
* * * *
22621174 TCAGCCTACTCCAGTGTTGCTCAAGGAGATAAGGCT
130 TCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
22621210 GGAATCTTCG
Statistics
Matches: 380, Mismatches: 45, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
262 2 0.01
263 266 0.70
264 112 0.29
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (264 bp):
ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTT
CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
GGGAAGATAAAATTCGCCATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTATAATT
TTCA
Found at i:22621276 original size:395 final size:394
Alignment explanation
Indices: 22620535--22621294 Score: 1058
Period size: 395 Copynumber: 1.9 Consensus size: 394
22620525 TCCATTGTTG
* *
22620535 CTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTGCTGTCTTAGGAAGATAAGATTCGCC
1 CTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAGGAAGATAAAATTCGCC
* * *
22620600 GTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGC
66 ATCTTCGATCTGCTCCACTACTGCCTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCAATGC
* *
22620665 TGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTTCGTACTACCTTGGGAAGATAAAATCGC
131 TGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAAATCGC
*
22620730 TGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTACTCCACTG
196 CGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTACTCCACTG
** * * * ** *
22620795 CTGCTCAAGGAGATAAGGCTGGTGGCCTAAATCTGCTTCTCTATTGCCTTGGGAAGATAAAATTC
261 CTGCTCAAGGAGATAAGGCTGGAAGCCTAAATCTACTTCTCTAGTGAC-TAAGAAGACAAAATTC
* * * *
22620860 ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTTAATTTTCAACCTACTCCAC
325 ACCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTTTAATTTTCAACCTACTCCAC
22620925 TACTA
390 TACTA
* * *
22620930 CTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTTGGGAAGATAAAATTTGCC
1 CTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAGGAAGATAAAATTCGCC
* * *
22620995 ATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCTAATGC
66 ATCTTCGATCTGCTCCACTACTGCCTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCAATGC
** * * **
22621060 TGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGGGAAGATAAGTTCGC
131 TGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAAATCGC
* * * *
22621125 CGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTCAGCCTACTCCAGTG
196 CGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTACTCCACTG
* * * ** *
22621190 TTGCTCAAGGAGATAAGGCTGGAATCTTCGATCTACTTCGCTGCTAGT-AC-AAGAAGACAAGA-
261 CTGCTCAAGGAGATAAGGCTGGAAGCCTAAATCTACTT--CT-CTAGTGACTAAGAAGACAAAAT
* *
22621252 TCTGCTATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
323 TC-ACCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
22621295 GCTGATTATC
Statistics
Matches: 317, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
394 2 0.01
395 308 0.97
397 3 0.01
398 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (394 bp):
CTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAGGAAGATAAAATTCGCC
ATCTTCGATCTGCTCCACTACTGCCTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCAATGC
TGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAAATCGC
CGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTACTCCACTG
CTGCTCAAGGAGATAAGGCTGGAAGCCTAAATCTACTTCTCTAGTGACTAAGAAGACAAAATTCA
CCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTTTAATTTTCAACCTACTCCACT
ACTA
Found at i:22621294 original size:263 final size:261
Alignment explanation
Indices: 22620519--22621294 Score: 961
Period size: 263 Copynumber: 2.9 Consensus size: 261
22620509 ACAATCTTGG
* * * * * * *
22620519 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTGCTGTCTTAG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22620584 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAG-TTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTT
*
22620649 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT-AATGACTTAAATCTGCTTTCG-TACTACC
130 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGAAT--CTTAAATCTGC-TTCGCTACTA-G
* * *
22620712 TTGGGAAGATAAAATC-GCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAA
191 TCGGGAAGATAAAATCTGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAA
22620776 TTTTCA
256 TTTTCA
* * * * *
22620782 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCCTAAATCTGCTTCTCTATTGCCTTGG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22620847 GAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTT-TAATTT
66 GAAGAT-AAGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TTGTAATTT
* * * *
22620911 TCAACCTACTCCACTACTACTCAGGGAGATAAGGCT-AGTGGCTTAAATCTGCTTCCCTACT-GT
129 TCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGAAT--CTTAAATCTGCTTCGCTACTAGT
* * * * *
22620974 CTTGGGAAGATAAAATTTGCCATTTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTA
192 C--GGGAAGATAAAATCTGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATA
22621039 ATTTTCA
255 ATTTTCA
*
22621046 ACCTACTCTAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
1 ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
*
22621111 GAAGATAAGTTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTC
66 GAAGATAAGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTC
* * * * ** * * *
22621176 AGCCTACTCCAGTGTTGCTCAAGGAGATAAGGCTGGAATCTTCGATCTACTTCGCTGCTAGTACA
131 AACCTACTCCACTGCTGCTCAGGGAGATAAGGCT-GAATCTTAAATCTGCTTCGCTACTAGT-CG
* * * * * * *
22621241 AGAAGACAAGATCTGCTATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
194 GGAAGATAAAATCTGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
22621295 GCTGATTATC
Statistics
Matches: 438, Mismatches: 64, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
261 1 0.00
262 5 0.01
263 311 0.71
264 118 0.27
265 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (261 bp):
ACCTACTCCAATGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
GAAGATAAGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTC
AACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGAATCTTAAATCTGCTTCGCTACTAGTCGGG
AAGATAAAATCTGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTC
A
Found at i:22630328 original size:50 final size:50
Alignment explanation
Indices: 22630150--22630393 Score: 256
Period size: 50 Copynumber: 4.8 Consensus size: 50
22630140 GATCATAACA
* ** * *
22630150 TGCCAAAC-CCATGTCCCAGACATGGTCTTACGTGGGATGTTCTTATATCGG
1 TGCC-AACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* ** * ** * *
22630201 TGCCCATACCATGTCCCAGACATAGTCTTACATGGGATGTTCTTATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
22630252 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* ***
22630302 TGCCAACGCCGTGTCCCAGGTGTGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
22630352 TGCCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22630394 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
50 89 0.53
51 78 0.47
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22638585 original size:16 final size:16
Alignment explanation
Indices: 22638561--22638630 Score: 122
Period size: 16 Copynumber: 4.4 Consensus size: 16
22638551 TTTGGTTCGC
*
22638561 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
22638577 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
22638593 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
*
22638609 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
22638625 TGTAAT
1 TGTAAT
22638631 AGCAAATCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:22638675 original size:45 final size:44
Alignment explanation
Indices: 22638616--22638706 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
22638606 AGGTGTAATG
*
22638616 GAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATGCAATA
1 GAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAATGCAATA
* *** *
22638661 GAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAATGGAATA
1 GAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAATGCAATA
22638705 GA
1 GA
22638707 GGTGCAATAG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 24 0.60
45 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (44 bp):
GAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAATGCAATA
Found at i:22638881 original size:16 final size:16
Alignment explanation
Indices: 22638844--22638885 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22638834 TTAATCATAT
*
22638844 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
22638860 TT-AAATATATTATAA
1 TTAAAATATATTATAA
22638875 TTAAAATATAT
1 TTAAAATATAT
22638886 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:22638892 original size:14 final size:15
Alignment explanation
Indices: 22638853--22638894 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22638843 TTTAAACATA
*
22638853 ATTATTATTAAATAT
1 ATTATAATTAAATAT
22638868 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
22638882 A-TATAATTTAATA
1 ATTATAATTAAATA
22638895 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:22638962 original size:76 final size:75
Alignment explanation
Indices: 22638882--22639122 Score: 227
Period size: 76 Copynumber: 3.1 Consensus size: 75
22638872 TAATTAAAAT
* *
22638882 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATAAT-AATATTCTTATATGAATTTAATAAAATCATAATATAT
*
22638947 GATACTATAAA
65 AATACTATAAA
* * * * * * * * ** *
22638958 ATATAAATTAACATAATTATTATTAA-ATATATTATAAT-TAAAATATATAATTTAAT-AAAATA
1 ATATAATTTAATAAAATTCTTAATAATA-ATATTCTTATAT-GAAT-T-TAATAAAATCATAATA
* *
22639020 TATAATTAATAAAAA
62 TATAA-TACTATAAA
*
22639035 TATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATA
1 -ATATAATTTAATAAAATTCTTAATAAT-AATATTCTTATATGAATTTAATAAAATCATAATATA
*
22639100 TAATACTATATA
64 TAATACTATAAA
22639112 ATATAATTTAA
1 ATATAATTTAA
22639123 AATAATTATT
Statistics
Matches: 125, Mismatches: 30, Indels: 20
0.71 0.17 0.11
Matches are distributed among these distances:
74 2 0.02
75 11 0.09
76 42 0.34
77 26 0.21
78 31 0.25
79 11 0.09
80 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (75 bp):
ATATAATTTAATAAAATTCTTAATAATAATATTCTTATATGAATTTAATAAAATCATAATATATA
ATACTATAAA
Found at i:22638991 original size:15 final size:15
Alignment explanation
Indices: 22638976--22639043 Score: 55
Period size: 17 Copynumber: 4.2 Consensus size: 15
22638966 TAACATAATT
*
22638976 ATTATTAAATATATT
1 ATTATTAAATATATA
*
22638991 ATAATTAAAATATATA
1 ATTATT-AAATATATA
*
22639007 ATTTAATAAAATATATA
1 A-TT-ATTAAATATATA
*
22639024 ATTAATAAAAATATATA
1 ATT-AT-TAAATATATA
22639041 ATT
1 ATT
22639044 TAATAAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
15 5 0.11
16 14 0.31
17 24 0.53
18 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTATTAAATATATA
Found at i:22638998 original size:30 final size:30
Alignment explanation
Indices: 22638953--22639164 Score: 105
Period size: 34 Copynumber: 6.6 Consensus size: 30
22638943 ATATGATACT
* *
22638953 ATAAAATATA-AATTAACATA-ATTA-TTA
1 ATAAAATATATAATTAAAATATATAATTTA
*
22638980 TTAAATATATTATAATTAAAATATATAATTTA
1 ATAAA-ATA-TATAATTAAAATATATAATTTA
22639012 ATAAAATATATAATTAATAAAAATATATAATTTA
1 ATAAAATATATAA-T--T-AAAATATATAATTTA
*
22639046 ATAAAAT-TCTTAATATTAAATATTCTTATATGAATTTA
1 ATAAAATAT-AT-A-ATTAAA-A----TATAT-AATTTA
* *
22639084 ATAAAATCATA-ATATATAATACTATATAATATA
1 ATAAAAT-ATATA-AT-TAA-AATATATAATTTA
* *
22639117 ATTTAAAATA-ATTATTATTAA-ATATAATTTA
1 A--TAAAATATATAATTA-AAATATATAATTTA
22639148 ATAAAATATATAATTAA
1 ATAAAATATATAATTAA
22639165 TAAAATTCTT
Statistics
Matches: 144, Mismatches: 14, Indels: 52
0.69 0.07 0.25
Matches are distributed among these distances:
27 4 0.03
28 3 0.02
29 9 0.06
30 20 0.14
31 17 0.12
32 13 0.09
33 13 0.09
34 29 0.20
35 8 0.06
36 1 0.01
37 9 0.06
38 16 0.11
39 1 0.01
40 1 0.01
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
ATAAAATATATAATTAAAATATATAATTTA
Found at i:22639009 original size:34 final size:34
Alignment explanation
Indices: 22638982--22639169 Score: 131
Period size: 33 Copynumber: 5.6 Consensus size: 34
22638972 AATTATTATT
* *
22638982 AAATATATTA-TAATTAAAATATATAATTTAATA
1 AAATATATAATTAATAAAAATATATAATTTAATA
22639015 AAATATATAATTAATAAAAATATATAATTTAATA
1 AAATATATAATTAATAAAAATATATAATTTAATA
* * *
22639049 AAAT-TCTTAA-TATTAAATATTCTTATATGAATTTAATA
1 AAATAT-ATAATTAATAAA-A---ATATAT-AATTTAATA
* * * * *
22639087 AAAT-CATAA-TATATAATACTATATAATATAATT
1 AAATATATAATTA-ATAAAAATATATAATTTAATA
* * **
22639120 TAA-A-ATAATTATTATTAA-ATATAATTTAATA
1 AAATATATAATTAATAAAAATATATAATTTAATA
22639151 AAATATATAATTAATAAAA
1 AAATATATAATTAATAAAA
22639170 TTCTTAATAT
Statistics
Matches: 121, Mismatches: 22, Indels: 24
0.72 0.13 0.14
Matches are distributed among these distances:
31 13 0.11
32 9 0.07
33 37 0.31
34 35 0.29
37 11 0.09
38 16 0.13
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (34 bp):
AAATATATAATTAATAAAAATATATAATTTAATA
Found at i:22639086 original size:38 final size:37
Alignment explanation
Indices: 22639035--22639216 Score: 135
Period size: 37 Copynumber: 4.7 Consensus size: 37
22639025 TTAATAAAAA
22639035 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
*
22639072 TATATGAATTTAATAAAA-TCATAATA-TATAATA--C-
1 TATAT-AATTTAATAAAATTCTTAATATTA-AATATTCT
* ** *
22639106 TATATAATATAATTTAAAATAATTATTATTAAATATAAT-T
1 TATATAATTTAA--TAAAATTCTTAATATTAAATAT--TCT
22639146 TAATAAAATATATAATTAATAAAATTCTTAATATTAAATATTCT
1 T-AT---ATA-AT--TTAATAAAATTCTTAATATTAAATATTCT
*
22639190 TATATGAATTTAATAAAA-TCATAATAT
1 TATAT-AATTTAATAAAATTCTTAATAT
22639217 ATAATACTAT
Statistics
Matches: 114, Mismatches: 11, Indels: 40
0.69 0.07 0.24
Matches are distributed among these distances:
33 6 0.05
34 5 0.04
35 6 0.05
36 10 0.09
37 26 0.23
38 21 0.18
40 5 0.04
41 3 0.03
43 3 0.03
44 5 0.04
45 21 0.18
47 3 0.03
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATATTAAATATTCT
Found at i:22639164 original size:16 final size:17
Alignment explanation
Indices: 22638996--22639170 Score: 109
Period size: 17 Copynumber: 10.4 Consensus size: 17
22638986 ATATTATAAT
22638996 TAAAATATATAATTTAA
1 TAAAATATATAATTTAA
22639013 TAAAATATATAA-TTAA
1 TAAAATATATAATTTAA
22639029 TAAAAATATATAATTTAA
1 T-AAAATATATAATTTAA
*
22639047 TAAAAT-TCTTAATATTAAA
1 TAAAATAT-ATAAT-TT-AA
***
22639066 TATTCTTATATGAATTTAA
1 TA-AAATATAT-AATTTAA
* *
22639085 TAAAAT-CATAATAT-A
1 TAAAATATATAATTTAA
* *
22639100 TAATACTATATAATATAA
1 TAA-AATATATAATTTAA
*
22639118 TTTAAAATA-ATTA-TT-A
1 --TAAAATATATAATTTAA
*
22639134 T-TAA-ATATAATTTAA
1 TAAAATATATAATTTAA
22639149 TAAAATATATAA-TTAA
1 TAAAATATATAATTTAA
22639165 TAAAAT
1 TAAAAT
22639171 TCTTAATATT
Statistics
Matches: 122, Mismatches: 18, Indels: 37
0.69 0.10 0.21
Matches are distributed among these distances:
12 1 0.01
13 5 0.04
14 3 0.02
15 6 0.05
16 25 0.20
17 48 0.39
18 12 0.10
19 11 0.09
20 7 0.06
21 4 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:22639166 original size:26 final size:25
Alignment explanation
Indices: 22639110--22639171 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
22639100 TAATACTATA
*
22639110 TAATATAATTTAAAATAATTATTAT
1 TAATATAATTTAAAATAATTATAAT
22639135 TAAATATAATTTAATAA-AATATATAAT
1 T-AATATAATTTAA-AATAAT-TATAAT
*
22639162 TAATAAAATT
1 TAATATAATT
22639172 CTTAATATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 1 0.03
26 23 0.72
27 8 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATATAATTTAAAATAATTATAAT
Found at i:22639175 original size:118 final size:119
Alignment explanation
Indices: 22639019--22639234 Score: 409
Period size: 118 Copynumber: 1.8 Consensus size: 119
22639009 TTAATAAAAT
22639019 ATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTA
1 ATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTA
22639084 ATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
66 ATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
22639138 ATATAATTTAAT-AAAATATATAA-TTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
1 ATATAA-TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
22639201 AATAAAATCATAATATATAATACTATATAATATA
65 AATAAAATCATAATATATAATACTATATAATATA
22639235 GATTAATAAT
Statistics
Matches: 96, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
118 74 0.77
119 17 0.18
120 5 0.05
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.43
Consensus pattern (119 bp):
ATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTA
ATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
Found at i:22639182 original size:154 final size:154
Alignment explanation
Indices: 22638862--22639170 Score: 491
Period size: 154 Copynumber: 2.0 Consensus size: 154
22638852 AATTATTATT
* * *
22638862 AAATATATTA-TAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAA
1 AAATATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAA
* * * *
22638926 TTTACTCAAATCATAATATATGATACTATAAAATATAAATTAACATAATTATTATTAAATATATT
66 TTTAATAAAATCATAATATATAATACTATAAAATATAAATTAAAATAATTATTATTAAATATATT
22638991 ATAATTAAAATATATAATTTAATA
131 ATAATTAAAATATATAATTTAATA
*
22639015 AAATATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAA
1 AAATATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAA
* *
22639080 TTTAATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAAATATAAT
66 TTTAATAAAATCATAATATATAATACTATAAAATATAAATTAAAATAATTATTATTAAATAT-AT
22639145 T-TAA-TAAAATATATAA-TTAATA
130 TATAATTAAAATATATAATTTAATA
22639167 AAAT
1 AAAT
22639171 TCTTAATATT
Statistics
Matches: 144, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
152 10 0.07
153 21 0.15
154 110 0.76
155 3 0.02
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (154 bp):
AAATATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAA
TTTAATAAAATCATAATATATAATACTATAAAATATAAATTAAAATAATTATTATTAAATATATT
ATAATTAAAATATATAATTTAATA
Found at i:22647712 original size:12 final size:11
Alignment explanation
Indices: 22647697--22647736 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
22647687 AAGTAAAACC
*
22647697 TAATGTAAATAA
1 TAATATAAAT-A
22647709 TAATATAAATA
1 TAATATAAATA
22647720 TAATAATAAATA
1 TAAT-ATAAATA
22647732 TAATA
1 TAATA
22647737 ATAATAAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 6 0.23
12 20 0.77
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
TAATATAAATA
Found at i:22647737 original size:12 final size:12
Alignment explanation
Indices: 22647702--22647740 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
22647692 AAACCTAATG
22647702 TAAATAATAAT-A
1 TAAAT-ATAATAA
22647714 TAAATATAATAA
1 TAAATATAATAA
22647726 TAAATATAATAA
1 TAAATATAATAA
22647738 TAA
1 TAA
22647741 TAAACCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 5 0.19
12 21 0.81
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAATATAATAA
Found at i:22652747 original size:34 final size:33
Alignment explanation
Indices: 22652704--22652784 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 33
22652694 TTCTGATATG
*
22652704 ATATGACATTTTGATATT-ATATACGTTCCTGAAA
1 ATATGACATTCTGAT-TTGATATACGTT-CTGAAA
* * *
22652738 ATATGACATTCTGATTTGGTATATGTTTTGAAA
1 ATATGACATTCTGATTTGATATACGTTCTGAAA
22652771 ATATGACATTCTGA
1 ATATGACATTCTGA
22652785 CCTGACATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (33 bp):
ATATGACATTCTGATTTGATATACGTTCTGAAA
Found at i:22652795 original size:33 final size:33
Alignment explanation
Indices: 22652733--22652798 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
22652723 TATACGTTCC
** **
22652733 TGAAAATATGACATTCTGATTTGGTATATGTTT
1 TGAAAATATGACATTCTGACCTGACATATGTTT
22652766 TGAAAATATGACATTCTGACCTGACATATGTTT
1 TGAAAATATGACATTCTGACCTGACATATGTTT
22652799 CTGTTAATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (33 bp):
TGAAAATATGACATTCTGACCTGACATATGTTT
Found at i:22654967 original size:43 final size:43
Alignment explanation
Indices: 22654890--22654979 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
22654880 TAGATGCCGT
* *
22654890 TAAAGAACATGACCTTTAGTGGCTCTTTTATCACAAACGTC-GC
1 TAAAGAACATGACCTTTAGCGACTCTTTTATCACAAACG-CAGC
*
22654933 TAAAGAACATGACCTTTAGCGACGT-TTTTTTCACAAACGCAGC
1 TAAAGAACATGACCTTTAGCGAC-TCTTTTATCACAAACGCAGC
22654976 TAAA
1 TAAA
22654980 AATACCGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 1 0.02
43 40 0.95
44 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (43 bp):
TAAAGAACATGACCTTTAGCGACTCTTTTATCACAAACGCAGC
Found at i:22657031 original size:9 final size:9
Alignment explanation
Indices: 22657017--22657107 Score: 71
Period size: 9 Copynumber: 10.1 Consensus size: 9
22657007 GACCAAGATT
22657017 TAAGTTATG
1 TAAGTTATG
22657026 TAAGTTATG
1 TAAGTTATG
22657035 TGAA-TTATG
1 T-AAGTTATG
22657044 TAAGTTGAAT-
1 TAAGTT--ATG
* * *
22657054 TATGATATA
1 TAAGTTATG
22657063 TAAGTTAT-
1 TAAGTTATG
*
22657071 AAAGTTATG
1 TAAGTTATG
*
22657080 TATGTTATG
1 TAAGTTATG
*
22657089 TGAGTTATG
1 TAAGTTATG
*
22657098 TATGTTATG
1 TAAGTTATG
22657107 T
1 T
22657108 GGAAATTAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
8 11 0.17
9 46 0.71
10 6 0.09
11 2 0.03
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:22657289 original size:111 final size:118
Alignment explanation
Indices: 22657164--22657663 Score: 497
Period size: 122 Copynumber: 4.2 Consensus size: 118
22657154 AAATTGAGTA
* * *
22657164 ATTAGTAATGAATTTGAAATATAGGTATTTCA-A-CAT-CT-ATA-A-TTATGTA-TAAAATTTA
1 ATTAGTAATGAATTTGAAATATA-G-ATTACATACCATACTAATATAGTTATATATTAAAATATA
* ** *
22657222 -GATTT-GTATTTAGTATTTCAACATTTATAATTATGTATAAAATTT-AAAAAGTT
64 GGATTTAATATTTAAAATAT-AACATTTATAATTATGTATAAAATTTAAAAAAGTT
22657275 ATTAGTAATGAATTTGAAATATAGATTACATATCCATACTAATATAGGTTATATATTTAAAATAT
1 ATTAGTAATGAATTTGAAATATAGATTACATA-CCATACTAATATA-GTTATATA-TTAAAATAT
* * *
22657340 AGGTTTTAATATTTAAAATATAATATTTATAATTATGTTTAAAATTTAAAAAAAGTT
63 AGGATTTAATATTTAAAATATAACATTTATAATTATGTATAAAATTT-AAAAAAGTT
* * * * *
22657397 ATTAGTAATGAATTTGAAATATATG-TAATATATCCAGACTAATATAGGTGATATATTTAAAAAA
1 ATTAGTAATGAATTTGAAATATA-GATTACATA-CCATACTAATATA-GTTATATA-TTAAAATA
* * ** *
22657461 TAGGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTTAAAATTT-AAAAAGTT
62 TAGGATTTAATATTT-AAAATATAACATTTATAATTATGTATAAAATTTAAAAAAGTT
* *
22657518 ATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATAT
1 ATTAGTAATGAATTTGAAATATAGATTACATA-CCATACTAATATA-GTTATATATT-AAAATAT
* * * * *
22657583 AGG-TTTAAAGTTATTTAAAATATAATAATTATAATTATTTTTAAAATTT-AAAAACTT
63 AGGATTT-AA--TATTTAAAATATAACATTTATAATTATGTATAAAATTTAAAAAAGTT
22657640 ATTAGTAATGAATTTGAAATATAG
1 ATTAGTAATGAATTTGAAATATAG
22657664 GTTATTTATT
Statistics
Matches: 340, Mismatches: 28, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
109 5 0.01
110 2 0.01
111 23 0.07
112 3 0.01
113 2 0.01
114 3 0.01
115 1 0.00
117 6 0.02
119 8 0.02
120 34 0.10
121 78 0.23
122 139 0.41
123 36 0.11
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.42
Consensus pattern (118 bp):
ATTAGTAATGAATTTGAAATATAGATTACATACCATACTAATATAGTTATATATTAAAATATAGG
ATTTAATATTTAAAATATAACATTTATAATTATGTATAAAATTTAAAAAAGTT
Found at i:22657340 original size:20 final size:21
Alignment explanation
Indices: 22657315--22657361 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
22657305 TATCCATACT
22657315 AATATAGGTTAT-ATATTTAA
1 AATATAGGTTATAATATTTAA
*
22657335 AATATAGGTTTTAATATTTAA
1 AATATAGGTTATAATATTTAA
22657356 AATATA
1 AATATA
22657362 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 11 0.44
21 14 0.56
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (21 bp):
AATATAGGTTATAATATTTAA
Found at i:22657465 original size:20 final size:21
Alignment explanation
Indices: 22657440--22657480 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22657430 CCAGACTAAT
22657440 ATAGGTGAT-ATATTTAAAAA
1 ATAGGTGATAATATTTAAAAA
**
22657460 ATAGGTTTTAATATTTAAAAA
1 ATAGGTGATAATATTTAAAAA
22657481 TATAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (21 bp):
ATAGGTGATAATATTTAAAAA
Done.