Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 81 of 199
Found at i:22867672 original size:21 final size:21
Alignment explanation
Indices: 22867646--22867716 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
22867636 CTACAACTTA
* *
22867646 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
22867667 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
22867688 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
22867709 AAGCAGAG
1 AAGCAGAG
22867717 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:22867959 original size:14 final size:14
Alignment explanation
Indices: 22867940--22867973 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
22867930 ATTGCTATTG
22867940 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
22867954 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
22867968 TTTGCT
1 GTTGCT
22867974 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:22868140 original size:43 final size:42
Alignment explanation
Indices: 22868026--22868412 Score: 397
Period size: 42 Copynumber: 9.2 Consensus size: 42
22868016 CAAAAATAGT
* * *
22868026 GGCGTTTTTGTATAAAAGCGCCACTAAAGAACATGTTCTTTTGC
1 GGCGTTTTT-T-TAAAAACGCCGCTAAAGAACATGTTCTTTAGC
* * *
22868070 GGCG--TTTGTAAAAATGCCACTAAAGAACATGTTCTTTAGC
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
***** *
22868110 GGCGATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGC
1 GGCG-TTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
* *
22868153 GGCGTTTTCCCTT--AAGCGCCGCTAAAGAACATGTTCTTTAGC
1 GGCGTTTT--TTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
** * * *
22868195 GGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGT
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
* *
22868237 GGCATTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAGC
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
* * *
22868279 GGCGTTTTTTT-TAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
** * *
22868320 GGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
** * * *
22868362 GGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAAC
1 GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
22868404 GGCGTTTTT
1 GGCGTTTTT
22868413 GTTTGTAAAC
Statistics
Matches: 301, Mismatches: 34, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
40 35 0.12
41 38 0.13
42 192 0.64
43 32 0.11
44 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (42 bp):
GGCGTTTTTTTAAAAACGCCGCTAAAGAACATGTTCTTTAGC
Found at i:22868191 original size:42 final size:42
Alignment explanation
Indices: 22868127--22868412 Score: 443
Period size: 42 Copynumber: 6.8 Consensus size: 42
22868117 AGAAAAAAAA
**
22868127 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC-TAAG
*
22868169 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* * * *
22868211 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAG
*
22868253 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT-TAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
22868294 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
22868336 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
22868378 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
22868413 GTTTGTAAAC
Statistics
Matches: 226, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
41 38 0.17
42 182 0.81
43 6 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:22868293 original size:125 final size:125
Alignment explanation
Indices: 22868124--22868412 Score: 463
Period size: 125 Copynumber: 2.3 Consensus size: 125
22868114 ATTAGAAAAA
* *
22868124 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGTTC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TCTTAAGCGCCGCTAAAGAACATGATC
* *
22868189 TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-
65 TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTT-CT
* *
22868250 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTAAGCGCCGCTAAAGAACATGATCT
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTAAGCGCCGCTAAAGAACATGATCT
*
22868315 TTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
66 TTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCT
* * *
22868375 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
22868413 GTTTGTAAAC
Statistics
Matches: 152, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
124 1 0.01
125 115 0.76
126 36 0.24
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (125 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTAAGCGCCGCTAAAGAACATGATCT
TTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCT
Found at i:22868771 original size:25 final size:25
Alignment explanation
Indices: 22868731--22868789 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
22868721 TGAAAATGGG
*
22868731 GAGTTTTGGGTATTAGTTAAACGAT
1 GAGTTTTGGATATTAGTTAAACGAT
* * *
22868756 GAGTTTTGGATGTTAGTTAGACGGT
1 GAGTTTTGGATATTAGTTAAACGAT
22868781 GAGTTTTGG
1 GAGTTTTGG
22868790 GGTGTTAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.03, G:0.34, T:0.41
Consensus pattern (25 bp):
GAGTTTTGGATATTAGTTAAACGAT
Found at i:22870862 original size:25 final size:25
Alignment explanation
Indices: 22870792--22870864 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
22870782 GTTTTTCAGT
*
22870792 TAACACCTCAAAACTCACCGTCTAAC
1 TAACACC-CAAAACTCACCGTTTAAC
*
22870818 TAACATCCAAAACTCACCGTTTAAC
1 TAACACCCAAAACTCACCGTTTAAC
*
22870843 TAATACCCAAAACTTC-CCGTTT
1 TAACACCCAAAAC-TCACCGTTT
22870865 TCATTAACTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 34 0.81
26 8 0.19
ACGTcount: A:0.37, C:0.34, G:0.04, T:0.25
Consensus pattern (25 bp):
TAACACCCAAAACTCACCGTTTAAC
Found at i:22890092 original size:3 final size:3
Alignment explanation
Indices: 22890032--22890077 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
22890022 ATTAATTGGT
22890032 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
22890078 ATGTACATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22901490 original size:47 final size:47
Alignment explanation
Indices: 22901421--22901511 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
22901411 AAGGAGAAGG
* *
22901421 GACCAAGGTGAAAACCCGCAAAGGGCACTTTGATTCTAAAAAAAAAA
1 GACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAAAAAA
* *
22901468 GACCAATGTGAAAACCCGCAAAGGGCGCTTTGAGTCCAAAAAAA
1 GACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAAA
22901512 TAAAAAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (47 bp):
GACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAAAAAA
Found at i:22903073 original size:132 final size:132
Alignment explanation
Indices: 22902929--22903381 Score: 640
Period size: 132 Copynumber: 3.4 Consensus size: 132
22902919 GATAGAAGAT
* * * *
22902929 ACCAACCTTATC-TCCTTGAGCAACAATAGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAG
1 ACCAGCCTTATCTTCC-TGAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAG
** * *
22902993 CAGTAGTGGAGCAGATCAAAGACGGTGAATTTTATCTTCCCAAGGCAGTAGGGAAGTAGATTTAA
65 CAGTAGTGGAGCAGATCAAAGACGGAAAATTTTATCTTTCCAAGGCAGTAGGGAAGCAGATTTAA
22903058 GCC
130 GCC
*
22903061 ACCAGCCTTATCTTCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
1 ACCAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
* * *
22903126 AGTAGTGGAGCAGATCAAAGACGAAAAATTTTATCTTTCCAATGAAGTAGGGAAGCAGATTTAAG
66 AGTAGTGGAGCAGATCAAAGACGGAAAATTTTATCTTTCCAAGGCAGTAGGGAAGCAGATTTAAG
*
22903191 TC
131 CC
* * * *
22903193 ACTAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATCTTATCTCCCTAAGC
1 ACCAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
* * * *
22903258 AGTAGTGGAGCAGAT-AGAAGACGGCAAATCTTATCTTTCCAAGACAGTAGGGAAGCAGATTGAA
66 AGTAGTGGAGCAGATCA-AAGACGGAAAATTTTATCTTTCCAAGGCAGTAGGGAAGCAGATTTAA
22903322 GCC
130 GCC
* * * **
22903325 ACTAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTCGAAGATTGTAGATCTTATCT
1 ACCAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCT
22903382 TCCTGTACTG
Statistics
Matches: 289, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 285 0.99
133 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
ACCAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCAAAGACGGAAAATTTTATCTTTCCAAGGCAGTAGGGAAGCAGATTTAAG
CC
Found at i:22903289 original size:44 final size:44
Alignment explanation
Indices: 22902979--22903293 Score: 142
Period size: 44 Copynumber: 7.2 Consensus size: 44
22902969 AATTACAGAC
***
22902979 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AAGACGGTGAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGAT-AGAAGACGACAAAT
* * ** * * **
22903023 TTTATCTTCCC-AAGGCAGTAG-GGAAGTAGATTTAAG-CCACCAGC
1 CTTATC-TCCCTAA-GCAGTAGTGG-AGCAGATAGAAGACGACAAAT
* * * * * * * ** *
22903067 CTTATCTTCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGACAAAT
*
22903111 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCA-AAGACGAAAAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGAT-AGAAGACGACAAAT
* * * ** * * **
22903155 TTTATCTTTCC-AATGAAGTAG-GGAAGCAGATTTAAGTC-ACTAGC
1 CTTATC-TCCCTAA-GCAGTAGTGG-AGCAGATAGAAGACGACAAAT
* * * * * ** *
22903199 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGACAAAT
*
22903243 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGGCAAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGACAAAT
22903287 CTTATCT
1 CTTATCT
22903294 TTCCAAGACA
Statistics
Matches: 189, Mismatches: 67, Indels: 30
0.66 0.23 0.10
Matches are distributed among these distances:
43 33 0.17
44 116 0.61
45 40 0.21
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGACGACAAAT
Found at i:22903463 original size:88 final size:87
Alignment explanation
Indices: 22903309--22903499 Score: 197
Period size: 88 Copynumber: 2.2 Consensus size: 87
22903299 AGACAGTAGG
* * * * * * * *
22903309 GAAGCAGATTGAAGCCACTAGCCTTATCTTCCTGAGCAACAGTGGAGTAGGTCGAAGATTGTAGA
1 GAAGCAGATCGAAG-CACCAGCCTTATCTCCCTGAGCAACAGCGAAGCAGGTCGAAGATAGCAGA
* * *
22903374 TCTT-ATCTTCCTGTACTGGCAGT
65 TCTTGCT-TTCCTGTACTGCCAAT
* *
22903397 GAAGCAGATCGGAAGCACCAGCCTTATCTCCCTGAGCAGCAGCGAAGCAGGTTGAA-AGTAGCAG
1 GAAGCAGATC-GAAGCACCAGCCTTATCTCCCTGAGCAACAGCGAAGCAGGTCGAAGA-TAGCAG
* *
22903461 ATCTTGCTTTCTTGTATTGCCAAT
64 ATCTTGCTTTCCTGTACTGCCAAT
22903485 GAAGCAGATCGAAGC
1 GAAGCAGATCGAAGC
22903500 CAATAATCCT
Statistics
Matches: 85, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
87 6 0.07
88 74 0.87
89 5 0.06
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (87 bp):
GAAGCAGATCGAAGCACCAGCCTTATCTCCCTGAGCAACAGCGAAGCAGGTCGAAGATAGCAGAT
CTTGCTTTCCTGTACTGCCAAT
Found at i:22911290 original size:24 final size:25
Alignment explanation
Indices: 22911256--22911361 Score: 151
Period size: 25 Copynumber: 4.3 Consensus size: 25
22911246 GGACACACCA
* *
22911256 CAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTGTTATT
22911281 CAGCT-GCATGAGCTTCCTGTTATT
1 CAGCTCGCATGAGCTTCCTGTTATT
* *
22911305 TAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCTGTTATT
* *
22911330 CAGCTCGCATGAGATTCCCGTTATT
1 CAGCTCGCATGAGCTTCCTGTTATT
22911355 CAGCTCG
1 CAGCTCG
22911362 GAAAAGCTGA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
24 21 0.28
25 53 0.72
ACGTcount: A:0.18, C:0.29, G:0.21, T:0.32
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCTGTTATT
Found at i:22911333 original size:49 final size:50
Alignment explanation
Indices: 22911256--22911361 Score: 151
Period size: 49 Copynumber: 2.1 Consensus size: 50
22911246 GGACACACCA
* * *
22911256 CAGCTCGCATGAGCTTCCTGATACTCAGCT-GCATGAGCTTCCTGTTATT
1 CAGCTCGCATGAGCTTCCCGATACTCAGCTCGCATGAGATTCCCGTTATT
* * *
22911305 TAGCTCGCATGAGCTTCCCGTTATTCAGCTCGCATGAGATTCCCGTTATT
1 CAGCTCGCATGAGCTTCCCGATACTCAGCTCGCATGAGATTCCCGTTATT
22911355 CAGCTCG
1 CAGCTCG
22911362 GAAAAGCTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 26 0.53
50 23 0.47
ACGTcount: A:0.18, C:0.29, G:0.21, T:0.32
Consensus pattern (50 bp):
CAGCTCGCATGAGCTTCCCGATACTCAGCTCGCATGAGATTCCCGTTATT
Found at i:22916276 original size:41 final size:41
Alignment explanation
Indices: 22916231--22916357 Score: 218
Period size: 41 Copynumber: 3.1 Consensus size: 41
22916221 TTTATTGTCA
* *
22916231 GTGAAATAATTCAGACTTTATGTCTAGCAGGCTTGATGCCG
1 GTGAAATTATTCAGACTATATGTCTAGCAGGCTTGATGCCG
22916272 GTGAAATTATTCAGACTATATGTCTAGCAGGCTTGATGCCG
1 GTGAAATTATTCAGACTATATGTCTAGCAGGCTTGATGCCG
* *
22916313 GTGAAATTATTCAGACTATACGTCTAGCAGGCTTAATGCCG
1 GTGAAATTATTCAGACTATATGTCTAGCAGGCTTGATGCCG
22916354 GTGA
1 GTGA
22916358 TACATTTCGG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (41 bp):
GTGAAATTATTCAGACTATATGTCTAGCAGGCTTGATGCCG
Found at i:22916380 original size:82 final size:82
Alignment explanation
Indices: 22916231--22916386 Score: 199
Period size: 82 Copynumber: 1.9 Consensus size: 82
22916221 TTTATTGTCA
* * * * **
22916231 GTGAAATAATTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATTATTCAGACTATATGTC
1 GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGAAATTATTCAGACAATAAATC
22916296 TAGCAGGCTTGATGCCG
66 TAGCAGGCTTGATGCCG
* *
22916313 GTGAAATTATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGATACA-T-TTCGGACAATAAA
1 GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGA-A-ATTATTCAGACAATAAA
*
22916376 TCTAGTAGGCT
64 TCTAGCAGGCT
22916387 AAAAGCCGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
82 60 0.95
83 2 0.03
84 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (82 bp):
GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCGGTGAAATTATTCAGACAATAAATC
TAGCAGGCTTGATGCCG
Found at i:22923825 original size:41 final size:41
Alignment explanation
Indices: 22923780--22923905 Score: 135
Period size: 41 Copynumber: 3.1 Consensus size: 41
22923770 TTTATTGTCA
* * *
22923780 GTGAAATAATTCAGACTTTATGTCTAGCAGGCTTGATGCCG
1 GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCG
*
22923821 GTGAAATTATTCAGACTATACGTCTAGCAGGCTTAATGCCG
1 GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCG
* * * * * * * * *
22923862 ATGATACATTTCGGACAATAAGTCTAGCAGGCTAAAAGCCG
1 GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCG
22923903 GTG
1 GTG
22923906 TACTGAATCA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (41 bp):
GTGAAATAATTCAGACTATACGTCTAGCAGGCTTAATGCCG
Found at i:22926381 original size:25 final size:25
Alignment explanation
Indices: 22926353--22926420 Score: 136
Period size: 25 Copynumber: 2.7 Consensus size: 25
22926343 GGACACACCA
22926353 CAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTGATACT
22926378 CAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTGATACT
22926403 CAGCTCGCATGAGCTTCC
1 CAGCTCGCATGAGCTTCC
22926421 CATTATTCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCTGATACT
Found at i:22926434 original size:25 final size:25
Alignment explanation
Indices: 22926353--22926445 Score: 125
Period size: 25 Copynumber: 3.7 Consensus size: 25
22926343 GGACACACCA
*
22926353 CAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTCATACT
*
22926378 CAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTCATACT
*
22926403 CAGCTCGCATGAGCTTCC-CATTATT
1 CAGCTCGCATGAGCTTCCTCA-TACT
* *
22926428 CAACTCGCATGACCTTCC
1 CAGCTCGCATGAGCTTCC
22926446 CGTTATTCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 1 0.02
25 62 0.98
ACGTcount: A:0.20, C:0.34, G:0.17, T:0.28
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCCTCATACT
Found at i:22926446 original size:25 final size:25
Alignment explanation
Indices: 22926406--22926454 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
22926396 TGATACTCAG
*
22926406 CTCGCATGAGCTTCCCATTATTCAA
1 CTCGCATGACCTTCCCATTATTCAA
*
22926431 CTCGCATGACCTTCCCGTTATTCA
1 CTCGCATGACCTTCCCATTATTCA
22926455 GCTCAGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (25 bp):
CTCGCATGACCTTCCCATTATTCAA
Found at i:22926456 original size:50 final size:50
Alignment explanation
Indices: 22926353--22926471 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 50
22926343 GGACACACCA
* * * *
22926353 CAGCTCGCATGAGCTTCCTGATACTCAGCTCGCATGAGCTTCCTGATACT
1 CAGCTCGCATGAGCTTCCTCATACTCAACTCGCATGACCTTCCCGATACT
* * *
22926403 CAGCTCGCATGAGCTTCC-CATTATTCAACTCGCATGACCTTCCCGTTATT
1 CAGCTCGCATGAGCTTCCTCA-TACTCAACTCGCATGACCTTCCCGATACT
*
22926453 CAGCTCAG-AAGAGCTTCCT
1 CAGCTC-GCATGAGCTTCCT
22926472 ATTTACAACT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
49 1 0.02
50 56 0.97
51 1 0.02
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.29
Consensus pattern (50 bp):
CAGCTCGCATGAGCTTCCTCATACTCAACTCGCATGACCTTCCCGATACT
Found at i:22926469 original size:25 final size:25
Alignment explanation
Indices: 22926406--22926470 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
22926396 TGATACTCAG
*
22926406 CTCGCATGAGCTTCCCATTATTCAA
1 CTCGCAAGAGCTTCCCATTATTCAA
* * * *
22926431 CTCGCATGACCTTCCCGTTATTCAG
1 CTCGCAAGAGCTTCCCATTATTCAA
22926456 CTCAG-AAGAGCTTCC
1 CTC-GCAAGAGCTTCC
22926471 TATTTACAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (25 bp):
CTCGCAAGAGCTTCCCATTATTCAA
Found at i:22927441 original size:43 final size:43
Alignment explanation
Indices: 22927380--22927470 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
22927370 TACATTTAGA
* * *
22927380 GACACGGGCATGTGTCTCATCCGTGTGTGACACACGGCTAGGT
1 GACACGGCCATGTGTCTCAGCCGTGTGTGACACACGGCCAGGT
*
22927423 GACACGGCCGTGTGTCTCAGCCGTGTGTGACACACGGCCAGGT
1 GACACGGCCATGTGTCTCAGCCGTGTGTGACACACGGCCAGGT
22927466 GACAC
1 GACAC
22927471 AATCGTGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.20
Consensus pattern (43 bp):
GACACGGCCATGTGTCTCAGCCGTGTGTGACACACGGCCAGGT
Found at i:22927478 original size:43 final size:43
Alignment explanation
Indices: 22927390--22927481 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
22927380 GACACGGGCA
* * **
22927390 TGTGTCTCATCCGTGTGTGACACACGGCTAGGTGACACGGCCG
1 TGTGTCTCAGCCGTGTGTGACACACGGCCAGGTGACACAACCG
*
22927433 TGTGTCTCAGCCGTGTGTGACACACGGCCAGGTGACACAATCG
1 TGTGTCTCAGCCGTGTGTGACACACGGCCAGGTGACACAACCG
22927476 TGTGTC
1 TGTGTC
22927482 CTCTGTATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (43 bp):
TGTGTCTCAGCCGTGTGTGACACACGGCCAGGTGACACAACCG
Found at i:22928583 original size:76 final size:76
Alignment explanation
Indices: 22928427--22928621 Score: 175
Period size: 76 Copynumber: 2.6 Consensus size: 76
22928417 CAGATTTGAT
* * *
22928427 AAACCATCATTGCTGGGAAATTCAGGGTGGCAAGTCATCGTTGTCGGGCAACCCTAGATAACATG
1 AAACCATCATTGCTGGGAAATCCAGGGTGGCAAGTCATCATTGCCGGGCAACCCTAGATAACATG
*
22928492 AAAAAACTGAG
66 AAAAAACTGAA
* * *
22928503 AAACCATCATT-TTCGGGAAATCCGGGGTGGC-AGATCATCATTGCCGGGCAA-CCTGGGATAAC
1 AAACCATCATTGCT-GGGAAATCCAGGGTGGCAAG-TCATCATTGCCGGGCAACCCT-AGATAAC
* *
22928565 AT-AAATGAGCTGAA
63 ATGAAA-AAACTGAA
** * * * *
22928579 AAACCATTGTTGC-AGAACAATTCAGGGTGGCAAATCATCATTG
1 AAACCATCATTGCTGGGA-AATCCAGGGTGGCAAGTCATCATTG
22928622 TCAGACAACT
Statistics
Matches: 95, Mismatches: 17, Indels: 14
0.75 0.13 0.11
Matches are distributed among these distances:
75 11 0.12
76 83 0.87
77 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (76 bp):
AAACCATCATTGCTGGGAAATCCAGGGTGGCAAGTCATCATTGCCGGGCAACCCTAGATAACATG
AAAAAACTGAA
Found at i:22937194 original size:423 final size:423
Alignment explanation
Indices: 22936408--22937253 Score: 1674
Period size: 423 Copynumber: 2.0 Consensus size: 423
22936398 CCATCTATAT
22936408 CTCTCAAGTTCAAAACTTGTCTAAAAAGACTTAACATTATTATAAAATCAATATTCATCACAAGC
1 CTCTCAAGTTCAAAACTTGTCTAAAAAGACTTAACATTATTATAAAATCAATATTCATCACAAGC
*
22936473 ACAATTAAGTTTCATAATTTTATAGTCTCACGTAACTTTTCAACATTTTACAATTTAGTCTTTTT
66 ACAATTAAGTTTCATAATTTTATAGTCTCACATAACTTTTCAACATTTTACAATTTAGTCTTTTT
22936538 CTCTACACATTTAATCATCTCAACAATAACCATAATCATTTACTACTTTCTTGAATTATTCACAC
131 CTCTACACATTTAATCATCTCAACAATAACCATAATCATTTACTACTTTCTTGAATTATTCACAC
22936603 ATTTATTAAGTTACATATACTTAATTCATGACCTTAACATGTTCTTTATTTTATAATTTTAATAA
196 ATTTATTAAGTTACATATACTTAATTCATGACCTTAACATGTTCTTTATTTTATAATTTTAATAA
22936668 AATCTAATTAGCTAAAAAAGAATTCTAAAGTACTTACAAATTTTAATTAGACTATACTTCCTTCA
261 AATCTAATTAGCTAAAAAAGAATTCTAAAGTACTTACAAATTTTAATTAGACTATACTTCCTTCA
22936733 AGTTTCATCCACTTCTTTCCCTTTCTGTACTCTTCCTCCATCTTCTTCCTTGTCTTTCTCTTCAT
326 AGTTTCATCCACTTCTTTCCCTTTCTGTACTCTTCCTCCATCTTCTTCCTTGTCTTTCTCTTCAT
22936798 TTCACATCAATTTCATAAAATATGAAAAATCAA
391 TTCACATCAATTTCATAAAATATGAAAAATCAA
22936831 CTCTCAAGTTCAAAACTTGTCTAAAAAGACTTAACATTATTATAAAATCAATATTCATCACAAGC
1 CTCTCAAGTTCAAAACTTGTCTAAAAAGACTTAACATTATTATAAAATCAATATTCATCACAAGC
22936896 ACAATTAAGTTTCATAATTTTATAGTCTCACATAACTTTTCAACATTTTACAATTTAGTCTTTTT
66 ACAATTAAGTTTCATAATTTTATAGTCTCACATAACTTTTCAACATTTTACAATTTAGTCTTTTT
22936961 CTCTACACATTTAATCATCTCAACAATAACCATAATCATTTACTACTTTCTTGAATTATTCACAC
131 CTCTACACATTTAATCATCTCAACAATAACCATAATCATTTACTACTTTCTTGAATTATTCACAC
22937026 ATTTATTAAGTTACATATACTTAATTCATGACCTTAACATGTTCTTTATTTTATAATTTTAATAA
196 ATTTATTAAGTTACATATACTTAATTCATGACCTTAACATGTTCTTTATTTTATAATTTTAATAA
22937091 AATCTAATTAGCTAAAAAAGAATTCTAAAGTACTTACAAATTTTAATTAGACTATACTTCCTTCA
261 AATCTAATTAGCTAAAAAAGAATTCTAAAGTACTTACAAATTTTAATTAGACTATACTTCCTTCA
*
22937156 AGTTTCATCCACTTCTTTCCCTTTGTGTACTCTTCCTCCATCTTCTTCCTTGTCTTTCTCTTCAT
326 AGTTTCATCCACTTCTTTCCCTTTCTGTACTCTTCCTCCATCTTCTTCCTTGTCTTTCTCTTCAT
22937221 TTCACATCAATTTCATAAAATATGAAAAATCAA
391 TTCACATCAATTTCATAAAATATGAAAAATCAA
22937254 TACACTTTAT
Statistics
Matches: 421, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
423 421 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (423 bp):
CTCTCAAGTTCAAAACTTGTCTAAAAAGACTTAACATTATTATAAAATCAATATTCATCACAAGC
ACAATTAAGTTTCATAATTTTATAGTCTCACATAACTTTTCAACATTTTACAATTTAGTCTTTTT
CTCTACACATTTAATCATCTCAACAATAACCATAATCATTTACTACTTTCTTGAATTATTCACAC
ATTTATTAAGTTACATATACTTAATTCATGACCTTAACATGTTCTTTATTTTATAATTTTAATAA
AATCTAATTAGCTAAAAAAGAATTCTAAAGTACTTACAAATTTTAATTAGACTATACTTCCTTCA
AGTTTCATCCACTTCTTTCCCTTTCTGTACTCTTCCTCCATCTTCTTCCTTGTCTTTCTCTTCAT
TTCACATCAATTTCATAAAATATGAAAAATCAA
Found at i:22947829 original size:77 final size:77
Alignment explanation
Indices: 22947702--22947863 Score: 297
Period size: 77 Copynumber: 2.1 Consensus size: 77
22947692 TGAGACAATC
** *
22947702 TTAAAGTGTTATGTGAATAAAATTTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
1 TTAAAGTGTTATGCCAATAAAATGTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
22947767 CAAGTTCAATTA
66 CAAGTTCAATTA
22947779 TTAAAGTGTTATGCCAATAAAATGTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
1 TTAAAGTGTTATGCCAATAAAATGTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
22947844 CAAGTTCAATTA
66 CAAGTTCAATTA
22947856 TTAAAGTG
1 TTAAAGTG
22947864 GACAAAAAAA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 82 1.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.40
Consensus pattern (77 bp):
TTAAAGTGTTATGCCAATAAAATGTTATATATTTCAAGTTCAAAGATTAAAATATATCTAATTGT
CAAGTTCAATTA
Found at i:22948232 original size:56 final size:57
Alignment explanation
Indices: 22948148--22948288 Score: 148
Period size: 56 Copynumber: 2.5 Consensus size: 57
22948138 TATTTTTTTA
* * *
22948148 TATTATTATA-TAT-TATGATTTTAGTAAATTA-ATATAAGAATAATTATATTAAGAAT
1 TATTATTAAATTATATATTATTTTATTAAATTATATATAAGAATAATTAT-TTAA-AAT
* * * *
22948204 T-TTATTAAATTATATATT-TTTTATTAAATTATATTTAATAATTATTATTTTAAAT
1 TATTATTAAATTATATATTATTTTATTAAATTATATATAAGAATAATTATTTAAAAT
*
22948259 TATTATTAAATTATTTATTATTTATATTAA
1 TATTATTAAATTATATATTATTT-TATTAA
22948289 TAATCTTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
55 11 0.15
56 35 0.49
57 19 0.27
58 6 0.08
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.55
Consensus pattern (57 bp):
TATTATTAAATTATATATTATTTTATTAAATTATATATAAGAATAATTATTTAAAAT
Found at i:22948251 original size:24 final size:23
Alignment explanation
Indices: 22948189--22948301 Score: 82
Period size: 22 Copynumber: 5.1 Consensus size: 23
22948179 ATATAAGAAT
*
22948189 AATTATATTAAGAATT-TTATTA
1 AATTATATTAATAATTATTATTA
*
22948211 AATTATA-T-AT--TTTTTATTA
1 AATTATATTAATAATTATTATTA
22948230 AATTATATTTAATAATTATTATTTTA
1 AATTATA-TTAATAATTATTA--TTA
22948256 AATTATTATT-A-AATTATTTATT-
1 AATTA-TATTAATAATTA-TTATTA
* *
22948278 ATTTATATTAATAA-TCTTATTA
1 AATTATATTAATAATTATTATTA
22948300 AA
1 AA
22948302 ATTTAATAAC
Statistics
Matches: 73, Mismatches: 5, Indels: 26
0.70 0.05 0.25
Matches are distributed among these distances:
18 2 0.03
19 13 0.18
20 1 0.01
21 11 0.15
22 16 0.22
23 4 0.05
24 10 0.14
25 4 0.05
26 10 0.14
27 2 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (23 bp):
AATTATATTAATAATTATTATTA
Found at i:22948259 original size:13 final size:13
Alignment explanation
Indices: 22948227--22948273 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
22948217 ATATTTTTTA
22948227 TTAAATTA-TATT
1 TTAAATTATTATT
*
22948239 TAATAATTATTATT
1 TTA-AATTATTATT
22948253 TTAAATTATTA--
1 TTAAATTATTATT
22948264 TTAAATTATT
1 TTAAATTATT
22948274 TATTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 10 0.32
12 2 0.06
13 13 0.42
14 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTAAATTATTATT
Found at i:22948283 original size:19 final size:19
Alignment explanation
Indices: 22948204--22948283 Score: 60
Period size: 19 Copynumber: 4.3 Consensus size: 19
22948194 TATTAAGAAT
* *
22948204 TTTATTAAATTATATATTT
1 TTTATTAAATTATTTATTA
*
22948223 TTTATTAAATTATATTTAATA
1 TTTATTAAA-T-TATTTATTA
* *
22948244 ATTATT--ATT-TTAAATTA
1 TTTATTAAATTATT-TATTA
22948261 -TTATTAAATTATTTATTA
1 TTTATTAAATTATTTATTA
22948279 TTTAT
1 TTTAT
22948284 ATTAATAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
16 7 0.15
17 4 0.09
18 8 0.17
19 16 0.34
20 1 0.02
21 11 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATTAAATTATTTATTA
Found at i:22948492 original size:16 final size:16
Alignment explanation
Indices: 22948471--22948523 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
22948461 TTGAATTGCT
*
22948471 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
*
22948487 ATTACGCATCTATTCT
1 ATTACGCATCTATTCC
22948503 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
22948519 ATTAC
1 ATTAC
22948524 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:22951131 original size:47 final size:48
Alignment explanation
Indices: 22951041--22951139 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
22951031 GTTTTGTTAA
* * ** *
22951041 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAAATTTAGTGTT
*
22951088 TTTAAGTAATATTTATAAAAATTAGGTAAAAATAAAAAATTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAAATTTAGTGTT
22951136 TTTA
1 TTTA
22951140 TTTCTTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 39 0.87
48 6 0.13
ACGTcount: A:0.45, C:0.01, G:0.09, T:0.44
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAAATTTAGTGTT
Found at i:22951180 original size:10 final size:10
Alignment explanation
Indices: 22951167--22951208 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
22951157 ATTTTAATTT
*
22951167 ATTTTTTATA
1 ATTTTTTACA
22951177 A-TTTTTACA
1 ATTTTTTACA
22951186 ATTTTTTACA
1 ATTTTTTACA
22951196 A--TTTTACA
1 ATTTTTTACA
22951204 ATTTT
1 ATTTT
22951209 AAATTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
8 8 0.29
9 8 0.29
10 12 0.43
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTTTTTACA
Found at i:22951183 original size:9 final size:9
Alignment explanation
Indices: 22951169--22951208 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
22951159 TTTAATTTAT
*
22951169 TTTTTATAA
1 TTTTTACAA
22951178 TTTTTACAA
1 TTTTTACAA
22951187 TTTTTTACAA
1 -TTTTTACAA
22951197 -TTTTACAA
1 TTTTTACAA
22951205 TTTT
1 TTTT
22951209 AAATTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.29
9 11 0.39
10 9 0.32
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTTACAA
Found at i:22951190 original size:18 final size:18
Alignment explanation
Indices: 22951167--22951208 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
22951157 ATTTTAATTT
*
22951167 ATTTTTTATAATTTTTACA
1 ATTTTTTACAA-TTTTACA
22951186 ATTTTTTACAATTTTACA
1 ATTTTTTACAATTTTACA
22951204 ATTTT
1 ATTTT
22951209 AAATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTTTACAATTTTACA
Found at i:22951467 original size:89 final size:89
Alignment explanation
Indices: 22951305--22951479 Score: 244
Period size: 89 Copynumber: 2.0 Consensus size: 89
22951295 TATAAAGAAC
** * * *
22951305 TTATTTAATATATAAATTAAAAAGTACTAATTAATCCAAATCTTAAACCCTAACCTGACCCCAAA
1 TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCGACCCCAAA
22951370 TCCCTAACCCCTAACCCCTAAATT
66 TCCCTAACCCCTAACCCCTAAATT
* * *
22951394 TTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCTTAAACCATAACCCGATCCCTAA
1 TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCGACCCCAAA
* *
22951459 -CTCTTAACCCTTAACCCCTAA
66 TC-CCTAACCCCTAACCCCTAA
22951480 CCCCTAACCC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
88 1 0.01
89 74 0.99
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (89 bp):
TTATTTAATATATAAATTAAAAAACACTAATTAATCCAAACCTTAAACCATAACCCGACCCCAAA
TCCCTAACCCCTAACCCCTAAATT
Found at i:22951480 original size:14 final size:14
Alignment explanation
Indices: 22951463--22951499 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
22951453 CCCTAACTCT
22951463 TAACCCTTAACCCC
1 TAACCCTTAACCCC
*
22951477 TAACCCCTAACCCC
1 TAACCCTTAACCCC
*
22951491 TAAACCTTA
1 TAACCCTTA
22951500 TTTAATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:22951496 original size:8 final size:7
Alignment explanation
Indices: 22951453--22951493 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
22951443 ATAACCCGAT
22951453 CCCTAAC
1 CCCTAAC
* *
22951460 TCTTAAC
1 CCCTAAC
*
22951467 CCTTAAC
1 CCCTAAC
22951474 CCCTAAC
1 CCCTAAC
22951481 CCCTAAC
1 CCCTAAC
22951488 CCCTAA
1 CCCTAA
22951494 ACCTTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.29, C:0.49, G:0.00, T:0.22
Consensus pattern (7 bp):
CCCTAAC
Found at i:22951603 original size:7 final size:7
Alignment explanation
Indices: 22951593--22951627 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
22951583 CTCTTAACAT
22951593 CTAACCC
1 CTAACCC
22951600 CTAACCC
1 CTAACCC
22951607 CTAACCC
1 CTAACCC
22951614 CTAACCC
1 CTAACCC
*
22951621 TTAACCC
1 CTAACCC
22951628 ATAAACCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAACCC
Found at i:22951611 original size:21 final size:21
Alignment explanation
Indices: 22951577--22951635 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
22951567 AACCCTAAAT
* * *
22951577 CCCTAACTCTTAACATCTAAC
1 CCCTAACCCCTAACACCTAAC
*
22951598 CCCTAACCCCTAACCCCTAAC
1 CCCTAACCCCTAACACCTAAC
* *
22951619 CCTTAACCCATAA-ACCT
1 CCCTAACCCCTAACACCT
22951636 TAAATCACAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 3 0.10
21 28 0.90
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (21 bp):
CCCTAACCCCTAACACCTAAC
Found at i:22951636 original size:14 final size:14
Alignment explanation
Indices: 22951594--22951638 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
22951584 TCTTAACATC
*
22951594 TAACCCCTAACCCC
1 TAACCCCTAACCCT
22951608 TAACCCCTAACCCT
1 TAACCCCTAACCCT
* *
22951622 TAACCCATAAACCT
1 TAACCCCTAACCCT
22951636 TAA
1 TAA
22951639 ATCACATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (14 bp):
TAACCCCTAACCCT
Found at i:22951683 original size:14 final size:15
Alignment explanation
Indices: 22951661--22951694 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22951651 CTTAAACTAG
*
22951661 AATCCCTAA-TCCAT
1 AATCTCTAATTCCAT
22951675 AATCTCTAATTCCAT
1 AATCTCTAATTCCAT
22951690 AATCT
1 AATCT
22951695 ATAAAACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (15 bp):
AATCTCTAATTCCAT
Found at i:22952494 original size:114 final size:114
Alignment explanation
Indices: 22952290--22952895 Score: 867
Period size: 114 Copynumber: 5.3 Consensus size: 114
22952280 CTAAATCCCT
* * *
22952290 GGCGTCGTTGGGCTTAAGTATTTTTGCGACGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCTTT
1 GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATT
*
22952355 AGCGGCACTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
66 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
* * * *
22952404 GACATCGTTGGGCTTAAGAATTTTTACGGCGCTTTCCCAAAAACGCCGCTAAAGCCTTGAGCATT
1 GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATT
* * *
22952469 AGCGGCGCTTACATAAAAACACCACTAAATCCCCGAAAGCTCAAAAAAC
66 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
* * * * * *
22952518 TGCGTCGTTGGGCTTAGGCATTTTTGCGGTGCTTTCCCAAAAACGCCACTATAGCCCTGAGCATT
1 GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATT
22952583 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
66 AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
* * *
22952632 GGTGTCGTTGGGCTT-AGATTTTTTTGCGGCGCTTTCCCAAAAACGTCGCTAAAGCCCTGAGCAT
1 GGCGTCGTTGGGCTTAAGA-ATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCAT
* *
22952696 TAGCGGCGTTTACTTAAAAATGCCACTAAATCCCCGAAAGCTCAGAAAAC
65 TAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
* ** * *
22952746 GGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTCTCTCAAAAACGCCGCTAAAGCCCTGAGCAT
1 GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTT-TCCCAAAAACGCCGCTAAAGCCCTGAGCAT
* * *
22952811 TAGCGGCGCTTTCTTAAAAACGCCACTAAATTCCTGAAAGCTC-GAAAAAC
65 TAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAG-AAAAC
* * *
22952861 GGCGTCGTTGGGCTTAGGTA-TTTTGTGGCGCTTTC
1 GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTTTC
22952896 TGGAAAACGC
Statistics
Matches: 441, Mismatches: 47, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
113 3 0.01
114 347 0.79
115 91 0.21
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (114 bp):
GGCGTCGTTGGGCTTAAGAATTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATT
AGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAAC
Found at i:22954020 original size:6 final size:6
Alignment explanation
Indices: 22954009--22954051 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
22953999 TAAATAATAG
22954009 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT T
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT T
22954052 AAATTACTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTATAT
Found at i:22961755 original size:23 final size:23
Alignment explanation
Indices: 22961729--22961775 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
22961719 GGGCTTTGAA
22961729 CTGCGGCCCGTGACATTCTCCCC
1 CTGCGGCCCGTGACATTCTCCCC
22961752 CTGCGGCCCGTGACATTCTCCCC
1 CTGCGGCCCGTGACATTCTCCCC
22961775 C
1 C
22961776 ACCCATTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.49, G:0.21, T:0.21
Consensus pattern (23 bp):
CTGCGGCCCGTGACATTCTCCCC
Found at i:22964735 original size:14 final size:14
Alignment explanation
Indices: 22964701--22964737 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
22964691 AGTTTGTTTC
22964701 TTTGAAAATGATTT
1 TTTGAAAATGATTT
**
22964715 TCGGAAAATGATTT
1 TTTGAAAATGATTT
22964729 TTTGAAAAT
1 TTTGAAAAT
22964738 AACTTACTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.43
Consensus pattern (14 bp):
TTTGAAAATGATTT
Found at i:22965229 original size:15 final size:15
Alignment explanation
Indices: 22965209--22965260 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
22965199 ACTACAAAAC
22965209 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
22965224 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
22965243 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
22965258 ATT
1 ATT
22965261 AATAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:22965311 original size:13 final size:14
Alignment explanation
Indices: 22965293--22965326 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
22965283 ATATGAAGAA
22965293 TATTATTTAAAA-T
1 TATTATTTAAAATT
22965306 TATTATTTAAAATT
1 TATTATTTAAAATT
22965320 TATTATT
1 TATTATT
22965327 ATAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTTAAAATT
Found at i:22966171 original size:16 final size:16
Alignment explanation
Indices: 22966150--22966218 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
22966140 TTTGGTTCGC
22966150 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22966166 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22966182 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
22966199 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
22966215 TGTA
1 TGTA
22966219 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:22966196 original size:33 final size:32
Alignment explanation
Indices: 22966150--22966218 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
22966140 TTTGGTTCGC
22966150 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
22966182 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
22966215 TGTA
1 TGTA
22966219 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:22966283 original size:44 final size:45
Alignment explanation
Indices: 22966199--22966289 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
22966189 GGATTAGAGG
* * *
22966199 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
22966244 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
22966288 TG
1 TG
22966290 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:22966471 original size:16 final size:16
Alignment explanation
Indices: 22966434--22966488 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
22966424 TTAATCATAT
*
22966434 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
22966450 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
22966465 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
22966483 -TAAAAT
1 TTAAAAT
22966489 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:22966481 original size:18 final size:18
Alignment explanation
Indices: 22966440--22966488 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
22966430 ATATTTAAAC
22966440 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
22966458 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
22966474 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
22966489 TCTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:22971844 original size:2 final size:2
Alignment explanation
Indices: 22971839--22971871 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
22971829 GTTTTTTTAA
*
22971839 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22971872 GGAAAGGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:22978217 original size:63 final size:63
Alignment explanation
Indices: 22978118--22978250 Score: 257
Period size: 63 Copynumber: 2.1 Consensus size: 63
22978108 TCAGGTATTG
*
22978118 TTTTGTAAAATATCTATGCCCTCAAGCACGCTTCCAATCATTCAAAAGTTAACAGAGGAATTA
1 TTTTGTAAAATATCTATGCCCTCAAGCAAGCTTCCAATCATTCAAAAGTTAACAGAGGAATTA
22978181 TTTTGTAAAATATCTATGCCCTCAAGCAAGCTTCCAATCATTCAAAAGTTAACAGAGGAATTA
1 TTTTGTAAAATATCTATGCCCTCAAGCAAGCTTCCAATCATTCAAAAGTTAACAGAGGAATTA
22978244 TTTTGTA
1 TTTTGTA
22978251 GTTTTCTCCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (63 bp):
TTTTGTAAAATATCTATGCCCTCAAGCAAGCTTCCAATCATTCAAAAGTTAACAGAGGAATTA
Found at i:22980331 original size:2 final size:2
Alignment explanation
Indices: 22980324--22980348 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22980314 AATCATGTTT
22980324 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22980349 GTTGAAGACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22991580 original size:18 final size:19
Alignment explanation
Indices: 22991545--22991580 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22991535 TGTAATTGGG
*
22991545 TAAAATTTTATCTAATTAT
1 TAAAATTTTATATAATTAT
22991564 TAAAATTTTA-ATAATTA
1 TAAAATTTTATATAATTA
22991581 ATTTAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TAAAATTTTATATAATTAT
Found at i:22996537 original size:42 final size:43
Alignment explanation
Indices: 22996490--22996571 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
22996480 ATTTACAAGC
* *
22996490 CACACGGCTTGGACACATGCCCGTGCCCT-TGCTCGTGTGGTT
1 CACACGACTTGGACACATGCCCGTGCCCTCTGCTCATGTGGTT
* *
22996532 CACACGACTTGGACACATGTCCGTGTCCTCTGCTCATGTG
1 CACACGACTTGGACACATGCCCGTGCCCTCTGCTCATGTG
22996572 TCTCACATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.15, C:0.33, G:0.26, T:0.27
Consensus pattern (43 bp):
CACACGACTTGGACACATGCCCGTGCCCTCTGCTCATGTGGTT
Found at i:22996852 original size:12 final size:12
Alignment explanation
Indices: 22996837--22996861 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22996827 ATGGCCACCT
22996837 ACACGGCCTGGC
1 ACACGGCCTGGC
22996849 ACACGGCCTGGC
1 ACACGGCCTGGC
22996861 A
1 A
22996862 ATCGAAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.40, G:0.32, T:0.08
Consensus pattern (12 bp):
ACACGGCCTGGC
Found at i:22997898 original size:17 final size:17
Alignment explanation
Indices: 22997852--22997898 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
22997842 GCCCCTAAAC
*
22997852 AAAAACACAACA-CAAA
1 AAAAACCCAACAGCAAA
* *
22997868 AGAAACCCTA-AGCAAA
1 AAAAACCCAACAGCAAA
22997884 AAAAACCCAACAGCA
1 AAAAACCCAACAGCA
22997899 GCAGCCCCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
15 1 0.04
16 19 0.79
17 4 0.17
ACGTcount: A:0.64, C:0.28, G:0.06, T:0.02
Consensus pattern (17 bp):
AAAAACCCAACAGCAAA
Found at i:23002800 original size:25 final size:25
Alignment explanation
Indices: 23002754--23002801 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23002744 CCGGATAAGC
**
23002754 TTCTCGTTAATGGCTCTCAAGAGCT
1 TTCTCGTTAATGGCTCAAAAGAGCT
23002779 TTCT-GTTATATGGCTCAAAAGAG
1 TTCTCGTTA-ATGGCTCAAAAGAG
23002802 GGCTTCTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
TTCTCGTTAATGGCTCAAAAGAGCT
Found at i:23004783 original size:23 final size:22
Alignment explanation
Indices: 23004740--23004784 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
23004730 GTTAAATTGA
* **
23004740 ATTGTATGTATGTGATTGTATT
1 ATTGTATGTATATGAAAGTATT
23004762 ATTGTCATGTATATGAAAGTATT
1 ATTGT-ATGTATATGAAAGTATT
23004785 CACATATCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAGTATT
Found at i:23005100 original size:26 final size:26
Alignment explanation
Indices: 23005051--23005108 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
23005041 CCCGTTATTT
*
23005051 GGCTCTTCGTGAGCTTCTCGATTAAA
1 GGCTCTTCGTGAGCTTCTCAATTAAA
* *
23005077 GGCTCTTTGTGAGCTTC-CTAATTAAT
1 GGCTCTTCGTGAGCTTCTC-AATTAAA
23005103 GGCTCT
1 GGCTCT
23005109 CCGAAGCTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCTCAATTAAA
Found at i:23005189 original size:25 final size:25
Alignment explanation
Indices: 23005062--23005189 Score: 63
Period size: 25 Copynumber: 5.2 Consensus size: 25
23005052 GCTCTTCGTG
* *
23005062 AGCTT-CTCGATTAAAGGCTCTTTGTG
1 AGCTTCCT-GATTAATGGCTCTTTG-A
* **
23005088 AGCTTCCTAATTAATGGCTCTCCGA
1 AGCTTCCTGATTAATGGCTCTTTGA
*
23005113 AGCTTCCCGA-T-ATGGCT-TGCTTGA
1 AGCTTCCTGATTAATGGCTCT--TTGA
* * * *
23005137 A-CTTCCCGA-TATATGACT-ATTCA
1 AGCTTCCTGATTA-ATGGCTCTTTGA
23005160 GAGCTTCCTGATTAATGGCTCTTTGA
1 -AGCTTCCTGATTAATGGCTCTTTGA
23005186 AGCT
1 AGCT
23005190 ACCCGTTATT
Statistics
Matches: 77, Mismatches: 16, Indels: 19
0.69 0.14 0.17
Matches are distributed among these distances:
22 1 0.01
23 18 0.23
24 5 0.06
25 29 0.38
26 22 0.29
27 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTTCCTGATTAATGGCTCTTTGA
Found at i:23005238 original size:73 final size:75
Alignment explanation
Indices: 23005027--23005302 Score: 208
Period size: 73 Copynumber: 3.7 Consensus size: 75
23005017 ACACACCATA
* * * * * * *
23005027 GCTCTTATG-AGCATCCCGTTATTTGGCTCTTCGTGAGCTTCTCGAT-TAAAGGCTCTTTGTGAG
1 GCTC-TATGAAGCTTCCCGTTA-TTGGCTC-ACATGAGCTTCCCGATAT-ATGGCTATTTATGAG
*
23005090 CTTCCTAATTAATG
62 CTTCCTGATTAATG
** * ** * * * *
23005104 GCTCTCCGAAGCTTCCCGATA-TGGCTTGCTTGAACTTCCCGATATATGACTATTCA-GAGCTTC
1 GCTCTATGAAGCTTCCCGTTATTGGCTCACATGAGCTTCCCGATATATGGCTATTTATGAGCTTC
23005167 CTGATTAATG
66 CTGATTAATG
* * *
23005177 GCTCTTTGAAGCTACCCGTTATTGGCTCACATGAGCTTCCCGAT-TATGGCT-TTTATTAGCTTC
1 GCTCTATGAAGCTTCCCGTTATTGGCTCACATGAGCTTCCCGATATATGGCTATTTATGAGCTTC
**
23005240 CTG-TTATACA
66 CTGATTA-ATG
* * *
23005250 GCTCGGAT-AAGCTTCCCGTTATATGGCTCACACGAGCTTCCCGTTATATGGCT
1 GCTC-TATGAAGCTTCCCGTTAT-TGGCTCACATGAGCTTCCCGATATATGGCT
23005303 CGAGAGAGGG
Statistics
Matches: 158, Mismatches: 33, Indels: 18
0.76 0.16 0.09
Matches are distributed among these distances:
72 6 0.04
73 66 0.42
74 57 0.36
75 13 0.08
76 2 0.01
77 14 0.09
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (75 bp):
GCTCTATGAAGCTTCCCGTTATTGGCTCACATGAGCTTCCCGATATATGGCTATTTATGAGCTTC
CTGATTAATG
Found at i:23005278 original size:25 final size:25
Alignment explanation
Indices: 23005185--23005303 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 25
23005175 TGGCTCTTTG
*
23005185 AAGCTACCCGTTAT-TGGCTCACAT
1 AAGCTTCCCGTTATATGGCTCACAT
* * ***
23005209 GAGCTTCCCGAT-TATGGCTTTTAT
1 AAGCTTCCCGTTATATGGCTCACAT
* * ** **
23005233 TAGCTTCCTGTTATACAGCTCGGAT
1 AAGCTTCCCGTTATATGGCTCACAT
*
23005258 AAGCTTCCCGTTATATGGCTCACAC
1 AAGCTTCCCGTTATATGGCTCACAT
*
23005283 GAGCTTCCCGTTATATGGCTC
1 AAGCTTCCCGTTATATGGCTC
23005304 GAGAGAGGGC
Statistics
Matches: 71, Mismatches: 22, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
23 1 0.01
24 25 0.35
25 45 0.63
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (25 bp):
AAGCTTCCCGTTATATGGCTCACAT
Found at i:23009006 original size:5 final size:5
Alignment explanation
Indices: 23008996--23009020 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
23008986 GCCTAAGATG
23008996 TGAAT TGAAT TGAAT TGAAT TGAAT
1 TGAAT TGAAT TGAAT TGAAT TGAAT
23009021 AAAATATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TGAAT
Found at i:23009237 original size:23 final size:22
Alignment explanation
Indices: 23009194--23009238 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
23009184 CTTAAATTAA
* **
23009194 ATTGTATGTATGTGATTGTATT
1 ATTGTATGTATATGAAAGTATT
23009216 ATTGTCATGTATATGAAAGTATT
1 ATTGT-ATGTATATGAAAGTATT
23009239 CACATATCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAGTATT
Found at i:23009579 original size:25 final size:26
Alignment explanation
Indices: 23009507--23009589 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
23009497 TCCATATATT
* * *
23009507 GCTCTTCGTGAGCTTCCCGATTAAAG
1 GCTCTTTGTGAGCTTCCCAATTAATG
* * * *
23009533 GATTTTTGTGAACTTCCTAATTAATG
1 GCTCTTTGTGAGCTTCCCAATTAATG
23009559 GCTCTTTG-GAGCTTCCCAATTAATG
1 GCTCTTTGTGAGCTTCCCAATTAATG
23009584 GCTCTT
1 GCTCTT
23009590 AGGATCTACC
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 21 0.46
26 25 0.54
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCCCAATTAATG
Found at i:23023578 original size:23 final size:23
Alignment explanation
Indices: 23023552--23023649 Score: 137
Period size: 23 Copynumber: 4.3 Consensus size: 23
23023542 ATAAGTGCCA
23023552 CACTGATATGTAGCCGAAACTAC
1 CACTGATATGTAGCCGAAACTAC
*
23023575 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAACTAC
*
23023598 CACTG-GATGTAGCC-AAAGCTAC
1 CACTGATATGTAGCCGAAA-CTAC
* *
23023620 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAACTAC
23023643 CACTGAT
1 CACTGAT
23023650 CAATAACACT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 45 0.68
24 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAACTAC
Found at i:23023620 original size:45 final size:45
Alignment explanation
Indices: 23023559--23023647 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
23023549 CCACACTGAT
*
23023559 ATGTAGCCGAAACTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCGAAACTACCACTGAAATGTAGCCGAAGCTACCACTGG
23023604 ATGTAGCC-AAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCGAAA-CTACCACTGAAATGTAGCCGAAGCTACCACTG
23023648 ATCAATAACA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 3 0.07
45 39 0.93
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (45 bp):
ATGTAGCCGAAACTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:23034413 original size:5 final size:5
Alignment explanation
Indices: 23034403--23034435 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
23034393 ATACATAGAT
23034403 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
23034436 TATAACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:23038713 original size:12 final size:12
Alignment explanation
Indices: 23038696--23038720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23038686 TTCTAGTTCT
23038696 TTTATATATATA
1 TTTATATATATA
23038708 TTTATATATATA
1 TTTATATATATA
23038720 T
1 T
23038721 AATTTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATATATATA
Found at i:23038747 original size:19 final size:21
Alignment explanation
Indices: 23038707--23038761 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
23038697 TTATATATAT
*
23038707 ATTTATATATATATAATTTTA
1 ATTTATATATATATAATATTA
23038728 ATTTATATAT-TA-AATATTAAAA
1 ATTTATATATATATAATATT---A
23038750 ATTTATATATAT
1 ATTTATATATAT
23038762 TTCAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 5 0.17
20 2 0.07
21 10 0.34
22 11 0.38
23 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTTATATATATATAATATTA
Found at i:23039153 original size:23 final size:23
Alignment explanation
Indices: 23039127--23039180 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
23039117 TGATTTTTAA
*
23039127 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
23039150 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
23039173 ACTTAGAA
1 ATTTAGAA
23039181 AAAATCTACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:23039154 original size:13 final size:13
Alignment explanation
Indices: 23039136--23039178 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
23039126 AATTTTGAAT
23039136 TATTTAGTGATAA
1 TATTTAGTGATAA
23039149 TATTTAG-GAT--
1 TATTTAGTGATAA
23039159 TATTTAGTGATAA
1 TATTTAGTGATAA
*
23039172 TACTTAG
1 TATTTAG
23039179 AAAAAATCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 3 0.12
12 3 0.12
13 13 0.50
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:23040078 original size:25 final size:23
Alignment explanation
Indices: 23040033--23040097 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
23040023 TTATTTATCC
* *
23040033 ATTTATTTTATTTTCTATTTTTGA
1 ATTT-TTTTATTTTATTTTTTTGA
*
23040057 ATTTGTTTTTATTTTATTTTTTTGT
1 A-TT-TTTTTATTTTATTTTTTTGA
*
23040082 ATTTTCTTATTTTATT
1 ATTTTTTTATTTTATT
23040098 ATCTTAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 12 0.34
24 3 0.09
25 19 0.54
26 1 0.03
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (23 bp):
ATTTTTTTATTTTATTTTTTTGA
Found at i:23043716 original size:44 final size:44
Alignment explanation
Indices: 23043552--23043755 Score: 172
Period size: 43 Copynumber: 4.7 Consensus size: 44
23043542 ATACAATGTC
* * **
23043552 ATATCTCAGATATGGTCTTACATGTTATCACATAT-C-AGTGCCA
1 ATATCCCAGATATGGTCTTACACGAAATCACATATACGA-TGCCA
*
23043595 ATAGCCCA-ACTATGGTCTTACACGAAATCACATA-ACGATGCCA
1 ATATCCCAGA-TATGGTCTTACACGAAATCACATATACGATGCCA
* * * *
23043638 ATGTCCCAGACATGGTCTTACACGTAATCACATATATCGATGTC-
1 ATATCCCAGATATGGTCTTACACGAAATCACATATA-CGATGCCA
* *
23043682 ATATCCCAGATATGGTCTTACAC-AAAGTCTCATATAAAGATGCC-
1 ATATCCCAGATATGGTCTTACACGAAA-TCACATAT-ACGATGCCA
* * *
23043726 ATAGCCCA-ACTATGATCTTATACGAAATCA
1 ATATCCCAGA-TATGGTCTTACACGAAATCA
23043756 TGTAATGCCA
Statistics
Matches: 131, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
42 1 0.01
43 64 0.49
44 56 0.43
45 10 0.08
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (44 bp):
ATATCCCAGATATGGTCTTACACGAAATCACATATACGATGCCA
Found at i:23057546 original size:21 final size:20
Alignment explanation
Indices: 23057500--23057586 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 20
23057490 CCTGATCAGT
*
23057500 ATACGACACATAAGTGCCTG
1 ATACGACACAGAAGTGCCTG
* * *
23057520 AAACGACACACGAGGTGCTTG
1 ATACGACACA-GAAGTGCCTG
*
23057541 ATACGACACATAAAGTGCCTGAG
1 ATACGACACA-GAAGTGCCT--G
*
23057564 ATACGACACATAAAGTGCCTG
1 ATACGACACA-GAAGTGCCTG
23057585 AT
1 AT
23057587 CGGCAAAGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
20 9 0.16
21 25 0.45
23 21 0.38
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (20 bp):
ATACGACACAGAAGTGCCTG
Found at i:23057570 original size:23 final size:23
Alignment explanation
Indices: 23057500--23057585 Score: 101
Period size: 23 Copynumber: 4.0 Consensus size: 23
23057490 CCTGATCAGT
23057500 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** * *
23057521 A-ACGACACACGAGGTG-CT-TG
1 ATACGACACATAAAGTGCCTGAG
23057541 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
23057564 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
23057586 TCGGCAAAGC
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
20 11 0.21
21 17 0.32
22 2 0.04
23 23 0.43
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:23057907 original size:3 final size:3
Alignment explanation
Indices: 23057899--23057937 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
23057889 TAATTCAAAC
23057899 TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TA
23057938 CTTACCTCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23058837 original size:14 final size:14
Alignment explanation
Indices: 23058820--23058865 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
23058810 TATTTATATT
23058820 ATAATAATAATTTA
1 ATAATAATAATTTA
*
23058834 ATAATACTAATTTA
1 ATAATAATAATTTA
23058848 ATAATAATAATTTA
1 ATAATAATAATTTA
23058862 ATAA
1 ATAA
23058866 CATTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:23063893 original size:15 final size:16
Alignment explanation
Indices: 23063873--23063906 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23063863 TCTTATGAAT
23063873 TTTATA-ATTTTAAAA
1 TTTATATATTTTAAAA
*
23063888 TTTATATATTTTAATA
1 TTTATATATTTTAAAA
23063904 TTT
1 TTT
23063907 CAGATAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATATATTTTAAAA
Found at i:23064638 original size:31 final size:29
Alignment explanation
Indices: 23064570--23064638 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
23064560 ATGACATTTA
*
23064570 TATTTAATGTAATATTAATATAATTTTTT
1 TATTTAATATAATATTAATATAATTTTTT
* * *
23064599 AATATTAATATAAATATTATTATTAGTTTTTT
1 TAT-TTAATAT-AATATTAATA-TAATTTTTT
23064631 TATTTAAT
1 TATTTAAT
23064639 TAGATTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 2 0.06
30 6 0.19
31 14 0.44
32 10 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
TATTTAATATAATATTAATATAATTTTTT
Found at i:23070785 original size:29 final size:29
Alignment explanation
Indices: 23070724--23070785 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
23070714 TAACAAGGGT
* **
23070724 TCAAAAGGACACTCTCACTATCAGTTCTA
1 TCAAAAAGACACTCTCACTATCAGTTAAA
23070753 -CAAAAAGACACTCTCACTATCAGTTAAA
1 TCAAAAAGACACTCTCACTATCAGTTAAA
23070781 TCAAA
1 TCAAA
23070786 TAATACTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (29 bp):
TCAAAAAGACACTCTCACTATCAGTTAAA
Found at i:23071569 original size:7 final size:7
Alignment explanation
Indices: 23071557--23071604 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
23071547 CAGATGCACG
23071557 GGGAAAT
1 GGGAAAT
23071564 GGGAAAT
1 GGGAAAT
*
23071571 GGGGAAT
1 GGGAAAT
*
23071578 GGGGAA-
1 GGGAAAT
23071584 GGGAAAT
1 GGGAAAT
23071591 -GGAAAT
1 GGGAAAT
23071597 GGGAAAT
1 GGGAAAT
23071604 G
1 G
23071605 TATTTTAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 11 0.30
7 26 0.70
ACGTcount: A:0.40, C:0.00, G:0.48, T:0.12
Consensus pattern (7 bp):
GGGAAAT
Found at i:23072733 original size:108 final size:105
Alignment explanation
Indices: 23072532--23072911 Score: 430
Period size: 101 Copynumber: 3.7 Consensus size: 105
23072522 GGAAAAAGAA
* *
23072532 GAAAAAGGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCTAGTAC----AAAAAA
1 GAAAAATGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTAAAAAA
*
23072593 AAATTCTTTTTTTTCGTGTCAGAATCAAATATCAATATAC
66 AAATTCTTTTTTTTCGTGTCAGAATCAGATATCAATATAC
* *
23072633 GAAAAATGAAAAAAAAATTTTAGGTTCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTAAAA
1 GAAAAATGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC-AA-TTAAAA
*
23072698 AAAAATTTCTTTTTTTTCGTGTCAGAATCAGATATCAGTATAC
64 AAAAA-TTCTTTTTTTTCGTGTCAGAATCAGATATCAATATAC
* * * * *
23072741 GAAAAAAATAAAAAAAAAATTTTGGGTGCTGGCCTTTAAATGGCCGACACCCAATACAATTTAAA
1 G--AAAAATGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-TTAAA
*
23072806 AAAAAA--------TTT-GTGTCAAAATCAGATATCAATATAC
63 AAAAAATTCTTTTTTTTCGTGTCAGAATCAGATATCAATATAC
* ** *
23072840 GAAAAA--AATTTAAAATTTCTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTAAA
1 GAAAAATGAA--AAAAAAAT-TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTAAA
23072903 AAAAAATTC
63 AAAAAATTC
23072912 GTGTCAAAAT
Statistics
Matches: 241, Mismatches: 23, Indels: 31
0.82 0.08 0.11
Matches are distributed among these distances:
95 2 0.01
97 21 0.09
98 34 0.14
99 24 0.10
100 3 0.01
101 51 0.21
107 9 0.04
108 36 0.15
109 14 0.06
110 47 0.20
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (105 bp):
GAAAAATGAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTAAAAAA
AAATTCTTTTTTTTCGTGTCAGAATCAGATATCAATATAC
Found at i:23072930 original size:97 final size:99
Alignment explanation
Indices: 23072713--23072952 Score: 340
Period size: 97 Copynumber: 2.4 Consensus size: 99
23072703 TTTCTTTTTT
* * *
23072713 TTCGTGTCAGAATCAGATATCAGTATACGAAAAAAATAAAAAAAAAATTTTGGGTGCTGGCCTTT
1 TTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATTAAAAAAAAATTTTGGGTGCTGGCCTGT
23072778 AAATGGCCGACACCCAATACAATTTAAAAAAAAA
66 AAATGGCCGACACCCAATACAATTTAAAAAAAAA
* * * ****
23072812 TTTGTGTCAAAATCAGATATCAATATACGAAAAAAATTTAAAATTTCTTTT-GGTGCTGGCCTGT
1 TTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATTAAAAAAAAATTTTGGGTGCTGGCCTGT
* * *
23072876 CAATGGCCGGCACCCAGTACAA-TTAAAAAAAAA
66 AAATGGCCGACACCCAATACAATTTAAAAAAAAA
*
23072909 TTCGTGTCAAAATCAGATATCAGTATACGAATAAAATTAAAAAA
1 TTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATTAAAAAA
23072953 TATATATTTT
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
97 50 0.41
98 31 0.25
99 42 0.34
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (99 bp):
TTCGTGTCAAAATCAGATATCAGTATACGAAAAAAATTAAAAAAAAATTTTGGGTGCTGGCCTGT
AAATGGCCGACACCCAATACAATTTAAAAAAAAA
Found at i:23073053 original size:86 final size:85
Alignment explanation
Indices: 23072880--23073044 Score: 206
Period size: 92 Copynumber: 1.9 Consensus size: 85
23072870 GCCTGTCAAT
*
23072880 GGCCGGCACCCAGTACAATTAAAAAAAAATTCGTGTCAAAATCAGATATCAGTATACGAATAAAA
1 GGCCGGCACCCAGTACAATTAAAAAAAAATTCGTGTCAAAATCAGATACCAGTATACGAATAAAA
23072945 TTAAAAAATATATATTTTTTG
66 TTAAAAAATATATA-TTTTTG
* * *
23072966 GGCCGGCACCCAGTACAAATTAAAAAAAATTCTTTTTCGTGTCAGAATCGGATACCAGTATACGA
1 GGCCGGCACCCAGTAC-AATTAAAAAAAA-----ATTCGTGTCAAAATCAGATACCAGTATACGA
*
23073031 A-AAATATAAAAAAA
60 ATAAA-ATTAAAAAA
23073045 AATTTTGGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
86 16 0.24
87 12 0.18
91 3 0.04
92 36 0.54
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (85 bp):
GGCCGGCACCCAGTACAATTAAAAAAAAATTCGTGTCAAAATCAGATACCAGTATACGAATAAAA
TTAAAAAATATATATTTTTG
Found at i:23073200 original size:116 final size:115
Alignment explanation
Indices: 23072998--23073210 Score: 320
Period size: 116 Copynumber: 1.8 Consensus size: 115
23072988 AAAAAAATTC
* * *
23072998 TTTTTCGTGTCAGAATCGGATACCAGTATACGAAAAATATAAAAAAAAATTTTGGGTGCTGACCT
1 TTTTTCGTGTCAAAATCAGATACCAATATACGAAAAATATAAAAAAAAATTTTGGGTGCTGACCT
23073063 GTCAACGGCCGGCACCCAGTACAAT-TTTAAAACAATTTTTTTTTTCATT
66 GTCAACGGCCGGCACCCAGTACAATCTTTAAAACAATTTTTTTTTTCATT
* * * *
23073112 TTTTTCGTGTCAAAATCAGATATCAATATACGAAAAAAATTTAAAAAAAATTTTTGGGTGCTGGC
1 TTTTTCGTGTCAAAATCAGATACCAATATACG--AAAAATATAAAAAAAAATTTTGGGTGCTGAC
* *
23073177 CTGTTAATGGCCGGCACCCAGTACAATCTTTAAA
64 CTGTCAACGGCCGGCACCCAGTACAATCTTTAAA
23073211 TTTTTTTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
114 28 0.32
116 53 0.61
117 6 0.07
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (115 bp):
TTTTTCGTGTCAAAATCAGATACCAATATACGAAAAATATAAAAAAAAATTTTGGGTGCTGACCT
GTCAACGGCCGGCACCCAGTACAATCTTTAAAACAATTTTTTTTTTCATT
Found at i:23073462 original size:111 final size:107
Alignment explanation
Indices: 23073252--23073955 Score: 869
Period size: 111 Copynumber: 6.4 Consensus size: 107
23073242 TATCCAAATT
** * *
23073252 TTTTTTTTGATTTTTTTCGTATACTGATATCTGATTTTGACATGAAAAAAAAG-ATTTTTTTTTA
1 TTTTTTTAAATTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGAATTTTTTTTAA
* *
23073316 ATTGTACTGGGTGTCGGCCATTGACAGGCCAGCACCCAAAAA
66 ATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAA
*
23073358 TTTTTTTAAATTTTTTTCGTATACTGATATCTGATTTTGACTCGAAAAAAAAAAGAAAGTTTTTT
1 TTTTTTTAAATTTTTTTCGTATACTGATATCTGATTTTGACACG--AAAAAAAAG-AA-TTTTTT
*
23073423 TTAAATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAT
62 TTAAATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAA
23073469 TTTTTTTAAAATTTTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGAA-TTTTTT
1 TTTTTTT-AAA--TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGAATTTTTTT
** * **
23073533 TAAATTGTACTGGGTGCCGGCCATTGGTAGGCCAGCACCCAAATT
63 TAAATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAA
** * * * * *
23073578 TTTTTTTTTACTTTTTTCCTATACTGATATCTGATTCTGACATGAAAAAAAAGAAAATTTTTTTA
1 TTTTTTTAAATTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAG-AATTTTTTTTA
*
23073643 AATTGTACTGGGTGCCGGCCATTGACAAACCAGCACCCAAAAAAA
65 AATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCC--AAAAA
23073688 TTTTTTTACAATTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAACAAAGAATTTTTTT
1 TTTTTTTA-AATTTTTTTCGTATACTGATATCTGATTTTGACACG-AAAAA-AAAGAA--TTTTT
*
23073753 TTTAAATTTGTACTGGGTGCCAGCCATTGACA-AGCCAGCACCCAAAAA
61 TTTAAA-TTGTACTGGGTGCCGGCCATTGACAGA-CCAGCACCCAAAAA
* * *
23073801 TATTTTTTAAAATTTTTTTTCGTATATTAATATCTGATTTTGACACGAAAAAAATGAATTTTTTT
1 T-TTTTTT-AAA-TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGAATTTTTTT
* * * * **
23073866 TAAAATTATATTGGGTGCCGGCCATTGACAGGCCAACA-CCAAATT
63 T-AAATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAA
** *
23073911 TTTTATTTTTA-TTTTTTCGTATACTGATATCTGATTCTGACACGA
1 TTTT-TTTAAATTTTTTTCGTATACTGATATCTGATTTTGACACGA
23073956 TTTTTTTTTT
Statistics
Matches: 525, Mismatches: 48, Indels: 49
0.84 0.08 0.08
Matches are distributed among these distances:
106 79 0.15
107 33 0.06
108 52 0.10
109 58 0.11
110 20 0.04
111 123 0.23
112 22 0.04
113 15 0.03
114 57 0.11
115 66 0.13
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (107 bp):
TTTTTTTAAATTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGAATTTTTTTTAA
ATTGTACTGGGTGCCGGCCATTGACAGACCAGCACCCAAAAA
Found at i:23073500 original size:220 final size:217
Alignment explanation
Indices: 23073262--23074004 Score: 919
Period size: 220 Copynumber: 3.4 Consensus size: 217
23073252 TTTTTTTTGA
*
23073262 TTTTTTTCGTATACTGATATCTGATTTTGACATGAAAAAAAAGATTTTTTTTTAA-TTGTACTGG
1 TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGATTTTTTTTTAATTTGTACTGG
*
23073326 GTGTCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTAAATTTTTTTCGTATACTGATATCTG
66 GTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTAAATTTTTTTCGTATACTGATATCTG
23073391 ATTTTGACTCGAAAAAAAAAAGAAAGTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGAC
131 ATTTTGACTCG--AAAAAAAAGAAA-TTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGAC
23073456 CAGCACCCAAAATTTTTTTTAAAATT
193 CAGCACCCAAAATTTTTTTT-AAATT
* *
23073482 TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGA-ATTTTTTTAAATTGTACTGG
1 TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGATTTTTTTTTAATTTGTACTGG
** ** ** * *
23073546 GTGCCGGCCATTGGTAGGCCAGCACCCAAATTTTTTTTTTTACTTTTTTCCTATACTGATATCTG
66 GTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTAAATTTTTTTCGTATACTGATATCTG
* * *
23073611 ATTCTGACAT-GAAAAAAAAGAAAATTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAAACCA
131 ATTTTGAC-TCGAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGACCA
*
23073675 GCACCCAAAAAAATTTTTTTACAA--
195 GCACCC--AAAATTTTTTTTA-AATT
23073699 TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAACAAAGAATTTTTTTTTTAAATTTGT
1 TTTTTTTCGTATACTGATATCTGATTTTGACACG-AAAAA-AAAG-A-TTTTTTTTT-AATTTGT
* * *
23073764 ACTGGGTGCCAGCCATTGACAAGCCAGCACCCAAAAATATTTTTTAAAATTTTTTTTCGTATATT
61 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAT-TTTTTT-AAA-TTTTTTTCGTATACT
* * * * *
23073829 AATATCTGATTTTGACACGAAAAAAATG-AATTTTTTTTAAAATTATATTGGGTGCCGGCCATTG
123 GATATCTGATTTTGACTCGAAAAAAAAGAAATTTTTTTT-AAATTGTACTGGGTGCCGGCCATTG
* *
23073893 ACAGGCCAACA-CC-AAATTTTTTATT---TT
187 ACAGACCAGCACCCAAAATTTTTT-TTAAATT
* **
23073920 TATTTTTTCGTATACTGATATCTGATTCTGACACG-------ATTTTTTTTTTTAATTTGTACTG
1 T-TTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGATTTTTTTTTAATTTGTACTG
*
23073978 GGTGCCGGCCATTGATAGGCCAGCACC
65 GGTGCCGGCCATTGACAGGCCAGCACC
23074005 AATTTTTTTT
Statistics
Matches: 458, Mismatches: 45, Indels: 50
0.83 0.08 0.09
Matches are distributed among these distances:
210 35 0.08
211 9 0.02
213 1 0.00
217 79 0.17
218 18 0.04
219 26 0.06
220 117 0.26
221 2 0.00
222 47 0.10
223 40 0.09
224 6 0.01
225 12 0.03
226 66 0.14
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (217 bp):
TTTTTTTCGTATACTGATATCTGATTTTGACACGAAAAAAAAGATTTTTTTTTAATTTGTACTGG
GTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTAAATTTTTTTCGTATACTGATATCTG
ATTTTGACTCGAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGACCAG
CACCCAAAATTTTTTTTAAATT
Found at i:23076957 original size:22 final size:22
Alignment explanation
Indices: 23076922--23076964 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
23076912 TATTAGTTAC
*
23076922 ATTTTAATTTTTAAT-AATTAT
1 ATTTTAAGTTTTAATGAATTAT
23076943 ATTTTACAGTTTTAATGAATTA
1 ATTTTA-AGTTTTAATGAATTA
23076965 ATTGAACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (22 bp):
ATTTTAAGTTTTAATGAATTAT
Found at i:23079733 original size:69 final size:70
Alignment explanation
Indices: 23079657--23079786 Score: 192
Period size: 70 Copynumber: 1.9 Consensus size: 70
23079647 TATTAAAAAA
* * * * *
23079657 TATATTAAAATTTTTAAATTTGGTTATACTTAA-ATTTT-TTTAATATGTTTAAAATTTTAATAT
1 TATATTAAAA-ATTTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTAATAT
23079720 ATTAAG
65 ATTAAG
23079726 TATATTAAAAATTTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTAA
1 TATATTAAAAATTTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTAA
23079787 AATTTTTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
68 19 0.35
69 15 0.28
70 20 0.37
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (70 bp):
TATATTAAAAATTTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTAATATA
TTAAG
Found at i:23079813 original size:17 final size:16
Alignment explanation
Indices: 23079765--23079815 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 16
23079755 CAACATTTTC
23079765 TTTAACATATTTAAAAT
1 TTTAA-ATATTTAAAAT
*
23079782 TTTAAAATTTTTTAAAAT
1 TTT-AAA-TATTTAAAAT
23079800 TTTAAATATATTAAAA
1 TTTAAATAT-TTAAAA
23079816 AAAATTCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 2 0.07
17 13 0.45
18 14 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTAAATATTTAAAAT
Found at i:23079816 original size:18 final size:17
Alignment explanation
Indices: 23079765--23079815 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
23079755 CAACATTTTC
*
23079765 TTTAACATATTTAAAAT
1 TTTAAAATATTTAAAAT
*
23079782 TTTAAAATTTTTTAAAAT
1 TTTAAAA-TATTTAAAAT
23079800 TTT-AAATATATTAAAA
1 TTTAAAATAT-TTAAAA
23079816 AAAATTCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 2 0.07
17 15 0.52
18 12 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAAAATATTTAAAAT
Found at i:23079853 original size:9 final size:9
Alignment explanation
Indices: 23079839--23079900 Score: 51
Period size: 9 Copynumber: 7.3 Consensus size: 9
23079829 CATATTAAAA
23079839 AAATATATT
1 AAATATATT
23079848 AAATATATT
1 AAATATATT
*
23079857 AAA-ATTTT
1 AAATATATT
23079865 AAA-ATA-T
1 AAATATATT
* *
23079872 ATATATTTT
1 AAATATATT
*
23079881 AAAAAT-TT
1 AAATATATT
*
23079889 TAATATATT
1 AAATATATT
23079898 AAA
1 AAA
23079901 ATTTTAAAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.07
8 17 0.41
9 21 0.51
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AAATATATT
Found at i:23079868 original size:8 final size:8
Alignment explanation
Indices: 23079855--23079911 Score: 53
Period size: 8 Copynumber: 7.0 Consensus size: 8
23079845 ATTAAATATA
23079855 TTAAAATT
1 TTAAAATT
23079863 TTAAAA-T
1 TTAAAATT
* *
23079870 ATATATATT
1 TTA-AAATT
23079879 TTAAAAATT
1 TT-AAAATT
* *
23079888 TTAATATA
1 TTAAAATT
23079896 TTAAAATT
1 TTAAAATT
23079904 TTAAAATT
1 TTAAAATT
23079912 GATTATACTT
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
7 3 0.08
8 26 0.68
9 8 0.21
10 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
TTAAAATT
Found at i:23079885 original size:25 final size:25
Alignment explanation
Indices: 23079843--23079909 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
23079833 TTAAAAAAAT
*
23079843 ATATTAAATATATT-AAAATTTTAAA
1 ATATTAAA-ATTTTAAAAATTTTAAA
* *
23079868 ATA-TATATATTTTAAAAATTTTAAT
1 ATATTA-AAATTTTAAAAATTTTAAA
23079893 ATATTAAAATTTTAAAA
1 ATATTAAAATTTTAAAA
23079910 TTGATTATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 6 0.17
25 27 0.77
26 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
ATATTAAAATTTTAAAAATTTTAAA
Found at i:23079894 original size:17 final size:16
Alignment explanation
Indices: 23079840--23079907 Score: 57
Period size: 17 Copynumber: 4.1 Consensus size: 16
23079830 ATATTAAAAA
*
23079840 AATATATTAAATATATT
1 AATATATTAAA-ATTTT
* * *
23079857 AAAATTTTAAAA-TAT
1 AATATATTAAAATTTT
*
23079872 ATATATTTTAAAAATTTT
1 A-ATATATT-AAAATTTT
23079890 AATATATTAAAATTTT
1 AATATATTAAAATTTT
23079906 AA
1 AA
23079908 AATTGATTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
15 2 0.05
16 17 0.41
17 19 0.46
18 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AATATATTAAAATTTT
Found at i:23080043 original size:165 final size:165
Alignment explanation
Indices: 23079721--23080042 Score: 434
Period size: 165 Copynumber: 1.9 Consensus size: 165
23079711 TTTTAATATA
*
23079721 TTAAGTATATTAAAAATTTAAAATTGGTTATACTCAACATTTTCTTTAACATATTTAAAATTTTA
1 TTAAGTATATTAAAAATTTAAAATTGATTATACTCAACATTTTCTTTAACATATTTAAAATTTTA
23079786 AAATTTTTTAAAATTTTAAATATATTAAAAAAAATTCTCTTTACATATTAAAAAAATATATTAAA
66 AAATTTTTTAAAATTTTAAATATATTAAAAAAAATTCTCTTTACATATTAAAAAAATATATTAAA
23079851 TATATTAAAATTTTAAAATATATATATTTTAAAAATT
131 TATATTAAAATTTT--AATATATATATTTTAAAAATT
* * * ** *
23079888 TTAA-TATATTAAAATTTTAAAATTGATTATACTTAACATTTT-TTTAATATATTTAATTTTTTT
1 TTAAGTATATTAAAAATTTAAAATTGATTATACTCAACATTTTCTTTAACATATTTAAAATTTTA
* ** * * *
23079951 AAGTTTTTTAAAATTTTAAATATATTAAGAAAAGCTTTTTTGACTTTACCTATTAAAAATATATA
66 AAATTTTTTAAAATTTTAAATATATTAA-AAAA--AATTCT--CTTTACATATTAAAAAAATATA
*
23080016 TTAAGTATATTAAAATTTTAA-ATATAT
126 TTAAATATATTAAAATTTTAATATATAT
23080043 TAAAATTTTA
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
165 44 0.32
166 39 0.29
167 10 0.07
168 5 0.04
170 38 0.28
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (165 bp):
TTAAGTATATTAAAAATTTAAAATTGATTATACTCAACATTTTCTTTAACATATTTAAAATTTTA
AAATTTTTTAAAATTTTAAATATATTAAAAAAAATTCTCTTTACATATTAAAAAAATATATTAAA
TATATTAAAATTTTAATATATATATTTTAAAAATT
Found at i:23080062 original size:18 final size:17
Alignment explanation
Indices: 23080016--23080054 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
23080006 AAAATATATA
*
23080016 TTAAGTATATTAAAATT
1 TTAAATATATTAAAATT
23080033 TTAAATATATTAAAATT
1 TTAAATATATTAAAATT
23080050 TTAAA
1 TTAAA
23080055 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAATATATTAAAATT
Found at i:23080089 original size:20 final size:21
Alignment explanation
Indices: 23080056--23080095 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
23080046 AATTTTAAAA
*
23080056 TTAATTATACTTAATATTTTT
1 TTAATTATACTTAAAATTTTT
*
23080077 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
23080096 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTATACTTAAAATTTTT
Found at i:23080910 original size:26 final size:28
Alignment explanation
Indices: 23080874--23080934 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
23080864 AAAAATAACT
23080874 AAAATATTAT-AA-TTTTTTTATTTACC
1 AAAATATTATAAATTTTTTTTATTTACC
23080900 AAAATATTATAAATTTTTTTTATTTACC
1 AAAATATTATAAATTTTTTTTATTTACC
23080928 AAAATAT
1 AAAATAT
23080935 ATCAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 10 0.30
27 2 0.06
28 21 0.64
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (28 bp):
AAAATATTATAAATTTTTTTTATTTACC
Found at i:23081006 original size:27 final size:27
Alignment explanation
Indices: 23080976--23081027 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
23080966 GGCCAATCAC
23080976 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
23081003 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
23081028 GACTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.13
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:23081337 original size:19 final size:19
Alignment explanation
Indices: 23081313--23081408 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
23081303 TCTAATTAAG
*
23081313 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
23081332 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
*
23081350 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
23081369 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
23081387 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
23081406 TAA
1 TAA
23081409 AATATAAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:23081354 original size:37 final size:37
Alignment explanation
Indices: 23081313--23081408 Score: 183
Period size: 37 Copynumber: 2.6 Consensus size: 37
23081303 TCTAATTAAG
23081313 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
23081350 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
23081387 TAATAACTCTATTTTCATTTAA
1 TAATAACTCTATTTTAATTTAA
23081409 AATATAAAAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:23081635 original size:28 final size:27
Alignment explanation
Indices: 23081573--23081637 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
23081563 TAAGGGAATA
*
23081573 TATTAAATTTATAAAATTAAAATAGTT
1 TATTAAATTTATAAAATTAAAATAGGT
* *
23081600 TAATTTAATTTTTTAAAATTAAAATAGAGT
1 T-A-TTAAATTTATAAAATTAAAATAG-GT
23081630 TATTAAAT
1 TATTAAAT
23081638 GAGAATAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 6 0.19
29 22 0.71
30 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (27 bp):
TATTAAATTTATAAAATTAAAATAGGT
Found at i:23081637 original size:19 final size:19
Alignment explanation
Indices: 23081615--23081678 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
23081605 TAATTTTTTA
23081615 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
23081634 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
*
23081652 ATATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
23081671 AAATTAAA
1 AAATTAAA
23081679 CTATTTTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:23082015 original size:27 final size:27
Alignment explanation
Indices: 23081956--23082015 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
23081946 CATTTTAGTC
* *
23081956 CATTGGCACCATTGGTGCCGCCAATCT
1 CATTGGCACCATTGATGCCGCCAATAT
* *
23081983 CTTTGGCACCTTTGATGCCGCCAATAT
1 CATTGGCACCATTGATGCCGCCAATAT
*
23082010 GATTGG
1 CATTGG
23082016 ACTGATCATG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.30
Consensus pattern (27 bp):
CATTGGCACCATTGATGCCGCCAATAT
Found at i:23085110 original size:202 final size:202
Alignment explanation
Indices: 23084764--23085163 Score: 800
Period size: 202 Copynumber: 2.0 Consensus size: 202
23084754 CATCTTTTCA
23084764 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
1 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
23084829 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
66 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
23084894 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
131 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
23084959 ATTTTGG
196 ATTTTGG
23084966 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
1 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
23085031 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
66 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
23085096 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
131 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
23085161 ATT
196 ATT
23085164 ATCCACACCA
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 198 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (202 bp):
TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
ATTTTGG
Found at i:23086671 original size:29 final size:29
Alignment explanation
Indices: 23086637--23086692 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
23086627 AATAAAAATC
* *
23086637 ATAGGTTAATAGCTTATTTAACTACAAAA
1 ATAGGTTAAGAGCTTATTTAAATACAAAA
* *
23086666 ATAGGTTGAGGGCTTATTTAAATACAA
1 ATAGGTTAAGAGCTTATTTAAATACAA
23086693 TGTAGTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (29 bp):
ATAGGTTAAGAGCTTATTTAAATACAAAA
Found at i:23089871 original size:593 final size:593
Alignment explanation
Indices: 23088709--23090494 Score: 3488
Period size: 592 Copynumber: 3.0 Consensus size: 593
23088699 TGGGTTAGCA
23088709 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
1 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
23088774 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
66 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
23088839 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGGAAGTGAACCCTCTCTCCGC
131 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGG-AGTGAACCCTCTCTCCGC
23088904 ACCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATC
195 ACCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATC
23088969 CAAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCA
260 CAAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCA
23089034 GGTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGG
325 GGTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGG
23089099 AAACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAG
390 AAACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAG
23089164 AAAACACCCAAAAACAGAGAAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATG
455 AAAACACCCAAAAACAGAGAAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATG
23089229 ACAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATACAG
520 ACAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATACAG
23089294 AATTTGAGC
585 AATTTGAGC
23089303 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
1 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
23089368 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
66 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
*
23089433 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGGAGTGAACCCTCTCTCCACA
131 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGGAGTGAACCCTCTCTCCGCA
23089498 CCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATCC
196 CCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATCC
23089563 AAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCAG
261 AAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCAG
23089628 GTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGGA
326 GTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGGA
23089693 AACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAGA
391 AACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAGA
23089758 AAACACCCAAAAACAGAGAGAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATG
456 AAACACCCAAAAACAGAGA-AAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATG
23089823 ACAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAA---CCCCCCCCCAGAAAATACAG
520 ACAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATACAG
23089885 AATTTGAGC
585 AATTTGAGC
23089894 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
1 TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
23089959 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
66 CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
23090024 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGGGAGTGAACCCTCTCTCCGC
131 TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCAT-GGGAGTGAACCCTCTCTCCGC
23090089 ACCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATC
195 ACCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATC
23090154 CAAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCA
260 CAAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCA
23090219 GGTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGG
325 GGTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGG
23090284 AAACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAG
390 AAACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAG
23090349 AAAACACCCAAAAACAGAGAAAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAAT
455 AAAACACCCAAAAACAGAG-AAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAAT
23090414 GACAAAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATA
519 GAC--AGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATA
23090479 CAGAATTTGAGC
582 CAGAATTTGAGC
23090491 TTTT
1 TTTT
23090495 GAATGAATGA
Statistics
Matches: 1182, Mismatches: 2, Indels: 13
0.99 0.00 0.01
Matches are distributed among these distances:
591 202 0.17
592 346 0.29
593 298 0.25
594 303 0.26
597 33 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (593 bp):
TTTTCATAGCCCAGTAATCTCATCAAGATGTCGATCCATGATCTGAGAGAGTGTCTCCAGAAATG
CAGCTTCACTTGTGCCAGGAAGCACGGAATCCTGTGCCTCTTGGACCATTTGCTCAATTGGAGAT
TCCTCCTTCAAATTCTCCCTGCACATTATACTTCCAATCGCATGGGAGTGAACCCTCTCTCCGCA
CCCTTTTTGAGGAGCATGGTGGAGATGCGGAGAGTGCGTGCGCACTCTGGTGGCATATCCCATCC
AAGGAATTTCAAAAGGGAAATATCTTCTTCAGCATCCAATGATTTTATATATTCAAGTGTCTCAG
GTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATGTGCAATCTTCAAACTATGGA
AACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGACGATATGAGAAAAATACAGA
AAACACCCAAAAACAGAGAAAAAAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGA
CAGTTTAATGATACACTCATAAACTCTATACAAGATGGAAACCCCCCCCCCCCAGAAAATACAGA
ATTTGAGC
Found at i:23090551 original size:100 final size:102
Alignment explanation
Indices: 23090373--23090579 Score: 391
Period size: 100 Copynumber: 2.0 Consensus size: 102
23090363 CAGAGAAAAA
*
23090373 AAAAGACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGACAAAGTTTAATGATACACTCAT
1 AAAATACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGACAAAGTTTAATGATACACTCAT
23090438 AAACTCTATACAAGATGGAAA-CCCCCCCCC-CCCAG
66 AAACTCTATACAAGATGGAAATCCCCCCCCCTCCCAG
23090473 AAAATACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGACAAAGTTTAATGATACACTCAT
1 AAAATACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGACAAAGTTTAATGATACACTCAT
23090538 AAACTCTATACAAGATGGAAATCCCCCCCCCTCCCAG
66 AAACTCTATACAAGATGGAAATCCCCCCCCCTCCCAG
23090575 AAAAT
1 AAAAT
23090580 TTGGGCACAG
Statistics
Matches: 104, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
100 85 0.82
101 9 0.09
102 10 0.10
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.22
Consensus pattern (102 bp):
AAAATACAGAATTTGAGCTTTTGAATGAATGAAACAAAAATGACAAAGTTTAATGATACACTCAT
AAACTCTATACAAGATGGAAATCCCCCCCCCTCCCAG
Found at i:23094470 original size:3 final size:3
Alignment explanation
Indices: 23094464--23094491 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
23094454 ACTTAAATTT
23094464 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23094492 ACCTTCCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23097782 original size:66 final size:65
Alignment explanation
Indices: 23097700--23097884 Score: 183
Period size: 66 Copynumber: 2.8 Consensus size: 65
23097690 GTTAGTAGCC
*
23097700 TCACACGGCCTAGCACACGGGCGTGTGGCTTGACCATGTAACACAAATCAGTATAAC-CTCCAAT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTG-CCATGTAACACAAATCAGTAT-ACTCACCAAT
23097764 TT
64 TT
* * * *** * * *
23097766 TCACACGGCCTAGCACATGGGCATGTGGCTTGGCAGTGTCTTACAAGTCAGTATGCTCACCATTT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTGCCA-TGTAACACAAATCAGTATACTCACCAATT
23097831 T
65 T
* * * * * *
23097832 TCACATGGCCTAGCACACGAGTGTGTAGCTTGGCCATGTGACCCAAATCAGTA
1 TCACACGGCCTAGCACACGGGCGTGTGGCTT-GCCATGTAACACAAATCAGTA
23097885 ATCTTACTAG
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
65 3 0.03
66 88 0.94
67 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (65 bp):
TCACACGGCCTAGCACACGGGCGTGTGGCTTGCCATGTAACACAAATCAGTATACTCACCAATTT
Found at i:23100193 original size:23 final size:23
Alignment explanation
Indices: 23100162--23100237 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
23100152 AGTGTTATTG
23100162 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
23100185 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23100208 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23100231 ATCAGTG
1 ATCAGTG
23100238 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23114642 original size:3 final size:3
Alignment explanation
Indices: 23114634--23114665 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
23114624 ATCACATGTT
23114634 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23114666 TGGATGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:23118933 original size:3 final size:3
Alignment explanation
Indices: 23118925--23118956 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
23118915 ATCACATGTT
23118925 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23118957 TGGATGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.