Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 84 of 199
Found at i:23679487 original size:34 final size:34
Alignment explanation
Indices: 23679447--23679521 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
23679437 CTAACAAACT
*
23679447 CTAACAAA-TTCAACTTCTTACTCGTACTAACAAG
1 CTAACAAACTT-AACTTCTTACTCCTACTAACAAG
23679481 CTAACAAACTTAACTTCTTACTCCTACTAACAAG
1 CTAACAAACTTAACTTCTTACTCCTACTAACAAG
23679515 CTAACAA
1 CTAACAA
23679522 TCTCCTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (34 bp):
CTAACAAACTTAACTTCTTACTCCTACTAACAAG
Found at i:23689147 original size:20 final size:20
Alignment explanation
Indices: 23689124--23689166 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
23689114 TAAATATATT
*
23689124 TATTATGTT-TTATTATTATA
1 TATTATATTATTA-TATTATA
23689144 TATTATATTATTATATTATA
1 TATTATATTATTATATTATA
23689164 TAT
1 TAT
23689167 AAAGTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATATTATTATATTATA
Found at i:23689158 original size:13 final size:13
Alignment explanation
Indices: 23689094--23689164 Score: 55
Period size: 13 Copynumber: 5.8 Consensus size: 13
23689084 GTTTAATAAA
23689094 TATATTATATTAT
1 TATATTATATTAT
* * *
23689107 TA-AATA-ATAAA
1 TATATTATATTAT
23689118 TATATT-TATTAT
1 TATATTATATTAT
23689130 GT-T-TTATTATTA-
1 -TATATTA-TATTAT
23689142 TATATTATATTAT
1 TATATTATATTAT
23689155 TATATTATAT
1 TATATTATAT
23689165 ATAAAGTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
11 8 0.18
12 15 0.34
13 21 0.48
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (13 bp):
TATATTATATTAT
Found at i:23689165 original size:15 final size:15
Alignment explanation
Indices: 23689117--23689166 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
23689107 TAAATAATAA
*
23689117 ATATATTTATTATGTT
1 ATATA-TTATTATATT
23689133 -T-TATTATTATA-T
1 ATATATTATTATATT
23689145 ATTATATTATTATATT
1 A-TATATTATTATATT
23689161 ATATAT
1 ATATAT
23689167 AAAGTAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
12 1 0.03
13 7 0.24
14 3 0.10
15 16 0.55
16 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
ATATATTATTATATT
Found at i:23689982 original size:36 final size:36
Alignment explanation
Indices: 23689945--23690034 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 36
23689935 ATGTGTGGAA
*
23689945 TTGAAATGAATAT-TGACTTGAAAATGGAAAAGTGAAT
1 TTGAAATGAAT-TGTGA-TTGAAAATGAAAAAGTGAAT
* *
23689982 TTTAAATTGAATTGTGATTGAAAGTGAAAAAGTGAAT
1 TTGAAA-TGAATTGTGATTGAAAATGAAAAAGTGAAT
* *
23690019 TTGAATTGAAATGTGA
1 TTGAAATGAATTGTGA
23690035 AATTGGAGAC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
36 9 0.20
37 28 0.62
38 8 0.18
ACGTcount: A:0.43, C:0.01, G:0.22, T:0.33
Consensus pattern (36 bp):
TTGAAATGAATTGTGATTGAAAATGAAAAAGTGAAT
Found at i:23697243 original size:42 final size:44
Alignment explanation
Indices: 23697167--23697340 Score: 154
Period size: 48 Copynumber: 3.8 Consensus size: 44
23697157 TACGTGGAAA
* * * *
23697167 TCTCATATCGATGCAAATAGCCCAGCTATGGTCTTACACG-AA-G
1 TCTCATATCGATGC-CATATCCCAGATATGGTCTTACACGAAATC
*
23697210 TCTCATATCGATGCCATATCCCAGATATGGTCTTATACGAAATC
1 TCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATC
* **
23697254 TCAAATCAATATCGATGCCATATCCCAGATATGGTCTTATACGGGATC
1 TC---TC-ATATCGATGCCATATCCCAGATATGGTCTTACACGAAATC
* **
23697302 CCAAATCGATGCCGATGCCATATCCCAGATATGGTCTTA
1 TC---TC-ATATCGATGCCATATCCCAGATATGGTCTTA
23697341 TACAGGATCT
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
42 21 0.18
43 16 0.14
44 2 0.02
47 2 0.02
48 73 0.64
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
TCTCATATCGATGCCATATCCCAGATATGGTCTTACACGAAATC
Found at i:23697285 original size:48 final size:48
Alignment explanation
Indices: 23697214--23697363 Score: 223
Period size: 48 Copynumber: 3.1 Consensus size: 48
23697204 ACGAAGTCTC
*
23697214 ATATCGATGCCATATCCCAGATATGGTCTTATACGAAATCTCAAATCA
1 ATATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCA
* * *
23697262 ATATCGATGCCATATCCCAGATATGGTCTTATACGGGATCCCAAATCG
1 ATATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCA
**
23697310 ATGCCGATGCCATATCCCAGATATGGTCTTATAC-AGGATCTCAAATCA
1 ATATCGATGCCATATCCCAGATATGGTCTTATACGA-GATCTCAAATCA
23697358 AT-TCGA
1 ATATCGA
23697364 CAATATATAT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
47 3 0.03
48 88 0.97
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (48 bp):
ATATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCA
Found at i:23699921 original size:41 final size:42
Alignment explanation
Indices: 23699811--23699925 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 42
23699801 TTATTAATTT
* *
23699811 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTG
1 TAAA-GTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATA
* * * *
23699854 TGAAAGGGGTTTCTATGTGCTAATTCC-CCGTATCAC-TGAATA
1 T-AAAGTGGTTGCTAAGTGCTGATTCCACCGTATC-CTTGAATA
23699896 T-AAGTTGGTTGCTAAGTGCTGATTCCACCG
1 TAAAG-TGGTTGCTAAGTGCTGATTCCACCG
23699926 AGTAACGGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.05
41 17 0.29
42 15 0.26
43 20 0.34
44 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
TAAAGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATA
Found at i:23702887 original size:21 final size:21
Alignment explanation
Indices: 23702861--23702902 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23702851 GAAATTGAAA
23702861 TGTTTTAATTTCACA-TTAATT
1 TGTTTTAATTTC-CATTTAATT
23702882 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
23702903 ACAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:23706910 original size:16 final size:16
Alignment explanation
Indices: 23706866--23706918 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 16
23706856 TGTAGTTGAT
23706866 TTTAATAAGATTATTAA
1 TTTAATAAGATTATT-A
23706883 TATAAATAATAAGATTATTA
1 T-T---TAATAAGATTATTA
23706903 TTTAATAAGATTATTA
1 TTTAATAAGATTATTA
23706919 ATATAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
16 14 0.44
17 1 0.03
18 1 0.03
19 1 0.03
20 2 0.06
21 13 0.41
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TTTAATAAGATTATTA
Found at i:23706999 original size:21 final size:21
Alignment explanation
Indices: 23706916--23707001 Score: 58
Period size: 21 Copynumber: 4.3 Consensus size: 21
23706906 AATAAGATTA
23706916 TTAATATAAATAATAAATAAT
1 TTAATATAAATAATAAATAAT
* * * *
23706937 TTAAAATAATTATTTAAT-AT
1 TTAATATAAATAATAAATAAT
* *
23706957 TGT--TAT--TTAATAAGATTA-
1 T-TAATATAAATAATAA-ATAAT
23706975 TTAATATAAATAATAAATAAT
1 TTAATATAAATAATAAATAAT
23706996 TTAATA
1 TTAATA
23707002 ATAATTTAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
17 6 0.12
18 3 0.06
19 6 0.12
20 6 0.12
21 27 0.56
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
TTAATATAAATAATAAATAAT
Found at i:23707004 original size:11 final size:11
Alignment explanation
Indices: 23706985--23707017 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
23706975 TTAATATAAA
23706985 TAATAAATAATT
1 TAAT-AATAATT
23706997 TAATAATAATT
1 TAATAATAATT
23707008 TAA-AATAATT
1 TAATAATAATT
23707018 ATTATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 7 0.33
11 10 0.48
12 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAATAATAATT
Found at i:23707098 original size:55 final size:55
Alignment explanation
Indices: 23706980--23707097 Score: 141
Period size: 56 Copynumber: 2.1 Consensus size: 55
23706970 GATTATTAAT
*
23706980 ATAAATAATAAATAATTTAATAATAATTTAAAATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAATAATTTAAAATAAATATTATTAAATATAATTTA
* * * *
23707036 ATAAAAATATATAATTTAATAA-AATTCTTAATATTAAATATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAATAATAA-T-TTAA-AATAAATATTATTAAATATAATTTA
23707092 ATAAAA
1 ATAAAA
23707098 TCATAATATA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
54 2 0.04
55 17 0.31
56 21 0.39
57 14 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAATAATTTAAAATAAATATTATTAAATATAATTTA
Found at i:23707128 original size:38 final size:39
Alignment explanation
Indices: 23707044--23707130 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 39
23707034 TAATAAAAAT
* * * * *
23707044 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAT
1 ATATAATTTAATAAAATTCATAATATTAAATACTATAAA
23707083 ATA-AATTTAATAAAA-TCATAATA-TATAATACTATAAA
1 ATATAATTTAATAAAATTCATAATATTA-AATACTATAAA
23707120 ATATAATTTAA
1 ATATAATTTAA
23707131 AATAATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 2 0.05
37 17 0.41
38 19 0.46
39 3 0.07
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.43
Consensus pattern (39 bp):
ATATAATTTAATAAAATTCATAATATTAAATACTATAAA
Found at i:23707172 original size:12 final size:12
Alignment explanation
Indices: 23707155--23707179 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23707145 AATATTTAAA
23707155 ATAAATATTCTT
1 ATAAATATTCTT
23707167 ATAAATATTCTT
1 ATAAATATTCTT
23707179 A
1 A
23707180 ATATTAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAAATATTCTT
Found at i:23707517 original size:12 final size:12
Alignment explanation
Indices: 23707500--23707525 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23707490 TGTATACAAG
23707500 GTTTATCATATT
1 GTTTATCATATT
23707512 GTTTATCATATT
1 GTTTATCATATT
23707524 GT
1 GT
23707526 ACAAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58
Consensus pattern (12 bp):
GTTTATCATATT
Found at i:23707552 original size:67 final size:67
Alignment explanation
Indices: 23707474--23707619 Score: 166
Period size: 67 Copynumber: 2.2 Consensus size: 67
23707464 AACTAAATAC
* * *
23707474 AATATTAATTACAGAATGTATACAAGGTTTATCATATTGTTTATCATATTGTACAAATTTTCTAT
1 AATA-TAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTAT
23707539 AAT
65 AAT
* * ** * * ** * *
23707542 ATTATAATTACCCTTTATTTAGATTATTTATCGTATTGTTTATCATATTGTTCAAATTTTCTATA
1 AATATAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTATA
23707607 AT
66 AT
23707609 AATATAATTAC
1 AATATAATTAC
23707620 CCTTTATTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
67 61 0.95
68 3 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.48
Consensus pattern (67 bp):
AATATAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTATA
AT
Found at i:23707620 original size:67 final size:67
Alignment explanation
Indices: 23707501--23707648 Score: 260
Period size: 67 Copynumber: 2.2 Consensus size: 67
23707491 GTATACAAGG
*
23707501 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATATTATAATTACCCTTTATTTAGAT
1 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
23707566 TA
66 TA
* *
23707568 TTTATCGTATTGTTTATCATATTGTTCAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
1 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
*
23707633 TG
66 TA
23707635 TTTATCATATTGTT
1 TTTATCATATTGTT
23707649 AAAATTTTCT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 76 1.00
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.53
Consensus pattern (67 bp):
TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
TA
Found at i:23709461 original size:77 final size:77
Alignment explanation
Indices: 23709347--23709509 Score: 290
Period size: 77 Copynumber: 2.1 Consensus size: 77
23709337 GAGGGAGAGA
*
23709347 GAGGGAGAGGGTGGAGGTGATTTTGTAGAAACAGCTTCTGTTGATGTTGGGAGGTCGATTTCGAC
1 GAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGTTGGGAGGTCGATTTCGAC
23709412 GATTTCCGGAGG
66 GATTTCCGGAGG
**
23709424 GAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGTTGGGAGGTCGATTTCGGT
1 GAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGTTGGGAGGTCGATTTCGAC
*
23709489 GATTTCGGGAGG
66 GATTTCCGGAGG
23709501 GAGGGAGAG
1 GAGGGAGAG
23709510 AGAGAGGCTG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 82 1.00
ACGTcount: A:0.21, C:0.09, G:0.43, T:0.27
Consensus pattern (77 bp):
GAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGTTGGGAGGTCGATTTCGAC
GATTTCCGGAGG
Found at i:23719330 original size:125 final size:125
Alignment explanation
Indices: 23719118--23719683 Score: 688
Period size: 125 Copynumber: 4.5 Consensus size: 125
23719108 GATAAAATCA
* * * * * * * ** *
23719118 AAGCAGTATGATTTATTAGAAGGATTTTTGAAGTTGCGCCCATATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
** *
23719183 AGGTCCTGGAAAAATAGGTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
* * * * *
23719243 AAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCGCGTCCTCGTGGACGTGCTTTTACTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
23719308 TGGTCCTGGAGAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
* * * *
23719368 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGATGCGCTTTTGCTACAAT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
23719433 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTCC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAA-AACGCTTC
* * * * ** *
23719494 AAGCAGTATGC-TAATTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACTTGCTTTTGCTATAG
1 AAGCAGGATGCTTTA-TGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* *
23719558 TTA-GTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 -TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
* * * *
23719618 TAGCAGGATGCTTTATGAGAAGAATTTGCGAAATTGCACCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
23719683 A
66 A
23719684 ACATGTTTGG
Statistics
Matches: 372, Mismatches: 65, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
123 2 0.01
124 56 0.15
125 212 0.57
126 100 0.27
127 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAACGCTTC
Found at i:23719641 original size:250 final size:250
Alignment explanation
Indices: 23719118--23719680 Score: 761
Period size: 250 Copynumber: 2.3 Consensus size: 250
23719108 GATAAAATCA
* * * * * ** * *
23719118 AAGCAGTATGATTTATTAGAAGGATTTTTGAAGTTGCGCCCATATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTTGCGCCCACGTGGACGCGCTTTTGCTACAAT
* * * * *
23719183 AGGTCCTGGAAAAATAGGTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTCAAGCA
66 AGGTCCTGAAAAAATAAGTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTCCAAGCA
* * *
23719248 GGATGCTTTGTGAGAAGAATTTGTGAAATCGCGTCCTCGTGGACGTGCTTTTACTACAGTTGGTC
131 GGATGCTATGTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGTGCTTTTACTACAGTTAGTC
* * * *
23719313 CTGGAGAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTTTAAAAAACGCTTC
196 CTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* *
23719368 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGATGCGCTTTTGCTACAAT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTTGCGCCCACGTGGACGCGCTTTTGCTACAAT
* * *
23719433 AGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTCCAAGC
66 AGGTCCTGAAAAAATAAGTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTCCAAGC
* * * * *
23719498 AGTATGCTAAT-TGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACTTGCTTTTGCTATAGTTAG
130 AGGATGCT-ATGTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGTGCTTTTACTACAGTTAG
*
23719562 TCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
194 TCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * *
23719618 TAGCAGGATGCTTTATGAGAAGAATTTGCGAAATTGCACCCACGTGGACGCGCTTTTGCTACA
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTTGCGCCCACGTGGACGCGCTTTTGCTACA
23719681 GTAACATGTT
Statistics
Matches: 272, Mismatches: 39, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
250 166 0.61
251 105 0.39
252 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTTGCGCCCACGTGGACGCGCTTTTGCTACAAT
AGGTCCTGAAAAAATAAGTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTCCAAGCA
GGATGCTATGTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGTGCTTTTACTACAGTTAGTC
CTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:23722924 original size:43 final size:43
Alignment explanation
Indices: 23722857--23723719 Score: 904
Period size: 43 Copynumber: 20.0 Consensus size: 43
23722847 TCAAATTATA
*
23722857 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGATTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * * * * *
23722900 TTAAAGCTAAGGATTTATGGTTTTAAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* *
23722944 TTTAGGTTAAGGGTTAGGGTTTTTATGTTAAGGGTTT-AGAGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAG-GTT
* * *
23722987 TTTAATTTAAGGGGTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23723030 TTAAAGTTAAGGGTCTAGGGTTTTAAAATTAA-GGTTTAAGGGT
1 TTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23723073 TTTAGGTTAAGGGTTAGGGTTTTTAGGTTAAGGGATTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * *
23723116 TTTAATTTAAGGGTTAGGATTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* *
23723159 TTTAAGTTAAGGGTCTAGGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* *
23723202 TTTAGGTTAAGGGTTAGGGTTTTTATGTTAAGGGTTT-AGGATT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGG-TT
* *
23723245 TTTAATTTAAAGGTTAGGG-TTTTAAGTTAAGGGTTT-AGAGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAG-GTT
* * *
23723287 TTTAAGTCAAGGGTCTAGGGTTTTAAAGTTAA-GGTTTATGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23723330 TTTAGGTTAAGGGTTAGGGTTTTTTAGTTTAGGGTTTAGGGTTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGG-TT
* * *
23723374 TTTAATTTAA-GGTTAGGGTTTTTAAGTTAATGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * *
23723416 TTTAAGTTAAGGGTCTAGAGTTTTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * *
23723459 TTCAAGTTAAGAGTTAGGGTTTTTAATTTAAGGGTTT-AGTGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAG-GTT
* * * * * *
23723502 TTTAATTTAAGAGTTTAATGCTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAG-GGTT-AGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * * * *
23723547 TTAAAGTTAAGAGTTAAGGTTTTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * *
23723590 TTAAAGTTAATGGTTAGGGTTTTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
* * * * *
23723633 TTAAAGTTAAAGGTTAAGGTTTTTAGGTTAAAGGG-ATAGAGG-T
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTT-AAGGGTTTA-AGGTT
*
23723676 TTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
23723719 T
1 T
23723720 GTCAATTAAA
Statistics
Matches: 688, Mismatches: 107, Indels: 50
0.81 0.13 0.06
Matches are distributed among these distances:
42 114 0.17
43 429 0.62
44 114 0.17
45 30 0.04
46 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
Found at i:23722955 original size:22 final size:22
Alignment explanation
Indices: 23722857--23723719 Score: 926
Period size: 22 Copynumber: 40.0 Consensus size: 22
23722847 TCAAATTATA
23722857 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23722878 TTTAAGTTAAGGATTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
23722900 TTAAAGCTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23722922 TTAAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23722944 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23722965 TTTATGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23722987 TTTAATTTAAGGG-GTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
23723008 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723030 TTAAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723052 TTAAAATTAA-GGTTTAAGGG-T
1 TTTAAGTTAAGGGTTT-AGGGTT
*
23723073 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723094 TTTAGGTTAAGGGATTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723116 TTTAATTTAAGGG-TTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
23723137 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723159 TTTAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723181 TTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723202 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723223 TTTATGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723245 TTTAATTTAAAGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723265 TTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723287 TTTAAGTCAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723309 TTAAAGTTAA-GGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723330 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723351 TTTTAGTTTAGGGTTTAGGGTTT
1 TTTAAGTTAAGGGTTTAGGG-TT
*
23723374 TTTAATTTAA-GG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723394 TTTAAGTTAATGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723416 TTTAAGTTAAGGGTCTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723438 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723459 TTCAAGTTAAGAG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723480 TTTAATTTAAGGGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
23723502 TTTAATTTAAGAGTTTAATGCTT
1 TTTAAGTTAAGGGTTT-AGGGTT
*
23723525 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
23723547 TTAAAGTTAAGAG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723568 TTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723590 TTAAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
23723611 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
23723633 TTAAAGTTAAAGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723654 TTTAGGTTAAAGGG-ATAGAGG-T
1 TTTAAGTT-AAGGGTTTAG-GGTT
23723676 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
23723697 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
23723719 T
1 T
23723720 GTCAATTAAA
Statistics
Matches: 706, Mismatches: 111, Indels: 49
0.82 0.13 0.06
Matches are distributed among these distances:
20 29 0.04
21 291 0.41
22 359 0.51
23 27 0.04
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:23724935 original size:7 final size:7
Alignment explanation
Indices: 23724923--23724955 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
23724913 TTATATAAAT
23724923 AATACTA
1 AATACTA
23724930 AATACTA
1 AATACTA
23724937 AATACTA
1 AATACTA
23724944 AATACTA
1 AATACTA
23724951 AATAC
1 AATAC
23724956 CAATCGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:23726173 original size:11 final size:11
Alignment explanation
Indices: 23726159--23726224 Score: 57
Period size: 11 Copynumber: 5.9 Consensus size: 11
23726149 ATAAATATGG
23726159 ATTTGAGAGAA
1 ATTTGAGAGAA
* *
23726170 ATTTTGA-TGTA
1 A-TTTGAGAGAA
23726181 ATTTGAGAGGAA
1 ATTTGAGA-GAA
23726193 ATTT-AGAAGAA
1 ATTTGAG-AGAA
23726204 A-TTGAGAGGAA
1 ATTTGAGA-GAA
23726215 ATTTGAGAGA
1 ATTTGAGAGA
23726225 GGATTAGTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
10 8 0.18
11 18 0.41
12 18 0.41
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:23726184 original size:22 final size:22
Alignment explanation
Indices: 23726159--23726218 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
23726149 ATAAATATGG
* *
23726159 ATTTGAGA-GAAATTTTGATGTA
1 ATTTGAGAGGAAATTTAGAAG-A
23726181 ATTTGAGAGGAAATTTAGAAGA
1 ATTTGAGAGGAAATTTAGAAGA
*
23726203 AATTGAGAGGAAATTT
1 ATTTGAGAGGAAATTT
23726219 GAGAGAGGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 24 0.71
23 10 0.29
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (22 bp):
ATTTGAGAGGAAATTTAGAAGA
Found at i:23734835 original size:26 final size:26
Alignment explanation
Indices: 23734799--23734849 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23734789 TCTTCTAATT
* * *
23734799 CTAACATCAAATTAAAAATATAAATC
1 CTAAAATCAAACTAAAAATAAAAATC
*
23734825 CTAAAATCAAACTAACAATAAAAAT
1 CTAAAATCAAACTAAAAATAAAAAT
23734850 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (26 bp):
CTAAAATCAAACTAAAAATAAAAATC
Found at i:23736377 original size:10 final size:10
Alignment explanation
Indices: 23736362--23736388 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
23736352 TAAATTATTA
23736362 AACCTAAATT
1 AACCTAAATT
23736372 AACCTAAATT
1 AACCTAAATT
23736382 AACCTAA
1 AACCTAA
23736389 TAGTCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (10 bp):
AACCTAAATT
Found at i:23737714 original size:15 final size:17
Alignment explanation
Indices: 23737675--23737707 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23737665 CTAACCCGAC
23737675 CCTCTTAAAACCCTAAA
1 CCTCTTAAAACCCTAAA
*
23737692 CCTCTTAAATCCCTAA
1 CCTCTTAAAACCCTAA
23737708 CTCTTAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.27
Consensus pattern (17 bp):
CCTCTTAAAACCCTAAA
Found at i:23738768 original size:114 final size:113
Alignment explanation
Indices: 23738568--23738808 Score: 317
Period size: 114 Copynumber: 2.1 Consensus size: 113
23738558 CGCTTTAACA
* * * * *
23738568 AAAACGCCGCTAAAACCTATATTATTCGCGGCGCTAATCTAAACGCCACTAAAGTCATTGAAGTG
1 AAAACGCCGCTAATACCTATATTATTAGCGGCGCTAATCAAAACGACACTAAAGTCACTGAAGTG
23738633 TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATA-
66 TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATAC
* * *
23738680 GAAACGCCGCTAATA-CTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAATGTCACCT-A
1 AAAACGCCGCTAATACCT-ATATTATTAGCGGCGCTAATC--AAAACGACACTAAAGTCA-CTGA
* * *
23738743 AGTGTCTCCAGACGACGTCGTCTGGGTTTTAGTTTTTGCGGCGTTTTTATAC
62 AGTGTCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATAC
*
23738795 AAAACGCCACTAAT
1 AAAACGCCGCTAAT
23738809 GTCACCGAAG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
111 2 0.02
112 32 0.29
114 64 0.58
115 13 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (113 bp):
AAAACGCCGCTAATACCTATATTATTAGCGGCGCTAATCAAAACGACACTAAAGTCACTGAAGTG
TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCATTTTTATAC
Found at i:23738843 original size:74 final size:74
Alignment explanation
Indices: 23738721--23738864 Score: 234
Period size: 74 Copynumber: 1.9 Consensus size: 74
23738711 CGCTATTCAA
* * * *
23738721 AAAACGACACTAATGTCACCTAAGTGTCTCCAGACGACGTCGTCTGGGTTTTAGTTTTTGCGGCG
1 AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCGGCG
23738786 TTTTTATAC
66 TTTTTATAC
* *
23738795 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCGGCG
1 AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCGGCG
23738860 TTTTT
66 TTTTT
23738865 GTGGAAATGC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (74 bp):
AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCGGCG
TTTTTATAC
Found at i:23738936 original size:188 final size:187
Alignment explanation
Indices: 23738608--23738995 Score: 573
Period size: 188 Copynumber: 2.1 Consensus size: 187
23738598 GCGCTAATCT
* ** * *
23738608 AAACGCCACTAAAGTCATTGAAGTGTCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGCGGCAT
1 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCGGCAT
*
23738673 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAATGTC
66 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAAAGTC
* * *
23738738 ACCTAAGTGTCTCCAGACGACGTCGTCT-GGGTTTTAGTTTTTGCGGCGTTTTTATACA
131 ACCGAAGTGTCTCCAAACGACGTCGTCTAGGG-TTTAGTTTTTGCGGCATTTTTATA-A
* * *
23738796 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCGGCGT
1 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCGGCAT
* * * *
23738861 TTTTGTGGAAATGCCGCTAATACTCATATTATTAGCGGCGCTATT-AGAAAAACGCCACTAAAGT
66 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCA-AAAAACGACACTAAAGT
*
23738925 CACCGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAG
130 CACCGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAA
*
23738983 AAACGCCGCTAAT
1 AAACGCCACTAAT
23738996 ACTCATATTA
Statistics
Matches: 180, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
187 13 0.07
188 164 0.91
189 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (187 bp):
AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCGGCAT
TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAAAGTC
ACCGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAA
Found at i:23738995 original size:114 final size:114
Alignment explanation
Indices: 23738795--23739227 Score: 692
Period size: 114 Copynumber: 3.8 Consensus size: 114
23738785 GTTTTTATAC
* * * *
23738795 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCGGCG
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCA
* * *
23738860 TTTTTGTGGAAATGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
66 TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
*
23738909 AAAACGCCACTAAAGTCACCGAAGTGTCTCCAAACGACGTCGTCTAGGG-TTTAGTTTTTGCGGC
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCT-GGGTTTTAGTTTTTGCGGC
*
23738973 ATTTTTATAGAAACGCCGCTAATACTCATATTATTAGCAGCGCTATTCA-A
65 ATTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATT-AGA
* *
23739023 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACAACGTCGTCTGGGTTTTAGTTTTTGCAGCA
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCA
* *
23739088 TTTTTACAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCGA
66 TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
* *
23739137 AAAACGCCACTAATGTCACCGAAGTTTCTCCAAACGACGTCGTCTGGG-TTTAGTTTTTGCGGCG
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCA
23739201 TTTTTATAGAAACGCCGCTAATACTCA
66 TTTTTATAGAAACGCCGCTAATACTCA
23739228 ATCGGTTGCG
Statistics
Matches: 295, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
113 43 0.15
114 248 0.84
115 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (114 bp):
AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCGGCA
TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
Found at i:23739548 original size:22 final size:22
Alignment explanation
Indices: 23739521--23739565 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
23739511 AAAACAAGCT
23739521 TTTAGCGGCGCTTTTTAAGGCC
1 TTTAGCGGCGCTTTTTAAGGCC
*
23739543 TTTAGCGGCGCTTTTTAATGCC
1 TTTAGCGGCGCTTTTTAAGGCC
23739565 T
1 T
23739566 CTAAAAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.13, C:0.22, G:0.24, T:0.40
Consensus pattern (22 bp):
TTTAGCGGCGCTTTTTAAGGCC
Found at i:23739717 original size:43 final size:42
Alignment explanation
Indices: 23739630--23739772 Score: 180
Period size: 43 Copynumber: 3.4 Consensus size: 42
23739620 TCGTCGCTAA
* * *
23739630 CTTTAGCGGCGCTTTTCCC-CCAACGCCGCTAAAGACAATAAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACAA-GAC
23739672 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAA-CAAGAC
* * *
23739715 CTTTAGCGGCGCTTTTTCCTGAAGCGCCGCTAAAAAACAAGAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCT-AAAAACAAGAC
* *
23739758 CTTTAGTGACGCTTT
1 CTTTAGCGGCGCTTT
23739773 CTCTAAAAAC
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
42 19 0.21
43 63 0.70
44 8 0.09
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.24
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACAAGAC
Found at i:23739783 original size:86 final size:85
Alignment explanation
Indices: 23739630--23739791 Score: 193
Period size: 86 Copynumber: 1.9 Consensus size: 85
23739620 TCGTCGCTAA
* * *
23739630 CTTTAGCGGCGCTTTTCCCCCAACGCCGCTAAAGACAATAACCTTTAGCGGCGCTTTTCCCTCAA
1 CTTTAGCGGCGCTTTTCCCCCAACGCCGCTAAAAACAATAACCTTTAGCGACGCTTTTCCCTAAA
*
23739695 ACGCCGCTAAAAACCAAGAC
66 ACGCCACTAAAAACCAAGAC
* ** * * *
23739715 CTTTAGCGGCGCTTTTTCCTGAAGCGCCGCTAAAAAACAA-GACCTTTAGTGACGC-TTTCTCTA
1 CTTTAGCGGCGCTTTTCCCCCAA-CGCCGCT-AAAAACAATAACCTTTAGCGACGCTTTTCCCT-
23739778 AAAACGCCACTAAA
63 AAAACGCCACTAAA
23739792 GGTCACGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
85 26 0.41
86 31 0.48
87 7 0.11
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (85 bp):
CTTTAGCGGCGCTTTTCCCCCAACGCCGCTAAAAACAATAACCTTTAGCGACGCTTTTCCCTAAA
ACGCCACTAAAAACCAAGAC
Found at i:23739791 original size:43 final size:43
Alignment explanation
Indices: 23739651--23739791 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
23739641 CTTTTCCCCC
* * * *
23739651 AACGCCGCT-AAAGACAATAACCTTTAGCGGCGCTTT-TCCCTCA
1 AACGCCGCTAAAAAACAA-GACCTTTAGCGACGCTTTCT-CCTAA
* * * *
23739694 AACGCCGCTAAAAACCAAGACCTTTAGCGGCGCTTTTTCCTGA
1 AACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTCTCCTAA
* *
23739737 AGCGCCGCTAAAAAACAAGACCTTTAGTGACGCTTTCT-CTAAA
1 AACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTCTCCT-AA
*
23739780 AACGCCACTAAA
1 AACGCCGCTAAA
23739792 GGTCACGAAA
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.02
43 74 0.89
44 7 0.08
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
AACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTCTCCTAA
Found at i:23740716 original size:23 final size:23
Alignment explanation
Indices: 23740682--23740961 Score: 154
Period size: 23 Copynumber: 12.3 Consensus size: 23
23740672 AATGGAAAGT
*
23740682 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* *
23740705 AGCGA-TAAAACA-TCTCAATTTGC
1 AGC-ACTTAAACACT-TCAATTTAC
*
23740728 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
23740751 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
* *
23740774 AGCACTTAAACA-TATCAATTAAT
1 AGCACTTAAACACT-TCAATTTAC
* * * *
23740797 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
23740819 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
23740842 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
23740865 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
23740888 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
23740910 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
23740933 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
23740956 AGCACT
1 AGCACT
23740962 ATCAAATCTC
Statistics
Matches: 196, Mismatches: 40, Indels: 42
0.71 0.14 0.15
Matches are distributed among these distances:
22 36 0.18
23 156 0.80
24 4 0.02
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:23740838 original size:45 final size:45
Alignment explanation
Indices: 23740781--23740929 Score: 156
Period size: 45 Copynumber: 3.3 Consensus size: 45
23740771 TGCAGCACTT
*
23740781 AAACATATCAATTAATAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
* ** * ** * * * * *
23740826 AAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGC-ACTT
1 AAACATATCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TA
23740872 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
*
23740917 AAACATCTCAATT
1 AAACATATCAATT
23740930 TCCAGCAACT
Statistics
Matches: 77, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
45 44 0.57
46 33 0.43
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.29
Consensus pattern (45 bp):
AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
Found at i:23740857 original size:91 final size:91
Alignment explanation
Indices: 23740742--23740961 Score: 397
Period size: 91 Copynumber: 2.4 Consensus size: 91
23740732 ACTAAACACT
* * *
23740742 TCAATTTGCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAATAACATTTAT
1 TCAATTTCCAGCAAC-TAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAT
23740806 ACACCTCAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
23740833 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
23740898 CACCTCAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
23740924 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
23740962 ATCAAATCTC
Statistics
Matches: 125, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
91 123 0.98
92 2 0.02
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATC
Found at i:23740906 original size:114 final size:114
Alignment explanation
Indices: 23740687--23740908 Score: 322
Period size: 114 Copynumber: 1.9 Consensus size: 114
23740677 AAAGTAGCAC
* *
23740687 TTTAACACTTCAATTTACAGCGATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCA
1 TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
** * *
23740752 GCACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAATAACA
66 GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAATAACA
*
23740801 TTTATACACCTCAA-TTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGC
1 TTTA-ACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
* * *
23740865 AGCACTTAAACA-TATCAATTAACAACATTTATACACCTCAATTA
65 AGCACTTAAACACT-TCAATTAACAACACTTAAACACATCAATTA
23740909 CAGCGATAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
113 1 0.01
114 87 0.91
115 8 0.08
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (114 bp):
TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAATAACA
Found at i:23740951 original size:114 final size:114
Alignment explanation
Indices: 23740690--23740959 Score: 289
Period size: 114 Copynumber: 2.4 Consensus size: 114
23740680 GTAGCACTTT
* *
23740690 AACACTTCAATTTACAGCGATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCAGCA
1 AACACCTCAA-TTACAGCAATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCAGCA
** * * * *
23740755 CTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAATAACATTTA
65 CTTAAACACTTCAATTAACAACACTTAAACACATCAATTAACAACATTAA
* * * *
23740805 TACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCAC
1 AACACCTCAATTACAGCAATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCAGCAC
* * * *
23740870 TTAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGCGA-TAA
66 TTAAACACT-TCAATTAACAACACTTAAACACATCAATTAACAAC-ATTAA
* *
23740918 AACATCTCAATTTCCAGCAACTAAATAC-T-TCAATTTGCAGCA
1 AACACCTCAA-TTACAGCAA-TAAA-ACATCTCAATTTGCAGCA
23740960 CTATCAAATC
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
113 14 0.11
114 102 0.78
115 13 0.10
116 2 0.02
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.29
Consensus pattern (114 bp):
AACACCTCAATTACAGCAATAAAACATCTCAATTTGCAGCAACTAAACACTTCAATTTGCAGCAC
TTAAACACTTCAATTAACAACACTTAAACACATCAATTAACAACATTAA
Found at i:23743596 original size:138 final size:142
Alignment explanation
Indices: 23743340--23743725 Score: 438
Period size: 138 Copynumber: 2.7 Consensus size: 142
23743330 TTATTTATAT
* * * * * * * *
23743340 AAAAACGCCGTAAATTTTTTTTATTTTGAACAAAACGATGTCGTTTTACTATTTTAAAAATTTTT
1 AAAAACGCCGCAAATATTTTTCATTTTGAACAAAACCACGCCGTTTTGCTATTCT-AAAA--TTT
* ** * * *
23743405 TATTTTTTTATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACCGCTGTTGTTTACCT
63 T-TTTATAAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACCGCTATTGCTTACCT
23743470 TCAGCGGCGCTTCTTA
127 TCAGCGGCGCTTCTTA
* * *
23743486 AAAAACGCCGTAAA-ATTTTTCATTTTGAACGAAACGACGCCGTTTTGCTATTCT-AAA-TTTTT
1 AAAAACGCCGCAAATATTTTTCATTTTGAACAAAACCACGCCGTTTTGCTATTCTAAAATTTTTT
* * * *
23743548 TA-AAAAAAATTGATTTATTCTTTGCGGCGTTTTTCTGGAAAACGCCGCTATTGCTTACCTTTAG
66 TATAAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACCGCTATTGCTTACCTTCAG
23743612 CGGCGCTTCTTA
131 CGGCGCTTCTTA
* * *
23743624 TAAAACGCCGCAAATTTTTTTCATTTTGAACAAAACCTCGCCGTTTTGCTATTCTAAAATTTTTT
1 AAAAACGCCGCAAATATTTTTCATTTTGAACAAAACCACGCCGTTTTGCTATTCTAAAATTTTTT
* *
23743689 TATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTT
66 TA----TAAAAAAATTGATTTATTCTTTGCGGCGTTT
23743726 ACCTTTAGCG
Statistics
Matches: 207, Mismatches: 25, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
138 77 0.37
139 39 0.19
140 6 0.03
141 7 0.03
143 3 0.01
145 33 0.16
146 42 0.20
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.43
Consensus pattern (142 bp):
AAAAACGCCGCAAATATTTTTCATTTTGAACAAAACCACGCCGTTTTGCTATTCTAAAATTTTTT
TATAAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACCGCTATTGCTTACCTTCAG
CGGCGCTTCTTA
Found at i:23743747 original size:122 final size:123
Alignment explanation
Indices: 23743602--23743981 Score: 600
Period size: 133 Copynumber: 3.0 Consensus size: 123
23743592 CCGCTATTGC
* **
23743602 TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAATTTTTTTCATTTTGAACAAAACCTCGCCG
1 TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
23743667 TTTTGCTATTCTAAAATTTTTTTA-TTTTTTAATAAATTGATTTATTCTTTGCGGCGT
66 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
*
23743724 TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
1 TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
* *
23743789 TTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTTATTTATTCTTTGCGGCGTTTTCTAT
66 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCG--------
23743854 T
123 T
*
23743855 GCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAACGACGC
1 --TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGC
23743920 CGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
64 CGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
23743980 TT
1 TT
23743982 TTATAGAAAA
Statistics
Matches: 237, Mismatches: 10, Indels: 21
0.88 0.04 0.08
Matches are distributed among these distances:
122 84 0.35
123 33 0.14
125 1 0.00
131 1 0.00
133 118 0.50
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (123 bp):
TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
Found at i:23743876 original size:133 final size:133
Alignment explanation
Indices: 23743724--23744132 Score: 631
Period size: 133 Copynumber: 3.0 Consensus size: 133
23743714 TTTGCGGCGT
23743724 TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
1 TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
* *
23743789 TTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTTATTTATTCTTTGCGGCGTTTTCTAT
66 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAT
23743854 TGC
131 TGC
* *
23743857 TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAACGACGCCG
1 TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
23743922 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATA
66 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCG--TTT-T-
23743987 GAAAACGCCGCTATTGC
127 ----------CTATTGC
*
23744004 TTACTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCA-TTTGAACAAAACGACGCCG
1 TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
*
23744068 TTTTGCTGTTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAT
66 TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAT
23744133 AAAAACGCCG
Statistics
Matches: 254, Mismatches: 8, Indels: 29
0.87 0.03 0.10
Matches are distributed among these distances:
132 4 0.02
133 118 0.46
135 3 0.01
136 1 0.00
143 1 0.00
144 3 0.01
146 75 0.30
147 49 0.19
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.45
Consensus pattern (133 bp):
TTACCTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCG
TTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAT
TGC
Found at i:23743923 original size:255 final size:261
Alignment explanation
Indices: 23743595--23744132 Score: 793
Period size: 255 Copynumber: 2.0 Consensus size: 261
23743585 GAAAACGCCG
* *
23743595 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAATTTTTTTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
*
23743660 CTCGCCGTTTTGCTATTCTAAAATTTTTTTA-TTTTTTAATAAATTGATTTATTCTTTGCGGCG-
66 CACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
23743723 TT-T-A-C-C-TTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACG
131 TTATAACCTCTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCA-TTTGAACAAAACG
* *
23743783 ACGCCGTTTTGCTATTCTAAATTTTTTTTATTTTTTTAATAAATTTATTTATTCTTTGCGGCGTT
195 ACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTT
23743848 TT
260 TT
23743850 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
*
23743915 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
66 CACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCG-
23743980 TTTTATAGAAAACGCCGCTATTGCTTACTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTT
130 -TTTAT----AA-----C-----C-T-CTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTT
*
23744045 TTCATTTGAACAAAACGACGCCGTTTTGCTGTTCTAAAATTTTTTTATTTTTTTAATAAATTGAT
178 TTCATTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGAT
23744110 TTATTCTTTGCGGCGTTTT
243 TTATTCTTTGCGGCGTTTT
23744129 CTAT
1 CTAT
23744133 AAAAACGCCG
Statistics
Matches: 251, Mismatches: 7, Indels: 26
0.88 0.02 0.09
Matches are distributed among these distances:
255 92 0.37
256 32 0.13
259 2 0.01
260 1 0.00
265 1 0.00
276 1 0.00
279 82 0.33
280 40 0.16
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.45
Consensus pattern (261 bp):
CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
CACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
TTATAACCTCTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTGAACAAAACGA
CGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTT
T
Found at i:23744099 original size:402 final size:395
Alignment explanation
Indices: 23743341--23744127 Score: 1114
Period size: 402 Copynumber: 1.9 Consensus size: 395
23743331 TATTTATATA
* * * * * *
23743341 AAAACGCCGTAAATTTTTTTTATTTTGAACAAAACGATGTCGTTTTACTATTTTAAAAATTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTACTATTCTAAAAATTTTTT
* *
23743406 ATTTTTTTATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACACCGCTGTTGTTTACCTT
66 ATTTTTTTATAAATTGATTTATTCTTTGCGGCG-TTTTAT-------A---CTATTGCTTACCTT
* *
23743471 CAGCGGCGCTTCTTAAAAAACGCCGTAAAATTTTTCATTTTGAACGAAACGACGCCGTTTTGCTA
120 CAGCGGCGCTTCTTAAAAAACGCCGCAAAATTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
* *
23743536 TTCTAAATTTTTTAAAAAAAATTGATTTATTCTTTGCGGCGTTTTTCTGGAAAACGCCGCTATTG
185 TTCTAAATTTTTTAAAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTG
* *
23743601 CTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAATTTTTTTCATTTTGAACAAAACCTCGCC
250 CTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACCACGCC
23743666 GTTTTGCTATTCTAAAATTTTTTTATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTACCTT
315 GTTTTGCTATTCTAAAATTTTTTTATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTACCTT
23743731 TAGCGGTGCTTCTTAT
380 TAGCGGTGCTTCTTAT
* **
23743747 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTACTATTCTAAAAATTTTTT
* *
23743812 ATTTTTTTAATAAATTTATTTATTCTTTGCGGCG-TTT-T-CTATTGCTTACCTTTAGCGGCGCT
66 ATTTTTTT-ATAAATTGATTTATTCTTTGCGGCGTTTTATACTATTGCTTACCTTCAGCGGCGCT
*
23743874 TCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAT
130 TCTTAAAAAACGCCGCAAAATTTT-TCATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AAA-
* *
23743939 TTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGC
192 TTTTTTA------AAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGC
* * *
23744004 TTACTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCA-TTTGAACAAAACGACGCCG
251 TTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACCACGCCG
*
23744068 TTTTGCTGTTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTT
316 TTTTGCTATTCTAAAATTTTTTTA-TTTTTTAATAAATTGATTTATTCTTTGCGGCGTTT
23744128 TCTATAAAAA
Statistics
Matches: 344, Mismatches: 26, Indels: 26
0.87 0.07 0.07
Matches are distributed among these distances:
393 43 0.12
394 34 0.10
395 3 0.01
396 7 0.02
401 40 0.12
402 125 0.36
404 1 0.00
405 3 0.01
406 64 0.19
407 24 0.07
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (395 bp):
AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTACTATTCTAAAAATTTTTT
ATTTTTTTATAAATTGATTTATTCTTTGCGGCGTTTTATACTATTGCTTACCTTCAGCGGCGCTT
CTTAAAAAACGCCGCAAAATTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTT
TTAAAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACCTTTAG
CGGCGCTTCTTATAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACCACGCCGTTTTGCTATT
CTAAAATTTTTTTATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTACCTTTAGCGGTGCTT
CTTAT
Found at i:23744115 original size:146 final size:147
Alignment explanation
Indices: 23743850--23744147 Score: 537
Period size: 146 Copynumber: 2.0 Consensus size: 147
23743840 GCGGCGTTTT
23743850 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
23743915 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
66 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
23743980 TTT-TATAGAAAACGCCG
131 TTTCTATA-AAAACGCCG
* * *
23743997 CTATTGCTTACTTTTAGCGGTGCTTCTTATAAAACGCCGCAAAATTTTTTCA-TTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
*
23744061 GACGCCGTTTTGCTGTTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
66 GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
23744126 TTTCTATAAAAACGCCG
131 TTTCTATAAAAACGCCG
23744143 CTATT
1 CTATT
23744148 TCATTTTGAA
Statistics
Matches: 146, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
146 93 0.64
147 53 0.36
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (147 bp):
CTATTGCTTACCTTTAGCGGCGCTTCTTATAAAACGCCGCAAAATTTTATCATTTTGAACAAAAC
GACGCCGTTTTGCTATTCTAAAATTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGT
TTTCTATAAAAACGCCG
Found at i:23744538 original size:15 final size:14
Alignment explanation
Indices: 23744521--23744591 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 14
23744511 ACCCCTGAAT
*
23744521 CCCTAAACCTTAAAT
1 CCCTAAACCTT-AAC
23744536 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
23744550 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
23744564 CCCTAAACCTCTAAC
1 CCCTAAACCT-TAAC
*
23744579 CCCAAAACCTTAA
1 CCCTAAACCTTAA
23744592 ATCCCAACCC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
13 1 0.02
14 23 0.47
15 25 0.51
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:23744555 original size:14 final size:14
Alignment explanation
Indices: 23744536--23744581 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
23744526 AACCTTAAAT
23744536 CCCTAAC-TCTTAAC
1 CCCTAACATC-TAAC
23744550 CCCTAACATCTAAC
1 CCCTAACATCTAAC
*
23744564 CCCTAAACCTCTAAC
1 CCCT-AACATCTAAC
23744579 CCC
1 CCC
23744582 AAAACCTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 15 0.52
15 14 0.48
ACGTcount: A:0.30, C:0.48, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAACATCTAAC
Found at i:23744617 original size:15 final size:14
Alignment explanation
Indices: 23744603--23744651 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
23744593 TCCCAACCCT
23744603 TAAACCATAATCCC
1 TAAACCATAATCCC
**
23744617 TAATTCATAATCCC
1 TAAACCATAATCCC
*
23744631 TAAATCCATACTCCC
1 TAAA-CCATAATCCC
23744646 TAAACC
1 TAAACC
23744652 TTAAATATGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.39, C:0.35, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:23744912 original size:15 final size:15
Alignment explanation
Indices: 23744888--23744918 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23744878 AACCCCTAAT
23744888 CCATAATCCCTAAAC
1 CCATAATCCCTAAAC
*
23744903 CCATACTCCCTAAAC
1 CCATAATCCCTAAAC
23744918 C
1 C
23744919 TTAAAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.19
Consensus pattern (15 bp):
CCATAATCCCTAAAC
Found at i:23745012 original size:268 final size:267
Alignment explanation
Indices: 23744600--23745286 Score: 1189
Period size: 268 Copynumber: 2.6 Consensus size: 267
23744590 AAATCCCAAC
* * *
23744600 CCTTAAA-CCATAATCCCTAATTCATAATCCCTAAATCCATACTCCCTAAACCTT-AAATATGAA
1 CCTTAAATCC-TAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAA
23744663 CTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTT
65 CTCCTAAA-CGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTT
23744728 ATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCT
129 ATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCT
*
23744793 AAATCCAAAACCCTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACACCGAACCCTCTA
194 AAACCCAAAACCCTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACACCGAACCCTCTA
23744858 ACCCCTAAA
259 ACCCCTAAA
*
23744867 TCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAAC
1 CCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAAC
23744932 TCCTAAATCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTA
66 TCCTAAA-CGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTA
23744997 TTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTA
130 TTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTA
* * * * *
23745062 AGCCCAAAACCTTAACTCGACCCCTGAATCCCTAACTTTTAATCCCTAAACCCCTAACCCTCTAA
195 AACCCAAAACCCTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACACCGAACCCTCTAA
23745127 CCCCTAAA
260 CCCCTAAA
23745135 CCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAAC
1 CCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAAC
* * * *
23745200 TCTTAAACTGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACAAATTTA
66 TCCTAAAC-GGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTA
*
23745265 TTATTATCTCATTTACAATTAT
130 TTATTATCTCTTTTACAATTAT
23745287 TTTAAATAAT
Statistics
Matches: 400, Mismatches: 17, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
267 48 0.12
268 352 0.88
ACGTcount: A:0.41, C:0.26, G:0.02, T:0.30
Consensus pattern (267 bp):
CCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCATACTCCCTAAACCTTAAAATATGAAC
TCCTAAACGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACAAATTTAT
TATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTAATCTAA
ACCCAAAACCCTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACACCGAACCCTCTAAC
CCCTAAA
Found at i:23745180 original size:15 final size:15
Alignment explanation
Indices: 23745101--23745186 Score: 61
Period size: 15 Copynumber: 5.9 Consensus size: 15
23745091 CCCTAACTTT
*
23745101 TAATCCCTAAACCCC
1 TAATCCCTAAACCCA
* *
23745116 TAA-CCCTCTAACCCC
1 TAATCCCT-AAACCCA
* * *
23745131 TAAACCTTAAATCC-
1 TAATCCCTAAACCCA
* *
23745145 TAACCCCT-AATCCA
1 TAATCCCTAAACCCA
23745159 TAATCCCTAAACCCA
1 TAATCCCTAAACCCA
*
23745174 TACTCCCTAAACC
1 TAATCCCTAAACC
23745187 TTAAAATATG
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
13 5 0.09
14 17 0.29
15 33 0.57
16 3 0.05
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (15 bp):
TAATCCCTAAACCCA
Found at i:23745655 original size:113 final size:112
Alignment explanation
Indices: 23745431--23745688 Score: 378
Period size: 113 Copynumber: 2.3 Consensus size: 112
23745421 AGATAAAATA
* * *
23745431 TTTTTAGCGGCGCTTTTCCAAAAACGCTGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAA
1 TTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTTCTTAAAAA
* * *
23745496 CGCCGCTAAATCCCTAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG
66 CGCCGCTAAATCCCGAAAGCTCAGAAAACGACGTCGTTGAGCTTAGG
* *
23745543 TTTTTTTGCGGCGCTTTTGCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTTCTTAGAA
1 -TTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTTCTTAAAA
23745608 ACGCCGCTAAATCCCCGAAAGCTC-GAGAAACGACGTCGTTGAG-TTAGG
65 ACGCCGCTAAAT-CCCGAAAGCTCAGA-AAACGACGTCGTTGAGCTTAGG
*
23745656 TTTTTTGTGGCG-TTTTCTCAAAAACGCCGCTAA
1 TTTTTTGCGGCGCTTTTC-CAAAAACGCCGCTAA
23745689 TGCTTATTTT
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
111 4 0.03
112 26 0.20
113 78 0.59
114 24 0.18
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (112 bp):
TTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCGGAGCATTAGCGGCGCTTTCTTAAAAA
CGCCGCTAAATCCCGAAAGCTCAGAAAACGACGTCGTTGAGCTTAGG
Found at i:23745780 original size:12 final size:12
Alignment explanation
Indices: 23745763--23745788 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23745753 TTTTTTATCC
23745763 AAACGCCGCTAA
1 AAACGCCGCTAA
23745775 AAACGCCGCTAA
1 AAACGCCGCTAA
23745787 AA
1 AA
23745789 TCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:23755356 original size:6 final size:6
Alignment explanation
Indices: 23755345--23755369 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23755335 GTTAGATGGT
23755345 TTAGGG TTAGGG TTAGGG TTAGGG T
1 TTAGGG TTAGGG TTAGGG TTAGGG T
23755370 ACATATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (6 bp):
TTAGGG
Found at i:23757563 original size:57 final size:57
Alignment explanation
Indices: 23757494--23757614 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 57
23757484 CATTTTTAAG
*
23757494 TCATTTTCATTTTGGA-GAAAGCCACATTC-TTTTCCAAATTATTCTATTTCTCCATTT
1 TCATTTTCATTTTGGAGGAAA-CCACAATCATTTT-CAAATTATTCTATTTCTCCATTT
* * * * *
23757551 TCATTTTTATTTTGGAGGAAACCATAATCATTTTCAAATTTTTCTGTTTCTCTATTT
1 TCATTTTCATTTTGGAGGAAACCACAATCATTTTCAAATTATTCTATTTCTCCATTT
23757608 TCATTTT
1 TCATTTT
23757615 GGAGAAAACC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 48 0.86
58 8 0.14
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.51
Consensus pattern (57 bp):
TCATTTTCATTTTGGAGGAAACCACAATCATTTTCAAATTATTCTATTTCTCCATTT
Found at i:23766880 original size:25 final size:25
Alignment explanation
Indices: 23766839--23766913 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
23766829 TTCTCACCCT
23766839 AATTTTACCCTAGTAAAATTTTGAA
1 AATTTTACCCTAGTAAAATTTTGAA
* *
23766864 AATTTTA-CCTCGTTAAAATTTTGAT
1 AATTTTACCCTAG-TAAAATTTTGAA
** *
23766889 GGTTTTACCCCTAATAAAATTTTGA
1 AATTTTA-CCCTAGTAAAATTTTGA
23766914 GAAAATTCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
24 4 0.10
25 23 0.56
26 11 0.27
27 3 0.07
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (25 bp):
AATTTTACCCTAGTAAAATTTTGAA
Found at i:23781628 original size:36 final size:36
Alignment explanation
Indices: 23781569--23781645 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
23781559 ATTCCAACTA
* *
23781569 AAACACACCAGATGCTCATAAGAGCTAATCAATCTG
1 AAACACACCAGATGCTCAGAAGAGCTAATCAATCCG
* *
23781605 AAACACACCA-ATGGCTCCGAAGAGCTAATCGATCCG
1 AAACACACCAGAT-GCTCAGAAGAGCTAATCAATCCG
23781641 AAACA
1 AAACA
23781646 TATATATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 2 0.06
36 34 0.94
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.16
Consensus pattern (36 bp):
AAACACACCAGATGCTCAGAAGAGCTAATCAATCCG
Found at i:23787595 original size:53 final size:53
Alignment explanation
Indices: 23787523--23787625 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
23787513 AAAAATATCA
23787523 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
1 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
* ** *
23787576 TTTTATGTTGAATGGGGGGATTGTCTTGGGGTATTAAATATCTAAAAAAG
1 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAG
23787626 GGTTGAAGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (53 bp):
TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
Found at i:23793591 original size:15 final size:16
Alignment explanation
Indices: 23793561--23793594 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
23793551 AAAATGTAAT
23793561 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
23793577 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
23793592 TTT
1 TTT
23793595 TTAAAGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:23796094 original size:4 final size:4
Alignment explanation
Indices: 23796085--23796149 Score: 53
Period size: 4 Copynumber: 16.0 Consensus size: 4
23796075 ATATTTGTTT
* * *
23796085 TAAA TAAA TAAA TAAA TAAA TAAA AACAA AAAA TATATA TAAA TAAA -AAC
1 TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TA-A-A TAAA TAAA TAAA
*
23796135 TAAT TAAA -AAA TAAA
1 TAAA TAAA TAAA TAAA
23796150 AGAAATAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
3 5 0.10
4 37 0.73
5 6 0.12
6 3 0.06
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:23796132 original size:17 final size:17
Alignment explanation
Indices: 23796088--23796133 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
23796078 TTTGTTTTAA
23796088 ATAAATAAATAAATAAAT
1 ATAAATAAA-AAATAAAT
* * *
23796106 AAAAACAAAAAATATAT
1 ATAAATAAAAAATAAAT
23796123 ATAAATAAAAA
1 ATAAATAAAAA
23796134 CTAATTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (17 bp):
ATAAATAAAAAATAAAT
Found at i:23796543 original size:19 final size:21
Alignment explanation
Indices: 23796505--23796543 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23796495 CCTTTTTTAA
*
23796505 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
23796526 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
23796544 AGAAAACAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:23796751 original size:22 final size:21
Alignment explanation
Indices: 23796716--23796773 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
23796706 AAAGGGTATC
* * *
23796716 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCCAAGAT
23796737 TACAAAATCATATCTTCCAAGAT
1 TAC-AAATCATATC-TCCAAGAT
*
23796760 TACATATCATATCT
1 TACAAATCATATCT
23796774 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.55
23 10 0.32
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCCAAGAT
Found at i:23796767 original size:17 final size:17
Alignment explanation
Indices: 23796745--23796797 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
23796735 ATTACAAAAT
23796745 CATATCTTCCAAGATTA
1 CATATCTTCCAAGATTA
* *
23796762 CATATCATATCTAAGATTG
1 CATATC-T-TCCAAGATTA
* *
23796781 CATATCCTCGAAGATTA
1 CATATCTTCCAAGATTA
23796798 TGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 14 0.48
18 1 0.03
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Found at i:23796779 original size:19 final size:19
Alignment explanation
Indices: 23796729--23796786 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 19
23796719 AAATTAAATC
*
23796729 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
23796749 TCTTCCAAGATTACATATCATA
1 TC-T--AAGATTACATATCATA
*
23796771 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
23796787 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
21 2 0.06
22 9 0.27
23 8 0.24
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:23797424 original size:44 final size:44
Alignment explanation
Indices: 23797096--23798201 Score: 456
Period size: 44 Copynumber: 25.6 Consensus size: 44
23797086 CTCTAATCCA
* * * * * * *
23797096 CTCCACTACAACTT-AGGGAGACAGGATTTGTTTATTTAGTATG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* * * * * *
23797139 CCCCACTGCAATTTCAATGG-GATAAGGCTTGCTTTCTTGAGTCTG
1 CTCCACTGCAACTTC-AGGGAGATAAGACTTGATTACTT-AGTCTG
* * * *
23797184 CTCCACTGCAACTTCAGGGAGATAAGACTCGA-T-GTGA-TCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* * * * *
23797225 CTCTACTGCAACTTCA--GAGAGAAGATCTGTGGTT--TTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTACTTAGTCTG
* * * * * *
23797267 CTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* * * *
23797311 CCCCACTGCAACTTCAGAGAGATAAGA-TTCG-TCATCTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTT-GATTA-CTT-AGTCTG
* *
23797356 CCCCACTGCAACTTCA-GGAGGATAAAACTTGATTACTTAGTCTG
1 CTCCACTGCAACTTCAGGGA-GATAAGACTTGATTACTTAGTCTG
* * * *
23797400 CTCCACTGCAACTTCAGGGAGATAAGACTAGA-TGC-GA-TTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
** * * * * **
23797441 CT-CTTTGCAACTTCAGAGAGATAAGATCTAAGGTT--TTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTACTTAGTCTG
* * * ** **
23797484 CTTCACTGCAACTTCAGGAAGATATGA-TT-ATCGGCTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT-TAC-TTAGTCTG
* * *
23797528 CCCCACTGCAACTTCA-GGAGGATAAGACTTGA-TGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGA-GATAAGACTTGATTACTTAGTCTG
* ** ** * * **
23797569 CT-CTCTGCAACTTCAAAGAGATAAGATCCAAGGTT--TTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGA--CTTGATTACTTAGTCTG
* * * **
23797612 CTCCACTGCAACTTCAGGAAGATAGGA-TT-ATTGGCTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATT-AC-TTAGTCTG
* *
23797656 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TCATCTTCAGTCT-
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTA-CTT-AGTCTG
* * * *
23797700 CCCTCACTACAACTTCA-GGAGGATAAGACTTGCTTGCTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTACTTAGTCTG
* * * *
23797745 CTCCATTGCAACTTCAGGGAGATAAGACTAGA-TGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* * * * *
23797786 CT-CTCTGCAACTTCAGAGAGATAAGATCTGTAATT--TTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTACTTAGTCTG
* * * *
23797829 CTCCACTGCAACTTCAGGGAGATAGGA-TTG-TCGACTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT-TAC-TTAGTCTG
* * *
23797873 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCA-T-CTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG--ATTACTT-AGTCTG
*
23797918 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTACTTAGTCTG
* * * *
23797962 CTCCACTACAACTTCAGGGAGATAAGACTAGA-TGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* * * * * *
23798003 CT-CTCTGCAACTTCAGAGAGATAGGA-TTG-TCGACTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGAT-TAC-TTAGTCTG
* * *
23798046 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCA-T-CTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTG--ATTACTT-AGTCTG
*
23798091 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTACTTAGTCTG
* * * *
23798135 CTCCACTACAACTTCAGGGAGATAAGACTAGA-TGC-GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
* *
23798176 CT-CTCTGCAACTTCAGAGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
23798202 TCCAAAATTT
Statistics
Matches: 803, Mismatches: 170, Indels: 183
0.69 0.15 0.16
Matches are distributed among these distances:
39 10 0.01
40 109 0.14
41 55 0.07
42 39 0.05
43 48 0.06
44 355 0.44
45 181 0.23
46 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGATTACTTAGTCTG
Found at i:23797532 original size:217 final size:216
Alignment explanation
Indices: 23797137--23797554 Score: 531
Period size: 217 Copynumber: 1.9 Consensus size: 216
23797127 TTATTTAGTA
* * ** * *
23797137 TGCCCCACTGCAATTTCAATGGGATAAGGCTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGG
1 TGCCCCACTGCAACTTCAAGGGGATAAAACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGG
* * ** *
23797202 GAGATAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGAAGATCTGTGGTTTTAATCCG
66 GAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGATCTAAGGTTTTAATCCA
* * **
23797267 CTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATGCCCCACTGCAACTTCA-GAGA
131 CTCCACTGCAACTTCAGGAAGACAGGATTTG-TGATTTAACATGCCCCACTGCAACTTCAGGAG-
23797331 GATAAGATTCGTCATCTTCAGTT
194 GATAAGATTCGTCATCTTCAGTT
23797354 TGCCCCACTGCAACTTC-AGGAGGATAAAACTTGATTACTT-AGTCTGCTCCACTGCAACTTCAG
1 TGCCCCACTGCAACTTCAAGG-GGATAAAACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAG
* * *
23797417 GGAGATAAGACTAGATGCGATTTGCTCT-TTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAAT
65 GGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAG--AAGATCTAAGGTTTTAAT
* * * * *
23797481 CCACTTCACTGCAACTTCAGGAAGATATGATTATCG-GCTTTAACCTGCCCCACTGCAACTTCAG
128 CCACTCCACTGCAACTTCAGGAAGACAGGATT-T-GTGATTTAACATGCCCCACTGCAACTTCAG
23797545 GAGGATAAGA
191 GAGGATAAGA
23797555 CTTGATGCGA
Statistics
Matches: 172, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
215 15 0.09
216 49 0.28
217 103 0.60
218 4 0.02
219 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (216 bp):
TGCCCCACTGCAACTTCAAGGGGATAAAACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGG
GAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGATCTAAGGTTTTAATCCA
CTCCACTGCAACTTCAGGAAGACAGGATTTGTGATTTAACATGCCCCACTGCAACTTCAGGAGGA
TAAGATTCGTCATCTTCAGTT
Found at i:23797536 original size:128 final size:128
Alignment explanation
Indices: 23797397--23797682 Score: 475
Period size: 128 Copynumber: 2.2 Consensus size: 128
23797387 ATTACTTAGT
* * *
23797397 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTTTGCAACTTCAGAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGA
* * *
23797462 TAAGATCTAAGGTTTTAATCCACTTCACTGCAACTTCAGGAAGATATGATTATCGGCTTTAAC
66 TAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAAC
* *
23797525 CTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 CTGCTCCACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAG
*
23797589 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATTGGCTTTAAC
65 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAAC
23797653 CTGCTCCACTGCAACTTCAGGGAGATAAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA
23797683 TTTGTCATCT
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
127 3 0.02
128 140 0.96
129 3 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (128 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGA
TAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAAC
Found at i:23797773 original size:345 final size:343
Alignment explanation
Indices: 23797181--23797899 Score: 998
Period size: 345 Copynumber: 2.1 Consensus size: 343
23797171 TTTCTTGAGT
*
23797181 CTGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGCGATCTACTCTACTGCAACTTCAGAGAG
*** * * ** **
23797246 AAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATG
66 AAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTTGTGGATTTAACATG
* *
23797311 CCCCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTTTGCCCCACTGCAACTTCAGGAG
131 CCCCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTGCCCCACTACAACTTCAGGAG
*
23797376 GATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTG
196 GATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* *
23797441 CTCTTTGCAACTTCAGAGAGATAAGATC-TAAGGTTTTAATCCACTTCACTGCAACTTCAGGAAG
261 CTCTCTGCAACTTCAGAGAGATAAGATCGTAA--TTTTAATCCACTCCACTGCAACTTCAGGAAG
* *
23797505 ATATGATTATCGGCTTTAAC
324 ATAGGATTATCGACTTTAAC
* * *
23797525 CTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCT-CTGCAACTTCAAAGA
1 CTGCTCCACTGCAACTTCAGGGA-GATAAGACTCGATGCGATCTACTCTACTGCAACTTC--AGA
* * *
23797588 GATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTAT-TGGCTTTAA
63 GAGAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATT-TGTGGATTTAA
* * * *
23797652 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCT-CCCTCACTACAACTTC
127 CATGCCCCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTGCCC-CACTACAACTTC
* * * *
23797716 AGGAGGATAAGACTTGCTTGCTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGCG
191 AGGAGGATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCG
*
23797781 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAG
256 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATC-GTAATTTTAATCCACTCCACTGCAACTTCAG
* * *
23797846 GGAGATAGGATTGTCGACTTTAAT
320 GAAGATAGGATTATCGACTTTAAC
* *
23797870 TTGCTCCACTGCAACCTCAGGGAGATAAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA
23797900 ATTGCCATCT
Statistics
Matches: 329, Mismatches: 38, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
343 13 0.04
344 43 0.13
345 266 0.81
346 4 0.01
347 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (343 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGCGATCTACTCTACTGCAACTTCAGAGAG
AAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTTGTGGATTTAACATG
CCCCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTGCCCCACTACAACTTCAGGAG
GATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
CTCTCTGCAACTTCAGAGAGATAAGATCGTAATTTTAATCCACTCCACTGCAACTTCAGGAAGAT
AGGATTATCGACTTTAAC
Found at i:23797930 original size:173 final size:169
Alignment explanation
Indices: 23797313--23798161 Score: 624
Period size: 173 Copynumber: 4.9 Consensus size: 169
23797303 TTAGTATGCC
* * *
23797313 CCACTGCAACTTCAGAGAGATAAGATTCGTC-ATCTTCAGTTTGCCCCACTGCAACTTCAGGAGG
1 CCACTGCAACTTCAGGGAGATAAGATT-GTCGA-CTTTAATTTGCCCCACTGCAACTTCAGGAGG
*
23797377 ATAA-AACTTG-ATTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATT
64 ATAAGAA-TTGCA-T-CTTCAGTCTGCT-CACTGCAACTTCA-GGAGATAAGACTAGATGCGATC
** *
23797439 TGCT-CTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
124 TGCTCCACTGCAACTTCAGAGAGATAAGATCTAA--TTTTAATCCGCT
* * * * * **
23797486 TCACTGCAACTTCAGGAAGATATGATTATCGGCTTTAACCTGCCCCACTGCAACTTCAGGAGGAT
1 CCACTGCAACTTCAGGGAGATAAGATTGTCGACTTTAATTTGCCCCACTGCAACTTCAGGAGGAT
* * * * * * *** **
23797551 AAGACTTG-A--TGC-GATCTGCTCTCTGCAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCA
66 AAGAATTGCATCTTCAG-TCTGCTCACTGCAACTTC-AGGAGATAAGA--CTA-GATGCGATCTG
* *
23797612 CTCCACTGCAACTTCAG-GAAGATAGGAT-TATTGGCTTTAA-CCTGCT
126 CTCCACTGCAACTTCAGAG-AGATAAGATCTAAT---TTTAATCC-GCT
* * * *
23797658 CCACTGCAACTTCAGGGAGATAAGATTTGTC-ATCTTCAGTCT-CCCTCACTACAACTTCAGGAG
1 CCACTGCAACTTCAGGGAGATAAGA-TTGTCGA-CTTTAATTTGCCC-CACTGCAACTTCAGGAG
* * *
23797721 GATAAGACTTGCTTGCTT-AGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGCGATCT
63 GATAAGAATTGCAT-CTTCAGTCTGCT-CACTGCAACTTCA-GGAGATAAGACTAGATGCGATCT
*
23797785 GCT-CTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCT
125 GCTCCACTGCAACTTCAGAGAGATAAGATC--TAATTTTAATCCGCT
* * *
23797831 CCACTGCAACTTCAGGGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGG-GAGA
1 CCACTGCAACTTCAGGGAGATAAGATTGTCGACTTTAATTTGCCCCACTGCAACTTCAGGAG-GA
* * * * *
23797895 TAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTC
65 TAAGAATTG-CATCTTCAGTCTG-CTCACTGCAACTTCAGGA-GATAAGACTAG-ATGC-GA-TC
* * *** *
23797960 TGCTCCACTACAACTTCAGGGAGATAAGA-CTAGA-TGCGATCTGCT
124 TGCTCCACTGCAACTTCAGAGAGATAAGATCTA-ATTTTAATCCGCT
* * * * *
23798005 -CTCTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGG-GAGA
1 CCACTGCAACTTCAGGGAGATAAGATTGTCGACTTTAATTTGCCCCACTGCAACTTCAGGAG-GA
* * * * *
23798068 TAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTC
65 TAAGAATTG-CATCTTCAGTCTG-CTCACTGCAACTTCAGGA-GATAAGACTAG-ATGC-GA-TC
* *
23798133 TGCTCCACTACAACTTCAGGGAGATAAGA
124 TGCTCCACTGCAACTTCAGAGAGATAAGA
23798162 CTAGATGCGA
Statistics
Matches: 560, Mismatches: 75, Indels: 82
0.78 0.10 0.11
Matches are distributed among these distances:
168 22 0.04
169 8 0.01
170 2 0.00
171 12 0.02
172 129 0.23
173 301 0.54
174 23 0.04
175 4 0.01
176 17 0.03
177 42 0.08
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (169 bp):
CCACTGCAACTTCAGGGAGATAAGATTGTCGACTTTAATTTGCCCCACTGCAACTTCAGGAGGAT
AAGAATTGCATCTTCAGTCTGCTCACTGCAACTTCAGGAGATAAGACTAGATGCGATCTGCTCCA
CTGCAACTTCAGAGAGATAAGATCTAATTTTAATCCGCT
Found at i:23797964 original size:89 final size:89
Alignment explanation
Indices: 23797871--23798161 Score: 366
Period size: 89 Copynumber: 3.3 Consensus size: 89
23797861 GACTTTAATT
*
23797871 TGCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGG
1 TGCTCCACTACAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGG
23797936 AGGATAAGACTTGCTTACTTAGTC
66 AGGATAAGACTTGCTTACTTAGTC
* * * * * *
23797960 TGCTCCACTACAACTTCAGGGAGATAAGACTAG--A--TGC-GATCTG-CTCTCTGCAACTTCA-
1 TGCTCCACTACAACCTCAGGGAGATAAGAATTGCCATCTTCAG-TTTGCCTCACTGCAACTTCAG
* * * *
23798018 GAGAGATAGGA-TTG-TCGACTTTAATT
65 GAG-GATAAGACTTGCT-TAC-TTAGTC
*
23798044 TGCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGG
1 TGCTCCACTACAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGG
23798109 AGGATAAGACTTGCTTACTTAGTC
66 AGGATAAGACTTGCTTACTTAGTC
*
23798133 TGCTCCACTACAACTTCAGGGAGATAAGA
1 TGCTCCACTACAACCTCAGGGAGATAAGA
23798162 CTAGATGCGA
Statistics
Matches: 165, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
82 1 0.01
83 8 0.05
84 54 0.33
85 5 0.03
86 1 0.01
87 1 0.01
88 5 0.03
89 81 0.49
90 8 0.05
91 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (89 bp):
TGCTCCACTACAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGG
AGGATAAGACTTGCTTACTTAGTC
Found at i:23798051 original size:217 final size:216
Alignment explanation
Indices: 23797525--23798069 Score: 786
Period size: 217 Copynumber: 2.5 Consensus size: 216
23797515 CGGCTTTAAC
* * *
23797525 CTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 CTGCTCCACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
*** * * * * *
23797589 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATTGGCTTTAACC
65 ATAAGAT-TGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTAACC
* * *
23797654 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTCCCTCACTACAACTTCAGG
129 TGCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTCTCCCTCACTACAACTTCAGG
*
23797719 AGGATAAGACTTGCTTGCTTAGT
194 AGGATAAGACTTGCTTACTTAGT
*
23797742 CTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
* * **
23797807 TAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTTTAATTT
66 TAAGAT-TGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTAACCT
* * *
23797872 GCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGA
130 GCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTCTCCCTCACTACAACTTCAGGA
23797937 GGATAAGACTTGCTTACTTAGT
195 GGATAAGACTTGCTTACTTAGT
*
23797959 CTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
* * ** *
23798024 TAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATA
66 TAAGATTGT-GATTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
23798070 AGAATTGCCA
Statistics
Matches: 295, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
216 3 0.01
217 289 0.98
218 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (216 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
TAAGATTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTAACCTG
CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTCTCCCTCACTACAACTTCAGGAG
GATAAGACTTGCTTACTTAGT
Found at i:23798149 original size:217 final size:217
Alignment explanation
Indices: 23797525--23798163 Score: 782
Period size: 217 Copynumber: 2.9 Consensus size: 217
23797515 CGGCTTTAAC
* * *
23797525 CTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAG
1 CTGCTCCACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
*** * * * * *
23797589 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATTGGC-T-TTAA
65 ATAAGAT-TGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA--ATTGCCATCTTAA
** * *
23797652 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TCATCTTCAGTCTCCCTCACTACAACTTC
127 TTTGCTCCACTGCAACTTCAGGGAGATAAGAATTGCTCATCTTCAGTCTGCCTCACTACAACTTC
*
23797716 AGGAGGATAAGACTTGCTTGCTTAGT
192 AGGAGGATAAGACTTGCTTACTTAGT
*
23797742 CTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
* * *
23797807 TAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGAT-AGGATTGTCGA-CTTTAAT
66 TAAGAT-TGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAATTG-CCATC-TTAAT
* * *
23797870 TTGCTCCACTGCAACCTCAGGGAGATAAGAATTGC-CATCTTCAGTTTGCCTCACTGCAACTTCA
128 TTGCTCCACTGCAACTTCAGGGAGATAAGAATTGCTCATCTTCAGTCTGCCTCACTACAACTTCA
23797934 GGAGGATAAGACTTGCTTACTTAGT
193 GGAGGATAAGACTTGCTTACTTAGT
*
23797959 CTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
* * ** * *
23798024 TAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTT
66 TAAGATTGT-GATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAATTGCCATCTT-AATT
* *
23798089 TGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTA-CTT-AGTCTG-CTCCACTACAACTT
129 TGCTC-CACTGCAACTTCAGGGA-GATAAGAATTGCTCATCTTCAGTCTGCCT-CACTACAACTT
23798149 CAGG-GAGATAAGACT
191 CAGGAG-GATAAGACT
23798164 AGATGCGATC
Statistics
Matches: 368, Mismatches: 39, Indels: 30
0.84 0.09 0.07
Matches are distributed among these distances:
214 4 0.01
216 7 0.02
217 314 0.85
218 42 0.11
219 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (217 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGA
TAAGATTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAATTGCCATCTTAATTTG
CTCCACTGCAACTTCAGGGAGATAAGAATTGCTCATCTTCAGTCTGCCTCACTACAACTTCAGGA
GGATAAGACTTGCTTACTTAGT
Found at i:23798162 original size:173 final size:173
Alignment explanation
Indices: 23797834--23798198 Score: 721
Period size: 173 Copynumber: 2.1 Consensus size: 173
23797824 ATCCGCTCCA
*
23797834 CTGCAACTTCAGGGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAG
23797899 AATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
66 AATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
23797964 CCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
131 CCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
23798007 CTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAG
23798072 AATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
66 AATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
23798137 CCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
131 CCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
23798180 CTGCAACTTCAGAGAGATA
1 CTGCAACTTCAGAGAGATA
23798199 AGATCCAAAA
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 191 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (173 bp):
CTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAG
AATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
CCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
Found at i:23798223 original size:84 final size:82
Alignment explanation
Indices: 23797958--23798240 Score: 255
Period size: 84 Copynumber: 3.3 Consensus size: 82
23797948 GCTTACTTAG
23797958 TCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
* * * *
23798023 ATAGGATTGTCGACTTTAA
66 ATAAGA-T-CCAAATTTAA
* * * * * * * *
23798042 TTTGCTCCACTGCAACCTCAGGGAGATAAGAATTGCCAT-CTTCAGTTTGCCTCACTGCAACTTC
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTAG--ATGC--GA-TCTG-CTCTCTGCAACTTC
* ** * *
23798106 AG-GAGGATAAGACTTGCTTACTTAG
60 AGAGA-GATAAGA--TCCAAATTTAA
23798131 TCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
23798196 ATAAGATCCAAAATTTTAA
66 ATAAGATCC-AAA-TTTAA
** *
23798215 TCCACTCCACTGCAACTTCAGGGAGA
1 TCTGCTCCACTACAACTTCAGGGAGA
23798241 CAAGGCTTGG
Statistics
Matches: 156, Mismatches: 31, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
82 2 0.01
83 1 0.01
84 78 0.50
85 6 0.04
86 3 0.02
87 3 0.02
88 6 0.04
89 55 0.35
90 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (82 bp):
TCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
ATAAGATCCAAATTTAA
Found at i:23798225 original size:173 final size:173
Alignment explanation
Indices: 23797873--23798240 Score: 637
Period size: 173 Copynumber: 2.1 Consensus size: 173
23797863 CTTTAATTTG
23797873 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAG
1 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAG
23797938 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG
66 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG
* ***** ***
23798003 CTCTCTGCAACTTCAGAGAGATAGGATTGTCGACTTTAATTTG
131 CTCTCTGCAACTTCAGAGAGATAAGATCCAAAACTTTAATCCA
23798046 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAG
1 CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAG
23798111 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG
66 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG
*
23798176 CTCTCTGCAACTTCAGAGAGATAAGATCCAAAATTTTAATCCA
131 CTCTCTGCAACTTCAGAGAGATAAGATCCAAAACTTTAATCCA
*
23798219 CTCCACTGCAACTTCAGGGAGA
1 CTCCACTGCAACCTCAGGGAGA
23798241 CAAGGCTTGG
Statistics
Matches: 184, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
173 184 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (173 bp):
CTCCACTGCAACCTCAGGGAGATAAGAATTGCCATCTTCAGTTTGCCTCACTGCAACTTCAGGAG
GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTG
CTCTCTGCAACTTCAGAGAGATAAGATCCAAAACTTTAATCCA
Found at i:23798333 original size:132 final size:132
Alignment explanation
Indices: 23798232--23798643 Score: 646
Period size: 132 Copynumber: 3.1 Consensus size: 132
23798222 CACTGCAACT
23798232 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTACCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTACCG
* * *
23798297 TCTTCGATCTGCTCCACTACTGTTTAGGGAGGTAAGATCTACAATCTTCAACCTACTCCGCTGCT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
23798362 GC
131 GC
* * **
23798364 TCAGAGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAT-ATTTTTC
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGAT-ATGATTTACC
* *
23798428 GTCTTCAATCTTCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGC
65 GTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGC
23798493 TGC
130 TGC
*
23798496 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTACCG
* * * * * * * *
23798561 TCCTCGATCTACTCTACTACTACTTAAGGAGATAAGATCTACGATCCTCAACCTACTCCGTTGTT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
23798626 GC
131 GC
23798628 TCAGGGAGACAAGGCT
1 TCAGGGAGACAAGGCT
23798644 AAGTGTTTCA
Statistics
Matches: 255, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 252 0.99
133 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTACCG
TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
GC
Found at i:23805424 original size:19 final size:21
Alignment explanation
Indices: 23805386--23805424 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23805376 CCTTTTTTAA
*
23805386 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
23805407 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
23805425 AGAAAACAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:23805620 original size:21 final size:23
Alignment explanation
Indices: 23805594--23805639 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
23805584 TAAAGGATAT
*
23805594 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
23805615 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
23805638 TT
1 TT
23805640 GCATATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:23805638 original size:23 final size:24
Alignment explanation
Indices: 23805608--23805654 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
23805598 AAATTAAATC
23805608 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
23805631 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
23805655 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:23809948 original size:14 final size:15
Alignment explanation
Indices: 23809929--23809957 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23809919 AAGTTTCCTC
23809929 TTCTTTTTT-TTTCT
1 TTCTTTTTTCTTTCT
23809943 TTCTTTTTTCTTTCT
1 TTCTTTTTTCTTTCT
23809958 AATATGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTCTTTTTTCTTTCT
Found at i:23809951 original size:11 final size:11
Alignment explanation
Indices: 23809929--23809957 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
23809919 AAGTTTCCTC
23809929 TTCTTT-TTTT
1 TTCTTTCTTTT
23809939 TTCTTTCTTTT
1 TTCTTTCTTTT
23809950 TTCTTTCT
1 TTCTTTCT
23809958 AATATGAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTCTTTCTTTT
Found at i:23822983 original size:38 final size:38
Alignment explanation
Indices: 23822941--23823017 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
23822931 TAAAGGGGAA
23822941 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
1 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
23822979 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
1 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
23823017 A
1 A
23823018 ACAAGAAGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.61, C:0.03, G:0.29, T:0.08
Consensus pattern (38 bp):
AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
Found at i:23823689 original size:21 final size:20
Alignment explanation
Indices: 23823665--23823714 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
23823655 AAGAATGGAG
23823665 AAATGATAATCTTGTT-AAGCC
1 AAATGATAAT-TTGTTAAAG-C
23823686 AAATG-TCAATTTGTTCAAAGC
1 AAATGAT-AATTTGTT-AAAGC
23823707 AAATGATA
1 AAATGATA
23823715 TCATTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 6 0.24
21 15 0.60
22 4 0.16
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (20 bp):
AAATGATAATTTGTTAAAGC
Found at i:23835325 original size:19 final size:19
Alignment explanation
Indices: 23835301--23835338 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
23835291 TCCTGCACTT
23835301 GGAAGAAAAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
*
23835320 GGAAGAAGAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
23835339 AGAATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (19 bp):
GGAAGAAAAAGTAGAAAAA
Found at i:23839968 original size:25 final size:25
Alignment explanation
Indices: 23839940--23840010 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
23839930 AGCTATTCCA
* *
23839940 AGCTGAATAACGGGAAGCTCAAGTG
1 AGCTGAATAACAGGAAGCTCAAGCG
* * *
23839965 AGCTGTATACCAGGAAGCTCATGCG
1 AGCTGAATAACAGGAAGCTCAAGCG
* * *
23839990 AGCTGAGTATCAGCAAGCTCA
1 AGCTGAATAACAGGAAGCTCA
23840011 TAAGAGCTGT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.18
Consensus pattern (25 bp):
AGCTGAATAACAGGAAGCTCAAGCG
Found at i:23847306 original size:25 final size:25
Alignment explanation
Indices: 23847278--23847335 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
23847268 TGTAAACAGT
* * *
23847278 AAGCTCTTCCAAGCTGAATAATGGG
1 AAGCTCATCCAAGCTAAATAACGGG
* *
23847303 AAGCTCATGCGAGCTAAATAACGGG
1 AAGCTCATCCAAGCTAAATAACGGG
23847328 AAGCTCAT
1 AAGCTCAT
23847336 GTGAGCTGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (25 bp):
AAGCTCATCCAAGCTAAATAACGGG
Found at i:23847336 original size:25 final size:25
Alignment explanation
Indices: 23847289--23847360 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
23847279 AGCTCTTCCA
*
23847289 AGCTGAATAATGGGAAGCTCATGCG
1 AGCTGAATAACGGGAAGCTCATGCG
* *
23847314 AGCTAAATAACGGGAAGCTCATGTG
1 AGCTGAATAACGGGAAGCTCATGCG
* *
23847339 AGCTGTAT-ACAGGAAGCTCATG
1 AGCTGAATAACGGGAAGCTCATG
23847361 AGAGTTGAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 13 0.32
25 28 0.68
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (25 bp):
AGCTGAATAACGGGAAGCTCATGCG
Found at i:23856841 original size:16 final size:16
Alignment explanation
Indices: 23856820--23856850 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23856810 TCCCAACCCC
*
23856820 ATGCAGTATGTCATGT
1 ATGCAGTATGCCATGT
23856836 ATGCAGTATGCCATG
1 ATGCAGTATGCCATG
23856851 CTCAAAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (16 bp):
ATGCAGTATGCCATGT
Found at i:23864471 original size:22 final size:22
Alignment explanation
Indices: 23864443--23864494 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
23864433 AAGTATTTTA
23864443 AAAGACA-TGATGCAAAAATATT
1 AAAGACATTG-TGCAAAAATATT
*
23864465 AAAGACATTGTTCAAAAATATT
1 AAAGACATTGTGCAAAAATATT
23864487 AAATGACA
1 AAA-GACA
23864495 ATATTAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.25
Consensus pattern (22 bp):
AAAGACATTGTGCAAAAATATT
Found at i:23864523 original size:16 final size:16
Alignment explanation
Indices: 23864502--23864545 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
23864492 ACAATATTAA
23864502 GAATTTTTAGATAATT
1 GAATTTTTAGATAATT
*
23864518 GAATTTTTAAATAATT
1 GAATTTTTAGATAATT
*
23864534 GAAATTTTAGAT
1 GAATTTTTAGAT
23864546 GTTTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (16 bp):
GAATTTTTAGATAATT
Found at i:23866710 original size:26 final size:23
Alignment explanation
Indices: 23866674--23866722 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 23
23866664 GACATTGCTA
*
23866674 TATATGTTTGATTAGTCTGATATATG
1 TATATATTTGA-TA-TCTG-TATATG
23866700 TATATATTTGATATCTGTATATG
1 TATATATTTGATATCTGTATATG
23866723 AGCATGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 4 0.18
25 2 0.09
26 10 0.45
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (23 bp):
TATATATTTGATATCTGTATATG
Found at i:23878884 original size:15 final size:15
Alignment explanation
Indices: 23878866--23878896 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23878856 GTAAAAACTG
23878866 AAAACAATTAAATAA
1 AAAACAATTAAATAA
*
23878881 AAAACAGTTAAATAA
1 AAAACAATTAAATAA
23878896 A
1 A
23878897 TCTGAAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAACAATTAAATAA
Found at i:23883103 original size:3 final size:3
Alignment explanation
Indices: 23883097--23883124 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
23883087 GTTACTTTTG
23883097 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23883125 ACCTATACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23893182 original size:24 final size:24
Alignment explanation
Indices: 23893153--23893201 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
23893143 TTTCTAGAAG
* *
23893153 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
23893177 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
23893201 A
1 A
23893202 GTTGACTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:23893323 original size:24 final size:23
Alignment explanation
Indices: 23893295--23893340 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
23893285 TTTGGAGAAT
*
23893295 TTTGTGTTTATGTTTTGAGGGTTA
1 TTTGTGTTTAGGTTTTG-GGGTTA
* *
23893319 TTTGTTTTTGGGTTTTGGGGTT
1 TTTGTGTTTAGGTTTTGGGGTT
23893341 TAATTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.07, C:0.00, G:0.33, T:0.61
Consensus pattern (23 bp):
TTTGTGTTTAGGTTTTGGGGTTA
Found at i:23896694 original size:15 final size:15
Alignment explanation
Indices: 23896674--23896727 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
23896664 AACCTAACTT
23896674 TTTTAATTTTAATTA
1 TTTTAATTTTAATTA
*
23896689 TTTTAATATTTATTTA
1 TTTTAAT-TTTAATTA
* *
23896705 -ATTAATTCCTAATTA
1 TTTTAATT-TTAATTA
23896720 TTTTAATT
1 TTTTAATT
23896728 ACCTAACCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 1 0.03
15 17 0.55
16 13 0.42
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTAATTTTAATTA
Found at i:23898246 original size:23 final size:24
Alignment explanation
Indices: 23898220--23898286 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
23898210 AGATGACTTT
*
23898220 ATATAAAATTTTAATAAATA-AAA
1 ATATAAAATATTAATAAATATAAA
*
23898243 ATATATAAA-ATTATTAAATATAAA
1 ATATA-AAATATTAATAAATATAAA
*
23898267 AT-TAAAATAAT-ATAAATATA
1 ATATAAAATATTAATAAATATA
23898287 TATTTTGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
22 11 0.30
23 18 0.49
24 8 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
ATATAAAATATTAATAAATATAAA
Found at i:23898247 original size:25 final size:25
Alignment explanation
Indices: 23898219--23898267 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
23898209 AAGATGACTT
23898219 TATATAAAATT-TTAATAAATAAAAA
1 TATATAAAATTATTAA-AAATAAAAA
*
23898244 TATATAAAATTATTAAATATAAAA
1 TATATAAAATTATTAAAAATAAAA
23898268 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
TATATAAAATTATTAAAAATAAAAA
Found at i:23898283 original size:15 final size:14
Alignment explanation
Indices: 23898233--23898283 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
23898223 TAAAATTTTA
*
23898233 ATAAATAAAAATAT
1 ATAAATTAAAATAT
23898247 ATAAAATTATTAAATAT
1 AT-AAATTA--AAATAT
23898264 A-AAATTAAAATAAT
1 ATAAATTAAAAT-AT
23898278 ATAAAT
1 ATAAAT
23898284 ATATATTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.13
14 5 0.16
15 15 0.48
17 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:23900043 original size:23 final size:23
Alignment explanation
Indices: 23899999--23900043 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
23899989 AATTTAGTCC
* *
23899999 TTAAATTTATATTACATGTAAAT
1 TTAAATATATATTACATCTAAAT
23900022 TTAAATATATA-TATCATCTAAA
1 TTAAATATATATTA-CATCTAAA
23900044 AAGGTGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (23 bp):
TTAAATATATATTACATCTAAAT
Found at i:23907197 original size:16 final size:18
Alignment explanation
Indices: 23907172--23907209 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23907162 TATTATTGAC
*
23907172 TTTT-ATTTTTAA-TTTT
1 TTTTAATTTTCAAGTTTT
23907188 TTTTAATTTTCAAGTTTT
1 TTTTAATTTTCAAGTTTT
23907206 TTTT
1 TTTT
23907210 TCTCTCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 7 0.37
18 8 0.42
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTAATTTTCAAGTTTT
Found at i:23911437 original size:23 final size:23
Alignment explanation
Indices: 23911402--23911471 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
23911392 TACGAGTAGG
* *
23911402 ATCTAAATCTGTATCTGTTATGC
1 ATCTGAATATGTATCTGTTATGC
* *
23911425 ATCTGAATTTGTATCT-ATATGC
1 ATCTGAATATGTATCTGTTATGC
*
23911447 ATCTGAAAGATGTATCTGTTATGC
1 ATCTG-AATATGTATCTGTTATGC
23911471 A
1 A
23911472 CTTGTGTCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
22 10 0.26
23 23 0.59
24 6 0.15
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (23 bp):
ATCTGAATATGTATCTGTTATGC
Found at i:23913716 original size:21 final size:21
Alignment explanation
Indices: 23913691--23913730 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23913681 CAAGCACAAT
23913691 ATAATGTA-AATATATAATCCA
1 ATAAT-TATAATATATAATCCA
*
23913712 ATAATTATAATATCTAATC
1 ATAATTATAATATATAATC
23913731 AAATTAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (21 bp):
ATAATTATAATATATAATCCA
Found at i:23915976 original size:152 final size:152
Alignment explanation
Indices: 23915820--23916119 Score: 447
Period size: 152 Copynumber: 2.0 Consensus size: 152
23915810 AGTAGTGCAT
* * * *
23915820 TATATATTAATGTTTATTATTATACTAGTTGAAATATGCTCTAAGTTCCTATCCTTTTCGTACAT
1 TATATACTAATGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCATACAT
* ** * * *
23915885 TTGAAAGTTAGCTGTCATACTATATTATATAATGCTATATCATGTCATGTATTAATAATATTTAT
66 TTAAAAGTTAGCCCTCATACTATATTATATAATGCTATATCATATCATATATCAATAATATTTAT
*
23915950 ATATGCACAAATTATTAATTAG
131 ATATGCACAAATGATTAATTAG
* *
23915972 TATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCATACAT
1 TATATACTAATGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCATACAT
* * *
23916037 TTAAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCATATCATATATCAATAATTTTTAT
66 TTAAAAGTTAGCCCTCATACTATATTATATAATGCTATATCATATCATATATCAATAATATTTAT
*
23916102 ATATGCATAAATGATTAA
131 ATATGCACAAATGATTAA
23916120 ACATTATAAT
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
152 131 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (152 bp):
TATATACTAATGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACTTTTCATACAT
TTAAAAGTTAGCCCTCATACTATATTATATAATGCTATATCATATCATATATCAATAATATTTAT
ATATGCACAAATGATTAATTAG
Found at i:23916245 original size:238 final size:245
Alignment explanation
Indices: 23915962--23916432 Score: 634
Period size: 238 Copynumber: 1.9 Consensus size: 245
23915952 ATGCACAAAT
23915962 TATTAATTAGTATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATA-T
1 TATTAATTAGTATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACT
*
23916026 TTTTCATACATTTAAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCATATCATA-TAT-
66 TTTT-ATACATTTAAAAGTTAGCCCTCCTACTATATTATATAATGCTATATCATATCATATTATA
* * ** *
23916089 CA-A-TAAT-TTT-TATATATGCATAAATGATTAAACATTATAATATCATGTAATGTTGTA-TCT
130 CATATTAATATTTATATATATGCATAAATGATGAAACATTATAATATAATGTAATACTATATTCT
*
23916149 TTTATTATAATCTATATTATAATTATAGTTATATAACAGTAGTACATTATA
195 TTTATTATAATCTATATTATAATAATAGTTATATAACAGTAGTACATTATA
* * * * **
23916200 TATTACTTATTATATATTATTGTTTATTATTATACTAGTTGAAATATGTTCTAAGTCTTTATACT
1 TATTAATTAGTATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACT
* * * *
23916265 TTTTGTACATTTAAAAGTTAGTCCTCCTACTATATTATTTAATGCTATATCATATCATATTATAT
66 TTTTATACATTTAAAAGTTAGCCCTCCTACTATATTATATAATGCTATATCATATCATATTATAC
*** *
23916330 ATTATTTTAATAGTTTATATATATGCATTTTTTATGAAACATTATAATATAATGTAATACTATAT
131 A-TA--TTAATA-TTTATATATATGCATAAATGATGAAACATTATAATATAATGTAATACTATAT
* *
23916395 TTTTTTATTATAATCTATATTATTATAATAGTTATATA
192 TCTTTTATTATAATCTATATTATAATAATAGTTATATA
23916433 TGTATTAATA
Statistics
Matches: 198, Mismatches: 23, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
238 108 0.55
239 8 0.04
240 1 0.01
242 1 0.01
245 4 0.02
247 3 0.02
248 38 0.19
249 35 0.18
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (245 bp):
TATTAATTAGTATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATACT
TTTTATACATTTAAAAGTTAGCCCTCCTACTATATTATATAATGCTATATCATATCATATTATAC
ATATTAATATTTATATATATGCATAAATGATGAAACATTATAATATAATGTAATACTATATTCTT
TTATTATAATCTATATTATAATAATAGTTATATAACAGTAGTACATTATA
Found at i:23916454 original size:30 final size:27
Alignment explanation
Indices: 23916411--23916475 Score: 94
Period size: 30 Copynumber: 2.3 Consensus size: 27
23916401 ATTATAATCT
23916411 ATATTATTATAATAGTTATATATGTATTA
1 ATATTATTATAATAGTTATATAT-TA-TA
*
23916440 ATATTTTTAGTAATAGTTATATATTATA
1 ATATTATTA-TAATAGTTATATATTATA
23916468 ATATTATT
1 ATATTATT
23916476 TTATTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 9 0.27
29 10 0.30
30 14 0.42
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (27 bp):
ATATTATTATAATAGTTATATATTATA
Found at i:23916478 original size:30 final size:29
Alignment explanation
Indices: 23916400--23916479 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 29
23916390 TATATTTTTT
*
23916400 TATTATAATCTATATTATTATAATAGTTATA
1 TATTATAATAT-TATT-TTATAATAGTTATA
23916431 TATGTATTAATA-T-TTTTAGTAATAGTTATA
1 TAT-TA-TAATATTATTTTA-TAATAGTTATA
23916461 TATTATAATATTATTTTAT
1 TATTATAATATTATTTTAT
23916480 TTATTAGTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
28 5 0.12
29 7 0.16
30 21 0.49
31 4 0.09
32 2 0.05
33 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (29 bp):
TATTATAATATTATTTTATAATAGTTATA
Found at i:23918123 original size:53 final size:53
Alignment explanation
Indices: 23918012--23918135 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
23918002 GCCACACAAT
*
23918012 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGATGGACACACAGG
1 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
* *
23918065 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGCCACACGGG
1 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
* * *
23918118 TGTGTGGTAGACCATGTG
1 CGTGTGCTAGGCCATGTG
23918136 GACCACATGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 65 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (53 bp):
CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
Found at i:23918421 original size:15 final size:16
Alignment explanation
Indices: 23918401--23918430 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23918391 TACGCATATC
23918401 TGATATCTG-TAAATT
1 TGATATCTGTTAAATT
23918416 TGATATCTGTTAAAT
1 TGATATCTGTTAAAT
23918431 CTGCATCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (16 bp):
TGATATCTGTTAAATT
Found at i:23919324 original size:13 final size:13
Alignment explanation
Indices: 23919306--23919331 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23919296 AGTTTTTTTC
23919306 TATTTTTAATTAA
1 TATTTTTAATTAA
23919319 TATTTTTAATTAA
1 TATTTTTAATTAA
23919332 GAAATATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTTTAATTAA
Found at i:23919800 original size:26 final size:25
Alignment explanation
Indices: 23919749--23919800 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
23919739 ATTAATTTCA
*
23919749 AATATTTTTAATATAATGATATATAT
1 AATATTTTTAATATAAT-ATACATAT
23919775 AATATTTTTATTATATAAT-TACATAT
1 AATATTTTTA--ATATAATATACATAT
23919801 TTATTATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 16 0.70
28 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
AATATTTTTAATATAATATACATAT
Found at i:23919800 original size:28 final size:26
Alignment explanation
Indices: 23919749--23919809 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
23919739 ATTAATTTCA
*
23919749 AATATTTTTAATATAATGATATATAT
1 AATATTTTTAATATAATGACATATAT
* *
23919775 AATATTTTTATTATATAATTACATATTT
1 AATATTTTTA--ATATAATGACATATAT
*
23919803 ATTATTT
1 AATATTT
23919810 GATTTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.34
28 19 0.66
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
AATATTTTTAATATAATGACATATAT
Found at i:23921796 original size:15 final size:15
Alignment explanation
Indices: 23921778--23921890 Score: 59
Period size: 15 Copynumber: 7.3 Consensus size: 15
23921768 GAAGGAGCCA
23921778 AAGAAGGAAGAACCC
1 AAGAAGGAAGAACCC
* * *
23921793 AAGAAAGAGGAGGAGCC
1 AAG-AAG-GAAGAACCC
*
23921810 -A-AAGAAAGAACCC
1 AAGAAGGAAGAACCC
**
23921823 AAGAAGGAAGAAGAGCAG
1 AAGAAGGAAG-A-A-CCC
* * *
23921841 AAGAAAGAAGAGCCT
1 AAGAAGGAAGAACCC
* *
23921856 AAGAAGGAGGAACCA
1 AAGAAGGAAGAACCC
*
23921871 AAAAAGGAAGAACCC
1 AAGAAGGAAGAACCC
23921886 AAGAA
1 AAGAA
23921891 AGAGGAAGAG
Statistics
Matches: 69, Mismatches: 22, Indels: 14
0.66 0.21 0.13
Matches are distributed among these distances:
13 5 0.07
14 4 0.06
15 37 0.54
16 5 0.07
17 8 0.12
18 10 0.14
ACGTcount: A:0.56, C:0.14, G:0.29, T:0.01
Consensus pattern (15 bp):
AAGAAGGAAGAACCC
Found at i:23921905 original size:45 final size:45
Alignment explanation
Indices: 23921762--23921908 Score: 121
Period size: 45 Copynumber: 3.3 Consensus size: 45
23921752 CAAAAGAGCC
23921762 AGAG-AAGAAGGAG--CCAAAGAAGGAAGAACCCAAGAAAGAGGA
1 AGAGCAAGAAGGAGAACCAAAGAAGGAAGAACCCAAGAAAGAGGA
* * ** *
23921804 GGAGCCAAAGAA--AGAACCCAAGAAGGAAGAAGAGC-AG-AAGAAAGA
1 AGAG-C-AAGAAGGAGAACCAAAGAAGGAAGAA-CCCAAGAAAG-AGGA
*
23921849 AGAGCCTAAGAAGGAGGAACCAAAAAAGGAAGAACCCAAGAAAGAGGA
1 AGAG-C-AAGAAGGA-GAACCAAAGAAGGAAGAACCCAAGAAAGAGGA
23921897 AGAG-AAGAAGGA
1 AGAGCAAGAAGGA
23921909 AGAGGAGAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 21
0.71 0.11 0.18
Matches are distributed among these distances:
42 3 0.04
43 2 0.02
44 3 0.04
45 42 0.52
46 1 0.01
47 2 0.02
48 25 0.31
49 3 0.04
ACGTcount: A:0.55, C:0.12, G:0.32, T:0.01
Consensus pattern (45 bp):
AGAGCAAGAAGGAGAACCAAAGAAGGAAGAACCCAAGAAAGAGGA
Found at i:23921908 original size:30 final size:30
Alignment explanation
Indices: 23921778--23921911 Score: 110
Period size: 30 Copynumber: 4.4 Consensus size: 30
23921768 GAAGGAGCCA
*
23921778 AAGAAGGAAGAACCCAAGAAAGAGGAGGAG
1 AAGAAGGAAGAACCCAAGAAAGAGGAAGAG
* * * *
23921808 CCA-AAGAAAGAACCCAAGAAGGAAGAAGAGCAG
1 -AAGAAGGAAGAACCCAAGAAAG-AGGA-AG-AG
* * * * *
23921841 AAGAAAGAAGAGCCTAAGAAGGAGGAACCA-
1 AAGAAGGAAGAACCCAAGAAAGAGGAA-GAG
*
23921871 AAAAAGGAAGAACCCAAGAAAGAGGAAGAG
1 AAGAAGGAAGAACCCAAGAAAGAGGAAGAG
23921901 AAGAAGGAAGA
1 AAGAAGGAAGA
23921912 GGAGAAAAGG
Statistics
Matches: 78, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
29 1 0.01
30 49 0.63
31 6 0.08
32 5 0.06
33 17 0.22
ACGTcount: A:0.56, C:0.12, G:0.31, T:0.01
Consensus pattern (30 bp):
AAGAAGGAAGAACCCAAGAAAGAGGAAGAG
Found at i:23925169 original size:19 final size:19
Alignment explanation
Indices: 23925145--23925236 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
23925135 AATCTTCAAG
23925145 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23925164 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23925183 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
23925202 GATATGTAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
23925221 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23925237 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Done.