Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 85 of 199
Found at i:23925189 original size:38 final size:38
Alignment explanation
Indices: 23925145--23925243 Score: 175
Period size: 38 Copynumber: 2.7 Consensus size: 38
23925135 AATCTTCAAG
23925145 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
23925183 GATATGCAATCTTAGATATGATATGTAATCTTAGTTAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
23925221 GATATGCAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
23925244 ATTTTGTCAT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
36 6 0.10
37 1 0.02
38 53 0.88
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:23930460 original size:6 final size:6
Alignment explanation
Indices: 23930444--23930494 Score: 68
Period size: 6 Copynumber: 8.3 Consensus size: 6
23930434 TGATGATGGA
*
23930444 AAAAAG GAAAAG AAAAAG -AAAAG AAAAAG AAAAAG AAAGAAG AAAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AAA-AAG
23930493 AA
1 AA
23930495 GAGGAAAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.12
6 24 0.59
7 12 0.29
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23930465 original size:17 final size:17
Alignment explanation
Indices: 23930445--23930505 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
23930435 GATGATGGAA
23930445 AAAAGGAAAAGAAAAAG
1 AAAAGGAAAAGAAAAAG
*
23930462 AAAAGAAAAAGAAAAAG
1 AAAAGGAAAAGAAAAAG
23930479 -AAA-G--AAGAAAGAAG
1 AAAAGGAAAAGAAA-AAG
*
23930493 AAGAGGAAAAGAA
1 AAAAGGAAAAGAA
23930506 GAGGCCAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
13 6 0.17
14 3 0.08
15 2 0.06
16 4 0.11
17 16 0.44
18 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (17 bp):
AAAAGGAAAAGAAAAAG
Found at i:23931797 original size:44 final size:44
Alignment explanation
Indices: 23931749--23932042 Score: 419
Period size: 44 Copynumber: 6.7 Consensus size: 44
23931739 ACAAAATTTT
* * *
23931749 TCTCCTTGGTCAGCAGTGGAATATGTTGAAAATTGTAAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * *
23931793 TCTCCCTGGTCAGCAGTGGAATAGGCTGAAGAGTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * * *
23931837 TTTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCTTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
23931881 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * *
23931925 TCTCTCTGGTCAGCAATGGAATAGGTTGAAGATTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* *
23931969 TCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* *
23932013 TCTCCCTGAG-CAACAGTGGAGTAGGTTGAA
1 TCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
23932043 AGTAGCAGAT
Statistics
Matches: 221, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 220 1.00
45 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
Found at i:23932164 original size:50 final size:50
Alignment explanation
Indices: 23932096--23932213 Score: 112
Period size: 50 Copynumber: 2.4 Consensus size: 50
23932086 AAGACATCAG
* * * * *
23932096 TCTTATCGCCTTGACGTTGCA-CTGGAAAAGATTGAAGTCACAATGGCAAA
1 TCTTATCTCCCTGGCGTTGCAGC-GGAAAAGATTGAAGCCACAACGGCAAA
* * ** * **
23932146 TCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCACGACGGTGAA
1 TCTTATCTCCCTGGCGTTGCAGCGGAAAAGATTGAAGCCACAACGGCAAA
23932196 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
23932214 AAGGCTTGGA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 53 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAGCGGAAAAGATTGAAGCCACAACGGCAAA
Found at i:23932468 original size:44 final size:45
Alignment explanation
Indices: 23932406--23932516 Score: 156
Period size: 44 Copynumber: 2.5 Consensus size: 45
23932396 AAAGATGACG
*
23932406 AATCTTATCTC-CATGAAGTTGCAATGGAGCAGATTAAAGCCA-AT
1 AATCTTATCTCTC-TGAAGTTGCAATGGAGCAGATTAAAACCACAT
* * *
23932450 AATCCTATCTCTCTGAAGTTGCAATGGAGCGGATTAAAATCACAT
1 AATCTTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAACCACAT
23932495 -ATCTTATCTCTCTGAAGTTGCA
1 AATCTTATCTCTCTGAAGTTGCA
23932517 GAGAACAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
44 57 0.95
45 3 0.05
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (45 bp):
AATCTTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAACCACAT
Found at i:23932655 original size:44 final size:45
Alignment explanation
Indices: 23932534--23932657 Score: 196
Period size: 45 Copynumber: 2.8 Consensus size: 45
23932524 GATCATATCT
* *
23932534 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
*
23932579 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
* *
23932624 AGTCTTATC-CCCTGAAATTGCAGTGGGGCAGACT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
23932658 AAATAAACAA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
44 23 0.31
45 51 0.69
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
Found at i:23933231 original size:19 final size:19
Alignment explanation
Indices: 23933207--23933260 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
23933197 AATCTTCAAG
23933207 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23933226 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23933245 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23933261 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23933236 original size:36 final size:36
Alignment explanation
Indices: 23933196--23933267 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
23933186 TATGGAAACA
23933196 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
23933232 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
23933268 ATTTTGTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:23935635 original size:29 final size:29
Alignment explanation
Indices: 23935545--23935622 Score: 147
Period size: 29 Copynumber: 2.7 Consensus size: 29
23935535 TTTGATATCT
23935545 AAAATAAAAAAACTAAATTCCTGAAAATA
1 AAAATAAAAAAACTAAATTCCTGAAAATA
*
23935574 AAAATAAAAAAATTAAATTCCTGAAAATA
1 AAAATAAAAAAACTAAATTCCTGAAAATA
23935603 AAAATAAAAAAACTAAATTC
1 AAAATAAAAAAACTAAATTC
23935623 TAAATGTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.22
Consensus pattern (29 bp):
AAAATAAAAAAACTAAATTCCTGAAAATA
Found at i:23939847 original size:50 final size:50
Alignment explanation
Indices: 23939772--23939902 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 50
23939762 CATTTGGGTA
* *
23939772 AAGAGGTCCCATGTAAGACCATGTCTGGTACATGGCGTTGGCACCGAGAT
1 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
23939822 AAGAGGTCTTATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** *
23939872 GAGAACTCTCATGTAAGACCATATCTGGGAC
1 AAGAGGTCTCATGTAAGACCATGTCTGGGAC
23939903 CATGTAAGAC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:23939909 original size:22 final size:22
Alignment explanation
Indices: 23939881--23939924 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23939871 TGAGAACTCT
23939881 CATGTAAGACCATATCTGGGAC
1 CATGTAAGACCATATCTGGGAC
* *
23939903 CATGTAAGACCATGTTTGGGAC
1 CATGTAAGACCATATCTGGGAC
23939925 ATGGCTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (22 bp):
CATGTAAGACCATATCTGGGAC
Found at i:23944299 original size:27 final size:27
Alignment explanation
Indices: 23944269--23944603 Score: 245
Period size: 27 Copynumber: 12.4 Consensus size: 27
23944259 TAAAGTGACC
23944269 GAAATACCCTCGATGGGTAAAATTACT
1 GAAATACCCTCGATGGGTAAAATTACT
* *
23944296 GAAATACTCTCGATGGGTAAAATTATT
1 GAAATACCCTCGATGGGTAAAATTACT
* * *
23944323 GAAATACCCT-TATAGGGTAAAGTTAAT
1 GAAATACCCTCGAT-GGGTAAAATTACT
* * *
23944350 CGAAATACCCTTGAAGGGTAAAATTACC
1 -GAAATACCCTCGATGGGTAAAATTACT
*
23944378 GAAATACCCTCGACGGGTAAAATTA-T
1 GAAATACCCTCGATGGGTAAAATTACT
* * *
23944404 CGAAATACCCT-TATAGGATAAAATTACC
1 -GAAATACCCTCGAT-GGGTAAAATTACT
* **
23944432 GAAATACCCTCAAAAGGTAAAATTA-T
1 GAAATACCCTCGATGGGTAAAATTACT
* * ** *
23944458 CAAATACCCTTGACAGGTAAAATTATT
1 GAAATACCCTCGATGGGTAAAATTACT
* *
23944485 GAAATACCCTTGATAGGTAAAATTA-T
1 GAAATACCCTCGATGGGTAAAATTACT
23944511 CGAAATACCCTC-ATAGGGTAAAATTAC-
1 -GAAATACCCTCGAT-GGGTAAAATTACT
* * * *
23944538 CAACATACCC-CTAAAGGGTAAAATTACC
1 GAA-ATACCCTC-GATGGGTAAAATTACT
* * * * *
23944566 AAAATACCCCCAAAGGGTAAAATGACT
1 GAAATACCCTCGATGGGTAAAATTACT
*
23944593 AAAATAACCCT
1 GAAAT-ACCCT
23944604 ATAAGGTAAA
Statistics
Matches: 254, Mismatches: 37, Indels: 33
0.78 0.11 0.10
Matches are distributed among these distances:
26 30 0.12
27 194 0.76
28 29 0.11
29 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATTACT
Found at i:23944327 original size:54 final size:54
Alignment explanation
Indices: 23944257--23944588 Score: 291
Period size: 54 Copynumber: 6.1 Consensus size: 54
23944247 TGTCAATTGT
* * *
23944257 GGTAAAGTGACCGAAATACCCTCGATGGGTAAAATTA-CTGAAATACTCTCGATG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATC-GAAATACCCTCGATG
** * * * *
23944311 GGTAAAATTATTGAAATACCCT-TATAGGGTAAAGTTAATCGAAATACCCTTGAAG
1 GGTAAAATTACCGAAATACCCTCGAT-GGGTAAAATT-ATCGAAATACCCTCGATG
* *
23944366 GGTAAAATTACCGAAATACCCTCGACGGGTAAAATTATCGAAATACCCT-TATAG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGAT-G
* * ** * **
23944420 GATAAAATTACCGAAATACCCTCAAAAGGTAAAATTATC-AAATACCCTTGACA
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATG
** * *
23944473 GGTAAAATTATTGAAATACCCTTGATAGGTAAAATTATCGAAATACCCTC-ATAG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGAT-G
* * * * * * *
23944527 GGTAAAATTACC-AACATACCC-CTAAAGGGTAAAATTACCAAAATACCCCCAAAG
1 GGTAAAATTACCGAA-ATACCCTC-GATGGGTAAAATTATCGAAATACCCTCGATG
23944581 GGTAAAAT
1 GGTAAAAT
23944589 GACTAAAATA
Statistics
Matches: 225, Mismatches: 42, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
53 48 0.21
54 132 0.59
55 43 0.19
56 2 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (54 bp):
GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATG
Found at i:23944370 original size:82 final size:81
Alignment explanation
Indices: 23944268--23944537 Score: 366
Period size: 82 Copynumber: 3.3 Consensus size: 81
23944258 GTAAAGTGAC
* * *
23944268 CGAAATACCCTCGATGGGTAAAATTACTGAAATACTCTCGATGGGTAAAATTATTGAAATACCCT
1 CGAAATACCCTCGAAGGGTAAAATTACTGAAATACCCTCGACGGGTAAAATTATTGAAATACCCT
*
23944333 TATAGGGTAAAGTTAAT
66 TATAGGGTAAAATT-AT
* * *
23944350 CGAAATACCCTTGAAGGGTAAAATTACCGAAATACCCTCGACGGGTAAAATTATCGAAATACCCT
1 CGAAATACCCTCGAAGGGTAAAATTACTGAAATACCCTCGACGGGTAAAATTATTGAAATACCCT
* *
23944415 TATAGGATAAAATTAC
66 TATAGGGTAAAATTAT
* * * * *
23944431 CGAAATACCCTCAAAAGGTAAAATTA-TCAAATACCCTTGACAGGTAAAATTATTGAAATACCCT
1 CGAAATACCCTCGAAGGGTAAAATTACTGAAATACCCTCGACGGGTAAAATTATTGAAATACCCT
23944495 TGATA-GGTAAAATTAT
66 T-ATAGGGTAAAATTAT
23944511 CGAAATACCCTC-ATAGGGTAAAATTAC
1 CGAAATACCCTCGA-AGGGTAAAATTAC
23944538 CAACATACCC
Statistics
Matches: 165, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 66 0.40
81 27 0.16
82 71 0.43
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (81 bp):
CGAAATACCCTCGAAGGGTAAAATTACTGAAATACCCTCGACGGGTAAAATTATTGAAATACCCT
TATAGGGTAAAATTAT
Found at i:23944509 original size:107 final size:108
Alignment explanation
Indices: 23944257--23944588 Score: 379
Period size: 107 Copynumber: 3.1 Consensus size: 108
23944247 TGTCAATTGT
* * *
23944257 GGTAAAGTGACCGAAATACCCTCGATGGGTAAAATTA-CTGAAATACTCTCGAT-GGGTAAAATT
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATC-GAAATACCCTC-ATAGGGTAAAATT
** * * * *
23944320 ATTGAAATACCCTTATAGGGTAAAGTTAATCGAAATACCCTTGAAG
64 ACCGAAATACCCTCAAAGGGTAAAATT-ATCAAAATACCCTTGAAG
* * *
23944366 GGTAAAATTACCGAAATACCCTCGACGGGTAAAATTATCGAAATACCCTTATAGGATAAAATTAC
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTAC
*
23944431 CGAAATACCCTCAAAAGGTAAAATTATC-AAATACCCTTGACA-
66 CGAAATACCCTCAAAGGGTAAAATTATCAAAATACCCTTGA-AG
** * *
23944473 GGTAAAATTATTGAAATACCCTTGATAGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTAC
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTAC
* ***
23944538 C-AACATACCC-CTAAAGGGTAAAATTACCAAAATACCCCCAAAG
66 CGAA-ATACCCTC-AAAGGGTAAAATTATCAAAATACCCTTGAAG
23944581 GGTAAAAT
1 GGTAAAAT
23944589 GACTAAAATA
Statistics
Matches: 192, Mismatches: 24, Indels: 15
0.83 0.10 0.06
Matches are distributed among these distances:
106 3 0.02
107 92 0.48
108 23 0.12
109 73 0.38
110 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (108 bp):
GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTAC
CGAAATACCCTCAAAGGGTAAAATTATCAAAATACCCTTGAAG
Found at i:23944604 original size:54 final size:54
Alignment explanation
Indices: 23944499--23944615 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 54
23944489 TACCCTTGAT
* * * * * * *
23944499 AGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTACCAACATACCCCTA-A
1 AGGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACCAAAATAACCCTATA
*
23944552 AGGGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACTAAAATAACCCTATA
1 A-GGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACCAAAATAACCCTATA
23944607 AGGTAAAAT
1 AGGTAAAAT
23944616 GACTTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 51 0.94
55 2 0.04
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.21
Consensus pattern (54 bp):
AGGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACCAAAATAACCCTATA
Found at i:23944619 original size:27 final size:27
Alignment explanation
Indices: 23944525--23944618 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
23944515 ATACCCTCAT
* * *
23944525 AGGGTAAAATTACCAACATACCCCTAA
1 AGGGTAAAATGACCAAAATAACCCTAA
* * *
23944552 AGGGTAAAATTACCAAAATACCCCCAA
1 AGGGTAAAATGACCAAAATAACCCTAA
*
23944579 AGGGTAAAATGACTAAAATAACCCTATA
1 AGGGTAAAATGACCAAAATAACCCTA-A
23944607 A-GGTAAAATGAC
1 AGGGTAAAATGAC
23944619 TTGTTCTATG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.97
28 2 0.03
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (27 bp):
AGGGTAAAATGACCAAAATAACCCTAA
Found at i:23944789 original size:26 final size:26
Alignment explanation
Indices: 23944754--23944855 Score: 125
Period size: 26 Copynumber: 3.9 Consensus size: 26
23944744 TTACCACAAA
*
23944754 TACTGTTACTAGCAGCTTTACTGCGT
1 TACTGATACTAGCAGCTTTACTGCGT
* *
23944780 TACTGATACTGGCAGCTCTACTGCGT
1 TACTGATACTAGCAGCTTTACTGCGT
* * *
23944806 TACTGTTACTAGCAACTTTGCTGCGT
1 TACTGATACTAGCAGCTTTACTGCGT
*
23944832 TACT-ATTACTGGCAGCTTTACTGC
1 TACTGA-TACTAGCAGCTTTACTGC
23944856 AATATTGGTG
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
TACTGATACTAGCAGCTTTACTGCGT
Found at i:23944816 original size:52 final size:52
Alignment explanation
Indices: 23944754--23944855 Score: 161
Period size: 52 Copynumber: 2.0 Consensus size: 52
23944744 TTACCACAAA
*
23944754 TACTGTTACTAGCAGCTTTACTGCGTTACTGA-TACTGGCAGCTCTACTGCGT
1 TACTGTTACTAGCAACTTTACTGCGTTACT-ATTACTGGCAGCTCTACTGCGT
* *
23944806 TACTGTTACTAGCAACTTTGCTGCGTTACTATTACTGGCAGCTTTACTGC
1 TACTGTTACTAGCAACTTTACTGCGTTACTATTACTGGCAGCTCTACTGC
23944856 AATATTGGTG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (52 bp):
TACTGTTACTAGCAACTTTACTGCGTTACTATTACTGGCAGCTCTACTGCGT
Found at i:23950219 original size:20 final size:21
Alignment explanation
Indices: 23950194--23950234 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
23950184 TTACCGAATT
23950194 CTCTCTTCCCATC-TCTTCTC
1 CTCTCTTCCCATCTTCTTCTC
**
23950214 CTCTCTTTTCATCTTCTTCTC
1 CTCTCTTCCCATCTTCTTCTC
23950235 TTTTTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.05, C:0.44, G:0.00, T:0.51
Consensus pattern (21 bp):
CTCTCTTCCCATCTTCTTCTC
Found at i:23950950 original size:27 final size:27
Alignment explanation
Indices: 23950907--23951237 Score: 249
Period size: 27 Copynumber: 12.3 Consensus size: 27
23950897 TGCAAATTAT
*
23950907 GGTAAAATGATCGAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23950934 GGTAAAATTATCAAAATACCCTCTAAG
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23950961 GGT-AAATTACCGAAGTACCCTCAATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
23950987 GGTAAAATTATTGAAATACCCTC-ATAA
1 GGTAAAATTATCGAAATACCCTCGAT-G
* * * *
23951014 GGTAAAGTTATCGAGATACCCTTGAAG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
23951041 GGTAGAATTGTCGAAATACCCTC-ATGG
1 GGTAAAATTATCGAAATACCCTCGAT-G
* * * **
23951068 GGTAAAATTACCGAAATACCTTTGAAA
1 GGTAAAATTATCGAAATACCCTCGATG
* * **
23951095 CGTAAAATTATCGAAATACCCTTGACA
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23951122 AGTAAAATTACCAAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
23951149 GGTAAAATTATTGAAATACCC-CTATAG
1 GGTAAAATTATCGAAATACCCTCGAT-G
* * *
23951176 GGTAAAATT-GCTGAAATACCCTTGAAG
1 GGTAAAATTATC-GAAATACCCTCGATG
* * * * * *
23951203 GGTAAAATGACCAAAATACCCCCAAAG
1 GGTAAAATTATCGAAATACCCTCGATG
23951230 GGTAAAAT
1 GGTAAAAT
23951238 GACTAAAATA
Statistics
Matches: 237, Mismatches: 58, Indels: 18
0.76 0.19 0.06
Matches are distributed among these distances:
26 27 0.11
27 206 0.87
28 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (27 bp):
GGTAAAATTATCGAAATACCCTCGATG
Found at i:23950966 original size:54 final size:55
Alignment explanation
Indices: 23950907--23951237 Score: 302
Period size: 54 Copynumber: 6.1 Consensus size: 55
23950897 TGCAAATTAT
* * * *
23950907 GGTAAAATGATCGAAATACCCTCGATGGGTAAAATTATCAAAATACCCTCTA-AG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * *
23950961 GGT-AAATTACCGAAGTACCCTC-AATGGGTAAAATTATTGAAATACCCTC-ATAA
1 GGTAAAATTACCGAAATACCCTCGAA-GGGTAAAATTATCGAAATACCCTCTATAG
* * * * * * *
23951014 GGTAAAGTTATCGAGATACCCTTGAAGGGTAGAATTGTCGAAATACCCTC-ATGG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * ** *
23951068 GGTAAAATTACCGAAATACCTTTGAAACGTAAAATTATCGAAATACCCT-TGACA-
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCT-ATAG
* * * *
23951122 AGTAAAATTACCAAAATACCCTCGATGGGTAAAATTATTGAAATACCC-CTATAG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * * * * * * *
23951176 GGTAAAATTGCTGAAATACCCTTGAAGGGTAAAATGACCAAAATACCC-CCAAAG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
23951230 GGTAAAAT
1 GGTAAAAT
23951238 GACTAAAATA
Statistics
Matches: 221, Mismatches: 48, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
52 2 0.01
53 44 0.20
54 172 0.78
55 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (55 bp):
GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
Found at i:23951100 original size:81 final size:80
Alignment explanation
Indices: 23950907--23951264 Score: 300
Period size: 81 Copynumber: 4.4 Consensus size: 80
23950897 TGCAAATTAT
* * ** *
23950907 GGTAAAATGATCGAAATACCCTCGAT-GGGTAAAATTATCAAAATACCCTCT-AAGGGTAAATTA
1 GGTAAAATTATTGAAATACCCTC-ATAACGTAAAATTATCGAAATACCCT-TGAAGGGTAAATTA
*
23950970 CCGAAGTACCCTCAATG
64 CCGAAATACCCTCAATG
* * * **
23950987 GGTAAAATTATTGAAATACCCTCATAAGGTAAAGTTATCGAGATACCCTTGAAGGGTAGAATTGT
1 GGTAAAATTATTGAAATACCCTCATAACGTAAAATTATCGAAATACCCTTGAAGGGTA-AATTAC
23951052 CGAAATACCCTC-ATGG
65 CGAAATACCCTCAAT-G
** * * *
23951068 GGTAAAATTACCGAAATACCTTTGA-AACGTAAAATTATCGAAATACCCTTGACA-AGTAAAATT
1 GGTAAAATTATTGAAATACC-CTCATAACGTAAAATTATCGAAATACCCTTGA-AGGGT-AAATT
* *
23951131 ACCAAAATACCCTCGATG
63 ACCGAAATACCCTCAATG
** * *
23951149 GGTAAAATTATTGAAATACCC-CTATAGGGTAAAATT-GCTGAAATACCCTTGAAGGGTAAAATG
1 GGTAAAATTATTGAAATACCCTC-ATAACGTAAAATTATC-GAAATACCCTTGAAGGGT-AAATT
* * *
23951212 ACCAAAATACCCCCAAAG
63 ACCGAAATACCCTCAATG
* * * *
23951230 GGTAAAATGACTAAAATAACCC-CATAAGGTAAAAT
1 GGTAAAATTATTGAAAT-ACCCTCATAACGTAAAAT
23951265 GACTGTTGTA
Statistics
Matches: 229, Mismatches: 36, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
79 3 0.01
80 52 0.23
81 163 0.71
82 11 0.05
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (80 bp):
GGTAAAATTATTGAAATACCCTCATAACGTAAAATTATCGAAATACCCTTGAAGGGTAAATTACC
GAAATACCCTCAATG
Found at i:23951238 original size:27 final size:27
Alignment explanation
Indices: 23951123--23951268 Score: 116
Period size: 27 Copynumber: 5.4 Consensus size: 27
23951113 CCCTTGACAA
* * * * *
23951123 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATGACTAAAATACCCCCAAAGG
* * * * *
23951150 GTAAAATTATTGAAATACCCCTATAGG
1 GTAAAATGACTAAAATACCCCCAAAGG
* ***
23951177 GTAAAATTG-CTGAAATACCCTTGAAGG
1 GTAAAA-TGACTAAAATACCCCCAAAGG
*
23951204 GTAAAATGACCAAAATACCCCCAAAGG
1 GTAAAATGACTAAAATACCCCCAAAGG
*
23951231 GTAAAATGACTAAAATAACCCCATAA-G
1 GTAAAATGACTAAAATACCCCCA-AAGG
23951258 GTAAAATGACT
1 GTAAAATGACT
23951269 GTTGTACCCC
Statistics
Matches: 96, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.02
27 91 0.95
28 3 0.03
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (27 bp):
GTAAAATGACTAAAATACCCCCAAAGG
Found at i:23951493 original size:26 final size:26
Alignment explanation
Indices: 23951451--23951542 Score: 96
Period size: 26 Copynumber: 3.5 Consensus size: 26
23951441 ACTGCTATTA
** *
23951451 GCAGCTTTGCTTTGTTATTGATACTG
1 GCAGCTTTGCTGCGTTACTGATACTG
* * *
23951477 GCAGCTTTGTTGCGTTACTGTTACTA
1 GCAGCTTTGCTGCGTTACTGATACTG
*
23951503 GTAGCTTTGCTGCGTTACT-ATTACTG
1 GCAGCTTTGCTGCGTTACTGA-TACTG
*
23951529 GTAGCTTTGCTGCG
1 GCAGCTTTGCTGCG
23951543 ATATTGGTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.42
Consensus pattern (26 bp):
GCAGCTTTGCTGCGTTACTGATACTG
Found at i:23951702 original size:28 final size:29
Alignment explanation
Indices: 23951659--23951731 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 29
23951649 GATTATTATT
* *
23951659 TTGGGCTAAGGTCCAC-ATTGTTACTGTA
1 TTGGGCTAAGGCCCACAATTGCTACTGTA
23951687 TTGGGCTAAGGCCCACATATTGCTACTGTA
1 TTGGGCTAAGGCCCACA-ATTGCTACTGTA
* *
23951717 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
23951732 AACTGATTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 15 0.38
30 24 0.62
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACAATTGCTACTGTA
Found at i:23953613 original size:136 final size:136
Alignment explanation
Indices: 23953369--23953613 Score: 454
Period size: 136 Copynumber: 1.8 Consensus size: 136
23953359 GAATTGAACT
23953369 GTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAGTGA
1 GTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAGTGA
*
23953434 TTATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTTTTT
66 TAATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTTTTT
23953499 ATATAG
131 ATATAG
*
23953505 GTTTAGAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAGTGA
1 GTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAGTGA
* *
23953570 TAATGAACTTAGCTAATATGTTTGTAGAATGTATATGAGGGAAA
66 TAATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAA
23953614 TTGAGTAATG
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 105 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (136 bp):
GTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAGTGA
TAATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTTTTT
ATATAG
Found at i:23957202 original size:36 final size:35
Alignment explanation
Indices: 23957144--23957222 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
23957134 AAGCCCTCCA
* * *
23957144 AAACACACCAATGCTTATAAGAGCTAGTCCAACCG
1 AAACACACAAATGCTTAAAAGAGCTAATCCAACCG
**
23957179 AAACACACAAGATGCTTAAAAGAGCTAATCCCTCCG
1 AAACACACAA-ATGCTTAAAAGAGCTAATCCAACCG
23957215 AAACACAC
1 AAACACAC
23957223 CAAACAGAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
35 9 0.24
36 29 0.76
ACGTcount: A:0.43, C:0.29, G:0.13, T:0.15
Consensus pattern (35 bp):
AAACACACAAATGCTTAAAAGAGCTAATCCAACCG
Found at i:23967133 original size:17 final size:17
Alignment explanation
Indices: 23967107--23967144 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
23967097 GTAATTCGCG
23967107 TAAATGATCAGA-TCACA
1 TAAATGATCA-ATTCACA
*
23967124 TAAATTATCAATTCACA
1 TAAATGATCAATTCACA
23967141 TAAA
1 TAAA
23967145 ATATATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (17 bp):
TAAATGATCAATTCACA
Found at i:23975079 original size:45 final size:45
Alignment explanation
Indices: 23975015--23975133 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 45
23975005 TTGGCTTAAA
* * * * *
23975015 GGAAATGATTAAGACCATAGTTAAAAGATACTATGACACTATATC
1 GGAAATAAATAAGACCATAGTTAAAAGACACTATGACACCATACC
* *
23975060 GGAAATAAATAAGACCATAGTTGAAAGACACTATGGCACCATACC
1 GGAAATAAATAAGACCATAGTTAAAAGACACTATGACACCATACC
* * * * *
23975105 AGAAACAAGTAAGACCATAGCTGAAAGAC
1 GGAAATAAATAAGACCATAGTTAAAAGAC
23975134 GTTATGGCAT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19
Consensus pattern (45 bp):
GGAAATAAATAAGACCATAGTTAAAAGACACTATGACACCATACC
Found at i:23975209 original size:45 final size:45
Alignment explanation
Indices: 23975118--23975224 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
23975108 AACAAGTAAG
* * * **
23975118 ACCATAGCTGAAAGACGTTATGGCATCATAATTCTAATGAGTAAA
1 ACCATAGCTGAAAGACGTCATGGCATCATAATTCAAACGAACAAA
*
23975163 ACTATAGCTGAAAGACGTCATGGCATCATGAA-TCAAACGAACAAA
1 ACCATAGCTGAAAGACGTCATGGCATCAT-AATTCAAACGAACAAA
*
23975208 ACCATAGTTGAAAGACG
1 ACCATAGCTGAAAGACG
23975225 CTATGGAAAC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 51 0.96
46 2 0.04
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (45 bp):
ACCATAGCTGAAAGACGTCATGGCATCATAATTCAAACGAACAAA
Found at i:23977550 original size:18 final size:18
Alignment explanation
Indices: 23977527--23977569 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
23977517 TTTCAGGTAA
23977527 AACCGAATT-AATTCGGTT
1 AACCG-ATTGAATTCGGTT
23977545 AACCGATTGAATTCGGTT
1 AACCGATTGAATTCGGTT
*
23977563 AATCGAT
1 AACCGAT
23977570 CGGTTAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (18 bp):
AACCGATTGAATTCGGTT
Found at i:23978963 original size:6 final size:6
Alignment explanation
Indices: 23978952--23978978 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23978942 CAATTCAATA
23978952 AAAATT AAAATT AAAATT AAAATT AAA
1 AAAATT AAAATT AAAATT AAAATT AAA
23978979 GGTCCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:23984011 original size:16 final size:16
Alignment explanation
Indices: 23983990--23984044 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
23983980 GTTTGGTTCA
23983990 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
23984006 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
23984022 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
23984038 CTGTAAT
1 CTGTAAT
23984045 AGTAATTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:23984117 original size:44 final size:44
Alignment explanation
Indices: 23984026--23984152 Score: 211
Period size: 44 Copynumber: 2.9 Consensus size: 44
23984016 ATAGAGCTGT
*
23984026 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTGAATGG
*
23984071 AATGAAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
23984115 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTT
1 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTT
23984153 AGCATGAGAA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
43 1 0.01
44 56 0.72
45 21 0.27
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
Found at i:23984346 original size:17 final size:18
Alignment explanation
Indices: 23984300--23984335 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23984290 TTATTATTAA
23984300 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
23984318 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
23984336 TTTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:23984370 original size:55 final size:55
Alignment explanation
Indices: 23984254--23984370 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
23984244 GATTATTAAT
* * *
23984254 ATAAATAATAAATAATTTAATCATATTTTAACATAGTTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAAAATTTTAACATAATTATTATTAAATATAATTTA
* * * *
23984310 ATAAAAATATATAATTTAATAAAAATTTTAATATAATTATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAAT-AAAATTTTAACATAATTATTATTAAATATAATTTA
*
23984365 CTAAAA
1 ATAAAA
23984371 TCATTGTACA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
55 25 0.48
56 27 0.52
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAAAATTTTAACATAATTATTATTAAATATAATTTA
Found at i:23984420 original size:18 final size:18
Alignment explanation
Indices: 23984397--23984443 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
23984387 AATATGCCCG
*
23984397 GGCCCAAACTAATAAATA
1 GGCCCAAACTAATAAACA
* *
23984415 GGCCCAAACCATTAAACA
1 GGCCCAAACTAATAAACA
*
23984433 AGCCCAAACTA
1 GGCCCAAACTA
23984444 TCTCAAGCCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.30, G:0.11, T:0.13
Consensus pattern (18 bp):
GGCCCAAACTAATAAACA
Found at i:23984854 original size:16 final size:16
Alignment explanation
Indices: 23984823--23984855 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23984813 TTATTCTTAG
23984823 TTTCGTTTTGTAATTT
1 TTTCGTTTTGTAATTT
23984839 TTTCTGTTTTGT-ATTT
1 TTTC-GTTTTGTAATTT
23984855 T
1 T
23984856 ATTTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.09, C:0.06, G:0.12, T:0.73
Consensus pattern (16 bp):
TTTCGTTTTGTAATTT
Found at i:23985446 original size:3 final size:3
Alignment explanation
Indices: 23985440--23985480 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
23985430 AGTTTTTTTA
23985440 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23985481 CCCTTACTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:23987647 original size:13 final size:13
Alignment explanation
Indices: 23987629--23987654 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23987619 AAAGAGATTT
23987629 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
23987642 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
23987655 AAATTGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:23987724 original size:19 final size:20
Alignment explanation
Indices: 23987687--23987726 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23987677 TCTTTTCGCA
* *
23987687 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
23987707 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
23987726 T
1 T
23987727 AGACACCGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:23990534 original size:14 final size:13
Alignment explanation
Indices: 23990515--23990555 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
23990505 AGTGATGTGA
23990515 AAAATGAAAAGATG
1 AAAATGAAAA-ATG
23990529 AAAATGAAAAATG
1 AAAATGAAAAATG
*
23990542 AAAAGGTAAAAATG
1 AAAATG-AAAAATG
23990556 GAAAGGCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 8 0.32
14 17 0.68
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:23990535 original size:6 final size:7
Alignment explanation
Indices: 23990512--23990545 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
23990502 AGAAGTGATG
23990512 TGAAAAA
1 TGAAAAA
23990519 TGAAAAGA
1 TGAAAA-A
23990527 TG-AAAA
1 TGAAAAA
23990533 TGAAAAA
1 TGAAAAA
23990540 TGAAAA
1 TGAAAA
23990546 GGTAAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 3 0.12
7 19 0.76
8 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:23990538 original size:21 final size:21
Alignment explanation
Indices: 23990512--23990555 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
23990502 AGAAGTGATG
*
23990512 TGAAAAATGAAAAGATGAAAA
1 TGAAAAATGAAAAGATAAAAA
*
23990533 TGAAAAATGAAAAGGTAAAAA
1 TGAAAAATGAAAAGATAAAAA
23990554 TG
1 TG
23990556 GAAAGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (21 bp):
TGAAAAATGAAAAGATAAAAA
Found at i:23991861 original size:45 final size:45
Alignment explanation
Indices: 23991803--23992488 Score: 482
Period size: 45 Copynumber: 15.3 Consensus size: 45
23991793 GGAGTAGTAA
*
23991803 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
* * *** * * *
23991848 CAGATATTATCTTCATGTACTGG-CGTGAAATAGATCAAAGATAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
* * *
23991892 CAGATCTTGCCTTCCCATACTGGTGACGAAACAGATCGAAGAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
* * *
23991937 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
* * * *
23991982 CAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
*** *** * *
23992027 CAGATCTTGTCTTCATGTACTGG-CATGAAGTAGATCAAAGATAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
*
23992071 CAGATCTTGTCTT-CCATACTGGTGGCGAAACAGATCGAAGAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
*** * * * * *
23992115 CAGATCTTGTCTTCATGTACTAG-CGTGAAGTAGATCAAAGATAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
* *
23992159 CAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATAGAAGAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
*** * * * * * *
23992204 CAGATCTTGTCTTCATGTACTGG-CGTGAAGTTGATCAAAGGTAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAA-GAAAG
* * *
23992248 CAGATCTTATCTTTCCATACTGGTGGCGAAGTAGATCGAAAGAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCG-AAGAAAG
* *** *** * *
23992294 CAAATCTTGTCTTCATGTACTGG-CATGAAGTAGATCAAAGATAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
* * **
23992338 CAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAG
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAA-G--AAAG
* * * *** * * * *
23992386 TAAAGCTTGTCTTCATGTATTGGT-GTGAAGTAGATCAAAGACAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
* * * *
23992430 CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAGAA-
1 CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGA-AAG
23992475 CAGATCTTGTCTTC
1 CAGATCTTGTCTTC
23992489 ATGTATTGGC
Statistics
Matches: 491, Mismatches: 128, Indels: 44
0.74 0.19 0.07
Matches are distributed among these distances:
43 8 0.02
44 186 0.38
45 244 0.50
46 21 0.04
47 15 0.03
48 17 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (45 bp):
CAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCGAAGAAAG
Found at i:23992533 original size:89 final size:89
Alignment explanation
Indices: 23991800--23992526 Score: 981
Period size: 89 Copynumber: 8.1 Consensus size: 89
23991790 AGTGGAGTAG
* * *
23991800 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATATTATCTTCATG
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
*
23991865 TACTGGCGTGAAATAGATCAAAGA
66 TACTGGCGTGAAGTAGATCAAAGA
* * * ***
23991889 TAACAGATCTTGCCTTCCCATACTGGTGACGAAACAGATCGAAGAAAGCAGATCTTGTCTTCCCA
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
* *
23991954 TACTGGTGGCGAAGTAGATCAAAGA
66 TACTGG-CGTGAAGTAGATCAAAGA
* * * * *
23991979 TAGCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATG
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
*
23992044 TACTGGCATGAAGTAGATCAAAGA
66 TACTGGCGTGAAGTAGATCAAAGA
*
23992068 TAACAGATCTTGTCTT-CCATACTGGTGGCGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATG
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
*
23992132 TACTAGCGTGAAGTAGATCAAAGA
66 TACTGGCGTGAAGTAGATCAAAGA
* *
23992156 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAACAGATAGAAGAAAGCAGATCTTGTCTTCATG
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
* *
23992221 TACTGGCGTGAAGTTGATCAAAGG
66 TACTGGCGTGAAGTAGATCAAAGA
* * * *
23992245 TAACAGATCTTATCTTTCCATACTGGTGGCGAAGTAGATCGAAAGAAAGCAAATCTTGTCTTCAT
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCG-AAGAAAGCAGATCTTGTCTTCAT
*
23992310 GTACTGGCATGAAGTAGATCAAAGA
65 GTACTGGCGTGAAGTAGATCAAAGA
* * * * *
23992335 TAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAGTAAAGCTTGTCTTC
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAA-G--AAAGCAGATCTTGTCTTC
* *
23992400 ATGTATTGGTGTGAAGTAGATCAAAGA
63 ATGTACTGGCGTGAAGTAGATCAAAGA
* * * * *
23992427 CAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAGAA-CAGATCTTGTCTTCAT
1 TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGA-AAGCAGATCTTGTCTTCAT
* * *
23992491 GTATTGGCGTAAAGTAGATCGAAGA
65 GTACTGGCGTGAAGTAGATCAAAGA
*
23992516 TTACAGATCTT
1 TAACAGATCTT
23992527 ATCTCCCTAA
Statistics
Matches: 563, Mismatches: 68, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
88 82 0.15
89 244 0.43
90 158 0.28
91 1 0.00
92 78 0.14
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (89 bp):
TAACAGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATG
TACTGGCGTGAAGTAGATCAAAGA
Found at i:23992664 original size:132 final size:132
Alignment explanation
Indices: 23992512--23992930 Score: 727
Period size: 132 Copynumber: 3.2 Consensus size: 132
23992502 AAGTAGATCG
*
23992512 AAGATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAA-GATGGTAGATTTTACCTC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGGATGGTAGATTTTACCTC
*
23992576 CCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGA
65 CCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGA
23992641 TTA
130 TTA
*
23992644 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGCAGATTTTACCTCC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGTAGATTTTACCTCC
*
23992709 CTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
66 CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
*
23992774 TG
131 TA
*
23992776 AAGATTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAGGAT-GTCAGATTTTACCTC
1 AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGT-AGATTTTACCTC
23992840 CCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGA
65 CCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGA
*
23992905 TCA
130 TTA
23992908 AAGATTACAGAT-TCTATCTCCCT
1 AAGATTACAGATCT-TATCTCCCT
23992931 GGGCAGCAGT
Statistics
Matches: 274, Mismatches: 10, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
131 4 0.01
132 270 0.99
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (132 bp):
AAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGTAGATTTTACCTCC
CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGAT
TA
Found at i:23992924 original size:176 final size:176
Alignment explanation
Indices: 23992742--23993106 Score: 660
Period size: 176 Copynumber: 2.1 Consensus size: 176
23992732 GAAGCCAATA
*
23992742 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
* *
23992807 ATGGAGCAGATCAAGGATGTCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 ATGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
23992872 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
23992918 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992983 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 ATGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
**
23993048 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
23993094 ATAT-TATCTCCCT
1 AT-TCTATCTCCCT
23993107 AAGCAGTAGT
Statistics
Matches: 182, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
176 181 0.99
177 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (176 bp):
ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
ATGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
Found at i:23993019 original size:264 final size:263
Alignment explanation
Indices: 23992505--23992999 Score: 685
Period size: 264 Copynumber: 1.9 Consensus size: 263
23992495 TGGCGTAAAG
*
23992505 TAGATCGAAGATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGATGGTAGATTT
1 TAGATCGAAGATTACAGATCTTATCTCCCTAAACAGTAATGGAGCAGATCGAAGATGGTAGATTT
23992570 TACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
66 TACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
* * * * *
23992635 AATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGCAGAT
131 AATAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGAT
* * * ** * * *
23992700 TTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGGGCAGCAGT
196 CTTACCTCCCTAAGGTTA-AGTGGAGCACATCAAAGACAACAATTCTACCTCCCTGGGCAGCAGT
23992765 GGAA
260 GGAA
* *
23992769 TAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATC-AAGGAT-GTCAGAT
1 TAGATCGAAGATTACAGATCTTATCTCCCTAAACAGTAATGGAGCAGATCGAA-GATGGT-AGAT
*
23992832 TTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGT
64 TTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGT
** * * *
23992897 GGAATAGATCAAAGATTACAGAT-TCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACA
129 GGAATAGATCAAAGATTACAGATCT-TATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACA
* *
23992961 GATCTTATCTCCCTAAGCAG-T-AGTGGAGCAGATCAAAGA
193 GATCTTACCTCCCTAAG--GTTAAGTGGAGCACATCAAAGA
23993000 TGGCAGATTT
Statistics
Matches: 204, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
263 18 0.09
264 184 0.90
265 1 0.00
266 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (263 bp):
TAGATCGAAGATTACAGATCTTATCTCCCTAAACAGTAATGGAGCAGATCGAAGATGGTAGATTT
TACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
AATAGATCAAAGATTACAGATCTTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGAT
CTTACCTCCCTAAGGTTAAGTGGAGCACATCAAAGACAACAATTCTACCTCCCTGGGCAGCAGTG
GAA
Found at i:23993032 original size:308 final size:308
Alignment explanation
Indices: 23992610--23993238 Score: 1179
Period size: 308 Copynumber: 2.0 Consensus size: 308
23992600 GAAGCCAGTA
23992610 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992675 GTGGAGCAGATCAAGGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
66 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
*
23992740 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
*
23992805 TAATGGAGCAGATCAAGGATGTCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
196 TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
23992870 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
261 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
23992918 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992983 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
23993048 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
*
23993113 TAGTGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
196 TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
**
23993178 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAG
261 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
23993226 A-TCTTATCTCCCT
1 ATTC-TATCTCCCT
23993239 AAGCAGTAGT
Statistics
Matches: 313, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
307 2 0.01
308 311 0.99
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (308 bp):
ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
Found at i:23993195 original size:176 final size:175
Alignment explanation
Indices: 23992742--23993150 Score: 516
Period size: 176 Copynumber: 2.3 Consensus size: 175
23992732 GAAGCCAATA
** * ** * *
23992742 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGATCTTACCTCCCTAAG-AGTA
* * * * *
23992807 ATGGAGCAGATCAAGGA-TGTCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
65 GTGGAGCACATCAAAGACAG-CAGATTCTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
23992871 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
129 GTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
** * * * *
23992918 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGATCTTACCTCCCTAAG-AGTA
* ** *
23992983 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
65 GTGGAGCACATCAAAGACAGCAGATTCTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
**
23993048 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAG
130 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
* * * *
23993094 ATAT-TATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGACAGATTTTACCTCCCT
1 AT-TCTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGATCTTACCTCCCT
23993151 GAGGTTACAG
Statistics
Matches: 215, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
176 213 0.99
177 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (175 bp):
ATTCTATCTCCCTAAGCAGCAGTGGAACAGATCAAAGATGACAGATCTTACCTCCCTAAGAGTAG
TGGAGCACATCAAAGACAGCAGATTCTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
AATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
Found at i:23993276 original size:308 final size:308
Alignment explanation
Indices: 23992610--23993309 Score: 1127
Period size: 308 Copynumber: 2.3 Consensus size: 308
23992600 GAAGCCAGTA
** * *
23992610 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTAAGCAGCAGTGGAACAGACTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992675 GTGGAGCAGATCAAGGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
66 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
*
23992740 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
*
23992805 TAATGGAGCAGATCAAGGATGTCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
196 TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
23992870 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
261 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
** * *
23992918 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTAAGCAGCAGTGGAACAGACTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992983 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
23993048 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
131 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
*
23993113 TAGTGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
196 TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
**
23993178 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAG
261 AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
* ** * *
23993226 A-TCTTATCTCCCTAAGCAGTAGTGGGGCAGACTGAAGATGT-C-GAATCTTATCTCCCTGAAGT
1 ATTC-TATCTCCCTAAGCAGCAGTGGAACAGACTAAAGAT-TACAG-ATCTTATCTCCCT-AAGC
* * * *
23993288 TGCAGTGGAGCAGGTTAAAGAT
62 AGTAGTGGAGCAGATCAAAGAT
23993310 AATAATCCTA
Statistics
Matches: 368, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
307 3 0.01
308 343 0.93
309 22 0.06
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (308 bp):
ATTCTATCTCCCTAAGCAGCAGTGGAACAGACTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAA
TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAG
TAATGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
AGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATTACAG
Found at i:23993327 original size:132 final size:131
Alignment explanation
Indices: 23992918--23993297 Score: 618
Period size: 132 Copynumber: 2.9 Consensus size: 131
23992908 AAGATTACAG
*
23992918 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23992983 GTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 GTGGAGCAGAT-AAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
23993048 TA
130 TA
*
23993050 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
*
23993115 GTGGAGCAGATCAAGGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
66 GTGGAGCAGAT-AAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
23993180 TA
130 TA
23993182 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
1 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
* * * * * * *
23993247 GTGGGGCAGACTGAAGATGTC-GAATCTTATCTCCCTGAAGTTGCAGTGGAG
66 GTGGAGCAGA-TAAAGATGACAG-ATTTTACCTCCCTGAGGTTACAGTGGAG
23993298 CAGGTTAAAG
Statistics
Matches: 233, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
131 1 0.00
132 231 0.99
133 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (131 bp):
ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
A
Found at i:23993366 original size:44 final size:42
Alignment explanation
Indices: 23993269--23993517 Score: 144
Period size: 44 Copynumber: 5.8 Consensus size: 42
23993259 GAAGATGTCG
* * ***
23993269 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGATAAT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAA-A-CCC
*
23993313 AATCCTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCAC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACC-C
* ** *** *
23993356 AGATCTTATCTCTCTGAAGTTGCAG-AG-GGGGA-TCGCATCC
1 A-ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCC
* * * ** *
23993396 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAGAAGAAACC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TTAA-AACCC
* * * * * **
23993440 AATCCTATCTCCTTGAAATTGCAATGGAGTGGATTAAAACCGC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACC-C
* * *
23993483 ATATCTCATCTCTCTGAAGTTGCAGCAGAGCAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT
23993518 CGCATCAGAT
Statistics
Matches: 150, Mismatches: 46, Indels: 18
0.70 0.21 0.08
Matches are distributed among these distances:
39 20 0.13
40 3 0.02
41 6 0.04
42 6 0.04
43 8 0.05
44 107 0.71
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (42 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAACCC
Found at i:23993444 original size:127 final size:127
Alignment explanation
Indices: 23993271--23993507 Score: 325
Period size: 127 Copynumber: 1.9 Consensus size: 127
23993261 AGATGTCGAA
* ** * *
23993271 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGATAATAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGGACAAAGATAACAATCCTATCTCCCTGAAATTGCA
* *
23993336 GTAGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGAGGGGGATCGCATCCAG
66 ATAGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGAGGGGGATCGCATCCAG
*
23993398 TCTTATCTCCCTAAAGTTGCAGTGGAGCA-GACAGAAGA-AACCAATCCTATCTCCTTGAAATTG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGGACA-AAGATAA-CAATCCTATCTCCCTGAAATTG
* ** * *
23993461 CAATGGAGTGGATTAAAACCGCATATCTCATCTCTCTGAAGTTGCAG
64 CAATAGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAG
23993508 CAGAGCAGAT
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
126 4 0.04
127 91 0.96
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (127 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGGACAAAGATAACAATCCTATCTCCCTGAAATTGCA
ATAGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTGCAGAGGGGGATCGCATCCAG
Found at i:23994907 original size:3 final size:3
Alignment explanation
Indices: 23994881--23994986 Score: 107
Period size: 3 Copynumber: 36.0 Consensus size: 3
23994871 AATCCTTAAT
* *
23994881 TTA TTA TT- TTA GTT- TTT TTA -TA TTA TTAA TTA -TG TTA -TA TTTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA
23994924 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
23994972 -TA GTTA TTA CTA TTA
1 TTA -TTA TTA TTA TTA
23994987 CCCTTACTAT
Statistics
Matches: 88, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
2 11 0.12
3 67 0.76
4 10 0.11
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:23996187 original size:21 final size:20
Alignment explanation
Indices: 23996162--23996223 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
23996152 TTCGACAATC
23996162 ATAATATATAATACTATAAAA
1 ATAATATATAAT-CTATAAAA
**
23996183 ATAATATATAATCTACT--TT
1 ATAATATATAATCTA-TAAAA
23996202 ATAATATATAATGCTATAAAA
1 ATAATATATAAT-CTATAAAA
23996223 A
1 A
23996224 ACTTGAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 13 0.39
20 6 0.18
21 14 0.42
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAATATATAATCTATAAAA
Found at i:23999434 original size:3 final size:3
Alignment explanation
Indices: 23999426--23999463 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23999416 TTTATCCAGC
23999426 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23999464 TTCAAATCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:24000950 original size:33 final size:33
Alignment explanation
Indices: 24000893--24001030 Score: 132
Period size: 33 Copynumber: 4.2 Consensus size: 33
24000883 ACTTACCCTA
* *
24000893 TGTTTAATATCCCAGTGGACTATCTTTGTTTTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * *
24000926 TGTTTACTATTCCAGCGGATTATCTCTATTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * * * *
24000959 TGTTTACTGTCCTAGTAGATTGTCTATGTTTTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* *
24000992 TGTTTACTGTCCCAGTGAACTATCTTTGTTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
24001025 TGTTTA
1 TGTTTA
24001031 TTGTCTTAGC
Statistics
Matches: 82, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 82 1.00
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.49
Consensus pattern (33 bp):
TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
Found at i:24005136 original size:13 final size:13
Alignment explanation
Indices: 24005118--24005143 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24005108 ACAATCGAAT
24005118 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
24005131 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
24005144 CTGAGAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTTTGTTTTTTG
Found at i:24005949 original size:51 final size:51
Alignment explanation
Indices: 24005889--24005990 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
24005879 CGGATCACAT
24005889 TTATCACTTGTCACTTGTC-CTTAATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCAC-TAATCAGATAAGTGTAGCTAAAGCTACCAC
* *
24005940 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
24005991 CACTACACCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:24006196 original size:43 final size:42
Alignment explanation
Indices: 24006080--24006215 Score: 114
Period size: 43 Copynumber: 3.2 Consensus size: 42
24006070 CCGCAAAAAA
* * * * *
24006080 GCCGCTAAAGGTCATGACTTTTAGTGGCACTTTTA-GAAAAAC
1 GCCGCTAAA-GACATGACCTTTAGTGGCGCTTTTATCACAAAC
* * * *
24006122 GCCGCTAAAGACATGATCTTTCGCGACGCTTTTATCACAAAC
1 GCCGCTAAAGACATGACCTTTAGTGGCGCTTTTATCACAAAC
* * *
24006164 GCTGCTAATA-AGCATGACCTTTAGTGGCGCTTTTATCGCAAAT
1 GCCGCTAA-AGA-CATGACCTTTAGTGGCGCTTTTATCACAAAC
*
24006207 GCCACTAAA
1 GCCGCTAAA
24006216 AGTACCGTTC
Statistics
Matches: 73, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
41 18 0.25
42 23 0.32
43 32 0.44
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (42 bp):
GCCGCTAAAGACATGACCTTTAGTGGCGCTTTTATCACAAAC
Found at i:24021057 original size:16 final size:15
Alignment explanation
Indices: 24021032--24021061 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
24021022 AAGAAAGTTT
24021032 TTAGTAGTAGTTAGA
1 TTAGTAGTAGTTAGA
24021047 TTAGTTAGTAGTTAG
1 TTAG-TAGTAGTTAG
24021062 CAGTTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
TTAGTAGTAGTTAGA
Found at i:24025588 original size:12 final size:12
Alignment explanation
Indices: 24025572--24025613 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
24025562 ATGAAATTGT
24025572 AAAATAAATA-A
1 AAAATAAATATA
24025583 ATAAATAAATATA
1 A-AAATAAATATA
*
24025596 AAAATAAACAGTA
1 AAAATAAATA-TA
24025609 AAAAT
1 AAAAT
24025614 TCAACCTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 17 0.63
13 9 0.33
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (12 bp):
AAAATAAATATA
Found at i:24030627 original size:16 final size:16
Alignment explanation
Indices: 24030604--24030648 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
24030594 ATAATTACAC
24030604 TAAA-AAATAATAAAA
1 TAAATAAATAATAAAA
* *
24030619 TAAATAAATAATACAT
1 TAAATAAATAATAAAA
*
24030635 TAAATAAAAAATAA
1 TAAATAAATAATAA
24030649 CTCTTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAATAAATAATAAAA
Found at i:24042240 original size:18 final size:18
Alignment explanation
Indices: 24042217--24042252 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24042207 TATTGTTTTG
24042217 AAATTTAAAATATATAAA
1 AAATTTAAAATATATAAA
24042235 AAATTTAAAATATATAAA
1 AAATTTAAAATATATAAA
24042253 TTATTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTTAAAATATATAAA
Found at i:24042262 original size:18 final size:18
Alignment explanation
Indices: 24042217--24042262 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
24042207 TATTGTTTTG
*
24042217 AAATTTAAAATATATAAA
1 AAATTAAAAATATATAAA
*
24042235 AAATTTAAAATATATAAA
1 AAATTAAAAATATATAAA
**
24042253 TTATTAAAAA
1 AAATTAAAAA
24042263 AACTCATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTAAAAATATATAAA
Found at i:24043555 original size:43 final size:39
Alignment explanation
Indices: 24043437--24043557 Score: 108
Period size: 43 Copynumber: 3.0 Consensus size: 39
24043427 GAGAAAATGA
24043437 ATAAATTTATAAAAATATAAAAAGATATATAT-G---TATAT
1 ATAAA-TTAT-AAAATATAAAAA-ATATATATAGATATATAT
24043475 ATAAATTATAAAATATAAAAAATATATATAAGAATATATAT
1 ATAAATTATAAAATATAAAAAATATATAT-AG-ATATATAT
*
24043516 ATACATTTATGAAAATGA-AAAAAATATGCATATAGATATATA
1 ATA-AATTAT-AAAAT-ATAAAAAATAT--ATATAGATATATA
24043558 GATATGTATA
Statistics
Matches: 71, Mismatches: 1, Indels: 17
0.80 0.01 0.19
Matches are distributed among these distances:
35 8 0.11
36 12 0.17
37 5 0.07
38 5 0.07
41 8 0.11
42 5 0.07
43 21 0.30
44 3 0.04
45 4 0.06
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.34
Consensus pattern (39 bp):
ATAAATTATAAAATATAAAAAATATATATAGATATATAT
Found at i:24043622 original size:43 final size:43
Alignment explanation
Indices: 24043569--24043650 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
24043559 ATATGTATAT
*
24043569 AAATTATAAAATATA-AAA-ATATATAAGTATGTGTATATACATA
1 AAATTATAAAA-ATACAAAGA-ATATAAGTATGTATATATACATA
* *
24043612 AAATTGTAAAAATACAAAGAATATATGTATGTATATATA
1 AAATTATAAAAATACAAAGAATATAAGTATGTATATATA
24043651 TAATGAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 3 0.09
43 30 0.88
44 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (43 bp):
AAATTATAAAAATACAAAGAATATAAGTATGTATATATACATA
Found at i:24045427 original size:50 final size:49
Alignment explanation
Indices: 24045334--24045809 Score: 275
Period size: 50 Copynumber: 9.7 Consensus size: 49
24045324 CTGTTCACCA
* ** *
24045334 GGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATT-TAACTGCAATGTTG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCT-ACTGCAATGTCG
* * * ** * *
24045384 GGGAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCTGCTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTACTGCAATGTCG
*
24045434 GGGAAGTAAGATTCGCCGTTG-CGACTTCAATC-TT-TA---CAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTCTACTGCAATGTCG
* * * * ** * *
24045478 GGGAAGCAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTACTGCAATGTCG
* * * * * *
24045528 GGGAAGTAAGATTTGTCGTTATGGCTTCAATCTTTTCAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATC-TTTCTACTGCAATGTCG
* * * * ** * *
24045578 GCGAAGTAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTACTGCAATGTCG
* * * * *
24045628 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ACTGCAATGTCG
** * ** * *
24045678 GGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTCTACTGCAATGTCG
* ** * * * * * *
24045728 GAGAAGTAAGATTTACCGTTGTGGCCTCAATCTTT-TAATTACAATGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCT-ACTGCAATGTCG
** * *
24045777 GGGAAGCGAGATTCACTGTTGTAGCTTCAATCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
24045810 GTTCCACCAC
Statistics
Matches: 318, Mismatches: 94, Indels: 29
0.72 0.21 0.07
Matches are distributed among these distances:
44 31 0.10
45 1 0.00
46 2 0.01
47 2 0.01
48 2 0.01
49 39 0.12
50 237 0.75
51 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (49 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTCTACTGCAATGTCG
Found at i:24045610 original size:100 final size:99
Alignment explanation
Indices: 24045334--24045830 Score: 572
Period size: 100 Copynumber: 5.0 Consensus size: 99
24045324 CTGTTCACCA
*** * * * * *
24045334 GGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAGCAAGATTCG
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATTCA
* * ** *
24045399 CCATTGTAGCTTCAATCTATTCTGCTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
** * * * **
24045434 GGGAAGTAAGATTCGCCGTTGCGACTTCAATC-TTT-A---CAATGTCGGGGAAGCAAGATTCGT
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCAC
*
24045494 CGTTGTAGCTTCAATCTGTTCCACTACACCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
** * * * *
24045528 GGGAAGTAAGATTTGTCGTTATGGCTTCAATCTTTTCAATTGCAATGTCGGCGAAGTAAGATTCA
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTT-AATTGCAATGTCGGGGAAGCAAGATTCA
* *
24045593 CCATTGTAGCTTCAATCTGTTCCACTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
* * *
24045628 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCGGGGAAGCGAGATTCG
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCA
*
24045693 CCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
* * * * *
24045728 GAGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTACAATGCCAGGGAAGCGAGATTCAC
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCAC
* *
24045793 TGTTGTAGCTTCAATCTGTTCCACCACACCGCCT
66 CGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
24045827 GGGA
1 GGGA
24045831 GATAATATTG
Statistics
Matches: 344, Mismatches: 46, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
94 77 0.22
95 3 0.01
97 2 0.01
98 3 0.01
99 63 0.18
100 192 0.56
101 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (99 bp):
GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCAC
CGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
Found at i:24045660 original size:194 final size:195
Alignment explanation
Indices: 24045331--24045830 Score: 646
Period size: 194 Copynumber: 2.5 Consensus size: 195
24045321 AATCTGTTCA
* * * *
24045331 CCAGGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAGCAAGAT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCT-TTTAATTGCAATG-TCGGGAAGCAAGAT
* * ** * *
24045396 TCGCCATTGTAGCTTCAATCTATTCTGCTGCACCGCCTGGGAAGTAAGATTCGCCGTTGCGACTT
64 TCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCACCGTTGCGACCT
*
24045461 CAATC-TTT-A-CAATGTCGGGGAAGCAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACAC
129 CAATCTTTTAATCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACAC
24045523 CG
194 CG
* *
24045525 CCAGGGAAGTAAGATTTGTCGTTATGGCTTCAATCTTTTCAATTGCAATGTCGGCGAAGTAAGAT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTT-AATTGCAATGTCGG-GAAGCAAGAT
* *
24045590 TCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCACCGTTGTGGCCT
64 TCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCACCGTTGCGACCT
* *
24045655 CAATCTTTTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTG
129 CAATC-TTTTAA-T-CAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTA
24045720 CACCG
191 CACCG
* * ** * * * *
24045725 CCTGAGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTACAATGCCAGGGAAGCGAGATT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTAATTGCAATGTC-GGGAAGCAAGATT
** **
24045790 CACTGTTGTAGCTTCAATCTGTTCCACCACACCGCCTGGGA
65 CACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGA
24045831 GATAATATTG
Statistics
Matches: 266, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
193 6 0.02
194 113 0.42
196 3 0.01
197 1 0.00
199 56 0.21
200 87 0.33
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (195 bp):
CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGAAGCAAGATTC
ACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCACCGTTGCGACCTCA
ATCTTTTAATCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACCG
Found at i:24045999 original size:128 final size:128
Alignment explanation
Indices: 24045827--24046616 Score: 1192
Period size: 128 Copynumber: 6.2 Consensus size: 128
24045817 CACACCGCCT
* * * * * *
24045827 GGGAGATAATATTGGTTGCGATCTACTCTACTGCAAGTTCAGAGAGATAAGATCTGTGTTTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
*
24045892 TCCGCTCCACTGTAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
24045955 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* * * *
24046020 TCCACTCTACTGCAACTTC-AGGAAGATAGGATTGATTTCTTCTGTCTACTCCACTTCTGCTTA
66 TCCGCTCCACTGCAACTTCAAGG-AGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
24046083 GGGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* * *
24046148 TCCGCTCCACTGCAACTTCAGGGAAATAGGATTGATTTCTTCTGTCTACTCCACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
* * *
24046211 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG-GTATAGGATCTGTAAATTTA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATCTGTGATTTTA
* * * *
24046275 ATCCGCTCCACTACAACTT-TAGGAAGATAAGATTGATTTCTTCTGTCTGCTCTACTACTGCTTA
65 ATCCGCTCCACTGCAACTTCAAGG-AGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
** *
24046339 GGGAGATAAGACTGGATGTAATCTGCTCTACTGCAACTTCAGAG-GTATAAGATTTGTGATTTTA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATCTGTGATTTTA
* ** * *
24046403 GTTTGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCTACTACTGCTTA
65 ATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
24046467 AGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* * * *
24046532 TCCACTCCATTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTATTGCTTA
66 TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
24046595 GGGAGATAAGACTGGATGCGAT
1 GGGAGATAAGACTGGATGCGAT
24046617 AAATCTGCTT
Statistics
Matches: 601, Mismatches: 55, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
127 6 0.01
128 590 0.98
129 5 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (128 bp):
GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
Found at i:24047119 original size:24 final size:24
Alignment explanation
Indices: 24047066--24047122 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
24047056 GGATTGCCCT
24047066 CACTGTAATCTTCAAAGTTCAATC
1 CACTGTAATCTTCAAAGTTCAATC
* * **
24047090 CGCTGTAGTCTTCAGGGTT-AAGTC
1 CACTGTAATCTTCAAAGTTCAA-TC
24047114 CACTGTAAT
1 CACTGTAAT
24047123 TTTGGGACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (24 bp):
CACTGTAATCTTCAAAGTTCAATC
Found at i:24047977 original size:6 final size:6
Alignment explanation
Indices: 24047968--24048034 Score: 57
Period size: 7 Copynumber: 10.7 Consensus size: 6
24047958 GACCTCTCCT
*
24047968 TTTTTC TTTTTC TTTTCTT TTTATTC TTTATTC TTTATTC -TTTTC ATTTTTC
1 TTTTTC TTTTTC TTTT-TC TTT-TTC TTT-TTC TTT-TTC TTTTTC -TTTTTC
*
24048020 -TTTTC TTTTTG TTTT
1 TTTTTC TTTTTC TTTT
24048035 ATTTTTTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
5 8 0.15
6 20 0.38
7 24 0.45
8 1 0.02
ACGTcount: A:0.06, C:0.13, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:24048483 original size:7 final size:7
Alignment explanation
Indices: 24048471--24048505 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
24048461 CCCCGGTAGA
24048471 GTTTTTT
1 GTTTTTT
24048478 GTTTTTT
1 GTTTTTT
*
24048485 ATTTTTT
1 GTTTTTT
24048492 GTTTTTT
1 GTTTTTT
24048499 GTTTTTT
1 GTTTTTT
24048506 TATTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (7 bp):
GTTTTTT
Found at i:24048497 original size:21 final size:22
Alignment explanation
Indices: 24048471--24048513 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
24048461 CCCCGGTAGA
24048471 GTTTTTTG-TTTTTTATTTTTT
1 GTTTTTTGTTTTTTTATTTTTT
24048492 GTTTTTTGTTTTTTTATTTTTT
1 GTTTTTTGTTTTTTTATTTTTT
24048514 TGCCTCCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.86
Consensus pattern (22 bp):
GTTTTTTGTTTTTTTATTTTTT
Found at i:24053552 original size:37 final size:37
Alignment explanation
Indices: 24053480--24053552 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
24053470 AAAATGAATA
* *
24053480 AAATTATAAAAATATAAAAAGATATATACGTATATAC
1 AAATTATAAAAATATAAAAAGATATATAAGAATATAC
24053517 AAATTAT-AAAATATAAAAA-ATATATGTAAGAATATA
1 AAATTATAAAAATATAAAAAGATATA--TAAGAATATA
24053553 TATACATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 5 0.16
36 12 0.38
37 15 0.47
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (37 bp):
AAATTATAAAAATATAAAAAGATATATAAGAATATAC
Found at i:24056296 original size:18 final size:18
Alignment explanation
Indices: 24056269--24056335 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
24056259 TCAAGTTTAA
*
24056269 TATTATTATATAATAAAT
1 TATTAATATATAATAAAT
24056287 TATTAATATAATTAATATAAT
1 TATTAATAT-A-TAATA-AAT
* *
24056308 TAATT-ATTTTTAATAAAT
1 T-ATTAATATATAATAAAT
24056326 TATTTAATAT
1 TA-TTAATAT
24056336 TTAAATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
17 1 0.03
18 14 0.36
19 9 0.23
20 5 0.13
21 7 0.18
22 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TATTAATATATAATAAAT
Found at i:24056302 original size:9 final size:9
Alignment explanation
Indices: 24056265--24056311 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
24056255 TAAATCAAGT
*
24056265 TTAATATTA
1 TTAATATAA
24056274 TT-ATATAA
1 TTAATATAA
*
24056282 -TAA-ATTA
1 TTAATATAA
24056289 TTAATATAA
1 TTAATATAA
24056298 TTAATATAA
1 TTAATATAA
24056307 TTAAT
1 TTAAT
24056312 TATTTTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
7 4 0.12
8 9 0.28
9 19 0.59
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
TTAATATAA
Found at i:24056312 original size:25 final size:24
Alignment explanation
Indices: 24056265--24056315 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
24056255 TAAATCAAGT
*
24056265 TTAATATTATTATATAATAAATTA
1 TTAATATAATTATATAATAAATTA
*
24056289 TTAATATAATTAATATAATTAATTA
1 TTAATATAATT-ATATAATAAATTA
24056314 TT
1 TT
24056316 TTTAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATATAATTATATAATAAATTA
Found at i:24057572 original size:15 final size:12
Alignment explanation
Indices: 24057541--24057565 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24057531 ATATTATAAA
24057541 AATAATATACTT
1 AATAATATACTT
24057553 AATAATATACTT
1 AATAATATACTT
24057565 A
1 A
24057566 CTCATAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATATACTT
Found at i:24059045 original size:79 final size:78
Alignment explanation
Indices: 24058913--24059059 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 78
24058903 TGTAAACATG
* * * * * * *
24058913 AATCAATTAAATAATTCTGTTTTAGGATTTTATTCCTACCGTTCAATAGAATTTGTTTGATTTTC
1 AATCAATTAAACAATTCTATTTCAGGATTCTATTCCTACCGTTCAATAAAATTTATTCGA-TTTC
24058978 TGTTTCCCAACAGA
65 TGTTTCCCAACAGA
* **
24058992 AATCAATTGAACAATTCTATTTCAGGATTCTATTCCTATTGTTCAATAAAATTTATTCGATTTCT
1 AATCAATTAAACAATTCTATTTCAGGATTCTATTCCTACCGTTCAATAAAATTTATTCGATTTCT
24059057 GTT
66 GTT
24059060 GTTAACAGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
78 8 0.14
79 50 0.86
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (78 bp):
AATCAATTAAACAATTCTATTTCAGGATTCTATTCCTACCGTTCAATAAAATTTATTCGATTTCT
GTTTCCCAACAGA
Found at i:24063025 original size:21 final size:20
Alignment explanation
Indices: 24062992--24063030 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24062982 AATTAGAACA
24062992 TTTTTTTAAATAAGTATATTG
1 TTTTTTTAAATAA-TATATTG
**
24063013 TTTTTTTTTATAATATAT
1 TTTTTTTAAATAATATAT
24063031 AGCATGGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTTTTAAATAATATATTG
Found at i:24065584 original size:21 final size:21
Alignment explanation
Indices: 24065558--24065605 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
24065548 TCAAAAATTC
** *
24065558 AAAAATCCTTAAAATTATAAA
1 AAAAATCCCAAAAAATATAAA
24065579 AAAAATCCCAAAAAATATAAA
1 AAAAATCCCAAAAAATATAAA
*
24065600 AGAAAT
1 AAAAAT
24065606 TTAAATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAAATCCCAAAAAATATAAA
Found at i:24073628 original size:205 final size:202
Alignment explanation
Indices: 24073052--24073631 Score: 505
Period size: 205 Copynumber: 2.8 Consensus size: 202
24073042 TACCGCCAAG
*
24073052 GCGTTAGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCC-GGTTCGACTCCCGGC
* * *
24073117 AAACGCAATAGCATTATCTTCA-ATTT-TTTTTGTTGGGCTTCGGAGTTTGGGCACTCG-GGGAC
65 AAACGCAATAGCATTAT-TTTATTTTTATTTTTGTTGGG-TTCGGAGTTTGAGCACT-GAGGGAC
* * ** * *
24073179 TTCAACAGGCCCTATGTTTGTAAGT-TACATTTTTTTTTTATACATTTTGTGACTATAATTAGCC
127 TTCAACAGGCCCTA--TATATAAGTATAC---TTTTTTTTATACATGCTGAGAC-ATAATTAACC
* *
24073243 GAGGTATATTTAATGAA
186 GAGATATATTTAACGAA
*
24073260 GCGTTTGTAGTCAAACGGTTAGGATAATTGCCTTCCAAGC-A-A-A-----TTCGACTCCCGGCA
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGTTCGACTCCCGGCA
* * *
24073317 AACGCAATAGC-TTA-ATTATCTGTTCTGA-TTTTGTTGGGTTCGTAGTTTTTGAGCACTTAGGG
66 AACGCAATAGCATTATTTTAT-T-TT-T-ATTTTTGTTGGGTTCGGAG--TTTGAGCACTGAGGG
* * * **
24073379 ACTT-AACAGGCCCTAATATAGTTAATATAATTTACTTTTTTTTTTAATATGCTGAGA-ATTGTT
125 ACTTCAACAGGCCCT-ATATA--TAA-GT-A--TACTTTTTTTTAT-ACATGCTGAGACATAATT
*
24073442 AACTGAGATATATTGTCAACGAA
182 AACCGAGATATATT-T-AACGAA
*
24073465 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGCGTTCGACTCTCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCG-GTTCGACTCCCGGC
* * *
24073530 AAACGCAATAGCAATAGTTTTATTTTTAATTTCCTTTTTGGGTTTGGAGTTTGAGCACTGAGGGA
65 AAACGCAATAGCATTA-TTTTATTTTT-ATTT--TTGTTGGGTTCGGAGTTTGAGCACTGAGGGA
24073595 CTTCAACAGGCCCTA-ATATAAGTA-ACGTTTTTTTTAT
126 CTTCAACAGGCCCTATATATAAGTATAC-TTTTTTTTAT
24073632 TTTATATTTT
Statistics
Matches: 302, Mismatches: 33, Indels: 74
0.74 0.08 0.18
Matches are distributed among these distances:
196 2 0.01
198 3 0.01
199 27 0.09
200 9 0.03
201 20 0.07
202 20 0.07
203 16 0.05
204 10 0.03
205 52 0.17
206 2 0.01
207 7 0.02
208 48 0.16
210 1 0.00
211 1 0.00
212 3 0.01
214 29 0.10
215 25 0.08
216 11 0.04
217 16 0.05
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (202 bp):
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGTTCGACTCCCGGCA
AACGCAATAGCATTATTTTATTTTTATTTTTGTTGGGTTCGGAGTTTGAGCACTGAGGGACTTCA
ACAGGCCCTATATATAAGTATACTTTTTTTTATACATGCTGAGACATAATTAACCGAGATATATT
TAACGAA
Found at i:24080591 original size:91 final size:91
Alignment explanation
Indices: 24080480--24080660 Score: 353
Period size: 91 Copynumber: 2.0 Consensus size: 91
24080470 TCGGAGTCTT
24080480 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
1 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
24080545 GTACATTAAAACTTTATCTTCATCAC
66 GTACATTAAAACTTTATCTTCATCAC
*
24080571 TATTTATAGGCATGATAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
1 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
24080636 GTACATTAAAACTTTATCTTCATCA
66 GTACATTAAAACTTTATCTTCATCA
24080661 TGATGGACAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (91 bp):
TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
GTACATTAAAACTTTATCTTCATCAC
Found at i:24085878 original size:9 final size:9
Alignment explanation
Indices: 24085864--24086034 Score: 50
Period size: 9 Copynumber: 18.6 Consensus size: 9
24085854 CTGCTTTTAC
24085864 TAAAAATTA
1 TAAAAATTA
*
24085873 TAAAAA-AA
1 TAAAAATTA
24085881 TAAAAATCTA
1 TAAAAAT-TA
24085891 T-AAAATCTA
1 TAAAAAT-TA
*
24085900 TAAATATTA
1 TAAAAATTA
**
24085909 TTAAATTTTAA
1 -TAAAAATT-A
24085920 TAAAAAAATT-
1 T--AAAAATTA
* *
24085930 CAAATATTA
1 TAAAAATTA
*
24085939 -AAAATTTA
1 TAAAAATTA
*
24085947 TTAAAAAATA
1 -TAAAAATTA
*
24085957 GAAAAA-TA
1 TAAAAATTA
***
24085965 TAAAAACCG
1 TAAAAATTA
*
24085974 TAAAAAATA
1 TAAAAATTA
24085983 TAAAAAATTGTA
1 T-AAAAA-T-TA
*
24085995 AAAAAATTA
1 TAAAAATTA
24086004 T-AAAATATA
1 TAAAAAT-TA
*
24086013 TAGAAA-TA
1 TAAAAATTA
*
24086021 TAAAAAATA
1 TAAAAATTA
24086030 TAAAA
1 TAAAA
24086035 TTTTATAAAG
Statistics
Matches: 121, Mismatches: 24, Indels: 34
0.68 0.13 0.19
Matches are distributed among these distances:
8 38 0.31
9 41 0.34
10 29 0.24
11 6 0.05
12 7 0.06
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.29
Consensus pattern (9 bp):
TAAAAATTA
Found at i:24085988 original size:10 final size:10
Alignment explanation
Indices: 24085975--24086034 Score: 54
Period size: 10 Copynumber: 6.3 Consensus size: 10
24085965 TAAAAACCGT
24085975 AAAAAATATA
1 AAAAAATATA
* *
24085985 AAAAATTGTA
1 AAAAAATATA
24085995 AAAAAAT-T-
1 AAAAAATATA
*
24086003 ATAAAATATA
1 AAAAAATATA
* *
24086013 TAGAAATAT-
1 AAAAAATATA
24086022 AAAAAATATA
1 AAAAAATATA
24086032 AAA
1 AAA
24086035 TTTTATAAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.16
9 9 0.24
10 23 0.61
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (10 bp):
AAAAAATATA
Found at i:24086000 original size:47 final size:47
Alignment explanation
Indices: 24085931--24086043 Score: 115
Period size: 47 Copynumber: 2.4 Consensus size: 47
24085921 AAAAAAATTC
* * *
24085931 AAATATTAAAAATTTATTAAAAAATAGAAAA-ATATAAAAACCGTAAA
1 AAATATAAAAAATTTATAAAAAAATAGAAAATATATAAAAA-CATAAA
* * * *
24085978 AAATATAAAAAATTGTA-AAAAAATTATAAAATATATAGAAATATAAA
1 AAATATAAAAAATT-TATAAAAAAATAGAAAATATATAAAAACATAAA
*
24086025 AAATAT-AAAATTTTATAAA
1 AAATATAAAAAATTTATAAA
24086044 GTCGTAAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.04
46 9 0.16
47 34 0.62
48 10 0.18
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (47 bp):
AAATATAAAAAATTTATAAAAAAATAGAAAATATATAAAAACATAAA
Found at i:24086027 original size:19 final size:19
Alignment explanation
Indices: 24085931--24086031 Score: 66
Period size: 18 Copynumber: 5.4 Consensus size: 19
24085921 AAAAAAATTC
*
24085931 AAATAT-TAAAAATTTATTAA
1 AAATATATAAAAA--TATAAA
*
24085951 AAA-ATAGAAAAATATAAA
1 AAATATATAAAAATATAAA
***
24085969 AACCGTA-AAAAATATAAA
1 AAATATATAAAAATATAAA
* * *
24085987 AAAT-TGTAAAAAAATTATA
1 AAATATATAAAAATA-TAAA
*
24086006 AAATATATAGAAATATAAA
1 AAATATATAAAAATATAAA
24086025 AAATATA
1 AAATATA
24086032 AAATTTTATA
Statistics
Matches: 63, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
17 1 0.02
18 26 0.41
19 21 0.33
20 15 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AAATATATAAAAATATAAA
Found at i:24086333 original size:16 final size:16
Alignment explanation
Indices: 24086295--24086333 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24086285 TTTTATAAAA
*
24086295 AATTTTAATTTTTAAT
1 AATTTTAATATTTAAT
*
24086311 AAATTTAATATTTAAT
1 AATTTTAATATTTAAT
*
24086327 ATTTTTA
1 AATTTTA
24086334 TTAAAATTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATTTTAATATTTAAT
Found at i:24086342 original size:19 final size:19
Alignment explanation
Indices: 24086315--24086371 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
24086305 TTTAATAAAT
*
24086315 TTAATATTTAATATTTTTA
1 TTAAAATTTAATATTTTTA
*
24086334 TTAAAATTTAATAAATTTT-
1 TTAAAATTTAAT-ATTTTTA
*
24086353 CTAAAATTT-AT-TTTTTA
1 TTAAAATTTAATATTTTTA
24086370 TT
1 TT
24086372 TATTTTTCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 4 0.13
17 1 0.03
18 2 0.06
19 19 0.61
20 5 0.16
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAAAATTTAATATTTTTA
Found at i:24099128 original size:30 final size:30
Alignment explanation
Indices: 24099092--24099170 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
24099082 CTAACTAGGA
24099092 ATCTCCTCTTGGTCTCACTTAAGCATATAG
1 ATCTCCTCTTGGTCTCACTTAAGCATATAG
* *
24099122 ATCTCCTATTGGTCTCACTTAGGCATATAG
1 ATCTCCTCTTGGTCTCACTTAAGCATATAG
* * *
24099152 GTCTTCTCTCGGTCTCACT
1 ATCTCCTCTTGGTCTCACT
24099171 ATTCGGCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (30 bp):
ATCTCCTCTTGGTCTCACTTAAGCATATAG
Found at i:24106743 original size:16 final size:17
Alignment explanation
Indices: 24106715--24106750 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
24106705 TTAAAATTGG
*
24106715 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTAATTA
24106732 ATTGAG-AAATTAATTA
1 ATTGAGAAAATTAATTA
24106748 ATT
1 ATT
24106751 TAAATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (17 bp):
ATTGAGAAAATTAATTA
Found at i:24114199 original size:23 final size:23
Alignment explanation
Indices: 24114144--24114207 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 23
24114134 TAAAGGTTAA
* *
24114144 TGAATT-TATATATTTAATCATTC
1 TGAATTATATATATTAAAT-ATAC
24114167 T--ATTAT-TATATTAAATATAC
1 TGAATTATATATATTAAATATAC
*
24114187 TGAATTATATATATAAAATAT
1 TGAATTATATATATTAAATAT
24114208 TAAGTTATCG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
20 4 0.12
21 12 0.35
22 6 0.18
23 12 0.35
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (23 bp):
TGAATTATATATATTAAATATAC
Found at i:24115226 original size:59 final size:59
Alignment explanation
Indices: 24115110--24115248 Score: 138
Period size: 59 Copynumber: 2.3 Consensus size: 59
24115100 TTAAAATTTG
* * * * *
24115110 TTGAGGGCTAAGTTTATTGATTTTTTTAGAATTTGAATTAAAATGATAAATTTTGTAAATA
1 TTGAGGGCTAA-TTTGTTGATTTTTTTA-AATTTGAATCAAAATGATAAAATATGTAAACA
* *
24115171 TTGAGGGCTAATTTGTTGATTTTTTGT-ATTTATG-ATCAAATTGATAAAATATGTAAACA
1 TTGAGGGCTAATTTGTTGATTTTTT-TAAATT-TGAATCAAAATGATAAAATATGTAAACA
*
24115230 TTATAGGGCTAAATTTGTT
1 TT-GAGGGCT-AATTTGTT
24115249 ATTGTACTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
59 25 0.38
60 21 0.32
61 20 0.30
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (59 bp):
TTGAGGGCTAATTTGTTGATTTTTTTAAATTTGAATCAAAATGATAAAATATGTAAACA
Found at i:24117991 original size:40 final size:40
Alignment explanation
Indices: 24117936--24118332 Score: 429
Period size: 40 Copynumber: 9.9 Consensus size: 40
24117926 AATTATTGTA
**
24117936 TGAATGCACATACGTGCCCCTAATTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
24117976 TGAATGTAGATACGTGCCTCTGATTGTACTTCGATATCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
24118016 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTATCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
24118056 TAAATTCACATATGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
24118096 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA-CCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
24118135 TTAGATGCACATACGTGCCTCTGTTTGTACTTCGGTACCCT
1 TGA-ATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
24118176 TGGATACACATACATGCCCCTGTTTGTACTTCAGTATCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
** * *
24118216 TGAATGCACATACGTGCCTTTATTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
24118256 T-AGATGCACATACATGTCCCTATTTGTACTTCAGTAACCC
1 TGA-ATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
24118296 TGAATACACATATGTGCCCTTGATTGTACTTCGGTAC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTAC
24118333 TTATGAAGGC
Statistics
Matches: 293, Mismatches: 60, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
39 6 0.02
40 283 0.97
41 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:24120704 original size:15 final size:16
Alignment explanation
Indices: 24120686--24120719 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24120676 AAATTAAATT
*
24120686 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
24120701 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
24120717 AAT
1 AAT
24120720 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:24145876 original size:4 final size:4
Alignment explanation
Indices: 24145867--24145902 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
24145857 GCTTCATGTT
*
24145867 TTTA TTTA TTTA CTTA TTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTT
24145903 TTACAAACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.90
5 3 0.10
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:24145888 original size:17 final size:17
Alignment explanation
Indices: 24145866--24145903 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
24145856 TGCTTCATGT
24145866 TTTTATTTATTTACTTA
1 TTTTATTTATTTACTTA
*
24145883 TTTTATTTATTTATTTA
1 TTTTATTTATTTACTTA
24145900 TTTT
1 TTTT
24145904 TACAAACCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTATTTACTTA
Found at i:24146946 original size:22 final size:24
Alignment explanation
Indices: 24146900--24146944 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
24146890 GAAAAATATT
*
24146900 AAATATATATATTTTTTATTTTTA
1 AAATATATATAGTTTTTATTTTTA
24146924 AAATATA-ATAGTTTTTATTTT
1 AAATATATATAGTTTTTATTTT
24146945 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (24 bp):
AAATATATATAGTTTTTATTTTTA
Found at i:24147090 original size:68 final size:68
Alignment explanation
Indices: 24147011--24147220 Score: 352
Period size: 68 Copynumber: 3.1 Consensus size: 68
24147001 TCAAGTTTGT
* *
24147011 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATATAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
24147076 AAA
66 AAA
* *
24147079 TTTACTAATCAAATGTTGGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTAAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
24147144 AAA
66 AAA
*
24147147 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATAGAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
24147210 AAT
66 AAA
24147213 TTTACTAA
1 TTTACTAA
24147221 CAATTAATTT
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
66 26 0.19
67 1 0.01
68 107 0.80
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:24147150 original size:9 final size:9
Alignment explanation
Indices: 24147109--24147148 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
24147099 TTTTATTACA
24147109 ACAATTAAT
1 ACAATTAAT
24147118 ACAATTAAT
1 ACAATTAAT
24147127 ACAATTAAT
1 ACAATTAAT
*
24147136 A-ATTTAAT
1 ACAATTAAT
24147144 A-AATT
1 ACAATT
24147149 TACTAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 10 0.34
9 19 0.66
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (9 bp):
ACAATTAAT
Found at i:24147230 original size:16 final size:16
Alignment explanation
Indices: 24147209--24147249 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
24147199 AATAATTTGA
*
24147209 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
24147225 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
24147241 TAGTTTTAA
1 TAATTTTAA
24147250 GTTTATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:24147234 original size:22 final size:22
Alignment explanation
Indices: 24147224--24147284 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
24147214 TTACTAACAA
* * *
24147224 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
* *
24147246 TTAAGTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
24147268 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
24147285 CGGGCCGGGC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:24147771 original size:4 final size:4
Alignment explanation
Indices: 24147753--24147802 Score: 59
Period size: 4 Copynumber: 12.2 Consensus size: 4
24147743 ATCTCCTCAC
24147753 ATTT -TTT ATTTT ATTT ATTGT -TATT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT A-TTT ATTT ATT-T AT-TT ATTT ATTT ATTT ATTT ATTT ATTT
24147802 A
1 A
24147803 CATGTTCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
3 3 0.07
4 31 0.76
5 7 0.17
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:24153825 original size:23 final size:23
Alignment explanation
Indices: 24153778--24153836 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
24153768 TTTATGTCCC
24153778 AAAATTACAGTGGACTGAACGTTG
1 AAAATTACAGT-GACTGAACGTTG
* * *
24153802 AAGATTACAGTGATTGAACTTTG
1 AAAATTACAGTGACTGAACGTTG
24153825 AAAATTACAGTG
1 AAAATTACAGTG
24153837 GGGAAAATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 21 0.68
24 10 0.32
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAATTACAGTGACTGAACGTTG
Found at i:24154494 original size:88 final size:87
Alignment explanation
Indices: 24154385--24154673 Score: 255
Period size: 88 Copynumber: 3.3 Consensus size: 87
24154375 TTGTAGATTT
* * * * *
24154385 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAGGGCAAATCTTATCTTCCCAAGGTAGTAAGG
1 TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCAAATCTTATCTTCCCAAGATAGT-AGG
*
24154450 AAGCAGATTTAAGCCACTAGTCC
65 AAGCAGATTTAAGCCACCAGTCC
* ** * * * * **
24154473 TATCTCCCTAAGCAGCAGTGGAGTATG-TTGAAGATAGTAGATCTTGT-TT-TCTTGTACTAGTA
1 TATCTCCCTAAGCAGCAGTGGAGTA-GATCGAAGACGGCAAATCTTATCTTCCCAAG-A-TAGTA
* ** *
24154535 GTGAAGTAGATCGAAAG-CACCA-ACC
63 G-GAAGCAGAT-TTAAGCCACCAGTCC
* *
24154560 TTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCGAGATAGTAGG
1 -TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCAAATCTTATCTTCCCAAGATAGTAGG
*
24154625 AAGCAGATTTAAGCTACCAGTCC
65 AAGCAGATTTAAGCCACCAGTCC
* * *
24154648 TATCTCCCTGAGTAACAGTGGAGTAG
1 TATCTCCCTAAGCAGCAGTGGAGTAG
24154674 GTTGAAGATT
Statistics
Matches: 154, Mismatches: 36, Indels: 23
0.72 0.17 0.11
Matches are distributed among these distances:
86 5 0.03
87 42 0.27
88 98 0.64
89 7 0.05
90 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (87 bp):
TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCAAATCTTATCTTCCCAAGATAGTAGGA
AGCAGATTTAAGCCACCAGTCC
Found at i:24154736 original size:44 final size:44
Alignment explanation
Indices: 24154559--24154738 Score: 118
Period size: 44 Copynumber: 4.1 Consensus size: 44
24154549 AAGCACCAAC
24154559 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
* * * ** ** * *
24154603 CTTATCTTCCC-GAG-A-TAGTAGGAAGCAGATTTAAG-CTACCAGT
1 CTTATC-TCCCTAAGCAGCAGT-GG-AGTAGATCGAAGACGGCGAAT
* * * * * * ** *
24154646 CCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAGATTG-TAGAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGA-AT
*
24154690 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
24154734 CTTAT
1 CTTAT
24154739 TTTTCAAAGA
Statistics
Matches: 99, Mismatches: 28, Indels: 18
0.68 0.19 0.12
Matches are distributed among these distances:
42 7 0.07
43 25 0.25
44 59 0.60
45 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
Found at i:24154821 original size:131 final size:131
Alignment explanation
Indices: 24154559--24154828 Score: 391
Period size: 131 Copynumber: 2.1 Consensus size: 131
24154549 AAGCACCAAC
**
24154559 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCGAGATAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
* * * ***
24154624 GAAGCAGATTTAAGCTACCAGTCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAGATTGTAGA
66 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAAATCACAGA
24154689 T
131 T
* * *
24154690 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATTTTTCAAAGATAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
**
24154755 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAAGTGGCAGTGGAGT-GGATT-AAAATCACA
66 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTG-AGTAACAGTGGAGTAGG-TTGAAAATCACA
24154818 GAT
129 GAT
24154821 CTTATCTC
1 CTTATCTC
24154829 TCTGAAGTTG
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 110 0.89
132 14 0.11
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (131 bp):
CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAAATCACAGA
T
Found at i:24154853 original size:44 final size:44
Alignment explanation
Indices: 24154779--24155139 Score: 175
Period size: 44 Copynumber: 8.5 Consensus size: 44
24154769 CCACCAATCC
* * **
24154779 TATCTCCCTGAAGTGGCAGTGGAGTGGATTAAAATCACAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
* *
24154823 TATCTCTCTGAAGTTGCAGTAGAGCAGATT-ACATC-CAG-TCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
** * * ** *
24154864 TATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAGAAATCA-A-TTC-
1 TATCTCCCTGAAGTTGCAGTAGAGCAG--ATTA-AAATCACAGATCT
* * * *
24154907 TATCTCCCTGACGTTGCAGTGGAGCAAATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
* * * * *
24154951 TATCTCTCAGAATTTGCAGTAGAGCAGA-TCACATC-CAG-TCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
* * * *
24154992 TATCTCCCTAAACAGTAGTGGAGCAGA-CAGA--AGAAAT--CA-ATCC
1 TATCTCCCT-GA-AGT--TGCAGTAGAGCAGATTA-AAATCACAGATCT
* * * * *
24155035 TATCTCCCCGACGTTGCAGTAGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
* * * ***
24155079 TATCTCTCTGAAGTTGTAGTAGAGTAGA-TCGCATC-CAG-TCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
*
24155120 TATCTCCCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT
24155140 GGAGTAGACT
Statistics
Matches: 231, Mismatches: 64, Indels: 47
0.68 0.19 0.14
Matches are distributed among these distances:
39 7 0.03
40 16 0.07
41 51 0.22
42 15 0.06
43 37 0.16
44 98 0.42
45 7 0.03
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAATCACAGATCT
Found at i:24154926 original size:128 final size:128
Alignment explanation
Indices: 24154773--24155198 Score: 584
Period size: 128 Copynumber: 3.3 Consensus size: 128
24154763 TTTAAGCCAC
* * *
24154773 CAATCCTATCTCCCTGAAGTGGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
*
24154838 GCAGTAGAGCAGATTACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
66 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * ** * *
24154901 CAATTCTATCTCCCTGACGTTGCAGTGGAGCAAATTAAAACCACAGATCTTATCTCTCAGAATTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
*
24154966 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAACAGTAGTGGAGCAGACAGAAGAAAT
66 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * *
24155029 CAATCCTATCTCCCCGACGTTGCAGTAGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * ** * * * **
24155094 GTAGTAGAGTAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGCTA-
66 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAGAAAT
* *
24155157 CTAATCCTATCTCCCTAAAGTTGCAGTGGAGAGGATTAAAAC
1 C-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
24155199 GATGAATCCT
Statistics
Matches: 261, Mismatches: 35, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
128 207 0.79
129 54 0.21
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (128 bp):
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
Found at i:24155207 original size:44 final size:44
Alignment explanation
Indices: 24155120--24155210 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
24155110 CATCCAGTCT
* * *
24155120 TATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGCTACTAATCC
1 TATCTCCCTAAAGTTGCAGTGGAGTAGACTAAAACGACTAATCC
*
24155164 TATCTCCCTAAAGTTGCAGTGGAG-AGGATTAAAACGA-TGAATCC
1 TATCTCCCTAAAGTTGCAGTGGAGTA-GACTAAAACGACT-AATCC
24155208 TAT
1 TAT
24155211 ACCTTTGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 39 0.95
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGCAGTGGAGTAGACTAAAACGACTAATCC
Found at i:24156032 original size:4 final size:4
Alignment explanation
Indices: 24156023--24156062 Score: 62
Period size: 4 Copynumber: 9.8 Consensus size: 4
24156013 GCTTCTTGTT
*
24156023 TTTA TTTA TTTA CTTA TTTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTT
24156063 TTACATACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 30 0.91
5 3 0.09
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:24156044 original size:17 final size:17
Alignment explanation
Indices: 24156022--24156062 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
24156012 TGCTTCTTGT
24156022 TTTTATTTATTTACTTA
1 TTTTATTTATTTACTTA
*
24156039 TTTTATTTATTTATTTA
1 TTTTATTTATTTACTTA
24156056 -TTTATTT
1 TTTTATTT
24156063 TTACATACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTATTTACTTA
Found at i:24156048 original size:21 final size:21
Alignment explanation
Indices: 24156023--24156063 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24156013 GCTTCTTGTT
24156023 TTTATTTATTTACTTATTTTA
1 TTTATTTATTTACTTATTTTA
*
24156044 TTTATTTATTTATTTATTTT
1 TTTATTTATTTACTTATTTT
24156064 TACATACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTTATTTACTTATTTTA
Found at i:24157206 original size:16 final size:15
Alignment explanation
Indices: 24157182--24157211 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
24157172 CTTATATTTT
24157182 TTATTTTATTTATTG
1 TTATTTTATTTATTG
24157197 TTATTATTATTTATT
1 TTATT-TTATTTATT
24157212 TATTTACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TTATTTTATTTATTG
Done.