Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 87 of 199
Found at i:24340523 original size:25 final size:25
Alignment explanation
Indices: 24340494--24340569 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
24340484 GGAAGAAATA
24340494 ACCATCAGAGGAACAAAGAACCAGC
1 ACCATCAGAGGAACAAAGAACCAGC
* * *
24340519 ACCATCAGAAGAACAAAGAATCAGT
1 ACCATCAGAGGAACAAAGAACCAGC
* * *
24340544 ACCAGT-AGAGGATCAATGAAGCAGC
1 ACCA-TCAGAGGAACAAAGAACCAGC
24340569 A
1 A
24340570 GAGGAACAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.09
Consensus pattern (25 bp):
ACCATCAGAGGAACAAAGAACCAGC
Found at i:24341369 original size:18 final size:18
Alignment explanation
Indices: 24341348--24341387 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
24341338 ATTCTGGAAT
*
24341348 TTTTATAAA-TATTTTGA
1 TTTTAAAAATTATTTTGA
24341365 GTTTTAAAAATTATTTTGA
1 -TTTTAAAAATTATTTTGA
24341384 TTTT
1 TTTT
24341388 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
TTTTAAAAATTATTTTGA
Found at i:24341388 original size:19 final size:18
Alignment explanation
Indices: 24341346--24341388 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
24341336 AAATTCTGGA
*
24341346 ATTTTTATAAATATTTTG
1 ATTTTTAAAAATATTTTG
*
24341364 AGTTTTAAAAATTATTTTG
1 ATTTTTAAAAA-TATTTTG
24341383 ATTTTT
1 ATTTTT
24341389 TTAATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTTTAAAAATATTTTG
Found at i:24348002 original size:17 final size:17
Alignment explanation
Indices: 24347976--24348009 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24347966 GATTAAAAAT
*
24347976 CAAATCTTCTAAGATTA
1 CAAATATTCTAAGATTA
24347993 CAAATATTCTAAGATTA
1 CAAATATTCTAAGATTA
24348010 GTTTCCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (17 bp):
CAAATATTCTAAGATTA
Found at i:24351403 original size:22 final size:22
Alignment explanation
Indices: 24351375--24351416 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24351365 GAGCCGTGGA
24351375 GGACCGGAGGTAGATCGGTGTC
1 GGACCGGAGGTAGATCGGTGTC
* *
24351397 GGACCGGAGGTGGATTGGTG
1 GGACCGGAGGTAGATCGGTG
24351417 CCAGAGGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.50, T:0.19
Consensus pattern (22 bp):
GGACCGGAGGTAGATCGGTGTC
Found at i:24352069 original size:20 final size:20
Alignment explanation
Indices: 24352046--24352084 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24352036 AATGGAATAC
24352046 AATGGGATACT-ATGGGATGT
1 AATGGGATA-TGATGGGATGT
*
24352066 AATGTGATATGATGGGATG
1 AATGGGATATGATGGGATG
24352085 ATTACAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31
Consensus pattern (20 bp):
AATGGGATATGATGGGATGT
Found at i:24352602 original size:19 final size:19
Alignment explanation
Indices: 24352578--24352620 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
24352568 TAATGAACTT
*
24352578 TTAAACCTATACCGACTAA
1 TTAAACCTATACCAACTAA
24352597 TTAAACCTATACCAACTAA
1 TTAAACCTATACCAACTAA
24352616 TTAAA
1 TTAAA
24352621 TTATGAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
TTAAACCTATACCAACTAA
Found at i:24356872 original size:18 final size:17
Alignment explanation
Indices: 24356845--24356878 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24356835 CTGGACCTTG
24356845 ACCTGCAGGAGGATAGTA
1 ACCTGCAGGAGG-TAGTA
*
24356863 ACCTGGAGGAGGTAGT
1 ACCTGCAGGAGGTAGT
24356879 GGATGCCCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.15, G:0.38, T:0.18
Consensus pattern (17 bp):
ACCTGCAGGAGGTAGTA
Found at i:24357029 original size:15 final size:15
Alignment explanation
Indices: 24357009--24357091 Score: 148
Period size: 15 Copynumber: 5.5 Consensus size: 15
24356999 TGCTGTTGTG
24357009 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
*
24357024 CAGGTGGATATTGCC
1 CAGGTGGATACTGCC
*
24357039 CAGGTGGATATTGCC
1 CAGGTGGATACTGCC
24357054 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
24357069 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
24357084 CAGGTGGA
1 CAGGTGGA
24357092 AGTAGCGGTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 66 1.00
ACGTcount: A:0.20, C:0.23, G:0.35, T:0.22
Consensus pattern (15 bp):
CAGGTGGATACTGCC
Found at i:24357453 original size:11 final size:11
Alignment explanation
Indices: 24357426--24357460 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
24357416 AGACTCTGAA
24357426 AATCAAAACA-
1 AATCAAAACAC
*
24357436 AAACAAAACAC
1 AATCAAAACAC
24357447 AATCAAAACAC
1 AATCAAAACAC
24357458 AAT
1 AAT
24357461 TGATTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.69, C:0.23, G:0.00, T:0.09
Consensus pattern (11 bp):
AATCAAAACAC
Found at i:24358694 original size:11 final size:11
Alignment explanation
Indices: 24358678--24358704 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24358668 TAAAAATAAA
24358678 AAAATTATTTT
1 AAAATTATTTT
24358689 AAAATTATTTT
1 AAAATTATTTT
24358700 AAAAT
1 AAAAT
24358705 AAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AAAATTATTTT
Found at i:24360570 original size:21 final size:20
Alignment explanation
Indices: 24360532--24360571 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
24360522 AAGTTTGTGT
24360532 TATTATTTTTATTTATAAAA
1 TATTATTTTTATTTATAAAA
24360552 TATTATATATTTA-TTATAAA
1 TATTAT-T-TTTATTTATAAA
24360572 CTTAGAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATTTTTATTTATAAAA
Found at i:24362175 original size:18 final size:18
Alignment explanation
Indices: 24362152--24362189 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
24362142 TGCGTGTTAT
24362152 AAATGTT-ATGAAATTGTG
1 AAATGTTGAT-AAATTGTG
24362170 AAATGTTGATAAATTGTG
1 AAATGTTGATAAATTGTG
24362188 AA
1 AA
24362190 TACTGGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
AAATGTTGATAAATTGTG
Found at i:24369194 original size:25 final size:25
Alignment explanation
Indices: 24369127--24369194 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
24369117 TTCAAGCGAG
* *
24369127 CCAT-ATCGGGAAGCTCACAAAGAG
1 CCATAATCAGGAAGCTCACAAAGAC
24369151 CCAGTTAAT-AGGAAGCTCACAAAGAC
1 CCA--TAATCAGGAAGCTCACAAAGAC
24369177 CCATAATCAGGAAGCTCA
1 CCATAATCAGGAAGCTCA
24369195 TAAGAGCTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 7 0.18
25 10 0.26
26 19 0.50
27 2 0.05
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.15
Consensus pattern (25 bp):
CCATAATCAGGAAGCTCACAAAGAC
Found at i:24369662 original size:21 final size:21
Alignment explanation
Indices: 24369638--24369679 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24369628 TAAATTTAAC
*
24369638 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
24369659 TCAATTCCATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
24369680 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:24369669 original size:10 final size:11
Alignment explanation
Indices: 24369649--24369679 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
24369639 CAATTTAATA
24369649 CAATTCACATT
1 CAATTCACATT
24369660 CAATTC-CATT
1 CAATTCACATT
24369670 CAATTCACAT
1 CAATTCACAT
24369680 CTTAGGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
CAATTCACATT
Found at i:24371743 original size:12 final size:13
Alignment explanation
Indices: 24371718--24371749 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
24371708 ATTTTTCAGG
24371718 TCATTTTAATTTT
1 TCATTTTAATTTT
24371731 TCATTTTAA-TTT
1 TCATTTTAATTTT
24371743 TCATTTT
1 TCATTTT
24371750 GGAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (13 bp):
TCATTTTAATTTT
Found at i:24371826 original size:58 final size:59
Alignment explanation
Indices: 24371732--24371852 Score: 138
Period size: 58 Copynumber: 2.1 Consensus size: 59
24371722 TTTAATTTTT
* ** * * *
24371732 CATTTT-AATTTTCATTTTGGAAAAAATTACATTCATTTCGAAATGATT-CTATTTCTC
1 CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
* * * *
24371789 TATTTTCATTTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTCCTATTGCTC
1 CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
24371848 CATTT
1 CATTT
24371853 CACCATTTCT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 5 0.10
58 34 0.67
59 12 0.24
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.47
Consensus pattern (59 bp):
CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
Found at i:24374156 original size:30 final size:30
Alignment explanation
Indices: 24374110--24374175 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
24374100 AGACTATTTT
*
24374110 ATTAATGCAATAAATGAATTTGTTTTATTA
1 ATTAATACAATAAATGAATTTGTTTTATTA
*
24374140 ATTAATACAATCAATGAATTTGTTTTATTA
1 ATTAATACAATAAATGAATTTGTTTTATTA
24374170 ATTAAT
1 ATTAAT
24374176 CTGTTTGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.47
Consensus pattern (30 bp):
ATTAATACAATAAATGAATTTGTTTTATTA
Found at i:24376813 original size:29 final size:30
Alignment explanation
Indices: 24376781--24376850 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
24376771 AAGGAAGCTG
* * *
24376781 TTGTGGCTATCTTTA-TTAAATGAATGTCT
1 TTGTGGATATCTTTATTTAAAAGAATGCCT
* *
24376810 TTGTGGTTATC-TTATTTAAAAGGATGCCT
1 TTGTGGATATCTTTATTTAAAAGAATGCCT
24376839 TTGTGGATATCT
1 TTGTGGATATCT
24376851 CTGTTAGAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (30 bp):
TTGTGGATATCTTTATTTAAAAGAATGCCT
Found at i:24376861 original size:29 final size:28
Alignment explanation
Indices: 24376749--24376862 Score: 72
Period size: 29 Copynumber: 3.9 Consensus size: 28
24376739 TAAGCGGACA
*
24376749 CCTTTGTGGCA-ATCTCTGTTATAAGGAAG
1 CCTTTGTGG-ATATCTCTGTTA-AAGGATG
* * * *
24376778 -CTGTTGTGGCTATCTTTATTAAATGAATG
1 CCT-TTGTGGATATCTCTGTTAAA-GGATG
* * *
24376807 TCTTTGTGGTTATCT-TATTTAAAAGGATG
1 CCTTTGTGGATATCTCT-GTT-AAAGGATG
24376836 CCTTTGTGGATATCTCTGTTAGAAGGA
1 CCTTTGTGGATATCTCTGTTA-AAGGA
24376863 CGCCCTCATT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
28 6 0.09
29 54 0.82
30 6 0.09
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (28 bp):
CCTTTGTGGATATCTCTGTTAAAGGATG
Found at i:24377249 original size:11 final size:11
Alignment explanation
Indices: 24377233--24377283 Score: 102
Period size: 11 Copynumber: 4.6 Consensus size: 11
24377223 GGGGGGGACG
24377233 ACGCCAAGGCT
1 ACGCCAAGGCT
24377244 ACGCCAAGGCT
1 ACGCCAAGGCT
24377255 ACGCCAAGGCT
1 ACGCCAAGGCT
24377266 ACGCCAAGGCT
1 ACGCCAAGGCT
24377277 ACGCCAA
1 ACGCCAA
24377284 AGGAGTGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 40 1.00
ACGTcount: A:0.29, C:0.37, G:0.25, T:0.08
Consensus pattern (11 bp):
ACGCCAAGGCT
Found at i:24384472 original size:45 final size:45
Alignment explanation
Indices: 24384408--24384500 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
24384398 AAGTATCATA
24384408 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
1 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
24384453 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
1 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
24384498 TCA
1 TCA
24384501 CATATAAGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
Found at i:24386440 original size:25 final size:25
Alignment explanation
Indices: 24386407--24386456 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24386397 CTTTAAGTCA
24386407 TCTCTTGTTCATAATGAAAAAATGC
1 TCTCTTGTTCATAATGAAAAAATGC
24386432 TCTCTTGTTCATAATGAAAAAATGC
1 TCTCTTGTTCATAATGAAAAAATGC
24386457 ATTCACTGCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
TCTCTTGTTCATAATGAAAAAATGC
Found at i:24388236 original size:54 final size:53
Alignment explanation
Indices: 24388125--24388411 Score: 267
Period size: 54 Copynumber: 5.6 Consensus size: 53
24388115 AAATAAAAAA
* * * * *
24388125 TTTTTGGGTGCTAGCCTGTCAATGGCCGACACTAGCAGTAC----AAAATTTT
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAATACGAAAAAAAATTT
*
24388174 TTTTTGGGTGCTGGTCTGTCAATGGCCTG-CACCAACAATACGAAAAAGAAATTT
1 TTTTTGGGTGCTGGCCTGTCAATGGCC-GACACCAACAATACGAAAAA-AAATTT
* * * *
24388228 TTTTTGGGTGCTGGCCTGTTAATGGCCGTCACCAGCAGTACGAAAAAAAA---
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAATACGAAAAAAAATTT
* *
24388278 ATTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAGTACGAAAAAAAACTTT
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAATACGAAAAAAAA-TTT
** * * **
24388332 TTTTTTTGTGCTGGCCTGTCAATGGCCGGCA-CTAGTATACGAAAAAAAA---
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAATACGAAAAAAAATTT
* *
24388381 ATTTTGGGTGCTGACCT-TCTAATGGCCGACA
1 TTTTTGGGTGCTGGCCTGTC-AATGGCCGACA
24388412 TCAAACTTTA
Statistics
Matches: 199, Mismatches: 27, Indels: 24
0.80 0.11 0.10
Matches are distributed among these distances:
48 2 0.01
49 57 0.29
50 47 0.24
53 20 0.10
54 73 0.37
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (53 bp):
TTTTTGGGTGCTGGCCTGTCAATGGCCGACACCAACAATACGAAAAAAAATTT
Found at i:24388320 original size:104 final size:104
Alignment explanation
Indices: 24388125--24388411 Score: 368
Period size: 103 Copynumber: 2.8 Consensus size: 104
24388115 AAATAAAAAA
* ***** *
24388125 TTTTTGGGTGCTAGCCTGTCAATGGCCGACACTAGCAGTAC-AAAATTTTTTTTTGGGTGCTGGT
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACTAGCAGTACGAAAAAAAAATTTTGGGTGCTGGC
24388189 CTGTCAATGGCCTG-CACCAACAATACGAAAAAGAAA-TTT
66 CTGTCAATGGCC-GACACCAACAATACGAAAAA-AAACTTT
* * *
24388228 TTTTTGGGTGCTGGCCTGTTAATGGCCGTCACCAGCAGTACGAAAAAAAAATTTTGGGTGCTGGC
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACTAGCAGTACGAAAAAAAAATTTTGGGTGCTGGC
*
24388293 CTGTCAATGGCCGACACCAACAGTACGAAAAAAAACTTT
66 CTGTCAATGGCCGACACCAACAATACGAAAAAAAACTTT
** * * *
24388332 TTTTTTTGTGCTGGCCTGTCAATGGCCGGCACTAGTA-TACGAAAAAAAAATTTTGGGTGCTGAC
1 TTTTTGGGTGCTGGCCTGTCAATGGCCGACACTAGCAGTACGAAAAAAAAATTTTGGGTGCTGGC
24388396 CT-TCTAATGGCCGACA
66 CTGTC-AATGGCCGACA
24388412 TCAAACTTTA
Statistics
Matches: 162, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
102 2 0.01
103 80 0.49
104 80 0.49
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (104 bp):
TTTTTGGGTGCTGGCCTGTCAATGGCCGACACTAGCAGTACGAAAAAAAAATTTTGGGTGCTGGC
CTGTCAATGGCCGACACCAACAATACGAAAAAAAACTTT
Found at i:24389412 original size:31 final size:31
Alignment explanation
Indices: 24389348--24389416 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
24389338 TATTAAAAAT
* *
24389348 AGAAAAATTTAAAAATAAAAGAAATATTTAC
1 AGAAAAATTTAAAAATAAAAGAAAAATTAAC
* *
24389379 AGAATAATTTTAAAAT-AAAGTAAAAATTAAC
1 AGAAAAATTTAAAAATAAAAG-AAAAATTAAC
24389410 AGAAAAA
1 AGAAAAA
24389417 AATTAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (31 bp):
AGAAAAATTTAAAAATAAAAGAAAAATTAAC
Found at i:24391574 original size:33 final size:33
Alignment explanation
Indices: 24391497--24391575 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
24391487 ATGGAGTGAT
**
24391497 CGGTGGTCGTCAACGGTGGTTGAAGGTGAACAA
1 CGGTGGTCGTCGGCGGTGGTTGAAGGTGAACAA
**
24391530 CGGTGGTCGTCGGCGGTGGTTG-AGGATGAACCG
1 CGGTGGTCGTCGGCGGTGGTTGAAGG-TGAACAA
24391563 CGGTGGTCGTCGG
1 CGGTGGTCGTCGG
24391576 AATTGCCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 3 0.07
33 38 0.93
ACGTcount: A:0.15, C:0.18, G:0.46, T:0.22
Consensus pattern (33 bp):
CGGTGGTCGTCGGCGGTGGTTGAAGGTGAACAA
Found at i:24391974 original size:14 final size:13
Alignment explanation
Indices: 24391957--24391994 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
24391947 TAATTTCATT
24391957 TTTTTCATTTAATA
1 TTTTTCATTTAA-A
24391971 TTTTT-ATTTAAA
1 TTTTTCATTTAAA
24391983 TATTTTCATTTA
1 T-TTTTCATTTA
24391995 TTTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 10 0.45
14 10 0.45
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTTCATTTAAA
Found at i:24392000 original size:14 final size:14
Alignment explanation
Indices: 24391958--24392000 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
24391948 AATTTCATTT
24391958 TTTTCATTTA-ATA
1 TTTTCATTTATATA
* *
24391971 TTTTTATTTAAATA
1 TTTTCATTTATATA
*
24391985 TTTTCATTTATTTA
1 TTTTCATTTATATA
24391999 TT
1 TT
24392001 ATTTTTGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTCATTTATATA
Found at i:24392225 original size:10 final size:10
Alignment explanation
Indices: 24392210--24392243 Score: 59
Period size: 10 Copynumber: 3.3 Consensus size: 10
24392200 TCAACCTTTT
24392210 TTTTATTTCA
1 TTTTATTTCA
24392220 TTTTATTTCA
1 TTTTATTTCA
24392230 TTTTTATTTCA
1 -TTTTATTTCA
24392241 TTT
1 TTT
24392244 CATTCAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTATTTCA
Found at i:24392234 original size:11 final size:11
Alignment explanation
Indices: 24392209--24392243 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
24392199 TTCAACCTTT
24392209 TTTTTATTTCA
1 TTTTTATTTCA
24392220 -TTTTATTTCA
1 TTTTTATTTCA
24392230 TTTTTATTTCA
1 TTTTTATTTCA
24392241 TTT
1 TTT
24392244 CATTCAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTATTTCA
Found at i:24392244 original size:5 final size:5
Alignment explanation
Indices: 24392214--24392287 Score: 51
Period size: 5 Copynumber: 13.8 Consensus size: 5
24392204 CCTTTTTTTT
* *
24392214 ATTTC ATTTT ATTTC ATTTTT ATTTC ATTTC A-TTC AAATTTC ATTTCC
1 ATTTC ATTTC ATTTC A-TTTC ATTTC ATTTC ATTTC --ATTTC ATTT-C
* *
24392262 ATTACC ATTTCC CTTTC ATTTC ATTT
1 ATT-TC ATTT-C ATTTC ATTTC ATTT
24392288 AAAAAATATA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
4 3 0.06
5 31 0.57
6 17 0.31
7 3 0.06
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTTC
Found at i:24392328 original size:21 final size:21
Alignment explanation
Indices: 24392296--24392397 Score: 63
Period size: 20 Copynumber: 5.0 Consensus size: 21
24392286 TTAAAAAATA
24392296 TATTTTTT-TCAATTTCAATT
1 TATTTTTTCTCAATTTCAATT
24392316 TATTTTTTCTCAA-TTC-ATT
1 TATTTTTTCTCAATTTCAATT
* * *
24392335 TATATTATTTTTTAATTTAAATT
1 TAT-TT-TTTCTCAATTTCAATT
*
24392358 TAACTTTTTCCTC-ATTTC-ATT
1 T-A-TTTTTTCTCAATTTCAATT
** *
24392379 TAAATTTTCT-ATTTTCAAT
1 TATTTTTTCTCAATTTCAAT
24392398 GCAAATTTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
19 15 0.24
20 16 0.26
21 14 0.23
22 6 0.10
23 7 0.11
24 3 0.05
25 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTTCTCAATTTCAATT
Found at i:24392335 original size:19 final size:20
Alignment explanation
Indices: 24392296--24392359 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
24392286 TTAAAAAATA
24392296 TATTTTTTTCAATTTCAATT
1 TATTTTTTTCAATTTCAATT
*
24392316 TATTTTTTCTCAA-TTCATTT
1 TATTTTTT-TCAATTTCAATT
* *
24392336 ATATTATTTTTTAATTTAAATT
1 -TATT-TTTTTCAATTTCAATT
24392358 TA
1 TA
24392360 ACTTTTTCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
20 14 0.39
21 13 0.36
22 9 0.25
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTTTTCAATTTCAATT
Found at i:24392339 original size:41 final size:43
Alignment explanation
Indices: 24392294--24392431 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 43
24392284 ATTTAAAAAA
*
24392294 TATATT-TTTTTCAATTTCAATTTA-TTTTTTCTCAATTCATT
1 TATATTATTTTTCAATTTCAATTTACTTTTTTCTCATTTCATT
* * *
24392335 TATATTATTTTTTAATTTAAATTTAACTTTTTCCTCATTTCATT
1 TATATTATTTTTCAATTTCAATTT-ACTTTTTTCTCATTTCATT
* * * *
24392379 TAAATTTTCTATTTTCAA-TGCAAATTTATTTTTTTCTCATTTCATTT
1 T--ATATTAT-TTTTCAATTTC-AATTTACTTTTTTCTCATTTCA-TT
24392426 TATATT
1 TATATT
24392432 TAAATTTTCT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
41 6 0.08
42 15 0.19
43 1 0.01
44 16 0.21
45 4 0.05
46 21 0.27
47 14 0.18
ACGTcount: A:0.26, C:0.12, G:0.01, T:0.62
Consensus pattern (43 bp):
TATATTATTTTTCAATTTCAATTTACTTTTTTCTCATTTCATT
Found at i:24392413 original size:27 final size:27
Alignment explanation
Indices: 24392383--24392462 Score: 76
Period size: 26 Copynumber: 3.0 Consensus size: 27
24392373 TTCATTTAAA
*
24392383 TTTTCTATTTTCAATGCAAATTTATTT
1 TTTTCTATTTTCAATTCAAATTTATTT
* * * **
24392410 TTTTCTCA-TTTCATTTTATATTTA-AA
1 TTTTCT-ATTTTCAATTCAAATTTATTT
24392436 TTTTCTATTTTCAATTCAAATTT-TTT
1 TTTTCTATTTTCAATTCAAATTTATTT
24392462 T
1 T
24392463 CTCCTCATTT
Statistics
Matches: 39, Mismatches: 11, Indels: 7
0.68 0.19 0.12
Matches are distributed among these distances:
25 1 0.03
26 19 0.49
27 18 0.46
28 1 0.03
ACGTcount: A:0.25, C:0.11, G:0.01, T:0.62
Consensus pattern (27 bp):
TTTTCTATTTTCAATTCAAATTTATTT
Found at i:24392425 original size:20 final size:20
Alignment explanation
Indices: 24392296--24392425 Score: 57
Period size: 22 Copynumber: 6.0 Consensus size: 20
24392286 TTAAAAAATA
*
24392296 TATTTTTTTC-AATTTCAATT
1 TATTTTTTTCTCATTTC-ATT
*
24392316 TA-TTTTTTCTCAATTCATT
1 TATTTTTTTCTCATTTCATT
* * *
24392335 TATATTATTTTTTAATTTAAATT
1 TAT-TT-TTTTCTCATTT-CATT
* *
24392358 TAACTTTTTCCTCATTTCATT
1 T-ATTTTTTTCTCATTTCATT
* * *
24392379 TAAATTTTCTATTTTCAATGCAAATT
1 T--ATTTT-T-TTCTCATTTC--ATT
24392405 TATTTTTTTCTCATTTCATT
1 TATTTTTTTCTCATTTCATT
24392425 T
1 T
24392426 TATATTTAAA
Statistics
Matches: 80, Mismatches: 19, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
19 12 0.15
20 10 0.12
21 6 0.08
22 28 0.35
23 8 0.10
24 12 0.15
26 4 0.05
ACGTcount: A:0.25, C:0.12, G:0.01, T:0.62
Consensus pattern (20 bp):
TATTTTTTTCTCATTTCATT
Found at i:24395465 original size:50 final size:50
Alignment explanation
Indices: 24395389--24395880 Score: 363
Period size: 50 Copynumber: 9.9 Consensus size: 50
24395379 TTGATAAATT
* *
24395389 TGGTGCTGGTCATTGACAGGCCAGCACTCAAAAATTTTTTTTTCGTA-TAC
1 TGGTGCAGGCCATTGACAGGCCAGCAC-CAAAAATTTTTTTTTCGTACTAC
* * * * *
24395439 TGGTGCAGGGCATTGATAGGCTAGCACCCAACAA--TTTTTTTCGTA-TAT
1 TGGTGCAGGCCATTGACAGGCCAGCA-CCAAAAATTTTTTTTTCGTACTAC
*
24395487 TGGTGCTA-GCCATTGACAGGCCAACACCAACAAA--TTTTTTTCGTA-TAC
1 TGGTGC-AGGCCATTGACAGGCCAGCACCAA-AAATTTTTTTTTCGTACTAC
* * * *
24395535 TGTTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTTCGTACTGC
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTACTAC
* ** * * *
24395585 TGGTGCTGGTTATTGACAGGCCAACACCCAAACAAAAATTTTTTTTCGTACTAG
1 TGGTGCAGGCCATTGACAGGCCAGCA-CC--A-AAAATTTTTTTTTCGTACTAC
* *** *
24395639 TGTTGCCA-ATTATTGACAGGCTAGCACCCAAAAATTCTTTTTTTTCGTACTAC
1 TGGTG-CAGGCCATTGACAGGCCAGCA-CCAAAAA-T-TTTTTTTTCGTACTAC
* * * *
24395692 AGGTG-ACGGCCATTGATAGGCCAGCATC---AATTTTTTTTT-GTATTAC
1 TGGTGCA-GGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTACTAC
* ** * * * * **
24395738 CGGTGTTGGCCATTGACAAGCTAGCACC-CAAATTTTTTTTTTGTACTGG
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTACTAC
** * *
24395787 TGGTGCCCGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTCGTACTGC
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTACTAC
* *
24395837 TGGTGCAGGCCATTGACAGGCCTGCACC--CAA-TTTTTTTTCGTAC
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTAC
24395881 CCAAATTTTT
Statistics
Matches: 357, Mismatches: 64, Indels: 45
0.77 0.14 0.10
Matches are distributed among these distances:
46 27 0.08
47 27 0.08
48 88 0.25
49 40 0.11
50 93 0.26
51 8 0.02
52 2 0.01
53 32 0.09
54 39 0.11
55 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (50 bp):
TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTTCGTACTAC
Found at i:24395635 original size:54 final size:53
Alignment explanation
Indices: 24395569--24395690 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 53
24395559 CACCAAAATT
***
24395569 TTTTTTTTCGTACT-GCTGGTGCTGGTTATTGACAGGCCAACACCCAAACAAAAA
1 TTTTTTTTCGTACTAG-TGGTGCCAATTATTGACAGGCCAACACCCAAA-AAAAA
* * * ***
24395623 TTTTTTTTCGTACTAGTGTTGCCAATTATTGACAGGCTAGCACCCAAAAATTC
1 TTTTTTTTCGTACTAGTGGTGCCAATTATTGACAGGCCAACACCCAAAAAAAA
24395676 TTTTTTTTCGTACTA
1 TTTTTTTTCGTACTA
24395691 CAGGTGACGG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 17 0.29
54 40 0.69
55 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (53 bp):
TTTTTTTTCGTACTAGTGGTGCCAATTATTGACAGGCCAACACCCAAAAAAAA
Found at i:24395778 original size:49 final size:49
Alignment explanation
Indices: 24395389--24395875 Score: 294
Period size: 48 Copynumber: 9.8 Consensus size: 49
24395379 TTGATAAATT
* * * * *
24395389 TGGTGCTGGTCATTGACAGGCCAGCACTCAAAAATTTTTTTTTCGTA-TAC
1 TGGTGCCGGCCATTGACAGGCTAGCAC-C-CAAATTTTTTTTTTGTACTAC
* * * * * *
24395439 TGGTGCAGGGCATTGATAGGCTAGCACCCAACA-ATTTTTTTCGTA-TAT
1 TGGTGCCGGCCATTGACAGGCTAGCACCCAA-ATTTTTTTTTTGTACTAC
** * * *
24395487 TGGTGCTAGCCATTGACAGGCCAACACCAACAAA--TTTTTTTCGTA-TAC
1 TGGTGCCGGCCATTGACAGGCTAGCACC--CAAATTTTTTTTTTGTACTAC
* * * *
24395535 TGTTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTTCGTACTGC
1 TGGTGCCGGCCATTGACAGGCTAGCACCCAAATTTTTTTTTT-GTACTAC
* ** * * * * *
24395585 TGGTGCTGGTTATTGACAGGCCAACACCCAAACAAAAATTTTTTTTCGTACTAG
1 TGGTGCCGGCCATTGACAGGCTAGCA-CC---C-AAATTTTTTTTTTGTACTAC
* ****
24395639 TGTTGCCAATTATTGACAGGCTAGCACCCAAAAATTCTTTTTTTTCGTACTAC
1 TGGTGCCGGCCATTGACAGGCTAGCACCC--AAATT-TTTTTTTT-GTACTAC
* * * * * *
24395692 AGGTGACGGCCATTGATAGGCCAGCA-TC-AA-TTTTTTTTTGTATTAC
1 TGGTGCCGGCCATTGACAGGCTAGCACCCAAATTTTTTTTTTGTACTAC
* ** * **
24395738 CGGTGTTGGCCATTGACAAGCTAGCACCCAAATTTTTTTTTTGTACTGG
1 TGGTGCCGGCCATTGACAGGCTAGCACCCAAATTTTTTTTTTGTACTAC
* * * *
24395787 TGGTGCCCGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTCGTACTGC
1 TGGTGCCGGCCATTGACAGGCTAGCACCC-AAATTTTTTTTTTGTACTAC
*
24395837 TGGTGCAGGCCATTGACAGGCCT-GCACCC-AATTTTTTTT
1 TGGTGCCGGCCATTGACAGG-CTAGCACCCAAATTTTTTTT
24395876 CGTACCCAAA
Statistics
Matches: 345, Mismatches: 72, Indels: 42
0.75 0.16 0.09
Matches are distributed among these distances:
46 29 0.08
47 9 0.03
48 94 0.27
49 44 0.13
50 92 0.27
51 8 0.02
52 8 0.02
53 25 0.07
54 25 0.07
55 11 0.03
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (49 bp):
TGGTGCCGGCCATTGACAGGCTAGCACCCAAATTTTTTTTTTGTACTAC
Found at i:24395824 original size:95 final size:98
Alignment explanation
Indices: 24395650--24395825 Score: 216
Period size: 95 Copynumber: 1.8 Consensus size: 98
24395640 GTTGCCAATT
* * *
24395650 ATTGACAGGCTAGCACCCAAAAATTCTTTTTTTTCGTACTACAGGTGACGGCCATTGATAGGCCA
1 ATTGACAAGCTAGCACCC-AAAATTCTTTTTTTTCGTACTACAGGTGACCGCCATTGACAGGCCA
* **
24395715 GCATCAATTTTTTTTTGTATTACCGGTGTTGGCC
65 GCACCAATAATTTTTTGTATTACCGGTGTTGGCC
*** *
24395749 ATTGACAAGCTAGCACCC-AAATT-TTTTTTTT-GTACTGGTGGTGCCCGCCATTGACAGGCCAG
1 ATTGACAAGCTAGCACCCAAAATTCTTTTTTTTCGTACTACAGGTGACCGCCATTGACAGGCCAG
24395811 CACCCAA-AATTTTTT
66 CA-CCAATAATTTTTT
24395826 TTTCGTACTG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
95 33 0.50
96 11 0.17
97 5 0.08
99 17 0.26
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (98 bp):
ATTGACAAGCTAGCACCCAAAATTCTTTTTTTTCGTACTACAGGTGACCGCCATTGACAGGCCAG
CACCAATAATTTTTTGTATTACCGGTGTTGGCC
Found at i:24395854 original size:252 final size:249
Alignment explanation
Indices: 24395400--24395867 Score: 588
Period size: 252 Copynumber: 1.9 Consensus size: 249
24395390 GGTGCTGGTC
* * * *
24395400 ATTGACAGGCCAGCACTCAAAAATTTTTTTTTCGTATACTGGTGCAGGGCATTGATAGGCTAGCA
1 ATTGACAGGCCAGCACCCAAAAATTTTTTTTTCGTATACAGGTGCAGGCCATTGATAGGCCAGCA
** *
24395465 CCCAACAATTTTTTTCGTATATTGGTGCTAGCCATTGACAGGCCAACACCAACAAATTTTTTTCG
66 CCCAACAATTTTTTTCGTATACCGGTGCTAGCCATTGACAAGCCAACACC-ACAAATTTTTTTCG
* * *
24395530 TATACTGTTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTTTCGTACTGCTGGTGCTGGT
130 TATACTGTTGCCCGCCATTGACAGGCCAGCACCAAAATTTTTTTTTTCGTACTGCTGGTGCAGGC
*
24395595 TATTGACAGGCCAACACCCAAACAAAAATTTTTTTTCGTACTAGTGTTGCCAATT
195 CATTGACAGGCCAACACCCAAACAAAAATTTTTTTTCGTACTAGTGTTGCCAATT
*
24395650 ATTGACAGGCTAGCACCCAAAAATTCTTTTTTTTCGTACTACAGGTG-ACGGCCATTGATAGGCC
1 ATTGACAGGCCAGCACCCAAAAA-T-TTTTTTTTCGTA-TACAGGTGCA-GGCCATTGATAGGCC
* * * * * * *
24395714 AGCA-TC-A-ATTTTTTTTTGTATTACCGGTGTTGGCCATTGACAAGCTAGCACC-CAAATTTTT
62 AGCACCCAACAATTTTTTTCGTA-TACCGGTGCTAGCCATTGACAAGCCAACACCACAAATTTTT
** *
24395775 TTTTTGTACTGGTGGTGCCCGCCATTGACAGGCCAGCACCCAAAA-TTTTTTTTTCGTACTGCTG
126 TTCGTATACT-GT--TGCCCGCCATTGACAGGCCAGCA-CCAAAATTTTTTTTTTCGTACTGCTG
**
24395839 GTGCAGGCCATTGACAGGCCTGCACCCAA
187 GTGCAGGCCATTGACAGGCCAACACCCAA
24395868 TTTTTTTTCG
Statistics
Matches: 185, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
249 16 0.09
250 34 0.18
251 26 0.14
252 79 0.43
253 30 0.16
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (249 bp):
ATTGACAGGCCAGCACCCAAAAATTTTTTTTTCGTATACAGGTGCAGGCCATTGATAGGCCAGCA
CCCAACAATTTTTTTCGTATACCGGTGCTAGCCATTGACAAGCCAACACCACAAATTTTTTTCGT
ATACTGTTGCCCGCCATTGACAGGCCAGCACCAAAATTTTTTTTTTCGTACTGCTGGTGCAGGCC
ATTGACAGGCCAACACCCAAACAAAAATTTTTTTTCGTACTAGTGTTGCCAATT
Found at i:24395891 original size:116 final size:115
Alignment explanation
Indices: 24395763--24395991 Score: 316
Period size: 116 Copynumber: 2.0 Consensus size: 115
24395753 ACAAGCTAGC
* * * * *
24395763 ACCCAAATTTTTTTTTT-GTACTGGTGGTGCCCGCCATTGACAGGCCAGCACCCAAAATTTTTTT
1 ACCCAAATTTTTTTTTTAATACTGCTGGTGCCAGCCATTGACAAGCCAGCA--CAAAAATTTTTT
* **
24395827 TTCGTACTGCTGGTGCAGGCCATTGACAGGCCTGCACCCAATTTTTTTTCGT
64 TTCGTACTGCTGGTGCAGGCCACTGACAGGCCAACACCCAATTTTTTTTCGT
* *
24395879 ACCCAAATTTTTTTTTTCAATACTGCTGGTGCCAGCCATTGGCAAGCCATCACAAAAATTTTTTT
1 ACCCAAATTTTTTTTTT-AATACTGCTGGTGCCAGCCATTGACAAGCCAGCACAAAAATTTTTTT
* *
24395944 TCGTACTGGTGGTGCCGGCCACTGACAGGCCAACACCCAATTTTTTTT
65 TCGTACTGCTGGTGCAGGCCACTGACAGGCCAACACCCAATTTTTTTT
24395992 TAATTTTTGT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
116 72 0.73
118 27 0.27
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (115 bp):
ACCCAAATTTTTTTTTTAATACTGCTGGTGCCAGCCATTGACAAGCCAGCACAAAAATTTTTTTT
CGTACTGCTGGTGCAGGCCACTGACAGGCCAACACCCAATTTTTTTTCGT
Found at i:24395941 original size:68 final size:68
Alignment explanation
Indices: 24395812--24395949 Score: 174
Period size: 68 Copynumber: 2.0 Consensus size: 68
24395802 ACAGGCCAGC
* * **
24395812 ACCCAAAATTTTTTTTTCGTACTGCTGGTGCAGGCCATTGACAGGCCTGCAC-CCAATTTTTTTT
1 ACCCAAAATTTTTTTTTCATACTGCTGGTGCAGGCCATTGACAAGCCTGCACAAAAATTTTTTTT
24395876 CGT
66 CGT
* *
24395879 ACCCAAATTTTTTTTTTCAATACTGCTGGTGCCA-GCCATTGGCAAGCCAT-CACAAAAATTTTT
1 ACCCAAAATTTTTTTTTC-ATACTGCTGGTG-CAGGCCATTGACAAGCC-TGCACAAAAATTTTT
24395942 TTTCGT
63 TTTCGT
24395948 AC
1 AC
24395950 TGGTGGTGCC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
67 17 0.28
68 26 0.43
69 18 0.30
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (68 bp):
ACCCAAAATTTTTTTTTCATACTGCTGGTGCAGGCCATTGACAAGCCTGCACAAAAATTTTTTTT
CGT
Found at i:24395942 original size:67 final size:67
Alignment explanation
Indices: 24395812--24395942 Score: 151
Period size: 67 Copynumber: 2.0 Consensus size: 67
24395802 ACAGGCCAGC
* * * **
24395812 ACCCAAAATTTTTTTTTCGTACTGCTGGTGCAGGCCATTGACAGGCCTGCACCCAATTTTTTTTC
1 ACCCAAAATTTTTTTTTCATACTGCTGGTGCAGGCCATTGACAAGCCTGCACCAAAAATTTTTTC
24395877 GT
66 GT
* *
24395879 ACCCAAATTTTTTTTTTCAATACTGCTGGTGCCA-GCCATTGGCAAGCCAT-CA-CAAAAATTTT
1 ACCCAAAATTTTTTTTTC-ATACTGCTGGTG-CAGGCCATTGACAAGCC-TGCACCAAAAATTTT
24395941 TT
63 TT
24395943 TTCGTACTGG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
67 26 0.48
68 25 0.46
69 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (67 bp):
ACCCAAAATTTTTTTTTCATACTGCTGGTGCAGGCCATTGACAAGCCTGCACCAAAAATTTTTTC
GT
Found at i:24395989 original size:48 final size:49
Alignment explanation
Indices: 24395882--24395992 Score: 116
Period size: 48 Copynumber: 2.3 Consensus size: 49
24395872 TTTTCGTACC
* * * *
24395882 CAAATTTTTTTTTTCAATACTGCTGGTGCCAGCCATTGGCAAGCCATCA
1 CAAAATTTTTTTTTCAATACTGCTGGTGCCAGCCACTGACAAGCCAACA
* * * * *
24395931 CAAAAATTTTTTTTC-GTACTGGTGGTGCCGGCCACTGACAGGCCAACA
1 CAAAATTTTTTTTTCAATACTGCTGGTGCCAGCCACTGACAAGCCAACA
**
24395979 CCCAATTTTTTTTT
1 CAAAATTTTTTTTT
24395993 AATTTTTGTA
Statistics
Matches: 50, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
48 37 0.74
49 13 0.26
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (49 bp):
CAAAATTTTTTTTTCAATACTGCTGGTGCCAGCCACTGACAAGCCAACA
Found at i:24397420 original size:22 final size:22
Alignment explanation
Indices: 24397395--24397439 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24397385 AATAGTTTTC
24397395 TTTTAAAATAATAAGATTTAAT
1 TTTTAAAATAATAAGATTTAAT
** * *
24397417 TTTTTTAATATTAATATTTAAT
1 TTTTAAAATAATAAGATTTAAT
24397439 T
1 T
24397440 CAATTTTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTTAAAATAATAAGATTTAAT
Found at i:24406263 original size:29 final size:30
Alignment explanation
Indices: 24406230--24406286 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
24406220 TCAAAAAAAT
24406230 AAAATTAAAGCTTTTTTAA-AATAATTTAA
1 AAAATTAAAGCTTTTTTAAGAATAATTTAA
*
24406259 AAAATTAAAGCTTTTTTAAGAGTAATTT
1 AAAATTAAAGCTTTTTTAAGAATAATTT
24406287 GAGAGGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (30 bp):
AAAATTAAAGCTTTTTTAAGAATAATTTAA
Found at i:24406315 original size:12 final size:10
Alignment explanation
Indices: 24406285--24406327 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
24406275 TAAGAGTAAT
*
24406285 TTGAGAGGAA
1 TTGAGAGAAA
24406295 TTCGAGAGAATA
1 TT-GAGAGAA-A
24406307 TTAGAGAGAAA
1 TT-GAGAGAAA
24406318 TTGAGAGAAA
1 TTGAGAGAAA
24406328 GGATTTAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 10 0.34
11 9 0.31
12 10 0.34
ACGTcount: A:0.47, C:0.02, G:0.30, T:0.21
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:24406323 original size:10 final size:11
Alignment explanation
Indices: 24406277--24406327 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
24406267 AGCTTTTTTA
* *
24406277 AGAGTAATTTG
1 AGAGAAATTAG
* *
24406288 AGAGGAATTCG
1 AGAGAAATTAG
24406299 AGAGAATATTAG
1 AGAGAA-ATTAG
24406311 AGAGAAATT-G
1 AGAGAAATTAG
24406321 AGAGAAA
1 AGAGAAA
24406328 GGATTTAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.23
11 17 0.49
12 10 0.29
ACGTcount: A:0.47, C:0.02, G:0.29, T:0.22
Consensus pattern (11 bp):
AGAGAAATTAG
Found at i:24406405 original size:18 final size:17
Alignment explanation
Indices: 24406378--24406421 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
24406368 CAATAATGCC
*
24406378 CGGGCACAAACCAATAAA
1 CGGGCCCAAACC-ATAAA
*
24406396 CGGGCCCAAACCATTAA
1 CGGGCCCAAACCATAAA
*
24406413 CAGGCCCAA
1 CGGGCCCAA
24406422 CAACTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.41, C:0.34, G:0.18, T:0.07
Consensus pattern (17 bp):
CGGGCCCAAACCATAAA
Found at i:24408499 original size:13 final size:13
Alignment explanation
Indices: 24408481--24408505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24408471 AAGAGATTTA
24408481 TTTTCTAGTAAAG
1 TTTTCTAGTAAAG
24408494 TTTTCTAGTAAA
1 TTTTCTAGTAAA
24408506 AAATCGAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
TTTTCTAGTAAAG
Found at i:24410487 original size:22 final size:22
Alignment explanation
Indices: 24410462--24410506 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
24410452 TGAGCAAATG
24410462 TTCTTTCATTCTTTACGATTTT
1 TTCTTTCATTCTTTACGATTTT
**
24410484 TTCTTTCATTCTTTTGGATTTT
1 TTCTTTCATTCTTTACGATTTT
24410506 T
1 T
24410507 CTGCCAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.16, G:0.07, T:0.67
Consensus pattern (22 bp):
TTCTTTCATTCTTTACGATTTT
Found at i:24412788 original size:44 final size:43
Alignment explanation
Indices: 24412738--24412919 Score: 106
Period size: 44 Copynumber: 4.1 Consensus size: 43
24412728 CAGATTTTAC
24412738 CTCCCTGAGGTTACAGTGAAGTACATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGG-TACAGTGAAGTACATTGAAGCCAGTAATTCTAT
* * *
24412782 CTCCCTG-GGTAGCAGTGGAA-TAGATTGAAG--ATTACAGATCTTAT
1 CTCCCTGAGGTA-CAGT-GAAGTACATTGAAGCCAGTA-A-TTC-TAT
* * * * *** * * *
24412826 CTCCCTAAGCAGT--AGTGGAGCAGATTGAAGATGGTGGATTTTAC
1 CTCCCTGAG--GTACAGTGAAGTACATTGAAGCCAGT-AATTCTAT
*
24412870 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGG-TACAGTGAAGTACATTGAAGCCAGTAATTCTAT
24412914 CTCCCT
1 CTCCCT
24412920 AGGCAGCAGT
Statistics
Matches: 102, Mismatches: 21, Indels: 30
0.67 0.14 0.20
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 20 0.20
44 52 0.51
45 19 0.19
46 2 0.02
47 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
CTCCCTGAGGTACAGTGAAGTACATTGAAGCCAGTAATTCTAT
Found at i:24412959 original size:44 final size:44
Alignment explanation
Indices: 24412779--24412969 Score: 138
Period size: 44 Copynumber: 4.3 Consensus size: 44
24412769 CCAGTAATTC
* *
24412779 TATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * ** **** *
24412823 TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGTGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *
24412867 TACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
* *
24412911 TATCTCCCTAGGCAGCAGTGGAATATATTAAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
*
24412955 TATCTCCCTAAGCAG
1 TATCTCCCTAGGCAG
24412970 TAGTAGAGCA
Statistics
Matches: 108, Mismatches: 31, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 20 0.19
44 63 0.58
45 18 0.17
46 1 0.01
47 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:24412960 original size:132 final size:131
Alignment explanation
Indices: 24412730--24413064 Score: 537
Period size: 132 Copynumber: 2.5 Consensus size: 131
24412720 GTTGATGGCA
* *
24412730 GATTTTACCTCCCTGAGGTTACAGTGAAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGC
1 GATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT-GGCAGC
* * *
24412795 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA-GATG
65 AGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGA-TCAAGGATG
**
24412859 GTG
129 ACG
24412862 GATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAGC
1 GATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT-GGCAGC
*
24412927 AGTGGAATATATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAGGATGA
65 AGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAGGATGA
24412992 CG
130 CG
* *
24412994 GATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAGCAAC
1 GATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTG-GCAGC
24413059 AGTGGA
65 AGTGGA
24413065 GTAGCAGTAG
Statistics
Matches: 190, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
131 4 0.02
132 186 0.98
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (131 bp):
GATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGCAGCA
GTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAGGATGAC
G
Found at i:24413226 original size:89 final size:89
Alignment explanation
Indices: 24413073--24413512 Score: 702
Period size: 89 Copynumber: 5.0 Consensus size: 89
24413063 GAGTAGCAGT
** *
24413073 AGATCTTGTCTTCATGTACTGGCACGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
*
24413138 GTGGCGAAGTAGATCGAAGAAAAC
66 GTGGCGAAGTAGATCGAAGAAAGC
* * *
24413162 ATATCTTGTCTTCATGTACTAGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
* *
24413227 GTGGCGAAGCAGATAGAAGAAAGC
66 GTGGCGAAGTAGATCGAAGAAAGC
*
24413251 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
* *
24413316 GTGGCGAAGCAGATAGAAGAAAGC
66 GTGGCGAAGTAGATCGAAGAAAGC
* * *
24413340 AGATCTTGTCTTCATGTACTTGCGTGAAGTAGATCAAAGAGAACATATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
*
24413405 GTGGCGAAGTGGATCGAAGAAAGC
66 GTGGCGAAGTAGATCGAAGAAAGC
* * *
24413429 AGATCTTGTCTTTATGTACTGGCGTGAAGTAGATCAAAGAGAGCAGATCTTGTCTTCCCATA-TG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
24413493 GTGGCGAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGA
24413513 TACAAGTTTT
Statistics
Matches: 328, Mismatches: 23, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
88 21 0.06
89 307 0.94
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
GTGGCGAAGTAGATCGAAGAAAGC
Found at i:24414227 original size:18 final size:17
Alignment explanation
Indices: 24414200--24414243 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
24414190 CAATAATGTC
*
24414200 CGGGCACAAACCAATAAA
1 CGGGCCCAAACC-ATAAA
*
24414218 CGGGCCCAAACCATTAA
1 CGGGCCCAAACCATAAA
*
24414235 CAGGCCCAA
1 CGGGCCCAA
24414244 CAACTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.41, C:0.34, G:0.18, T:0.07
Consensus pattern (17 bp):
CGGGCCCAAACCATAAA
Found at i:24415519 original size:16 final size:16
Alignment explanation
Indices: 24415498--24415531 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24415488 TATTGTACAT
* *
24415498 ATATATATGTATTTGA
1 ATATATACGTATATGA
24415514 ATATATACGTATATGA
1 ATATATACGTATATGA
24415530 AT
1 AT
24415532 TTTCACGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (16 bp):
ATATATACGTATATGA
Found at i:24418916 original size:20 final size:19
Alignment explanation
Indices: 24418859--24418927 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 19
24418849 AAAAATATTT
24418859 TTTAAAATACTAATTATAAATA
1 TTTAAAATA-T-ATT-TAAATA
**
24418881 TTTAATGTTATATTTAAATA
1 TTTAA-AATATATTTAAATA
*
24418901 TTTAAAATATAGTTTATATA
1 TTTAAAATATA-TTTAAATA
24418921 TTCTAAA
1 TT-TAAA
24418928 TAATTAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 4 0.10
20 20 0.51
21 7 0.18
22 6 0.15
23 2 0.05
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (19 bp):
TTTAAAATATATTTAAATA
Found at i:24419175 original size:13 final size:13
Alignment explanation
Indices: 24419159--24419208 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
24419149 TTTAAACCAA
*
24419159 ACTTTTCAAAATC
1 ACTTTTTAAAATC
*
24419172 ACTTCTTAAAAGT-
1 ACTTTTTAAAA-TC
*
24419185 ACTTTTTAAAAGC
1 ACTTTTTAAAATC
24419198 ACTTTTTAAAA
1 ACTTTTTAAAA
24419209 AAATGATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 30 0.97
14 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
ACTTTTTAAAATC
Found at i:24419189 original size:26 final size:26
Alignment explanation
Indices: 24419159--24419208 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
24419149 TTTAAACCAA
*
24419159 ACTTTTCAAAATCACTTCTTAAAAGT
1 ACTTTTCAAAAGCACTTCTTAAAAGT
* *
24419185 ACTTTTTAAAAGCACTTTTTAAAA
1 ACTTTTCAAAAGCACTTCTTAAAA
24419209 AAATGATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTTAAAAGT
Found at i:24420066 original size:22 final size:23
Alignment explanation
Indices: 24420041--24420096 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 23
24420031 TAAATGTGTT
24420041 AAAATTATTAATTAAAAATAA-A
1 AAAATTATTAATTAAAAATAATA
* *
24420063 AAAAATATT--TTTAAAATAATA
1 AAAATTATTAATTAAAAATAATA
*
24420084 CAAATGTATTAAT
1 AAAAT-TATTAAT
24420097 ATCTAATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
20 9 0.35
21 4 0.15
22 12 0.46
24 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
AAAATTATTAATTAAAAATAATA
Found at i:24420216 original size:24 final size:24
Alignment explanation
Indices: 24420163--24420216 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
24420153 TTCTAATTAA
* *
24420163 ATTTTATAAATAATTAATATTTAT
1 ATTTTAAAAATAATTAAAATTTAT
*
24420187 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTAAAAATAATTAAAATTTAT
24420211 ATTTTA
1 ATTTTA
24420217 TATATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTAAAAATAATTAAAATTTAT
Found at i:24420343 original size:20 final size:20
Alignment explanation
Indices: 24420318--24420355 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24420308 TTTGTTACTT
24420318 AATATTATATATCTAAAATA
1 AATATTATATATCTAAAATA
* *
24420338 AATATTTTATTTCTAAAA
1 AATATTATATATCTAAAA
24420356 GTATTTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
AATATTATATATCTAAAATA
Found at i:24420610 original size:18 final size:18
Alignment explanation
Indices: 24420584--24420618 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24420574 GAGTTAAACG
*
24420584 AATCGAGTTATTCGAGTT
1 AATCAAGTTATTCGAGTT
24420602 AATCAAGTTATTCGAGT
1 AATCAAGTTATTCGAGT
24420619 CAACTCGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37
Consensus pattern (18 bp):
AATCAAGTTATTCGAGTT
Found at i:24420686 original size:9 final size:9
Alignment explanation
Indices: 24420669--24420723 Score: 92
Period size: 9 Copynumber: 6.1 Consensus size: 9
24420659 TGAATTTTCG
24420669 AATTCGAAT
1 AATTCGAAT
*
24420678 AACTCGAAT
1 AATTCGAAT
*
24420687 AACTCGAAT
1 AATTCGAAT
24420696 AATTCGAAT
1 AATTCGAAT
24420705 AATTCGAAT
1 AATTCGAAT
24420714 AATTCGAAT
1 AATTCGAAT
24420723 A
1 A
24420724 TCAAACTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:24427419 original size:154 final size:154
Alignment explanation
Indices: 24427139--24427443 Score: 592
Period size: 154 Copynumber: 2.0 Consensus size: 154
24427129 AATTTTTGGT
*
24427139 AATCAAACCGAAAATATTGCTACAAATGAAATAAAATCTGAAAATTTAGGAGAATCATCTACTCA
1 AATCAAACCGAAAATATTGCTACAAATGAAATAAAATCTGAAAATTTAGGAAAATCATCTACTCA
24427204 ACCAGTTCCATATAGAATAGATGATCTAAACAAAAGAAATGATGTTCAATGAGGAATATATTTAG
66 ACCAGTTCCATATAGAATAGATGATCTAAACAAAAGAAATGATGTTCAATGAGGAATATATTTAG
24427269 ATCTAACTAATATTCCTATAGCAA
131 ATCTAACTAATATTCCTATAGCAA
*
24427293 AATCAAACCGACAATATTGCTACAAATGAAATAAAATCTGAAAATTTAGGAAAATCATCTACTCA
1 AATCAAACCGAAAATATTGCTACAAATGAAATAAAATCTGAAAATTTAGGAAAATCATCTACTCA
24427358 ACCAGTTCCATATAGAATAGATGATCTAAACAAAAGAAATGATGTTCAATGAGGAATATATTTAG
66 ACCAGTTCCATATAGAATAGATGATCTAAACAAAAGAAATGATGTTCAATGAGGAATATATTTAG
24427423 ATCTAACTAATATTCCTATAG
131 ATCTAACTAATATTCCTATAG
24427444 TAGACTATGA
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 149 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (154 bp):
AATCAAACCGAAAATATTGCTACAAATGAAATAAAATCTGAAAATTTAGGAAAATCATCTACTCA
ACCAGTTCCATATAGAATAGATGATCTAAACAAAAGAAATGATGTTCAATGAGGAATATATTTAG
ATCTAACTAATATTCCTATAGCAA
Found at i:24430059 original size:42 final size:43
Alignment explanation
Indices: 24429969--24430107 Score: 140
Period size: 42 Copynumber: 3.2 Consensus size: 43
24429959 CTCCTAGATT
* * *
24429969 TGGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAAACA
1 TGGTCTTACACGTAATCAAATATCGATGCCAATGTACCAAACA
* *
24430012 GGGTCTTACACG-AAGTCAAATA-CGATGCCAATGTACCAGACA
1 TGGTCTTACACGTAA-TCAAATATCGATGCCAATGTACCAAACA
* * * *
24430054 TGGTCTTACACGTAATTCTCAA-ATCGATGCCAACGTCCCAAACG
1 TGGTCTTACACGTAA-TC-AAATATCGATGCCAATGTACCAAACA
*
24430098 TGGTTTTACA
1 TGGTCTTACA
24430108 TGAAATCACA
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.38
43 22 0.28
44 27 0.34
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGTAATCAAATATCGATGCCAATGTACCAAACA
Found at i:24434350 original size:26 final size:26
Alignment explanation
Indices: 24434321--24434372 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24434311 AGTAATAATG
24434321 ACGCAGCAA-AGCTGCCAATAACAGTA
1 ACGCAGCAAGA-CTGCCAATAACAGTA
*
24434347 ACGCAGCAAGACTGCCAGTAACAGTA
1 ACGCAGCAAGACTGCCAATAACAGTA
24434373 TATGTGGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.40, C:0.27, G:0.21, T:0.12
Consensus pattern (26 bp):
ACGCAGCAAGACTGCCAATAACAGTA
Found at i:24434581 original size:27 final size:27
Alignment explanation
Indices: 24434551--24434849 Score: 318
Period size: 27 Copynumber: 11.1 Consensus size: 27
24434541 ACAGTTATTC
*
24434551 TACCCATCAAGGGTATTTCGGTCATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* * * *
24434578 TACCCATCGAGAGTATTTCAATAATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* *
24434605 TACCCGTCAAGGGCATTTCGATCATTT
1 TACCCATCAAGGGTATTTCGATCATTT
24434632 TACCCATCAAGGGTATTTCGATCATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* **
24434659 TACCCTTCGGGGGTATTTC-ATTCATTT
1 TACCCATCAAGGGTATTTCGA-TCATTT
*
24434686 TACCTATCAAGGGTATTTC-AGTCATTT
1 TACCCATCAAGGGTATTTCGA-TCATTT
*
24434713 TACCCATCAAGGGTATTTCAATCATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* * *
24434740 TACCCTTCAAGGGTATTTCAATAATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* ** *
24434767 TACCCTTTGAGGGTATTTCGGTCATTT
1 TACCCATCAAGGGTATTTCGATCATTT
* *
24434794 TACCCTTCGA-GGTAATTTCGATCATTT
1 TACCCATCAAGGGT-ATTTCGATCATTT
** *
24434821 TACCCATTGAGGGTGATTT-GGTCATTT
1 TACCCATCAAGGGT-ATTTCGATCATTT
24434848 TA
1 TA
24434850 GGCCCATTAC
Statistics
Matches: 233, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.02
27 221 0.95
28 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (27 bp):
TACCCATCAAGGGTATTTCGATCATTT
Found at i:24434849 original size:81 final size:81
Alignment explanation
Indices: 24434551--24434839 Score: 377
Period size: 81 Copynumber: 3.6 Consensus size: 81
24434541 ACAGTTATTC
* * * *
24434551 TACCCATCAAGGGTATTTCGGTCATTTTACCCATCGAGAGTATTTCAATAATTTTACCCGTCAAG
1 TACCCATCAAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCTTCAAG
* *
24434616 GGCATTTCGATCATTT
66 GGTATTTCGGTCATTT
* * *
24434632 TACCCATCAAGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCATTCATTTTA-CCTATCAA
1 TACCCATCAAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCT-TCAA
*
24434696 GGGTATTTCAGTCATTT
65 GGGTATTTCGGTCATTT
* * **
24434713 TACCCATCAAGGGTATTTCAATCATTTTACCCTTCAAGGGTATTTCAATAATTTTACCCTTTGAG
1 TACCCATCAAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCTTCAAG
24434778 GGTATTTCGGTCATTT
66 GGTATTTCGGTCATTT
* *
24434794 TACCCTTCGA-GGTAATTTCGATCATTTTACCCATT-GAGGGTGATTT
1 TACCCATCAAGGGT-ATTTCGATCATTTTACCC-TTCGAGGGT-ATTT
24434840 GGTCATTTTA
Statistics
Matches: 181, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
80 5 0.03
81 167 0.92
82 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (81 bp):
TACCCATCAAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCTTCAAG
GGTATTTCGGTCATTT
Found at i:24440295 original size:43 final size:43
Alignment explanation
Indices: 24440244--24440339 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 43
24440234 TCCCAAACGT
24440244 GGTCTTACATGGAA-TCAAATATCGATGAC-ACTGTCCCAGACAG
1 GGTCTTACATGGAAGTCAAATA-CGATGACGA-TGTCCCAGACAG
* * * *
24440287 GGTTTTACA-CGAAGTCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGGAAGTCAAATACGATGACGATGTCCCAGACAG
24440329 GGTCTTACATG
1 GGTCTTACATG
24440340 TAATTATCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGGAAGTCAAATACGATGACGATGTCCCAGACAG
Found at i:24447163 original size:13 final size:13
Alignment explanation
Indices: 24447145--24447181 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
24447135 AGAACGAAAC
24447145 AGAGAAGAAAAAG
1 AGAGAAGAAAAAG
24447158 AGAGAAAGAAAAAG
1 AGAG-AAGAAAAAG
24447172 -GAGAA-AAAAA
1 AGAGAAGAAAAA
24447182 ATTAGGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 5 0.22
12 2 0.09
13 7 0.30
14 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AGAGAAGAAAAAG
Found at i:24447163 original size:25 final size:25
Alignment explanation
Indices: 24447122--24447182 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
24447112 GAATAGAAAA
* * *
24447122 AGAAGAACAAAGTAGAACGAAACA-G
1 AGAAGAA-AAAGGAGAAAGAAAAAGG
24447147 AGAAGAAAAAGAGAGAAAGAAAAAGG
1 AGAAGAAAAAG-GAGAAAGAAAAAGG
*
24447173 AGAAAAAAAA
1 AGAAGAAAAA
24447183 TTAGGGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.13
25 16 0.53
26 10 0.33
ACGTcount: A:0.69, C:0.05, G:0.25, T:0.02
Consensus pattern (25 bp):
AGAAGAAAAAGGAGAAAGAAAAAGG
Found at i:24447168 original size:14 final size:14
Alignment explanation
Indices: 24447145--24447182 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
24447135 AGAACGAAAC
24447145 AGAG-AAGAAAAAG
1 AGAGAAAGAAAAAG
24447158 AGAGAAAGAAAAAG
1 AGAGAAAGAAAAAG
24447172 -GAGAAA-AAAAA
1 AGAGAAAGAAAAA
24447183 TTAGGGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.21
13 10 0.42
14 9 0.38
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AGAGAAAGAAAAAG
Found at i:24451519 original size:69 final size:71
Alignment explanation
Indices: 24451393--24451523 Score: 185
Period size: 69 Copynumber: 1.9 Consensus size: 71
24451383 GTTCTGGATA
* * *
24451393 TTGTTTTGATAGTCTGCTGGAAAATGTTATTTTAGTTTGTTAGTGAGTAGAAGATGAAACTGTTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
24451458 TGGCAG
66 TGGCAG
* ** *
24451464 TTGTTTTGATTGTCTGCTGGAACTTGTT-CTTGA-TTTGTTAGTCAGTAGAATATGAAACTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTG
24451524 GAACTTTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
69 25 0.47
70 3 0.06
71 25 0.47
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.43
Consensus pattern (71 bp):
TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
TGGCAG
Found at i:24452787 original size:33 final size:33
Alignment explanation
Indices: 24452696--24452813 Score: 125
Period size: 33 Copynumber: 3.6 Consensus size: 33
24452686 GTGAAGTTGT
* *
24452696 TTTTTGGTCAATTATACATACACCAACAATGT-T
1 TTTTAGGTCAATTATACATACACCAACAA-GTAA
* * *
24452729 TTTTAGGGT-AAATA-AAATTAAACCAACAAGTAA
1 TTTTA-GGTCAATTATACA-TACACCAACAAGTAA
* *
24452762 TTTTAGGTCAACTATACATACACCAACAATTAA
1 TTTTAGGTCAATTATACATACACCAACAAGTAA
24452795 TTTTAGGTCAATTATACAT
1 TTTTAGGTCAATTATACAT
24452814 GCTTTATAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
32 7 0.10
33 58 0.83
34 5 0.07
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (33 bp):
TTTTAGGTCAATTATACATACACCAACAAGTAA
Found at i:24455914 original size:26 final size:27
Alignment explanation
Indices: 24455874--24455955 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
24455864 TAAGAACATT
*
24455874 TTATGAAATTATATTTAATAATAATTA
1 TTATTAAATTATATTTAATAATAATTA
* *
24455901 TT-TTAAATTGTATTTAATCATATATT-
1 TTATTAAATTATATTTAATAATA-ATTA
* *
24455927 TTAATTAAAATATATTTAATATTAATTA
1 TT-ATTAAATTATATTTAATAATAATTA
24455955 T
1 T
24455956 AGTATCATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
TTATTAAATTATATTTAATAATAATTA
Found at i:24456037 original size:18 final size:17
Alignment explanation
Indices: 24456009--24456043 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24455999 ATTATTAAGA
*
24456009 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24456026 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24456044 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24456134 original size:120 final size:120
Alignment explanation
Indices: 24455956--24456420 Score: 914
Period size: 120 Copynumber: 3.9 Consensus size: 120
24455946 TATTAATTAT
24455956 AGTATCATATATTATGATTTGAGTAAATT-ATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
24456020 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
24456075 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
24456140 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
*
24456195 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
24456260 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
24456315 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
24456380 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
24456421 TAAATATGAT
Statistics
Matches: 343, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 29 0.08
120 314 0.92
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.48
Consensus pattern (120 bp):
AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:24456157 original size:18 final size:17
Alignment explanation
Indices: 24456129--24456163 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24456119 ATTATTAAGA
*
24456129 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24456146 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24456164 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24456277 original size:18 final size:17
Alignment explanation
Indices: 24456249--24456283 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24456239 ATTATTAAGA
*
24456249 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24456266 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24456284 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24456397 original size:18 final size:17
Alignment explanation
Indices: 24456369--24456403 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24456359 ATTATTAAGA
*
24456369 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24456386 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24456404 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24456660 original size:16 final size:16
Alignment explanation
Indices: 24456639--24456674 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24456629 GATTTGCTAT
24456639 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24456655 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24456671 TACA
1 TACA
24456675 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24460418 original size:14 final size:14
Alignment explanation
Indices: 24460395--24460426 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
24460385 ATGTTATCCC
24460395 AATTTGCATGATAG
1 AATTTGCATGATAG
*
24460409 AATTTTCATGATAG
1 AATTTGCATGATAG
24460423 AATT
1 AATT
24460427 AACTTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (14 bp):
AATTTGCATGATAG
Found at i:24467046 original size:41 final size:41
Alignment explanation
Indices: 24467001--24467127 Score: 236
Period size: 41 Copynumber: 3.1 Consensus size: 41
24466991 ACCTTTAATA
*
24467001 AAAGTCCTAGTACAATGACTCATACAAACTTTAATAAAAGT
1 AAAGTCCTAGTACAATGACTCATACAACCTTTAATAAAAGT
24467042 AAAGTCCTAGTACAATGACTCATACAACCTTTAATAAAAGT
1 AAAGTCCTAGTACAATGACTCATACAACCTTTAATAAAAGT
*
24467083 AAAGTCTTAGTACAATGACTCATACAACCTTTAATAAAAGT
1 AAAGTCCTAGTACAATGACTCATACAACCTTTAATAAAAGT
24467124 AAAG
1 AAAG
24467128 GATAATAATT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 84 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (41 bp):
AAAGTCCTAGTACAATGACTCATACAACCTTTAATAAAAGT
Found at i:24475525 original size:21 final size:21
Alignment explanation
Indices: 24475501--24475541 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24475491 AGAGAAAAAG
24475501 AAATACAAAACCTTAAGGAAC
1 AAATACAAAACCTTAAGGAAC
* **
24475522 AAATTCAAATTCTTAAGGAA
1 AAATACAAAACCTTAAGGAA
24475542 ACGGGAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.15, G:0.10, T:0.22
Consensus pattern (21 bp):
AAATACAAAACCTTAAGGAAC
Found at i:24475753 original size:14 final size:14
Alignment explanation
Indices: 24475724--24475763 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
24475714 ACGAAACAGA
*
24475724 AAAAAGAAAAGCAGC
1 AAAAAGAAAA-AAGC
24475739 AAAAAGAAAAAAGC
1 AAAAAGAAAAAAGC
*
24475753 AAAAGGAAAAA
1 AAAAAGAAAAA
24475764 CCTTAGGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.75, C:0.07, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAGC
Found at i:24480089 original size:41 final size:41
Alignment explanation
Indices: 24480032--24480199 Score: 291
Period size: 41 Copynumber: 4.1 Consensus size: 41
24480022 GATTTTTATC
24480032 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
1 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
* * *
24480073 CTTTACTTTTATTAAAGGCTGTATAAGTCATTGTATTAGGA
1 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
*
24480114 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTGCTAGGA
1 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
*
24480155 CTTTACTTTTATTAAAGTTTGTATGAGTCATTGTACTAGGA
1 CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
24480196 CTTT
1 CTTT
24480200 TATTAAAGGT
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.45
Consensus pattern (41 bp):
CTTTACTTTTATTAAAGGTTGTATGAGTCATTGTACTAGGA
Found at i:24482983 original size:17 final size:16
Alignment explanation
Indices: 24482961--24482996 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24482951 AAGACAAGTA
24482961 TCAAAATCGTTTTAGGG
1 TCAAAA-CGTTTTAGGG
*
24482978 TCAAAACTTTTTAGGG
1 TCAAAACGTTTTAGGG
24482994 TCA
1 TCA
24482997 CAAAAAAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (16 bp):
TCAAAACGTTTTAGGG
Found at i:24485983 original size:31 final size:31
Alignment explanation
Indices: 24485945--24486017 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
24485935 TAACAGGATG
* * * *
24485945 TGAAACTAGTAGGATGCGAAGCTAGCGGAAT
1 TGAAACTAGCAGAAAGCGAAGCTAACGGAAT
*
24485976 TGAAACTAGCAGAAAGCGAAGCTAACGGGAT
1 TGAAACTAGCAGAAAGCGAAGCTAACGGAAT
*
24486007 TGAAGCTAGCA
1 TGAAACTAGCA
24486018 AGAAGCAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.38, C:0.15, G:0.30, T:0.16
Consensus pattern (31 bp):
TGAAACTAGCAGAAAGCGAAGCTAACGGAAT
Found at i:24490284 original size:124 final size:124
Alignment explanation
Indices: 24490063--24490317 Score: 379
Period size: 124 Copynumber: 2.1 Consensus size: 124
24490053 AAATAGTGGG
** * * *
24490063 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
*
24490128 TCGCTACAGTGGTCATGTAAGAAATAATTTTTTTTT-ACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGATCATGTAAGAAATAATTTTTTTTTGACG-TTTCTGAGCAAATAGTATA
* *
24490187 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
* * *
24490252 TCGCTACAGTTGATCATGTAGGAAATAA-TTTTTTTTGACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAG-TGATCATGTAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAGTATA
24490311 AAATCGC
1 AAATCGC
24490318 GCCCTCGTGG
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
124 99 0.84
125 19 0.16
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
TCGCTACAGTGATCATGTAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:24493773 original size:23 final size:24
Alignment explanation
Indices: 24493672--24494332 Score: 568
Period size: 23 Copynumber: 26.4 Consensus size: 24
24493662 AATAGGTTAG
*
24493672 GGTTGGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
24493699 AGGTTAGGGATTTCAATTAAATTAGGTT
1 -GGTTAGGGTTTTTAATTAAATTA---T
24493727 AGGGTTAGGGTTTTTAATTAAATTAAATT
1 --GGTTAGGGTTTTTAATTAAATT--A-T
* *
24493756 AGCTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
24493781 -GTTAGGGTTTTTAATTAAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
* *
24493807 AGGGTTAGGGTTTTTAATT-AAGTAG
1 --GGTTAGGGTTTTTAATTAAATTAT
24493832 GGTTAGGGTTTTTAATTAAATTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
24493856 -GTTAGGGTTTTTAATTTAATTAACTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
*
24493882 AGGTTA-GGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
24493906 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
24493928 GGTTAGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
*
24493955 AGGGTTAGGGTTTTTAATTAAGTTAT
1 --GGTTAGGGTTTTTAATTAAATTAT
*
24493981 -GTTAGGGTTTTTTAATTTAATTAAGTT
1 GGTTAGGG-TTTTTAATTAAATT-A--T
* * *
24494008 AGGTTAGGTTTTTTAATT-AAGTAG
1 -GGTTAGGGTTTTTAATTAAATTAT
*
24494032 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
24494056 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
*
24494082 AGGTTA-GGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
24494106 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
24494128 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
24494151 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
24494174 GGTTAGTGTTTTTAACTT-AATTAAGTT
1 GGTTAGGGTTTTTAA-TTAAATT-A--T
* *
24494201 AGGTTAGGTTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
24494226 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
24494248 GGTTAGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
24494275 AGGGTTAGGGTTTTTAATT-AAGTAG
1 --GGTTAGGGTTTTTAATTAAATTAT
*
24494300 GGTTAGTGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
24494323 GGTTAGGGTT
1 GGTTAGGGTT
24494333 AGGGTTTTTA
Statistics
Matches: 536, Mismatches: 45, Indels: 109
0.78 0.07 0.16
Matches are distributed among these distances:
22 8 0.01
23 282 0.53
24 31 0.06
25 3 0.01
26 8 0.01
27 36 0.07
28 84 0.16
29 83 0.15
31 1 0.00
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (24 bp):
GGTTAGGGTTTTTAATTAAATTAT
Found at i:24493833 original size:46 final size:50
Alignment explanation
Indices: 24493672--24494332 Score: 468
Period size: 52 Copynumber: 13.2 Consensus size: 50
24493662 AATAGGTTAG
* * *
24493672 GGTTGGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGATTTCAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGG-TTT---TT-AATTA--ATA
* *
24493728 GGGTTAGGGTTTTTAATTAAATTAAATTA-GCTTAGGGTTTTTAATTAAGTTA
1 -GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAA--TA
*
24493780 TGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAGTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAA-TA
* *
24493831 GGGTTAGGGTTTTTAATTAAATTATGTTAGGGTT---TTTAATTTAATTAACTTA
1 -GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--TTTAATTAA--TA
*
24493883 GGTTA-GG--TTT--TT-AATTAAGTTA-TGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATT-AA-TA
*
24493928 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAA--TA
* * *
24493980 TGTTAGGGTTTTTTAATTTAATTAAGTTA-GGTTAGGTTTTTTAATTAAGTA
1 GGTTAGGG-TTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAA-TA
* * *
24494031 GGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTT---TTTAATTTAATTAAGTTA
1 -GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--TTTAATTAA--TA
*
24494083 GGTTA-GG--TTT--TT-AATTAAGTTA-TGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATT-AA-TA
24494128 GGTTAGGGTTTTTAATT--A--AA-TTA-GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATT-AA-TA
* *
24494174 GGTTAGTGTTTTTAACTT-AATTAAGTTA-GGTTAGGTTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAA-TTAAATTAAGTTAGGGTTAGGGTTTTTAATTAA--TA
*
24494225 TGTTAGGGTTTTTAATT--A--AA-TTA-GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATT-AA-TA
*
24494271 GGTTAGGGTTAGGGTTT--TT-AATTAAG-TAGGGTTAGTGTTTTTAATTAAATTA
1 GGTTAGGGTT----TTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATT-AA-TA
24494323 GGTTAGGGTT
1 GGTTAGGGTT
24494333 AGGGTTTTTA
Statistics
Matches: 514, Mismatches: 40, Indels: 105
0.78 0.06 0.16
Matches are distributed among these distances:
44 6 0.01
45 47 0.09
46 82 0.16
47 12 0.02
48 15 0.03
49 8 0.02
50 17 0.03
51 125 0.24
52 147 0.29
53 20 0.04
56 3 0.01
57 32 0.06
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (50 bp):
GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAATA
Found at i:24494015 original size:200 final size:196
Alignment explanation
Indices: 24493729--24494332 Score: 939
Period size: 200 Copynumber: 3.1 Consensus size: 196
24493719 ATTAGGTTAG
*
24493729 GGTTAGGGTTTTTAATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATT--ATTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
* *
24493794 ATTAAATTAAGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTTTTTAATTAAATTATGTT
64 ATTTAATTAAGTTA-GGTTAGGTTTTTTAATTAAGTAGGGTTAGGGTTTTTAATTAAATTATGTT
*
24493859 AGGGTTTTTAATTTAATTAACTTAGGTTAGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAA
128 AGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAA
24493924 ATTA
193 ATTA
24493928 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTT
1 GGTTAGGGTTTTTAATTAAATTA--TTA-GGTTAGGGTTTTTAATTAAGTTATGTTAGGG-TTTT
*
24493993 TAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTAGGGTTAGGGTTTTTAATTAAGTTATGT
62 TAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTAGGGTTAGGGTTTTTAATTAAATTATGT
24494058 TAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTA
127 TAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTA
24494123 AATTA
192 AATTA
* * * *
24494128 GGTTAGGGTTTTTAATT-AA--ATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGTGTTTTTAAC
1 GGTTAGGGTTTTTAATTAAATTATTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAAT
* *
24494190 TTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTTA-TGTTAGGGTTTTTAATTAAATTAGGTTAG
66 TTAATTAAGTTAGGTTAGGTTTTTTAATTAAG-TAGGGTTAGGGTTTTTAATTAAATTATGTTAG
* * * *
24494254 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAG-TAGGGTTAGTGTTTTTAATTA
130 GGTTTTTAATTTAATTAAGTTA-GGTTA-GGTTTTTAATTAAGTTA-TGTTAGGGTTTTTAATTA
24494318 AATTA
192 AATTA
24494323 GGTTAGGGTT
1 GGTTAGGGTT
24494333 AGGGTTTTTA
Statistics
Matches: 381, Mismatches: 16, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
193 85 0.22
194 37 0.10
195 48 0.13
197 2 0.01
199 27 0.07
200 163 0.43
201 19 0.05
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.49
Consensus pattern (196 bp):
GGTTAGGGTTTTTAATTAAATTATTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAAT
TTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTAGGGTTAGGGTTTTTAATTAAATTATGTTAGG
GTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATT
A
Found at i:24494340 original size:28 final size:28
Alignment explanation
Indices: 24493535--24494349 Score: 487
Period size: 23 Copynumber: 31.4 Consensus size: 28
24493525 GGTTTTTACA
24493535 TTAATTAAATTAGGTTAGGGTTAGGGATT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
* * ** * * *
24493564 TCAAATAAAATGATAAATCAGGGTAAGAGTTT
1 T-TAATTAAAT--TAGGTTAGGGTTAG-GGTT
24493596 TTAATTAAATTAGGTTAGGGTTAGGGATT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
*
24493625 TTAATTAAAATAGGTTAGGGTTAGGGTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* * *
24493653 TTCATGTAAAATAGGTTAGGGTTGGGGTTT
1 TTAAT-TAAATTAGGTTAGGGTTAGGG-TT
24493683 TTAATTAAATTAGGTTA-GGTTAGGGATT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
*
24493711 TCAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
** *
24493740 TTAATTAAATTAAATTA-GCTTAGGG-T
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* *
24493766 TT--TT-AATTAAGTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
*
24493791 TTAATTAAATTAAGTTAGGGTTAGGG-T
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
*
24493818 TT--TT-AATTAAG-TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
*
24493843 TTAATTAAATTATGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* ** *
24493866 TTAATTTAATTAACTTA-GGTTAGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* *
24493893 TTAATTAAGTTATGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
24493916 TTAATTAAATTAGGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
24493939 TTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
* *
24493968 TTAATTAAGTTATGTTAGGGTT----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* *
24493992 TTAATTTAATTAAGTTA-GGTTA-GGTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
*
24494018 TT--TT-AATTAAG-TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
* *
24494043 TTAATTAAGTTATGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* * *
24494066 TTAATTTAATTAAGTTA-GGTTAGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* *
24494093 TTAATTAAGTTATGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
24494116 TTAATTAAATTAGGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
24494139 TTAATTAAATTAGGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
*
24494162 TTAATTAAATTAGGTTA--G-T--GTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
*
24494185 TTAACTT-AATTAAGTTA-GGTTA-GGTT
1 TTAA-TTAAATTAGGTTAGGGTTAGGGTT
* * *
24494211 TT--TTAATT-AAGTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
24494236 TTAATTAAATTAGGTTAGGG-T----TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
24494259 TTAATTAAATTAGGTTAGGGTTAGGG-T
1 TTAATTAAATTAGGTTAGGGTTAGGGTT
* *
24494286 TT--TT-AATTAAG-TAGGGTTAGTGTTT
1 TTAATTAAATTAGGTTAGGGTTAG-GGTT
24494311 TTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TT
*
24494340 TTAATCAAAT
1 TTAATTAAAT
24494350 AATGTCAAAA
Statistics
Matches: 645, Mismatches: 68, Indels: 146
0.75 0.08 0.17
Matches are distributed among these distances:
21 2 0.00
22 6 0.01
23 240 0.37
24 45 0.07
25 22 0.03
26 12 0.02
27 52 0.08
28 79 0.12
29 153 0.24
30 13 0.02
31 7 0.01
32 13 0.02
33 1 0.00
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (28 bp):
TTAATTAAATTAGGTTAGGGTTAGGGTT
Found at i:24496505 original size:14 final size:15
Alignment explanation
Indices: 24496488--24496521 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
24496478 AATAAATATC
24496488 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
24496502 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
24496517 TAAAA
1 TAAAA
24496522 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:24496652 original size:28 final size:29
Alignment explanation
Indices: 24496620--24496676 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
24496610 TGAAAATATT
24496620 AAAAATTTTAAAA-TTATTTAAAAAAATA
1 AAAAATTTTAAAATTTATTTAAAAAAATA
*
24496648 AAAAATTTTAAAATTTTCTTTAAAAAAAT
1 AAAAATTTTAAAA-TTTATTTAAAAAAAT
24496677 GAAATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 13 0.50
30 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
AAAAATTTTAAAATTTATTTAAAAAAATA
Found at i:24496748 original size:22 final size:22
Alignment explanation
Indices: 24496718--24496759 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
24496708 ATTTGGAGAT
*
24496718 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
24496740 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
24496760 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:24496780 original size:52 final size:51
Alignment explanation
Indices: 24496709--24496811 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
24496699 TTAATATGGA
* * * *
24496709 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAAG-GAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTAAGAGAAATTTT-GAAGAGAA-TTGAGAG
24496760 TTTGAGAGAATTTTGGAAGGAAATTAAGAGAAATTTTGAAGAGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTAAGAGAAATTTTGAAGAGAATTGAGAG
24496812 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 33 0.73
53 8 0.18
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.32
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTAAGAGAAATTTTGAAGAGAATTGAGAG
Found at i:24496789 original size:22 final size:22
Alignment explanation
Indices: 24496761--24496852 Score: 109
Period size: 22 Copynumber: 4.2 Consensus size: 22
24496751 ATTTGAGAGT
24496761 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
*
24496783 TTAAGAGAAATTTT-GAA-GAGAA
1 TTGAGAG-AATTTTGGAAGGA-AA
*
24496805 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAA-TTTTGGAAGGAAA
*
24496827 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
24496849 TTGA
1 TTGA
24496853 TATTGAATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
21 12 0.20
22 38 0.64
23 8 0.14
24 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:24496810 original size:44 final size:44
Alignment explanation
Indices: 24496761--24496852 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
24496751 ATTTGAGAGT
*
24496761 TTGAGAGAA-TTTTGGAAGGAAATTAAGAGAAATTTTGAA-GAGAA
1 TTGAGAGAATTTTTGAAAGG-AATTAAGAGAAATTTTGAAGGA-AA
* *
24496805 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
24496849 TTGA
1 TTGA
24496853 TATTGAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 32 0.74
45 11 0.26
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
Found at i:24503023 original size:22 final size:24
Alignment explanation
Indices: 24502988--24503032 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
24502978 CTCTAAATCT
24502988 TAAAAAAATAAAAAT-CCTAACCC
1 TAAAAAAATAAAAATCCCTAACCC
24503011 TAAAAAAAT-AAAATCCCTAACC
1 TAAAAAAATAAAAATCCCTAACC
24503033 TTAGAGAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.60, C:0.22, G:0.00, T:0.18
Consensus pattern (24 bp):
TAAAAAAATAAAAATCCCTAACCC
Found at i:24503373 original size:19 final size:19
Alignment explanation
Indices: 24503349--24503402 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
24503339 TTTAAATATT
24503349 TTTTTATAAATTTTAATTA
1 TTTTTATAAATTTTAATTA
* *
24503368 TTTTTATAATTTTTATTTA
1 TTTTTATAAATTTTAATTA
* * *
24503387 TGTTTAGAAAATTTAA
1 TTTTTATAAATTTTAA
24503403 AAGTTTTTAG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (19 bp):
TTTTTATAAATTTTAATTA
Found at i:24503909 original size:27 final size:27
Alignment explanation
Indices: 24503871--24503935 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
24503861 ATTTAGTTGA
24503871 TACTTTAATTTTTTTTGATGTATTTGG
1 TACTTTAATTTTTTTTGATGTATTTGG
24503898 TACTTTAATTTTTTTTGATGTATTTGG
1 TACTTTAATTTTTTTTGATGTATTTGG
*
24503925 TACTTGAATTT
1 TACTTTAATTT
24503936 GTATTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.20, C:0.05, G:0.14, T:0.62
Consensus pattern (27 bp):
TACTTTAATTTTTTTTGATGTATTTGG
Found at i:24517716 original size:63 final size:64
Alignment explanation
Indices: 24517612--24517735 Score: 187
Period size: 63 Copynumber: 2.0 Consensus size: 64
24517602 ATAGAAATGG
* * * *
24517612 TGAAAATGGAGAAATGTGAAACATTTTTAAATGATTATGGTTTTCTCCAAAATGAAAATGAAAA
1 TGAAAATGGAGAAATGAGAAACATTTGTAAATGAATATGGTTTTATCCAAAATGAAAATGAAAA
* *
24517676 TGAAAATGGAGAAAT-AGAATCATTTGTAAATGAATGTGGTTTTATCCAAAATGAAAATGA
1 TGAAAATGGAGAAATGAGAAACATTTGTAAATGAATATGGTTTTATCCAAAATGAAAATGA
24517736 CTTGGAAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
63 39 0.72
64 15 0.28
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.31
Consensus pattern (64 bp):
TGAAAATGGAGAAATGAGAAACATTTGTAAATGAATATGGTTTTATCCAAAATGAAAATGAAAA
Found at i:24522780 original size:12 final size:12
Alignment explanation
Indices: 24522741--24522783 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
24522731 AATTGGTCAT
24522741 GGAGAGATTTGA
1 GGAGAGATTTGA
* *
24522753 GGAGGGATATT-T
1 GGAGAGAT-TTGA
24522765 GGAGAGATTTGA
1 GGAGAGATTTGA
24522777 GGAGAGA
1 GGAGAGA
24522784 ATATTGGGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (12 bp):
GGAGAGATTTGA
Found at i:24522790 original size:24 final size:24
Alignment explanation
Indices: 24522740--24522788 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
24522730 GAATTGGTCA
*
24522740 TGGAGAGATTTGAGGAGGGATATT
1 TGGAGAGATTTGAGGAGGAATATT
24522764 TGGAGAGATTTGAGGAGAGAATATT
1 TGGAGAGATTTGAGGAG-GAATATT
24522789 GGGATTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.33, C:0.00, G:0.39, T:0.29
Consensus pattern (24 bp):
TGGAGAGATTTGAGGAGGAATATT
Found at i:24524305 original size:15 final size:14
Alignment explanation
Indices: 24524270--24524346 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 14
24524260 AGCTAATAGC
24524270 ATACATATATTAAT-
1 ATACATATA-TAATA
*
24524284 TTA-ATATATAAGTA
1 ATACATATATAA-TA
24524298 ATACATATATAATAA
1 ATACATATATAAT-A
*
24524313 AAACATAATAGTAATA
1 ATACAT-ATA-TAATA
24524329 ATACATATTATAA-A
1 ATACATA-TATAATA
24524343 ATAC
1 ATAC
24524347 CAAAACGGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
12 3 0.06
13 6 0.12
14 10 0.19
15 18 0.35
16 11 0.21
17 4 0.08
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
ATACATATATAATA
Found at i:24525546 original size:16 final size:16
Alignment explanation
Indices: 24525525--24525559 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
24525515 TTTTATAGCC
24525525 ATAAAAAGAAAATAAA
1 ATAAAAAGAAAATAAA
* *
24525541 ATAAAAATAAAATACA
1 ATAAAAAGAAAATAAA
24525557 ATA
1 ATA
24525560 TATCGTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (16 bp):
ATAAAAAGAAAATAAA
Found at i:24525930 original size:27 final size:27
Alignment explanation
Indices: 24525871--24525933 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
24525861 AATTGAGTAG
*
24525871 TATAGCCCCAATAGGATAAAATGACCGA
1 TATA-CCCCAATAGGATAAAATAACCGA
* * * *
24525899 AATACCCCAATAGGGTAAAATAACTGT
1 TATACCCCAATAGGATAAAATAACCGA
24525926 TATACCCC
1 TATACCCC
24525934 TAGGAGATGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21
Consensus pattern (27 bp):
TATACCCCAATAGGATAAAATAACCGA
Found at i:24527801 original size:27 final size:27
Alignment explanation
Indices: 24527771--24527823 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
24527761 TTATATAAAG
* *
24527771 GAAAGAAATTAATAAATAAAATAAAAC
1 GAAAGAAATTAAAAAATAAAACAAAAC
* *
24527798 GAAAGTAATTAAAAAATGAAACAAAA
1 GAAAGAAATTAAAAAATAAAACAAAA
24527824 TTTAGAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.70, C:0.04, G:0.09, T:0.17
Consensus pattern (27 bp):
GAAAGAAATTAAAAAATAAAACAAAAC
Found at i:24527806 original size:23 final size:22
Alignment explanation
Indices: 24527775--24527819 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
24527765 ATAAAGGAAA
*
24527775 GAAATTAATAAATAAAATAAAAC
1 GAAAGTAATAAA-AAAATAAAAC
* *
24527798 GAAAGTAATTAAAAAATGAAAC
1 GAAAGTAATAAAAAAATAAAAC
24527820 AAAATTTAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.67, C:0.04, G:0.09, T:0.20
Consensus pattern (22 bp):
GAAAGTAATAAAAAAATAAAAC
Found at i:24535947 original size:6 final size:6
Alignment explanation
Indices: 24535936--24536029 Score: 56
Period size: 6 Copynumber: 15.7 Consensus size: 6
24535926 TAGTAAGGTG
*
24535936 AAAAAT AAAAAT -AAAAT AAAACAT ATAAATCT AAAAA- ATAAAAT -AAAA-
1 AAAAAT AAAAAT AAAAAT AAAA-AT A-AAA-AT AAAAAT A-AAAAT AAAAAT
* * *
24535984 ACAAAT AACAAG AAAAAT AAAAAT AAAACAT --AAAT AAAACAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAA-AT AAAA
24536030 TCTAAATAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 21
0.69 0.09 0.21
Matches are distributed among these distances:
4 2 0.03
5 15 0.22
6 32 0.47
7 14 0.21
8 5 0.07
ACGTcount: A:0.77, C:0.06, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:24535972 original size:27 final size:26
Alignment explanation
Indices: 24535942--24536015 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 26
24535932 GGTGAAAAAT
*
24535942 AAAAATAAAATAAAACATATAAATCTA-
1 AAAAATAAAATAAAACATAT-AA-CAAG
*
24535969 AAAAATAAAATAAAAACAAATAACAAG
1 AAAAATAAAAT-AAAACATATAACAAG
24535996 AAAAATAAAAATAAAACATA
1 AAAAAT-AAAATAAAACATA
24536016 AATAAAACAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.05
27 26 0.63
28 13 0.32
ACGTcount: A:0.76, C:0.07, G:0.01, T:0.16
Consensus pattern (26 bp):
AAAAATAAAATAAAACATATAACAAG
Found at i:24536009 original size:18 final size:17
Alignment explanation
Indices: 24535937--24536029 Score: 57
Period size: 17 Copynumber: 5.2 Consensus size: 17
24535927 AGTAAGGTGA
*
24535937 AAAATAAAAAT-AAAAT
1 AAAACAAAAATAAAAAT
24535953 AAAACATATAAATCTAAAAAAT
1 AAAACA-A-AAA--T-AAAAAT
* *
24535975 AAAA-TAAAA-ACAAAT
1 AAAACAAAAATAAAAAT
*
24535990 AACAAGAAAAATAAAAAT
1 AA-AACAAAAATAAAAAT
*
24536008 AAAACATAAATAAAACAT
1 AAAACAAAAATAAAA-AT
24536026 AAAA
1 AAAA
24536030 TCTAAATAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
15 7 0.12
16 7 0.12
17 16 0.27
18 16 0.27
19 3 0.05
20 2 0.03
22 9 0.15
ACGTcount: A:0.76, C:0.06, G:0.01, T:0.16
Consensus pattern (17 bp):
AAAACAAAAATAAAAAT
Found at i:24536022 original size:22 final size:23
Alignment explanation
Indices: 24535970--24536062 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 23
24535960 ATAAATCTAA
24535970 AAAATAAAATAAAAACAAATAAC
1 AAAATAAAATAAAAACAAATAAC
* *
24535993 AAGA-AAAATAAAAA-TAA-AAC
1 AAAATAAAATAAAAACAAATAAC
*
24536013 ATAAATAAAACATAAAATCTAAATAATTC
1 A-AAAT-AAA-ATAAAAAC-AAATAA--C
24536042 AAAATAAAATAACAAA-AAATA
1 AAAATAAAATAA-AAACAAATA
24536063 TCTAATACTA
Statistics
Matches: 54, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
20 4 0.07
21 4 0.07
22 10 0.19
23 6 0.11
24 6 0.11
25 5 0.09
26 6 0.11
27 7 0.13
28 4 0.07
29 2 0.04
ACGTcount: A:0.74, C:0.08, G:0.01, T:0.17
Consensus pattern (23 bp):
AAAATAAAATAAAAACAAATAAC
Found at i:24536023 original size:11 final size:11
Alignment explanation
Indices: 24536004--24536028 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24535994 AGAAAAATAA
24536004 AAATAAAACAT
1 AAATAAAACAT
24536015 AAATAAAACAT
1 AAATAAAACAT
24536026 AAA
1 AAA
24536029 ATCTAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAACAT
Done.