Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 92 of 199
Found at i:25865396 original size:119 final size:119
Alignment explanation
Indices: 25865150--25865397 Score: 299
Period size: 119 Copynumber: 2.1 Consensus size: 119
25865140 TTGAATGATG
* *
25865150 TCTGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCTGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* * **
25865215 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
25865269 TCTGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCTGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
25865332 TTGTGCGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
25865389 TCT-GGTTAA
1 TCTGGGTTAA
25865398 ATTCCAAAGG
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.69
120 31 0.28
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCTGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:25868458 original size:24 final size:24
Alignment explanation
Indices: 25868431--25868482 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
25868421 TTAGTAAGTC
*
25868431 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
25868455 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
25868479 AAAT
1 AAAT
25868483 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:25872236 original size:49 final size:49
Alignment explanation
Indices: 25872174--25872450 Score: 517
Period size: 49 Copynumber: 5.7 Consensus size: 49
25872164 TAGTATGGCG
25872174 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
25872223 TAATGGCCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
25872270 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
25872319 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
25872366 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
25872415 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25872451 GGCCGATGTG
Statistics
Matches: 222, Mismatches: 2, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
47 93 0.42
49 129 0.58
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:25872338 original size:96 final size:96
Alignment explanation
Indices: 25872174--25872682 Score: 587
Period size: 96 Copynumber: 5.5 Consensus size: 96
25872164 TAGTATGGCG
25872174 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
25872239 GAATATGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
25872270 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
25872335 GAATGTGAAAGTGTATATATGTGATAAGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
25872366 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*** *
25872431 GAATGTGAAAGTGTATATATG-GCCGATG--
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * * * *
25872459 TGAT-G--AATGTGA--AA-GTGTATA-TATATGTGATAAG-GCCTAATGGCC-GAT-G-TGATG
1 TAATGGCCGATGTGATGAATGTG-AAAGTGTATAT-ATATGTG-ATAA-GGCCTAATGGCCGATG
* *
25872513 AATG-TGAAAGT----GTATATATATGTGATAAGGCC
62 --TGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25872545 TAATGGTCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
25872608 GAATGTGAAAGTGTATATATGTGACAGGGCC
66 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
25872639 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
25872683 TCCCGAAGGG
Statistics
Matches: 347, Mismatches: 39, Indels: 56
0.79 0.09 0.13
Matches are distributed among these distances:
83 10 0.03
84 3 0.01
86 7 0.02
87 17 0.05
88 19 0.05
89 21 0.06
90 16 0.05
91 8 0.02
92 5 0.01
93 3 0.01
94 51 0.15
95 4 0.01
96 183 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25872454 original size:32 final size:32
Alignment explanation
Indices: 25872417--25872482 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
25872407 ATAAGGCCTA
25872417 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872449 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872481 AT
1 AT
25872483 ATGTGATAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (32 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:25872465 original size:81 final size:81
Alignment explanation
Indices: 25872368--25872531 Score: 328
Period size: 81 Copynumber: 2.0 Consensus size: 81
25872358 ATAAGGCCTA
25872368 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25872433 ATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATAT
25872449 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25872514 ATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATAT
25872530 AT
1 AT
25872532 ATGTGATAAG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (81 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATAT
Found at i:25872482 original size:177 final size:176
Alignment explanation
Indices: 25872272--25872628 Score: 671
Period size: 177 Copynumber: 2.0 Consensus size: 176
25872262 ATAAGGCCTA
25872272 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25872337 ATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
25872401 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
129 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872449 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25872514 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872579 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
130 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872626 ATG
1 ATG
25872629 TGACAGGGCC
Statistics
Matches: 177, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
177 131 0.74
179 46 0.26
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (176 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:25872504 original size:49 final size:49
Alignment explanation
Indices: 25872449--25872682 Score: 354
Period size: 47 Copynumber: 4.9 Consensus size: 49
25872439 AAGTGTATAT
25872449 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
25872498 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
25872547 ATGGTCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * *
25872594 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * * *
25872641 GTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
25872683 TCCCGAAGGG
Statistics
Matches: 172, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 94 0.55
48 1 0.01
49 77 0.45
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
Found at i:25872511 original size:130 final size:128
Alignment explanation
Indices: 25872321--25872581 Score: 495
Period size: 130 Copynumber: 2.0 Consensus size: 128
25872311 ATAAGGCCTA
25872321 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
25872386 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872449 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25872514 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATAT
64 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25872579 ATG
1 ATG
25872582 TGATAAGGCC
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
128 27 0.21
130 103 0.79
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (128 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:25872857 original size:37 final size:37
Alignment explanation
Indices: 25872801--25872879 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25872791 CCGAGCTCTA
* * *
25872801 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25872838 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25872875 AAGAC
1 AAGAC
25872880 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25874416 original size:40 final size:40
Alignment explanation
Indices: 25874093--25874398 Score: 488
Period size: 40 Copynumber: 7.7 Consensus size: 40
25874083 GAGAATTGAG
25874093 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
25874133 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25874173 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25874213 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
25874253 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
25874293 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
25874333 AGTAATATATCCGTGCTAA-CCCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
25874373 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
25874399 AGAGTAATCA
Statistics
Matches: 246, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 243 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:25877834 original size:39 final size:44
Alignment explanation
Indices: 25877809--25878497 Score: 799
Period size: 47 Copynumber: 14.8 Consensus size: 44
25877799 TAGTATGGCG
*
25877809 TAATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25877856 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
*
25877905 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25877952 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
25878001 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25878048 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25878095 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
25878144 TAATGGCCGATGTGATGAATGTG-AA-TG----TGT-ATA----
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAGGCC
25878177 T-ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25878223 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
*
25878272 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25878319 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
25878368 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGAT-AGGCC
25878415 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGAT-AGGCC
*
25878464 TAATGGCCGATGTGATGAATGTGAATGTGTATAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25878498 ATGGCCGATG
Statistics
Matches: 609, Mismatches: 6, Indels: 56
0.91 0.01 0.08
Matches are distributed among these distances:
32 21 0.03
33 3 0.00
34 2 0.00
37 1 0.00
38 2 0.00
39 3 0.00
40 3 0.00
41 2 0.00
42 1 0.00
45 5 0.01
46 1 0.00
47 290 0.48
48 2 0.00
49 273 0.45
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (44 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAGGCC
Found at i:25877973 original size:96 final size:96
Alignment explanation
Indices: 25877809--25878179 Score: 683
Period size: 96 Copynumber: 3.9 Consensus size: 96
25877799 TAGTATGGCG
*
25877809 TAATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25877874 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
25877905 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25877970 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
25878001 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25878066 ATGTGAAAGTG--TATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
25878095 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
25878160 GAATGTGAATGTGTATATAT
64 GAATGTGAAAGTGTATATAT
25878180 GGCCGATGTG
Statistics
Matches: 267, Mismatches: 4, Indels: 6
0.96 0.01 0.02
Matches are distributed among these distances:
94 47 0.18
96 215 0.81
98 5 0.02
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:25878183 original size:32 final size:32
Alignment explanation
Indices: 25878146--25878212 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
25878136 ATAAGGCCTA
*
25878146 ATGGCCGATGTGATGAATGTGAATGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25878178 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25878210 ATG
1 ATG
25878213 TGATAAGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.06, G:0.31, T:0.33
Consensus pattern (32 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:25878232 original size:47 final size:47
Alignment explanation
Indices: 25878178--25878500 Score: 574
Period size: 49 Copynumber: 6.7 Consensus size: 47
25878168 ATGTGTATAT
25878178 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
25878225 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
*
25878274 ATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
25878321 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
25878370 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
25878417 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
*
25878466 ATGGCCGATGTGATGAATGTGAATGTGTATATATG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATG
25878501 GCCGATGTGA
Statistics
Matches: 267, Mismatches: 3, Indels: 12
0.95 0.01 0.04
Matches are distributed among these distances:
47 128 0.48
49 139 0.52
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
Found at i:25878238 original size:79 final size:80
Alignment explanation
Indices: 25878097--25878258 Score: 299
Period size: 79 Copynumber: 2.0 Consensus size: 80
25878087 ATAAGGCCTA
25878097 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25878162 ATGTGAATGTGTATAT
65 ATGTGAAAGTGTATAT
25878178 ATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 ATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
25878242 TGTGAAAGTGTATAT
66 TGTGAAAGTGTATAT
25878257 AT
1 AT
25878259 ATGTGATAAG
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
79 53 0.66
81 27 0.34
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.31
Consensus pattern (80 bp):
ATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATAT
Found at i:25878277 original size:49 final size:49
Alignment explanation
Indices: 25878178--25878710 Score: 664
Period size: 47 Copynumber: 10.9 Consensus size: 49
25878168 ATGTGTATAT
25878178 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
25878225 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
25878274 ATGGCCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
25878321 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
25878370 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
25878417 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * ***
25878466 ATGGCCGATGTGATGAATGTGAATGTGTATATATGGCCGATGTGATGAATGTGAA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATAT-----ATGTGAT-AAGGCCTA
**** * *
25878521 AGTGTATATATATGTGAT-AAGGCCT-AATG-GCCTATATATATGTGATAAGGCCTA
1 A-TG---GCCGATGTGATGAATG--TGAAAGTG--TATATATATGTGATAAGGCCTA
25878575 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * *
25878622 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * * *
25878669 GTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
25878711 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 31, Indels: 50
0.84 0.06 0.10
Matches are distributed among these distances:
47 215 0.50
48 1 0.00
49 149 0.35
50 10 0.02
51 4 0.01
53 2 0.00
54 12 0.03
55 12 0.03
56 2 0.00
58 4 0.01
59 11 0.03
60 8 0.02
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
Found at i:25878285 original size:96 final size:96
Alignment explanation
Indices: 25878178--25878500 Score: 628
Period size: 96 Copynumber: 3.4 Consensus size: 96
25878168 ATGTGTATAT
25878178 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
25878243 GTGAAAGTGTATATATATGTGATAAGGCCTA
66 GTGAAAGTGTATATATATGTGATAAGGCCTA
*
25878274 ATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
25878339 GTGAAAGTGTATATATATGTGATAAGGCCTA
66 GTGAAAGTGTATATATATGTGATAAGGCCTA
25878370 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
25878435 GTGAAAGTGTATATATATGTGATAAGGCCTA
66 GTGAAAGTGTATATATATGTGATAAGGCCTA
*
25878466 ATGGCCGATGTGATGAATGTGAATGTGTATATATG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATG
25878501 GCCGATGTGA
Statistics
Matches: 224, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 224 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (96 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATATGTGATAAGGCCTA
Found at i:25878503 original size:32 final size:32
Alignment explanation
Indices: 25878466--25878531 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
25878456 ATAAGGCCTA
*
25878466 ATGGCCGATGTGATGAATGTGAATGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25878498 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
25878530 AT
1 AT
25878532 ATGTGATAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.33
Consensus pattern (32 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:25878561 original size:30 final size:28
Alignment explanation
Indices: 25878525--25878580 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
25878515 TGTGAAAGTG
25878525 TATATATATGTGATAAGGCCTAATGGCC
1 TATATATATGTGATAAGGCCTAATGGCC
25878553 TATATATATGTGATAAGGCCTAATGGCC
1 TATATATATGTGATAAGGCCTAATGGCC
25878581 GATGTGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (28 bp):
TATATATATGTGATAAGGCCTAATGGCC
Found at i:25878885 original size:37 final size:37
Alignment explanation
Indices: 25878829--25878907 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25878819 CCGAGCTCTA
* * *
25878829 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25878866 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25878903 AAGAC
1 AAGAC
25878908 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25883502 original size:17 final size:16
Alignment explanation
Indices: 25883453--25883504 Score: 63
Period size: 14 Copynumber: 3.3 Consensus size: 16
25883443 CCGTTTAGTT
25883453 TATTTTTTATATTT--
1 TATTTTTTATATTTAC
25883467 TATTTTTTATATTTAC
1 TATTTTTTATATTTAC
* *
25883483 TATTTTTCTATTTTTTC
1 TATTTTT-TATATTTAC
25883500 TATTT
1 TATTT
25883505 ATTTTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 14 0.42
16 7 0.21
17 12 0.36
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTTTATATTTAC
Found at i:25883512 original size:7 final size:7
Alignment explanation
Indices: 25883451--25883522 Score: 56
Period size: 7 Copynumber: 9.7 Consensus size: 7
25883441 CCCCGTTTAG
25883451 TTTATTT
1 TTTATTT
*
25883458 TTTATAT
1 TTTATTT
25883465 TTTATTT
1 TTTATTT
25883472 TTTATATT
1 TTTAT-TT
*
25883480 TACTATTT
1 T-TTATTT
25883488 TTCTATTT
1 TT-TATTT
* *
25883496 TTT-CTA
1 TTTATTT
25883502 TTTATTT
1 TTTATTT
25883509 TTTAATTT
1 TTT-ATTT
25883517 ATTTAT
1 -TTTAT
25883523 GTTATTCTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
6 4 0.08
7 22 0.43
8 19 0.37
9 6 0.12
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTATTT
Found at i:25883714 original size:12 final size:12
Alignment explanation
Indices: 25883697--25883721 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25883687 TAATTCACTT
25883697 AGTCATAGTGAA
1 AGTCATAGTGAA
25883709 AGTCATAGTGAA
1 AGTCATAGTGAA
25883721 A
1 A
25883722 TCTGTTTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (12 bp):
AGTCATAGTGAA
Found at i:25883773 original size:6 final size:6
Alignment explanation
Indices: 25883748--25883800 Score: 52
Period size: 6 Copynumber: 8.0 Consensus size: 6
25883738 TGTTTACTCA
*
25883748 TTATTT TTAGTTT GTATTT TTATTT TTATTAGT ATTATTT TTATTT ATTATTT
1 TTATTT TTA-TTT TTATTT TTATTT TTATT--T -TTATTT TTATTT -TTATTT
25883801 ACGTATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
6 22 0.55
7 12 0.30
8 1 0.03
9 5 0.12
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (6 bp):
TTATTT
Found at i:25883787 original size:15 final size:13
Alignment explanation
Indices: 25883748--25883800 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
25883738 TGTTTACTCA
25883748 TTATTT-TTAGTTT
1 TTATTTATTA-TTT
*
25883761 GTATTT-TTATTT
1 TTATTTATTATTT
25883773 TTATTAGTATTATTT
1 TTATT--TATTATTT
25883788 TTATTTATTATTT
1 TTATTTATTATTT
25883801 ACGTATTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 7 0.20
13 16 0.46
14 1 0.03
15 11 0.31
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (13 bp):
TTATTTATTATTT
Found at i:25883794 original size:19 final size:20
Alignment explanation
Indices: 25883748--25883797 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
25883738 TGTTTACTCA
*
25883748 TTATTT-TTAGTTTGTATTT
1 TTATTTATTAGTATGTATTT
25883767 TTATTTTTATTAGTAT-TATTT
1 TTA--TTTATTAGTATGTATTT
25883788 TTATTTATTA
1 TTATTTATTA
25883798 TTTACGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 10 0.37
21 11 0.41
22 6 0.22
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (20 bp):
TTATTTATTAGTATGTATTT
Found at i:25883829 original size:16 final size:16
Alignment explanation
Indices: 25883792--25883837 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
25883782 TTATTTTTAT
25883792 TTATTATTTACGTATT-
1 TTATTA-TTACGTATTA
25883808 TTATTATTAC-TATTA
1 TTATTATTACGTATTA
25883823 TTGATTATT-CGTATT
1 TT-ATTATTACGTATT
25883838 TCTTTTGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.15
15 7 0.26
16 16 0.59
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.61
Consensus pattern (16 bp):
TTATTATTACGTATTA
Found at i:25889041 original size:27 final size:27
Alignment explanation
Indices: 25889011--25889066 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
25889001 AAACTAATAT
25889011 AATTGCACATATACTGCACAAGTTTTG
1 AATTGCACATATACTGCACAAGTTTTG
25889038 AATTGCACATATACTGCACAAGTTTTG
1 AATTGCACATATACTGCACAAGTTTTG
25889065 AA
1 AA
25889067 CTTCAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (27 bp):
AATTGCACATATACTGCACAAGTTTTG
Found at i:25892925 original size:68 final size:68
Alignment explanation
Indices: 25892816--25892951 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
25892806 TGTTTTCACG
* *
25892816 TCAAGCACATTTCTCTTTATGAGATAATCCAAATTTATAAGGAAGTGAC-AGTTATTGATATCGA
1 TCAAGCACATTTCTCTTTATGAGATAATCCAAATTTATAAGGAAGCGACGA-TTATCGATATCGA
25892880 CCCA
65 CCCA
* *
25892884 TCAAGCACATTTCTCTTTATGAGGTAATCCAAATTTATAAGGAAGCGACGATTATCGATGTCGAC
1 TCAAGCACATTTCTCTTTATGAGATAATCCAAATTTATAAGGAAGCGACGATTATCGATATCGAC
25892949 CCA
66 CCA
25892952 AACAAATAGA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 62 0.98
69 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (68 bp):
TCAAGCACATTTCTCTTTATGAGATAATCCAAATTTATAAGGAAGCGACGATTATCGATATCGAC
CCA
Found at i:25895337 original size:40 final size:40
Alignment explanation
Indices: 25895278--25895353 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
25895268 TGTACCTTAA
* *
25895278 TGCCCCTGTAAACAGTTCGGTGTCCCTATTTGCACAACTG
1 TGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACAACTG
25895318 TGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACA
1 TGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACA
25895354 TTTATGCCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (40 bp):
TGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACAACTG
Found at i:25895362 original size:40 final size:40
Alignment explanation
Indices: 25895277--25895364 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
25895267 TTGTACCTTA
* *
25895277 ATGCCCCTGTAAACAGTTCGGTGTCCCTATTTGCACAACT
1 ATGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACAACT
* **
25895317 GTGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACATTT
1 ATGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACAACT
25895357 ATGCCCCT
1 ATGCCCCT
25895365 AAATGCACTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.31
Consensus pattern (40 bp):
ATGCCCCTGTAAACACTTCGGTGTCCCTAATTGCACAACT
Found at i:25895420 original size:20 final size:20
Alignment explanation
Indices: 25895358--25895432 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
25895348 TGCACATTTA
*
25895358 TGCCCCTAAATGCACTCTAG
1 TGCCCCTGAATGCACTCTAG
* *
25895378 TCCCCCTGACA-GCACAT-TCG
1 TGCCCCTGA-ATGCAC-TCTAG
*
25895398 TGCCCTTGAATGCACTCTAG
1 TGCCCCTGAATGCACTCTAG
*
25895418 TGCCCCTGATTGCAC
1 TGCCCCTGAATGCAC
25895433 ACCCGTGCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
19 2 0.05
20 39 0.91
21 2 0.05
ACGTcount: A:0.20, C:0.37, G:0.17, T:0.25
Consensus pattern (20 bp):
TGCCCCTGAATGCACTCTAG
Found at i:25895433 original size:40 final size:40
Alignment explanation
Indices: 25895341--25895433 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
25895331 ACTTCGGTGT
* *
25895341 CCCTAATTGCACATTTATGCCCCTAAATGCACTCTAGTCC
1 CCCTGATTGCACATTCATGCCCCTAAATGCACTCTAGTCC
** * * * *
25895381 CCCTGACAGCACATTCGTGCCCTTGAATGCACTCTAGTGC
1 CCCTGATTGCACATTCATGCCCCTAAATGCACTCTAGTCC
25895421 CCCTGATTGCACA
1 CCCTGATTGCACA
25895434 CCCGTGCTCC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.23, C:0.35, G:0.15, T:0.27
Consensus pattern (40 bp):
CCCTGATTGCACATTCATGCCCCTAAATGCACTCTAGTCC
Found at i:25905129 original size:4 final size:4
Alignment explanation
Indices: 25905120--25905156 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
25905110 CTAAAGGAAA
25905120 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
25905157 CGAGTGTGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:25906169 original size:61 final size:59
Alignment explanation
Indices: 25905984--25906177 Score: 153
Period size: 61 Copynumber: 3.2 Consensus size: 59
25905974 GTGGATGTCT
* * *
25905984 TTGTGGCCATCTAACTATATGGACATCTCTATGGCTATCTTCTATATGAGTTTGGACGCCC
1 TTGTGGCCATCTAACTATATGGACA-CTCTATGGCTATCTTGTATA-GTGTTTGGACGCTC
* * * * * * * * * * *
25906045 TTGAGGCTATTTAA-TGTGAGTAGGTTC-CTTTGTGGCTATC-TG-ATATTATGTGGACGCTT
1 TTGTGGCCATCTAACTAT-A-T-GG-ACACTCTATGGCTATCTTGTATAGTGTTTGGACGCTC
25906104 TTGTGGCCATCTAACTATATGGACGACTCTATGGCTATCTTGTATACGTGTTTGGACGCTC
1 TTGTGGCCATCTAACTATATGGAC-ACTCTATGGCTATCTTGTATA-GTGTTTGGACGCTC
*
25906165 TTGTGGCTATCTA
1 TTGTGGCCATCTA
25906178 TGTCAAAGAA
Statistics
Matches: 97, Mismatches: 26, Indels: 20
0.68 0.18 0.14
Matches are distributed among these distances:
56 1 0.01
57 2 0.02
58 12 0.12
59 22 0.23
60 10 0.10
61 35 0.36
62 12 0.12
63 2 0.02
64 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (59 bp):
TTGTGGCCATCTAACTATATGGACACTCTATGGCTATCTTGTATAGTGTTTGGACGCTC
Found at i:25906199 original size:120 final size:119
Alignment explanation
Indices: 25905983--25906205 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 119
25905973 AGTGGATGTC
*
25905983 TTTGTGGCCATCTAACTATATGGACATCTCTATGGCTATCTTCTATATGAGTTTGGACGCCCTTG
1 TTTGTGGCCATCTAACTATATGGACATCTCTATGGCTATCTTCTATACGAGTTTGGACGCCCTTG
* * * * *
25906048 AGGCTATTTAATGTGAGTAGGTTCCTTTGTGGCTATCTGATATTATGTGGACGCT
66 AGGCTATCTAATGTAAGAAAG-TACTTTGTGGCTATCTGATATTATGTGGACGCT
* * *
25906103 TTTGTGGCCATCTAACTATATGGACGA-CTCTATGGCTATCTTGTATACGTGTTTGGACGCTCTT
1 TTTGTGGCCATCTAACTATATGGAC-ATCTCTATGGCTATCTTCTATACGAGTTTGGACGCCCTT
* *
25906167 GTGGCTATCT-ATGTCAAAGAAAG-ACTTCTGTGGTTATCT
65 GAGGCTATCTAATGT--AAGAAAGTACTT-TGTGGCTATCT
25906206 ATGTCAAGTG
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
119 7 0.08
120 76 0.86
121 5 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.39
Consensus pattern (119 bp):
TTTGTGGCCATCTAACTATATGGACATCTCTATGGCTATCTTCTATACGAGTTTGGACGCCCTTG
AGGCTATCTAATGTAAGAAAGTACTTTGTGGCTATCTGATATTATGTGGACGCT
Found at i:25909626 original size:38 final size:39
Alignment explanation
Indices: 25909576--25909652 Score: 122
Period size: 38 Copynumber: 2.0 Consensus size: 39
25909566 TTGTTTAGTA
25909576 AAAATA-TTTTTTTATTTTTTTAATTTTAAAAT-ATTTTT
1 AAAATACTTTTTTTA-TTTTTTAATTTTAAAATAATTTTT
*
25909614 AAAATACTTTTTTTATTTTTTATTTTTAAAATAATTTTT
1 AAAATACTTTTTTTATTTTTTAATTTTAAAATAATTTTT
25909653 GGTTTTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
38 22 0.61
39 14 0.39
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (39 bp):
AAAATACTTTTTTTATTTTTTAATTTTAAAATAATTTTT
Found at i:25909651 original size:25 final size:26
Alignment explanation
Indices: 25909607--25909662 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
25909597 AATTTTAAAA
* *
25909607 TATTTTTAAAATACTTTTTTTATTTTT
1 TATTTTTAAAATAC-ATTTTTAGTTTT
*
25909634 TATTTTTAAAATA-ATTTTTGGTTTT
1 TATTTTTAAAATACATTTTTAGTTTT
25909659 TATT
1 TATT
25909663 AAAAAATGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 13 0.50
27 13 0.50
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.68
Consensus pattern (26 bp):
TATTTTTAAAATACATTTTTAGTTTT
Found at i:25909658 original size:26 final size:27
Alignment explanation
Indices: 25909607--25909659 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
25909597 AATTTTAAAA
* *
25909607 TATTTTTAAAATACTTTTTTTATTTTT
1 TATTTTTAAAATACATTTTTGATTTTT
*
25909634 TATTTTTAAAATA-ATTTTTGGTTTTT
1 TATTTTTAAAATACATTTTTGATTTTT
25909660 ATTAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (27 bp):
TATTTTTAAAATACATTTTTGATTTTT
Found at i:25910182 original size:20 final size:20
Alignment explanation
Indices: 25910154--25910192 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25910144 CTAAAAATTA
25910154 TTTAGATATATA-TAATATTG
1 TTTAGATATA-ACTAATATTG
*
25910174 TTTATATATAACTAATATT
1 TTTAGATATAACTAATATT
25910193 ATTTTGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
TTTAGATATAACTAATATTG
Found at i:25913928 original size:4 final size:4
Alignment explanation
Indices: 25913907--25913944 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
25913897 AGAACAGTTT
25913907 TAAA T-AA T-AA TAAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAA
25913945 TAGGCTAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.19
4 23 0.72
5 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:25915522 original size:44 final size:44
Alignment explanation
Indices: 25915474--25915770 Score: 117
Period size: 44 Copynumber: 6.6 Consensus size: 44
25915464 TATTTTAATC
* *
25915474 TGCTCCACTGCAACGTCAGAGAGATAGGATTAGTAGCTTCAATA
1 TGCTCCACTGCAACGTCAGAGAGATAAGATTAGTAGCTTCAACA
** * * * * *
25915518 TGCTCCACTGCAATTTTAGGGAGATAAGATTGGTATCTTCAACC
1 TGCTCCACTGCAACGTCAGAGAGATAAGATTAGTAGCTTCAACA
* * * * * *
25915562 TGCTCCATTGCAACTTCA-AGGAGATAAGGTT--T-GATATGATC-
1 TGCTCCACTGCAACGTCAGA-GAGATAAGATTAGTAGCT-TCAACA
* *
25915603 TGCTCTACTGCAACTTCAGAGAGATAATATCTGCAATTTA-TAGCTTCAATC-
1 TGCTCCACTGCAACGTCAGAGAGAT-A-A---G--A-TTAGTAGCTTCAA-CA
* * * * * * * *
25915654 TGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTC-
1 TGCTCCACTGCAACGTCAGAGAGATAAGATTAG-TAGCTTCA-ACA
* * * *
25915699 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACC
1 TGCTCCACTGCAACGTCAGAGAGATAAGA-TTAGTAGCTTCAACA
* * *
25915743 TGCTCCACTGAAACTTCAGGGAGATAAG
1 TGCTCCACTGCAACGTCAGAGAGATAAG
25915771 GTTTAATATG
Statistics
Matches: 196, Mismatches: 38, Indels: 38
0.72 0.14 0.14
Matches are distributed among these distances:
41 22 0.11
42 6 0.03
43 4 0.02
44 95 0.48
45 35 0.18
46 4 0.02
49 3 0.02
50 4 0.02
51 23 0.12
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACGTCAGAGAGATAAGATTAGTAGCTTCAACA
Found at i:25922408 original size:19 final size:19
Alignment explanation
Indices: 25922384--25922429 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25922374 TACAAGATTC
*
25922384 TTTTTTTTTTGTCTTCTTG
1 TTTTTTGTTTGTCTTCTTG
* *
25922403 TTTTTTGTTTGTTTTTTTG
1 TTTTTTGTTTGTCTTCTTG
*
25922422 TTTGTTGT
1 TTTTTTGT
25922430 CCCCTTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.80
Consensus pattern (19 bp):
TTTTTTGTTTGTCTTCTTG
Found at i:25922420 original size:12 final size:12
Alignment explanation
Indices: 25922403--25922427 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25922393 TGTCTTCTTG
25922403 TTTTTTGTTTGT
1 TTTTTTGTTTGT
25922415 TTTTTTGTTTGT
1 TTTTTTGTTTGT
25922427 T
1 T
25922428 GTCCCCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (12 bp):
TTTTTTGTTTGT
Found at i:25926350 original size:41 final size:41
Alignment explanation
Indices: 25926293--25926393 Score: 159
Period size: 41 Copynumber: 2.5 Consensus size: 41
25926283 ATTTATTGTT
* *
25926293 TGATACAGGTATTTACTTAAGCTTTGTCTTCAAGGCGAGCA
1 TGATACAGGTATTTACTTAAGCTTTGTCTTCAAGGCAAACA
25926334 TGATACAGGTATTTACTTAAGCTTTGTCTTCAAGGCAAACA
1 TGATACAGGTATTTACTTAAGCTTTGTCTTCAAGGCAAACA
*
25926375 TGATA-TGGATATTTACTTA
1 TGATACAGG-TATTTACTTA
25926394 GATTTCAAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 2 0.04
41 54 0.96
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (41 bp):
TGATACAGGTATTTACTTAAGCTTTGTCTTCAAGGCAAACA
Found at i:25927781 original size:37 final size:37
Alignment explanation
Indices: 25927669--25927788 Score: 107
Period size: 37 Copynumber: 3.2 Consensus size: 37
25927659 TTTTAGTTTG
* * * *
25927669 ATTTGATAAACTAATATAAATTAGTATCCAAATATTA
1 ATTTGGTAAACTAATATAAAGTAGTATCTATATATTA
** * ** * * * *
25927706 ATTTGGTAAAAAAACATTTAGTAATGTTTTTAGT-TTA
1 ATTTGGTAAACTAATATAAAGTAGTATCTATA-TATTA
25927743 ATTTGGTAAACTAATATAAAGTAGTATCTATATATTA
1 ATTTGGTAAACTAATATAAAGTAGTATCTATATATTA
25927780 ATTTGGTAA
1 ATTTGGTAA
25927789 GAAAATAATG
Statistics
Matches: 59, Mismatches: 22, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
36 1 0.02
37 57 0.97
38 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (37 bp):
ATTTGGTAAACTAATATAAAGTAGTATCTATATATTA
Found at i:25927879 original size:62 final size:64
Alignment explanation
Indices: 25927755--25927880 Score: 159
Period size: 63 Copynumber: 2.0 Consensus size: 64
25927745 TTGGTAAACT
* * **
25927755 AATATAAAGTAGTATCTATATATTAATTTGGTAAGAAAATAATGTTAAATAATTGTCGTATCTA
1 AATATAAAGTAGTATCTAAATATTAATTTGATAAGAAAATAAACTTAAATAATTGTCGTATCTA
* * *
25927819 AATA-AAAGTAGTATTTAAATATTAATTTGATTA-AAGATAAACTTAAATAATTG-CGATATCTA
1 AATATAAAGTAGTATCTAAATATTAATTTGATAAGAAAATAAACTTAAATAATTGTCG-TATCTA
25927881 CTACAAATTG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
61 2 0.04
62 23 0.43
63 25 0.46
64 4 0.07
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (64 bp):
AATATAAAGTAGTATCTAAATATTAATTTGATAAGAAAATAAACTTAAATAATTGTCGTATCTA
Found at i:25934584 original size:13 final size:13
Alignment explanation
Indices: 25934562--25934591 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25934552 CATTTAATAA
25934562 CATAGCACGTAAT
1 CATAGCACGTAAT
*
25934575 CATAGTACGTAAT
1 CATAGCACGTAAT
25934588 CATA
1 CATA
25934592 TAATGGATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (13 bp):
CATAGCACGTAAT
Found at i:25939291 original size:63 final size:63
Alignment explanation
Indices: 25939213--25939333 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
25939203 TGGCAAGCCA
* * * * *
25939213 TGTAACTCACTGTTTTAGCATTAGAGGCCCACGGGCTAGAGACACGGGCATGTGTCCAAACTG
1 TGTAACTCACTGTTTTAGAATTAGAGACACACGGGCAAGAGACACGAGCATGTGTCCAAACTG
* * * *
25939276 TGTAAGTCACTGTTTTGGAATTAGAGACACACGGGCAAGAGACATGAGCGTGTGTCCA
1 TGTAACTCACTGTTTTAGAATTAGAGACACACGGGCAAGAGACACGAGCATGTGTCCA
25939334 TGCCGTGTGA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (63 bp):
TGTAACTCACTGTTTTAGAATTAGAGACACACGGGCAAGAGACACGAGCATGTGTCCAAACTG
Found at i:25940568 original size:18 final size:17
Alignment explanation
Indices: 25940545--25940580 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
25940535 GTTGTGTTAT
25940545 ATGATAAATTGATGATTG
1 ATGATAAATTGA-GATTG
25940563 ATGATAAATTGAGATTG
1 ATGATAAATTGAGATTG
25940580 A
1 A
25940581 AAGAATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (17 bp):
ATGATAAATTGAGATTG
Found at i:25944249 original size:19 final size:20
Alignment explanation
Indices: 25944211--25944249 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
25944201 ATACTTAAAT
25944211 AAGTGAATTCGTAAATAGGAG
1 AAGTGAATTCGT-AATAGGAG
*
25944232 AAGTGAATTGGT-ATAGGA
1 AAGTGAATTCGTAATAGGA
25944250 CCAATTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.41, C:0.03, G:0.31, T:0.26
Consensus pattern (20 bp):
AAGTGAATTCGTAATAGGAG
Found at i:25947474 original size:13 final size:13
Alignment explanation
Indices: 25947456--25947481 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25947446 TAATTTACCG
25947456 AAATTATTATAAT
1 AAATTATTATAAT
25947469 AAATTATTATAAT
1 AAATTATTATAAT
25947482 TAAGATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:25950482 original size:61 final size:59
Alignment explanation
Indices: 25950405--25950556 Score: 186
Period size: 61 Copynumber: 2.5 Consensus size: 59
25950395 TAGTAGTCAC
* *
25950405 CTATGTTTTTTTTCTTTTTTGGTCA-TCCAATTATGAAAAGTTACAAA-ATGGTCACCCAA
1 CTATGTTTTTTTTCTTTTTTGGTCACT-CAACTATGAAAAGTTA-AAATATGGTCAACCAA
25950464 CTATGTTTTCTTTTTCTTTTTTGGTCACTCAACTATGAAAAGTTAAAATATGGTCAACCAA
1 CTATG-TTT-TTTTTCTTTTTTGGTCACTCAACTATGAAAAGTTAAAATATGGTCAACCAA
* *
25950525 CTAT-TTAATTTTGTCTTTCTTGGTCAC-CAACT
1 CTATGTT--TTTTTTCTTTTTTGGTCACTCAACT
25950557 GACTAACGTA
Statistics
Matches: 83, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
59 12 0.14
60 22 0.27
61 48 0.58
62 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (59 bp):
CTATGTTTTTTTTCTTTTTTGGTCACTCAACTATGAAAAGTTAAAATATGGTCAACCAA
Found at i:25951018 original size:17 final size:18
Alignment explanation
Indices: 25950991--25951037 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
25950981 TTTTTTTATA
25950991 AATTTTATAAAATTAT-AT
1 AATTTT-TAAAATTATAAT
* * *
25951009 GATTTTTAAATTTCTAAT
1 AATTTTTAAAATTATAAT
25951027 AATTTTTAAAA
1 AATTTTTAAAA
25951038 ACTTTTAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
AATTTTTAAAATTATAAT
Found at i:25959412 original size:18 final size:17
Alignment explanation
Indices: 25959382--25959416 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
25959372 ATATATTTAT
*
25959382 TTTTTAAATTTTTTAAA
1 TTTTAAAATTTTTTAAA
25959399 TTTTAAAATATTTTTAAA
1 TTTTAAAAT-TTTTTAAA
25959417 ATACTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAAAATTTTTTAAA
Found at i:25959434 original size:37 final size:38
Alignment explanation
Indices: 25959381--25959472 Score: 136
Period size: 36 Copynumber: 2.4 Consensus size: 38
25959371 AATATATTTA
*
25959381 TTTTTTAAATTTTTTAAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAA-TTTTTAAATTTTAAAATA-TTTTAAAATAC
25959421 -TTTTTT-ATTTTT-AATTTTAAAATATTTTAAAATAC
1 TTTTTTTAATTTTTAAATTTTAAAATATTTTAAAATAC
25959456 TTTTTTTAATTTTTAAA
1 TTTTTTTAATTTTTAAA
25959473 ATAAATTTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
35 11 0.23
36 18 0.38
37 11 0.23
38 3 0.06
39 5 0.10
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (38 bp):
TTTTTTTAATTTTTAAATTTTAAAATATTTTAAAATAC
Found at i:25961040 original size:28 final size:28
Alignment explanation
Indices: 25961000--25961056 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
25960990 TGCCATTACA
*
25961000 AAAGCAACTACTCAGTGCTCGTCCAATG
1 AAAGCAACTACTCAGTGCTCATCCAATG
*
25961028 AAAGCAACTACTCAGTGCTCATCGAATG
1 AAAGCAACTACTCAGTGCTCATCCAATG
25961056 A
1 A
25961057 TATTGTCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (28 bp):
AAAGCAACTACTCAGTGCTCATCCAATG
Found at i:25972513 original size:20 final size:20
Alignment explanation
Indices: 25972466--25972552 Score: 85
Period size: 20 Copynumber: 4.3 Consensus size: 20
25972456 AGTTACTAAA
25972466 TCTCTTAAACAAATTAC--AAT
1 TCTCTT-AA-AAATTACTGAAT
25972486 ATCTCTTAAACAATTACTGAAT
1 -TCTCTTAAA-AATTACTGAAT
*
25972508 TC-CTTACAAGATTACTGAA-
1 TCTCTTA-AAAATTACTGAAT
25972527 TCTCTTAAAAATTACTGAAT
1 TCTCTTAAAAATTACTGAAT
25972547 T-TCTTA
1 TCTCTTA
25972553 GACTTTGTCG
Statistics
Matches: 58, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
19 19 0.33
20 26 0.45
21 10 0.17
22 3 0.05
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (20 bp):
TCTCTTAAAAATTACTGAAT
Found at i:25972522 original size:40 final size:38
Alignment explanation
Indices: 25972474--25972552 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 38
25972464 AATCTCTTAA
25972474 ACAAATTAC-AATATCTCTTAAACAATTACTGAATTCCTT
1 ACAAATTACTAA-ATCTCTTAAA-AATTACTGAATTCCTT
* *
25972513 ACAAGATTACTGAATCTCTTAAAAATTACTGAATTTCTT
1 ACAA-ATTACTAAATCTCTTAAAAATTACTGAATTCCTT
25972552 A
1 A
25972553 GACTTTGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
39 20 0.56
40 15 0.42
41 1 0.03
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.37
Consensus pattern (38 bp):
ACAAATTACTAAATCTCTTAAAAATTACTGAATTCCTT
Found at i:25974260 original size:78 final size:79
Alignment explanation
Indices: 25974166--25974313 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 79
25974156 ATTATTGAAT
* *** * *
25974166 TAAATCTTTTACACAATTATTGAATCTCTTATAA-ATT-C-TAAATTTCTTACAAAAGTTCTTAA
1 TAAATCTCTTACACAATTACACAATCTCTTA-AACATTACGT-AATTTCTTACAAAAGTACTAAA
25974228 TTTCTTACAAACCTAC
64 TTTCTTACAAACCTAC
*
25974244 TAAATCTCTTAGACAATTACACAATCTCTTAAACATTACGTAATTTCTTACAAAAGTACTAAATT
1 TAAATCTCTTACACAATTACACAATCTCTTAAACATTACGTAATTTCTTACAAAAGTACTAAATT
25974309 TCTTA
66 TCTTA
25974314 AACTATTATC
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.03
78 29 0.48
79 28 0.47
80 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.40
Consensus pattern (79 bp):
TAAATCTCTTACACAATTACACAATCTCTTAAACATTACGTAATTTCTTACAAAAGTACTAAATT
TCTTACAAACCTAC
Found at i:25974310 original size:20 final size:20
Alignment explanation
Indices: 25974203--25974343 Score: 85
Period size: 20 Copynumber: 7.1 Consensus size: 20
25974193 CTTATAAATT
*
25974203 CTAAATTTCTTACAAAAGTT
1 CTAAATTTCTTACAAAAGTA
* **
25974223 CTTAATTTCTTACAAACCTA
1 CTAAATTTCTTACAAAAGTA
* * * *
25974243 CTAAATCTCTTAGACAATTA
1 CTAAATTTCTTACAAAAGTA
* * *
25974263 C-ACAATCTCTTA-AACATTA
1 CTA-AATTTCTTACAAAAGTA
25974282 CGT-AATTTCTTACAAAAGTA
1 C-TAAATTTCTTACAAAAGTA
* *
25974302 CTAAATTTCTTA-AACTATTA
1 CTAAATTTCTTACAA-AAGTA
*
25974322 -TCAAATTTCTTAAAAAAGTA
1 CT-AAATTTCTTACAAAAGTA
25974342 CT
1 CT
25974344 TAAAATATTA
Statistics
Matches: 93, Mismatches: 19, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
19 19 0.20
20 71 0.76
21 3 0.03
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (20 bp):
CTAAATTTCTTACAAAAGTA
Found at i:25974512 original size:35 final size:37
Alignment explanation
Indices: 25974473--25974555 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 37
25974463 ACTAAATATA
*
25974473 TTACAAGATTATTA-AATTTAAGA-TTATTGAATCTC
1 TTACAAGATTACTATAATTTAAGATTTATTGAATCTC
** * *
25974508 TTACAA-ATTACTATTTTTTAGGATTTTTTGAATCTC
1 TTACAAGATTACTATAATTTAAGATTTATTGAATCTC
*
25974544 TTAAAAGATTAC
1 TTACAAGATTAC
25974556 CAAATATCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 6 0.15
35 12 0.31
36 16 0.41
37 5 0.13
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (37 bp):
TTACAAGATTACTATAATTTAAGATTTATTGAATCTC
Found at i:25987939 original size:25 final size:25
Alignment explanation
Indices: 25987910--25987958 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
25987900 GCTTTAAACC
*
25987910 ATACAAATTTTTCATCTTTTCGGAT
1 ATACAAATTTCTCATCTTTTCGGAT
25987935 ATACAAATTTCTCATCTTTTCGGA
1 ATACAAATTTCTCATCTTTTCGGA
25987959 AAAGTAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (25 bp):
ATACAAATTTCTCATCTTTTCGGAT
Found at i:25990813 original size:111 final size:110
Alignment explanation
Indices: 25990643--25990982 Score: 436
Period size: 111 Copynumber: 3.1 Consensus size: 110
25990633 TTGTCGTTAT
* * * * * * *
25990643 GTTTCAAGTAATGACAGTTT-GCTGGACTTTTACTCATGTTTCAAGTTATGACAACCCGCTGAAC
1 GTTTCAAGTTATGACA-TTTCGTTGGACTTGTACTCACGTTTCAAGTTATGGC-ATCCGCTGGAC
* * *
25990707 TTGTCCT-AT-CGTATCAAGTTATGACATTCCGCTAGAATTTTCCTCAC
64 TTATCGTCATGC-T-TCAAGTTATGACATTCCGCTAGACTTTTCCTCAC
*
25990754 GTTTCAAGTTATGACATTTCGTTGGACTTGTCCTCACGTTTCAAGTTATGGCTATCCGCTGGACT
1 GTTTCAAGTTATGACATTTCGTTGGACTTGTACTCACGTTTCAAGTTATGGC-ATCCGCTGGACT
*
25990819 TATCGTCATGCTTCAAGTTATGACAATCCGCTAGACTTTTCCTCAC
65 TATCGTCATGCTTCAAGTTATGACATTCCGCTAGACTTTTCCTCAC
* *
25990865 GTTTCAAGTTATGACATTTCGTTGGACTTGTTCTCACATTTCAAGTTATGGCAGTCCGCTGGACT
1 GTTTCAAGTTATGACATTTCGTTGGACTTGTACTCACGTTTCAAGTTATGGCA-TCCGCTGGACT
* * *
25990930 TATCGTCATGCTTCAAGTTATGACAATT-CGCTGGACTTGTCCTCAT
65 TATCGTCATGCTTCAAGTTATGAC-ATTCCGCTAGACTTTTCCTCAC
25990976 GTTTCAA
1 GTTTCAA
25990983 TATATGATAG
Statistics
Matches: 205, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
110 4 0.02
111 195 0.95
112 5 0.02
113 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (110 bp):
GTTTCAAGTTATGACATTTCGTTGGACTTGTACTCACGTTTCAAGTTATGGCATCCGCTGGACTT
ATCGTCATGCTTCAAGTTATGACATTCCGCTAGACTTTTCCTCAC
Found at i:25990989 original size:37 final size:37
Alignment explanation
Indices: 25990630--25990982 Score: 323
Period size: 37 Copynumber: 9.5 Consensus size: 37
25990620 TAGTCTGCTA
* * * * *
25990630 GACTTGTCGTTATGTTTCAAGTAATGACAGTTTGCTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * **
25990667 GACTTTTACTCATGTTTCAAGTTATGACAACCCGCTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * *
25990704 AACTTGTCCT-ATCGTATCAAGTTATGAC-ATTCCGCTA
1 GACTTGTCCTCAT-GTTTCAAGTTATGACAATT-CGCTG
* * * * *
25990741 GAATTTTCCTCACGTTTCAAGTTATGACATTTCGTTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * * *
25990778 GACTTGTCCTCACGTTTCAAGTTATGGCTATCCGCTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * * * *
25990815 GACTTATCGTCATGCTTCAAGTTATGACAATCCGCTA
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * * *
25990852 GACTTTTCCTCACGTTTCAAGTTATGACATTTCGTTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* ** * * *
25990889 GACTTGTTCTCACATTTCAAGTTATGGCAGTCCGCTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
* * *
25990926 GACTTATCGTCATGCTTCAAGTTATGACAATTCGCTG
1 GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
25990963 GACTTGTCCTCATGTTTCAA
1 GACTTGTCCTCATGTTTCAA
25990983 TATATGATAG
Statistics
Matches: 247, Mismatches: 65, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
36 3 0.01
37 241 0.98
38 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (37 bp):
GACTTGTCCTCATGTTTCAAGTTATGACAATTCGCTG
Found at i:25991188 original size:22 final size:21
Alignment explanation
Indices: 25991148--25991208 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
25991138 AAGTGTTGAA
* * *
25991148 AATGTGGAAATTTTGAAATTTT
1 AATGTGGAAA-GTTAAAAATTT
25991170 AATGTGGAAAGTTAAAAATTT
1 AATGTGGAAAGTTAAAAATTT
*
25991191 AAGTGTTGAAAGTTAAAA
1 AA-TGTGGAAAGTTAAAA
25991209 TTGTAAGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.29
22 24 0.71
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (21 bp):
AATGTGGAAAGTTAAAAATTT
Found at i:25991215 original size:22 final size:22
Alignment explanation
Indices: 25991167--25991223 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
25991157 ATTTTGAAAT
*
25991167 TTTAA-TGTGGAAAGTTAAAAA
1 TTTAAGTGTTGAAAGTTAAAAA
25991188 TTTAAGTGTTGAAAGTT-AAAA
1 TTTAAGTGTTGAAAGTTAAAAA
25991209 TTGTAAGTGTTGAAA
1 TT-TAAGTGTTGAAA
25991224 TGCAGAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 11 0.33
22 22 0.67
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (22 bp):
TTTAAGTGTTGAAAGTTAAAAA
Found at i:25992453 original size:9 final size:9
Alignment explanation
Indices: 25992425--25992458 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
25992415 ATACAATAAG
25992425 AATTTCAAA
1 AATTTCAAA
*
25992434 AATTTTTAAA
1 AA-TTTCAAA
25992444 AATTTCAAA
1 AATTTCAAA
25992453 AATTTC
1 AATTTC
25992459 TTTGAGTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTTCAAA
Found at i:25999950 original size:49 final size:49
Alignment explanation
Indices: 25999873--25999992 Score: 177
Period size: 49 Copynumber: 2.4 Consensus size: 49
25999863 CTCAGCCAAA
* * * * *
25999873 GTAGAATATGAAAATAGTAAAAAGCATCATTGTCGGGCCACCTGGGATG
1 GTAGAATATGAAAATAGTGAAAACCATCAATGTCGAGCCACCTGAGATG
*
25999922 GTAGAATATGCAAATAGTGAAAACCATCAATGTCGAGCCACCTGAGATG
1 GTAGAATATGAAAATAGTGAAAACCATCAATGTCGAGCCACCTGAGATG
*
25999971 GTAGAATATGTAAATAGTGAAA
1 GTAGAATATGAAAATAGTGAAA
25999993 GTCATCGTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (49 bp):
GTAGAATATGAAAATAGTGAAAACCATCAATGTCGAGCCACCTGAGATG
Found at i:26002898 original size:13 final size:14
Alignment explanation
Indices: 26002863--26002892 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26002853 GAAAATTTGT
*
26002863 AAAAAAATTCTCTG
1 AAAAAAATTCTCAG
26002877 AAAAAAATTCTCAG
1 AAAAAAATTCTCAG
26002891 AA
1 AA
26002893 GAAATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAAAAATTCTCAG
Found at i:26008183 original size:41 final size:41
Alignment explanation
Indices: 26008111--26008346 Score: 314
Period size: 41 Copynumber: 5.8 Consensus size: 41
26008101 AGATTTTATA
*
26008111 ATTAGCGGCGC-TTTTCTAAAATCGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTTTTC-AAAAACGCCGCTAAAGGCCAGAGC
* * *
26008152 ATTAGTGGCGCTTTTTCAAAAACGCCTCTAAAGGCTAGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
* * * *
26008193 ATTAGTGGCGCTTTTTCAAAAATGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
* * *
26008234 ATTAGCAGCACTTTTTGAAAAACGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
*
26008275 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTA-AGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCC-AGAGC
**
26008316 ATTAGCGGCAATTTTTCAAAAACGCCGCTAA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAA
26008347 GTACCCCAAA
Statistics
Matches: 171, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
41 165 0.96
42 6 0.04
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGC
Found at i:26008331 original size:123 final size:123
Alignment explanation
Indices: 26008111--26008346 Score: 350
Period size: 123 Copynumber: 1.9 Consensus size: 123
26008101 AGATTTTATA
* * * *
26008111 ATTAGCGGCGCTTTTCTAAAATCGCCGCTAAAGGCCAGAGCATTAGTGGCGCTTTTTCAAAAACG
1 ATTAGCAGCACTTTTCTAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTTTCAAAAACG
* * * ** *
26008176 CCTCTAAAGGCTAGAGCATTAGTGGCGCTTTTTCAAAAATGCCGCTAAAGCCCCGAGC
66 CCGCTAAAGCCTAGAGCATTAGCGGCAATTTTTCAAAAACGCCGCTAAAGCCCCGAGC
26008234 ATTAGCAGCACTTTT-TGAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTTTCAAAAAC
1 ATTAGCAGCACTTTTCT-AAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTTTCAAAAAC
26008298 GCCGCTAAAGCCCTA-AGCATTAGCGGCAATTTTTCAAAAACGCCGCTAA
65 GCCGCTAAAG-CCTAGAGCATTAGCGGCAATTTTTCAAAAACGCCGCTAA
26008347 GTACCCCAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
122 1 0.01
123 97 0.96
124 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (123 bp):
ATTAGCAGCACTTTTCTAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTTTTCAAAAACG
CCGCTAAAGCCTAGAGCATTAGCGGCAATTTTTCAAAAACGCCGCTAAAGCCCCGAGC
Found at i:26008511 original size:40 final size:39
Alignment explanation
Indices: 26008386--26008521 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
26008376 TGGGCTTAGG
* * * *
26008386 TTTTTTGCGGCGCTTTTTGGAAAA-CGCTGCGAATGCTTA
1 TTTTTAGCGGCG-TTTTTGCAAAAGCGCCGCTAATGCTTA
* * *
26008425 TTTTTAGCAGCG-TTTTCCAAAATGCGCCGCTAATGCTCAA
1 TTTTTAGCGGCGTTTTTGCAAAA-GCGCCGCTAATGCT-TA
* *
26008465 TCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAATGCTT-A
*
26008505 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
26008522 TGTCCAAACA
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
37 8 0.10
39 21 0.27
40 41 0.53
41 8 0.10
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAATGCTTA
Found at i:26008536 original size:41 final size:40
Alignment explanation
Indices: 26008451--26008538 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
26008441 CCAAAATGCG
*
26008451 CCGCTAATGCTCAATCTTTAGCGGCGTTTTTGTAAAAGCG
1 CCGCTAATGCTCAATCTTTAGCGGCGTTTTTGTAAAAGCA
** * * *
26008491 CCGCTAATGCTTGATTTTTAGTGGCGTTTTTTGTCCAAA-CA
1 CCGCTAATGCTCAATCTTTAGCGGCG-TTTTTGT-AAAAGCA
26008532 CCGCTAA
1 CCGCTAA
26008539 AAATGCCGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 22 0.55
41 15 0.38
42 3 0.08
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (40 bp):
CCGCTAATGCTCAATCTTTAGCGGCGTTTTTGTAAAAGCA
Found at i:26010374 original size:34 final size:34
Alignment explanation
Indices: 26010331--26010395 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
26010321 TACTTGGGTG
* *
26010331 TATGAGTACACTAATATGGGAACTCGTACATTTT
1 TATGAGTACACTAACATGGGAACTCGAACATTTT
* *
26010365 TATGAGTACACTAGCATGGGTACTCGAACAT
1 TATGAGTACACTAACATGGGAACTCGAACAT
26010396 ATGCCTCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (34 bp):
TATGAGTACACTAACATGGGAACTCGAACATTTT
Found at i:26014408 original size:46 final size:45
Alignment explanation
Indices: 26014301--26014498 Score: 231
Period size: 46 Copynumber: 4.6 Consensus size: 45
26014291 TTACTATGAT
* * *
26014301 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAATGTAGCTAAGCTAC
*
26014344 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAAGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAATGTAGCT-AAGCTAC
26014390 CACTTATCACTTTTTCACTTGATCAGAT-AA-GTA--T-AG----
1 CACTTATCACTTTTTCACTTGATCAGATAAATGTAGCTAAGCTAC
*
26014426 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTTTCACTTGATCAGATAAATGTAGCT-AAGCTAC
*
26014472 CACTTATCA-TTTTATCTCTTGATCAGA
1 CACTTATCACTTTT-TCACTTGATCAGA
26014499 AGTACTCAAA
Statistics
Matches: 136, Mismatches: 5, Indels: 25
0.82 0.03 0.15
Matches are distributed among these distances:
36 28 0.21
37 1 0.01
38 3 0.02
40 3 0.02
42 3 0.02
43 10 0.07
44 8 0.06
45 26 0.19
46 54 0.40
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (45 bp):
CACTTATCACTTTTTCACTTGATCAGATAAATGTAGCTAAGCTAC
Found at i:26014431 original size:36 final size:36
Alignment explanation
Indices: 26014390--26014462 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
26014380 CTAAAGCTAC
26014390 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
26014426 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
26014462 C
1 C
26014463 TAAAGCTACC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
Found at i:26014451 original size:82 final size:82
Alignment explanation
Indices: 26014344--26014498 Score: 267
Period size: 82 Copynumber: 1.9 Consensus size: 82
26014334 GCTAGGCTAC
26014344 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACTTTT-TCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAAGCTACCACTTATCA-TTTTATCAC
26014408 TTGATCAGATAAGTATAG
65 TTGATCAGATAAGTATAG
* * *
26014426 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCATTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAAGCTACCACTTATCATTTTATCACT
26014491 TGATCAGA
66 TGATCAGA
26014499 AGTACTCAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 4 0.06
82 65 0.94
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAATGTAGCTAAAGCTACCACTTATCATTTTATCACT
TGATCAGATAAGTATAG
Found at i:26021832 original size:21 final size:21
Alignment explanation
Indices: 26021800--26021871 Score: 126
Period size: 21 Copynumber: 3.4 Consensus size: 21
26021790 AAAACAACCA
26021800 TTTCTCCCCTCGTTCTTGCTGG
1 TTTCT-CCCTCGTTCTTGCTGG
26021822 TTTCTCCCTCGTTCTTGCTGG
1 TTTCTCCCTCGTTCTTGCTGG
*
26021843 TTTCTCCCTCATTCTTGCTGG
1 TTTCTCCCTCGTTCTTGCTGG
26021864 TTTCTCCC
1 TTTCTCCC
26021872 ATCTTTTTTG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
21 44 0.90
22 5 0.10
ACGTcount: A:0.01, C:0.36, G:0.15, T:0.47
Consensus pattern (21 bp):
TTTCTCCCTCGTTCTTGCTGG
Found at i:26022901 original size:31 final size:31
Alignment explanation
Indices: 26022863--26022924 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26022853 AGGCAAATTA
26022863 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
26022894 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
26022925 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:26030415 original size:21 final size:21
Alignment explanation
Indices: 26030362--26030416 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
26030352 ACCATTGTTT
** *
26030362 CTAATCTCACTACTACAGTAT
1 CTAATCTCACCGCTACAGTAA
*
26030383 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
26030404 CTAATCTCACCGC
1 CTAATCTCACCGC
26030417 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.36, G:0.07, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:26030963 original size:15 final size:15
Alignment explanation
Indices: 26030943--26030976 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
26030933 ACTTGGTTCA
26030943 TCTATTCTATTAATT
1 TCTATTCTATTAATT
26030958 TCTATTCTATTAATT
1 TCTATTCTATTAATT
26030973 TCTA
1 TCTA
26030977 ACCAAATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (15 bp):
TCTATTCTATTAATT
Found at i:26038394 original size:21 final size:22
Alignment explanation
Indices: 26038376--26038417 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26038366 ATTGTTTTAT
*
26038376 TATTG-TTTGCTGCCATTTTGA
1 TATTGTTTTGCTACCATTTTGA
26038397 TATTGTTTTGCTACCATTTTG
1 TATTGTTTTGCTACCATTTTG
26038418 CAATTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (22 bp):
TATTGTTTTGCTACCATTTTGA
Found at i:26041319 original size:50 final size:53
Alignment explanation
Indices: 26041243--26041363 Score: 124
Period size: 50 Copynumber: 2.3 Consensus size: 53
26041233 ATTTTTGGGT
* * * *
26041243 TGTTGGGACACTAAT-GACTAGCACCCTTGTACTAGA-TT-AAAAAAAATTGG
1 TGTTGGGACACTAATGGTCTAGCACCCTTATACCAAATTTAAAAAAAAATTGG
* *
26041293 TGTTGGGACACTAATGGTC-GGTACCCTTATACCAAATTTAAAAAAAAAATTGG
1 TGTTGGGACACTAATGGTCTAGCACCCTTATACCAAATTT-AAAAAAAAATTGG
* **
26041346 TGCTAAGACACTAATGGT
1 TGTTGGGACACTAATGGT
26041364 TGACACCCTT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 27 0.47
51 4 0.07
53 27 0.47
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (53 bp):
TGTTGGGACACTAATGGTCTAGCACCCTTATACCAAATTTAAAAAAAAATTGG
Found at i:26043197 original size:53 final size:52
Alignment explanation
Indices: 26043087--26043272 Score: 209
Period size: 53 Copynumber: 3.5 Consensus size: 52
26043077 TATATTGAAG
* * *
26043087 GGGTGCCGACCATCAGTGTCCTAGCA--CCATTTTTTTTTAAAATTTGGTACTA
1 GGGTGCCGACCATCAGTGTCCCAGCACCCCAATTTTTTTT--AATTTGGTACAA
*
26043139 GGGTGCC-AGCCATCAGTGTCCCAACACCCCAATTTTTTTTAAGTTTGGTACAA
1 GGGTGCCGA-CCATCAGTGTCCCAGCACCCCAATTTTTTTTAA-TTTGGTACAA
* * * *
26043192 GGGTG-CTAGCCATCAATGTCCCAGCACTCAAATTTTTTTTTAATTTGGTACAA
1 GGGTGCCGA-CCATCAGTGTCCCAGCACCCCAA-TTTTTTTTAATTTGGTACAA
*
26043245 TGGTGCCGACCATCAGTGTCCCAGCACC
1 GGGTGCCGACCATCAGTGTCCCAGCACC
26043273 TAAATAAATA
Statistics
Matches: 115, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
51 1 0.01
52 25 0.22
53 66 0.57
54 23 0.20
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (52 bp):
GGGTGCCGACCATCAGTGTCCCAGCACCCCAATTTTTTTTAATTTGGTACAA
Found at i:26045829 original size:22 final size:22
Alignment explanation
Indices: 26045804--26045846 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
26045794 TTAAATTCTT
26045804 TAATTGTAGTGTTTGGTGAATC
1 TAATTGTAGTGTTTGGTGAATC
26045826 TAATTGTAGTGTTTGGTGAAT
1 TAATTGTAGTGTTTGGTGAAT
26045847 AGAGGTTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (22 bp):
TAATTGTAGTGTTTGGTGAATC
Found at i:26048823 original size:131 final size:131
Alignment explanation
Indices: 26048644--26048905 Score: 524
Period size: 131 Copynumber: 2.0 Consensus size: 131
26048634 ACCACCCGTG
26048644 TGGTGTCAGTTTAAAGCAAGGATGAGTATTCATTGAAATATCTCCATCAACATCTTATTCTTACT
1 TGGTGTCAGTTTAAAGCAAGGATGAGTATTCATTGAAATATCTCCATCAACATCTTATTCTTACT
26048709 GACAAATTGCATTTTCCACAATGGTTTTGCTTTTTTCCTGAAAGTTCACTGCCAATGTTGGAGAA
66 GACAAATTGCATTTTCCACAATGGTTTTGCTTTTTTCCTGAAAGTTCACTGCCAATGTTGGAGAA
26048774 A
131 A
26048775 TGGTGTCAGTTTAAAGCAAGGATGAGTATTCATTGAAATATCTCCATCAACATCTTATTCTTACT
1 TGGTGTCAGTTTAAAGCAAGGATGAGTATTCATTGAAATATCTCCATCAACATCTTATTCTTACT
26048840 GACAAATTGCATTTTCCACAATGGTTTTGCTTTTTTCCTGAAAGTTCACTGCCAATGTTGGAGAA
66 GACAAATTGCATTTTCCACAATGGTTTTGCTTTTTTCCTGAAAGTTCACTGCCAATGTTGGAGAA
26048905 A
131 A
26048906 CGTATATTTT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 131 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37
Consensus pattern (131 bp):
TGGTGTCAGTTTAAAGCAAGGATGAGTATTCATTGAAATATCTCCATCAACATCTTATTCTTACT
GACAAATTGCATTTTCCACAATGGTTTTGCTTTTTTCCTGAAAGTTCACTGCCAATGTTGGAGAA
A
Found at i:26049614 original size:16 final size:16
Alignment explanation
Indices: 26049577--26049618 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26049567 TTAATCATAT
*
26049577 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
26049593 TT-AAATATATTATAA
1 TTAAAATATATTATAA
26049608 TTAAAATATAT
1 TTAAAATATAT
26049619 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:26049625 original size:14 final size:15
Alignment explanation
Indices: 26049586--26049627 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26049576 TTTAAACATA
*
26049586 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26049601 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26049615 A-TATAATTTAATA
1 ATTATAATTAAATA
26049628 AAATACTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26049736 original size:16 final size:16
Alignment explanation
Indices: 26049692--26049738 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
26049682 TACTATAAAC
*
26049692 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
26049708 TATTATT-AAATATAT
1 TATAATTAAAATATAT
26049723 TATAATTAAAATATAT
1 TATAATTAAAATATAT
26049739 AATATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:26049856 original size:59 final size:59
Alignment explanation
Indices: 26049673--26049981 Score: 197
Period size: 59 Copynumber: 5.2 Consensus size: 59
26049663 CTCAAACCAT
** *
26049673 AATATATGATACTATAAACTATAATTTAACATAATTATTATTAAATATATTATAATTAA
1 AATATATGATACTATAAAAAATAATTTAACATAATTATTATTAAATATATTTTAATTAA
* ** * * *
26049732 AATATATAATA-TA-AAAAAATTCTTAATAAC-TAA-TATTCTTATATGA-ATTTACTCAAATCA
1 AATATATGATACTATAAAAAATAATT--TAACATAATTATTATTAAAT-ATATTT--T--AATTA
*
26049792 T
59 A
*
26049793 AATATATGATACTATAAAAGATAATTTAACATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAAAATAATTTAACATAATTATTATTAAATATATTTTAATTAA
* ** * * * * ** * *
26049852 AATATAT-A-A-TTTAATAAAATTCTTAATAATCA-ATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATACTATAA-AAAATAATT--TAA-CATA-ATTATTAT-TAAATATATTTTAATTAA
* * *
26049913 AATATATGATACTATAAAATATAATTTGAA-ATAATTAATATTAAATATGTTTTAATTAA
1 AATATATGATACTATAAAAAATAATTT-AACATAATTATTATTAAATATATTTTAATTAA
26049972 AATATATGAT
1 AATATATGAT
26049982 TTAATAAAAT
Statistics
Matches: 183, Mismatches: 44, Indels: 46
0.67 0.16 0.17
Matches are distributed among these distances:
56 4 0.02
57 26 0.14
58 7 0.04
59 50 0.27
60 16 0.09
61 39 0.21
62 9 0.05
63 28 0.15
64 4 0.02
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (59 bp):
AATATATGATACTATAAAAAATAATTTAACATAATTATTATTAAATATATTTTAATTAA
Found at i:26049858 original size:18 final size:17
Alignment explanation
Indices: 26049837--26049871 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26049827 TTATTATTAA
*
26049837 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26049855 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26049872 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26049930 original size:61 final size:59
Alignment explanation
Indices: 26049625--26049932 Score: 202
Period size: 61 Copynumber: 5.1 Consensus size: 59
26049615 ATATAATTTA
* *
26049625 ATAAAATACTTAATAATCAATATTCTTATATGAATTTACTCAAACCATAATATATGATACT
1 ATAAAAT-CTTAATAA-CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * * * * * * *
26049686 AT-AAA-CTATAATTTAAC-ATAATTATTAT-TAAATATATTATAATTAAAATATATAATA-T
1 ATAAAATCT-TAA--TAACAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* *
26049744 AAAAAAATTCTTAATAACTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAA-TCTTAATAAC-AATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
** * * * * ** * * * *
26049806 ATAAAA-GATAATTTAAC-ATAATTATTAT-TAAATATATTTTAATTAAAATATATAAT-TT
1 ATAAAATCTTAA--TAACAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
26049864 AATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAA-TCTTAATAA-CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
26049926 ATAAAAT
1 ATAAAAT
26049933 ATAATTTGAA
Statistics
Matches: 180, Mismatches: 45, Indels: 45
0.67 0.17 0.17
Matches are distributed among these distances:
58 4 0.02
59 64 0.36
60 37 0.21
61 71 0.39
62 4 0.02
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (59 bp):
ATAAAATCTTAATAACAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:26049991 original size:17 final size:18
Alignment explanation
Indices: 26049957--26049991 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26049947 TTAATATTAA
*
26049957 ATATGTTTTAATTAAAAT
1 ATATGATTTAATTAAAAT
26049975 ATATGATTTAA-TAAAAT
1 ATATGATTTAATTAAAAT
26049992 TTAAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (18 bp):
ATATGATTTAATTAAAAT
Found at i:26050001 original size:120 final size:120
Alignment explanation
Indices: 26049575--26049992 Score: 687
Period size: 120 Copynumber: 3.5 Consensus size: 120
26049565 ATTTAATCAT
*
26049575 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATACTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
26049640 ATCAATATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAACTATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* *
26049696 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATATAAAAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
26049761 -CTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 TC-AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
26049816 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
26049881 TCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* * * *
26049936 ATTTGAA-ATAATTAATATTAAATATGTTTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
26049993 TAAAATAATT
Statistics
Matches: 280, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
119 1 0.00
120 272 0.97
121 7 0.03
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Found at i:26050063 original size:26 final size:26
Alignment explanation
Indices: 26050033--26050091 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
26050023 TATGAATTTG
*
26050033 TATAATTTAA-AATAATTATTATTTCA
1 TATAATTTAATAATAA-TATAATTTCA
26050059 TATAATTTAATAATAATATAATTTCA
1 TATAATTTAATAATAATATAATTTCA
*
26050085 TAAAATT
1 TATAATT
26050092 CTTGATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (26 bp):
TATAATTTAATAATAATATAATTTCA
Found at i:26050134 original size:44 final size:46
Alignment explanation
Indices: 26050074--26050395 Score: 242
Period size: 44 Copynumber: 7.0 Consensus size: 46
26050064 TTTAATAATA
*
26050074 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTT
1 ATATAATTT-ATAAAATTCTTAATAATAAATTTTCTTATATGAATTT
** * * *
26050121 ATATAA-TT-TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGAT
1 ATATAATTTATAAAATTCTTAATAATAAAT-T-TTCTTATATGAAT-TT
*
26050165 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTT
1 ATATAATTT-ATAAAATTCTTAATAATAAATTTTCTTATATGAATTT
** * * *
26050212 ATATAA-TT-TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGAT
1 ATATAATTTATAAAATTCTTAATAATAAAT-T-TTCTTATATGAAT-TT
*
26050256 ATATAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTT
1 ATATAATTT-ATAAAATTCTTAATAATAAATTTTCTTATATGAATTT
** * * *
26050303 ATATAA-TT-TAAAATAATTAATATTAAATATAAT-TTA-AT-AATGAT
1 ATATAATTTATAAAATTCTTAATAATAAAT-T-TTCTTATATGAAT-TT
*
26050347 ATATAATTTCATAAAATTCTTAATAATAAAATGTTCTTATATGAATTT
1 ATATAATTT-ATAAAATTCTTAATAAT-AAATTTTCTTATATGAATTT
26050395 A
1 A
26050396 CTAAACTCAT
Statistics
Matches: 211, Mismatches: 36, Indels: 55
0.70 0.12 0.18
Matches are distributed among these distances:
43 9 0.04
44 75 0.36
45 20 0.09
46 18 0.09
47 72 0.34
48 14 0.07
49 3 0.01
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (46 bp):
ATATAATTTATAAAATTCTTAATAATAAATTTTCTTATATGAATTT
Found at i:26050209 original size:91 final size:91
Alignment explanation
Indices: 26050008--26050395 Score: 699
Period size: 91 Copynumber: 4.3 Consensus size: 91
26049998 TAATTATAAC
* * **
26050008 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTTCATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
26050073 -A-ATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
26050097 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
26050162 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
26050188 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
26050253 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
26050279 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
26050344 GATATATAATTTCATAAAATTCTTAA
66 GATATATAATTTCATAAAATTCTTGA
*
26050370 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
26050396 CTAAACTCAT
Statistics
Matches: 290, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
89 61 0.21
90 1 0.00
91 208 0.72
92 20 0.07
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:26053556 original size:16 final size:16
Alignment explanation
Indices: 26053535--26053565 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
26053525 TACCAAATAC
26053535 TTGTTTTTTAATCAAG
1 TTGTTTTTTAATCAAG
26053551 TTGTTTTTTAATCAA
1 TTGTTTTTTAATCAA
26053566 CCATAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.58
Consensus pattern (16 bp):
TTGTTTTTTAATCAAG
Found at i:26053654 original size:62 final size:65
Alignment explanation
Indices: 26053569--26053696 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 65
26053559 TAATCAACCA
*
26053569 TAATAATAATGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTT
1 TAATAATAATGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTT
*
26053634 TAAT-ATATTGAATA-TT-TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTT
1 TAATAATAATGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTT
26053696 T
1 T
26053697 TATTTTATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
62 46 0.75
63 2 0.03
64 9 0.15
65 4 0.07
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.51
Consensus pattern (65 bp):
TAATAATAATGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTT
Found at i:26053691 original size:30 final size:30
Alignment explanation
Indices: 26053595--26053691 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
26053585 TTGTTTTTTA
26053595 ATCAAGTTGTTTACTTGATTATATCTAATG
1 ATCAAGTTGTTTACTTGATTATATCTAATG
* * * * ** *
26053625 ATCCAA-TT-TTAATATATTGAATATTTTTTTTA
1 AT-CAAGTTGTT--TA-CTTGATTATATCTAATG
26053657 ATCAAGTTGTTTACTTGATTATATCTAATG
1 ATCAAGTTGTTTACTTGATTATATCTAATG
26053687 ATCAA
1 ATCAA
26053692 ATTTTTATTT
Statistics
Matches: 47, Mismatches: 14, Indels: 12
0.64 0.19 0.16
Matches are distributed among these distances:
29 2 0.04
30 19 0.40
31 10 0.21
32 14 0.30
33 2 0.04
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (30 bp):
ATCAAGTTGTTTACTTGATTATATCTAATG
Found at i:26053816 original size:24 final size:26
Alignment explanation
Indices: 26053764--26053813 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26053754 TATATGTAAT
26053764 ATTATTAAAATAATATTTTTAATTTTA
1 ATTATTAAAATAATATTTTTAA-TTTA
*
26053791 ATTATTTAAA-AATATTTTTAATT
1 ATTATTAAAATAATATTTTTAATT
26053814 AATGCGTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 11 0.50
27 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTTAATTTA
Found at i:26073838 original size:23 final size:22
Alignment explanation
Indices: 26073808--26073852 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 22
26073798 TGAGTACAAT
26073808 AAAAATGATGAAATAAAATAATA
1 AAAAATGATGAAATAAAA-AATA
26073831 AAAAATGATGAAATAAAAAATA
1 AAAAATGATGAAATAAAAAATA
26073853 TTATATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (22 bp):
AAAAATGATGAAATAAAAAATA
Found at i:26074094 original size:20 final size:22
Alignment explanation
Indices: 26074069--26074108 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26074059 TACAGCAAGT
*
26074069 ACAT-GGACTTAATT-AAATGA
1 ACATGGGACTAAATTGAAATGA
26074089 ACATGGGACTAAATTGAAAT
1 ACATGGGACTAAATTGAAAT
26074109 TGTGAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (22 bp):
ACATGGGACTAAATTGAAATGA
Found at i:26076008 original size:94 final size:94
Alignment explanation
Indices: 26075889--26076116 Score: 305
Period size: 94 Copynumber: 2.4 Consensus size: 94
26075879 ACTTCAGGGG
* * * * *
26075889 TATAAGATTTGTAGCTTCATCTTGCTCTACTACAACTTCAAGGAGATAAGATTTGCTATGGTAGC
1 TATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAAGGAGATAAGATTTGATATGATAAC
* *
26075954 TTCAATTCGATCCACTGCATCTTTAGAGA
66 TTCAATCCGATCCACTGCATATTTAGAGA
* * * *
26075983 TATAGGATTTGTAGCTTCATCTTGCT-TCACTGTATCTTCAAGGAGATCAGATTTGATATTATAA
1 TATAGGATTTGTAGCTTCATCTTGCTCT-ACTGCAACTTCAAGGAGATAAGATTTGATATGATAA
** *
26076047 CTTTGATCCGATCCACTGCATATTTAGGGA
65 CTTCAATCCGATCCACTGCATATTTAGAGA
*
26076077 TATAGGATTTATAGCTTCATCTTGCTCTACTGCAACTTCA
1 TATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCA
26076117 GAGATATAAG
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
93 1 0.01
94 113 0.98
95 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (94 bp):
TATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAAGGAGATAAGATTTGATATGATAAC
TTCAATCCGATCCACTGCATATTTAGAGA
Found at i:26076146 original size:138 final size:138
Alignment explanation
Indices: 26075967--26076255 Score: 389
Period size: 138 Copynumber: 2.1 Consensus size: 138
26075957 AATTCGATCC
* * * * * * * * *
26075967 ACTGCATCTTTAGAGATATAGGATTTGTAGCTTCATCTTGCTTCACTGTATCTTCAAGGAGATCA
1 ACTGCAACTTCAGAGATATAAGACTTGTAGCTTCATCTTGCTCCACTGCAGCCTCAAGGAGATAA
* * * * * *
26076032 GATTTGATATTATAACTTTGATCCGATCCACTGCATATTTAGGGATATAGGATTTATAGCTTCAT
66 GATTCGACATTATAACTTTGATCCGATCCACTACATATTCAAGGATATAGAATTTATAGCTTCAT
26076097 CTTGCTCT
131 CTTGCTCT
*
26076105 ACTGCAACTTCAGAGATATAAGACTTGTAGCTTCATCTTGCTCCACTGCAGCCTCAGGGAGATAA
1 ACTGCAACTTCAGAGATATAAGACTTGTAGCTTCATCTTGCTCCACTGCAGCCTCAAGGAGATAA
* * * * *
26076170 GATTCGCCATTGTAACTTTGGTCTGATCCACTACATATTCAAGGATATAGAATTTGTAGCTTCAT
66 GATTCGACATTATAACTTTGATCCGATCCACTACATATTCAAGGATATAGAATTTATAGCTTCAT
26076235 CTTGCTCT
131 CTTGCTCT
26076243 ACTGCAACTTCAG
1 ACTGCAACTTCAG
26076256 GGGAGATAAG
Statistics
Matches: 130, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 130 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (138 bp):
ACTGCAACTTCAGAGATATAAGACTTGTAGCTTCATCTTGCTCCACTGCAGCCTCAAGGAGATAA
GATTCGACATTATAACTTTGATCCGATCCACTACATATTCAAGGATATAGAATTTATAGCTTCAT
CTTGCTCT
Found at i:26076332 original size:95 final size:93
Alignment explanation
Indices: 26076132--26076364 Score: 243
Period size: 95 Copynumber: 2.5 Consensus size: 93
26076122 ATAAGACTTG
* * * * * *
26076132 TAGCTTCATCTTGCTCCACTGCAGCCTCAGGGAGATAAGATTCGCCATTGTAACTTTGGTCTGAT
1 TAGCTTCATCTTGCT-CACTGCAACTTCAGGGAGATAAGATTTGACATTATAACTTTGATCTGAT
* *
26076197 CCACTACATATTCAAGGATATAGAATTTG
65 CCACTACATATTCAAGGATAAAGAATTTA
* *
26076226 TAGCTTCATCTTGCTCTACTGCAACTTCAGGGGAGATAAGATTTGATATTATAATTTTGATCTGA
1 TAGCTTCATCTTGCTC-ACTGCAACTTCA-GGGAGATAAGATTTGACATTATAACTTTGATCTGA
* * * * *
26076291 TCCATTGCATCTTTAGGGATAAATG-ATTTA
64 TCCACTACATATTCAAGGATAAA-GAATTTA
* * * *
26076321 TAGTTTTATCTTGCTACACTGCAACTTTAAGGAGATAAGATTTG
1 TAGCTTCATCTTGCT-CACTGCAACTTCAGGGAGATAAGATTTG
26076365 TAGTTTCATC
Statistics
Matches: 116, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 1 0.01
94 39 0.34
95 74 0.64
96 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (93 bp):
TAGCTTCATCTTGCTCACTGCAACTTCAGGGAGATAAGATTTGACATTATAACTTTGATCTGATC
CACTACATATTCAAGGATAAAGAATTTA
Found at i:26076399 original size:44 final size:44
Alignment explanation
Indices: 26075766--26076402 Score: 202
Period size: 44 Copynumber: 13.8 Consensus size: 44
26075756 ATGTTACAGC
* * *
26075766 TTCATCTTGCTCCATTGCAACTTCAAGGAGATAAAATTTGCTGTTATAGT
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA-TT--TG---TAGT
* * * * *
26075816 TTCAATCTAT--TCTACTACAACTTCAGGGATATGAGATTTTTAGT
1 TTC-ATCT-TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* ** * * *
26075860 TTCAT-TCGAAACTACTACAACTTCAGGG-GTATAAGATTTGTAGC
1 TTCATCTTG-CTCCACTGCAACTTCAGGGAG-ATAAGATTTGTAGT
* * *
26075904 TTCATCTTGCTCTACTACAACTTCAAGGAGATAAGATTTGCTATGGT
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA--GT
* * * * * * * *
26075951 AGCTTCAAT-TCGATCCACTGCATCTTTAGAGATATAGGATTTGTAGC
1 ---TTC-ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * * * *
26075998 TTCATCTTGCTTCACTGTATCTTCAAGGAGATCAGATTTGATA-T
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGT
* * * * * *
26076042 TAT-AACTTTGATCCGATCCACTGCATA-TTTAGGGATATAGGATTTATAGC
1 T-TCATC-TTG---C--TCCACTGCA-ACTTCAGGGAGATAAGATTTGTAGT
* * * * *
26076092 TTCATCTTGCTCTACTGCAACTTCAGAGATATAAGACTTGTAGC
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* * *
26076136 TTCATCTTGCTCCACTGCAGCCTCAGGGAGATAAGATTCGCCATTGTAACT
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA-T-----TTGT-AGT
** * * * * *
26076187 TTGGTC-TGATCCACTACATA-TTCAAGGATAT-AGAATTTGTAGC
1 TTCATCTTGCTCCACTGCA-ACTTCAGGGAGATAAG-ATTTGTAGT
*
26076230 TTCATCTTGCTCTACTGCAACTTCAGGGGAGATAAGATTTGATA-T
1 TTCATCTTGCTCCACTGCAACTTCA-GGGAGATAAGATTTG-TAGT
* * * * * * *
26076275 TATAATTTTGATCTGATCCATTGCATCTTTAGGGATA-AATGATTTATAGT
1 T-TCATCTTG--C---TCCACTGCAACTTCAGGGAGATAA-GATTTGTAGT
* * * *
26076325 TTTATCTTGCTACACTGCAACTTTAAGGAGATAAGATTTGTAGT
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
* *
26076369 TTCATCTTACTCCACTGCAACTTTAGGGAGATAA
1 TTCATCTTGCTCCACTGCAACTTCAGGGAGATAA
26076403 AATTCGCCAT
Statistics
Matches: 431, Mismatches: 105, Indels: 108
0.67 0.16 0.17
Matches are distributed among these distances:
42 1 0.00
43 11 0.03
44 225 0.52
45 24 0.06
46 11 0.03
47 4 0.01
48 2 0.00
49 23 0.05
50 107 0.25
51 22 0.05
52 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (44 bp):
TTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGT
Found at i:26076454 original size:50 final size:50
Alignment explanation
Indices: 26076379--26076494 Score: 187
Period size: 50 Copynumber: 2.3 Consensus size: 50
26076369 TTCATCTTAC
* *
26076379 TCCACTGCAACTTTAGGGAGATAAAATTCGCCATTATAACTTTGATCCGA
1 TCCACTGCATCTTCAGGGAGATAAAATTCGCCATTATAACTTTGATCCGA
* **
26076429 TCCACTTCATCTTCAGGGAGATAAAATTTTCCATTATAACTTTGATCCGA
1 TCCACTGCATCTTCAGGGAGATAAAATTCGCCATTATAACTTTGATCCGA
26076479 TCCACTGCATCTTCAG
1 TCCACTGCATCTTCAG
26076495 CGATATGGGA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (50 bp):
TCCACTGCATCTTCAGGGAGATAAAATTCGCCATTATAACTTTGATCCGA
Found at i:26081162 original size:31 final size:31
Alignment explanation
Indices: 26081126--26081187 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26081116 TTGGCACCTC
26081126 CTCTGAATTTTGAATGATCAAACCCACGTCT
1 CTCTGAATTTTGAATGATCAAACCCACGTCT
26081157 CTCTGAATTTTGAATGATCAAACCCACGTCT
1 CTCTGAATTTTGAATGATCAAACCCACGTCT
26081188 ATCATTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (31 bp):
CTCTGAATTTTGAATGATCAAACCCACGTCT
Found at i:26085952 original size:23 final size:23
Alignment explanation
Indices: 26085925--26085969 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
26085915 TAATGAGTAC
*
26085925 AATAAAAAGTGATGAAATAAAAT
1 AATAAAAAATGATGAAATAAAAT
26085948 AATAAAAAATGATGAAATAAAA
1 AATAAAAAATGATGAAATAAAA
26085970 AAATTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (23 bp):
AATAAAAAATGATGAAATAAAAT
Found at i:26088275 original size:22 final size:22
Alignment explanation
Indices: 26088242--26088302 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
26088232 GCCCGGCCCG
* *
26088242 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
26088265 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
* *
26088287 TTGTTATTAAAATTAA
1 TTTTTAATAAAATTAA
26088303 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:26088315 original size:16 final size:16
Alignment explanation
Indices: 26088278--26088317 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26088268 TTAATAAAAT
* *
26088278 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
26088294 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
26088310 TAAAATTA
1 TAAAATTA
26088318 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:26088392 original size:51 final size:51
Alignment explanation
Indices: 26088333--26088450 Score: 211
Period size: 51 Copynumber: 2.3 Consensus size: 51
26088323 TTATTAATTG
26088333 TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTA
1 TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTA
26088384 TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTA
1 TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTA
* *
26088435 TCAAAT-TATTAATTGT
1 TTAATTGTATTAATTGT
26088451 ATTAATTGTA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
50 10 0.15
51 55 0.85
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.47
Consensus pattern (51 bp):
TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTA
Found at i:26088453 original size:9 final size:9
Alignment explanation
Indices: 26088441--26088468 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26088431 TTTATCAAAT
26088441 TATTAATTG
1 TATTAATTG
26088450 TATTAATTG
1 TATTAATTG
26088459 TATTAATTG
1 TATTAATTG
26088468 T
1 T
26088469 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:26089638 original size:12 final size:12
Alignment explanation
Indices: 26089621--26089645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26089611 AGATAACCAG
26089621 TATTTTGTTAAA
1 TATTTTGTTAAA
26089633 TATTTTGTTAAA
1 TATTTTGTTAAA
26089645 T
1 T
26089646 TCATGTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TATTTTGTTAAA
Found at i:26089927 original size:19 final size:19
Alignment explanation
Indices: 26089891--26089929 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26089881 TATTATTAAT
**
26089891 ATATTTATAATTGTAATAA
1 ATATTTATAATTAAAATAA
*
26089910 ATATTTATCATTAAAATAA
1 ATATTTATAATTAAAATAA
26089929 A
1 A
26089930 ACTGAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:26090230 original size:18 final size:20
Alignment explanation
Indices: 26090183--26090230 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 20
26090173 CTCCAACTTA
26090183 ATTTAAATT-TAATTGAATT
1 ATTTAAATTATAATTGAATT
*
26090202 ACTTAAA--ATAATT-AATT
1 ATTTAAATTATAATTGAATT
26090219 -TTTAAATTATAA
1 ATTTAAATTATAA
26090231 ACAAATATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
16 5 0.21
17 4 0.17
18 9 0.38
19 6 0.25
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTAAATTATAATTGAATT
Found at i:26090518 original size:28 final size:28
Alignment explanation
Indices: 26090437--26090548 Score: 86
Period size: 28 Copynumber: 4.0 Consensus size: 28
26090427 AATCATGAAT
* * *
26090437 CCTAAAC-CGTAAATCCAAAACCTAAAAC
1 CCTAAACTC-TAAATCTAAAATCTTAAAC
* * * *
26090465 CC-AAACCCTAAATCTTAAACCATAAAC
1 CCTAAACTCTAAATCTAAAATCTTAAAC
** *
26090492 TTTAAA-TCTAGAATCTCAAATCTTAAAC
1 CCTAAACTCTA-AATCTAAAATCTTAAAC
*
26090520 CCTAAACTCTAAATCTAAAATCTCAAAC
1 CCTAAACTCTAAATCTAAAATCTTAAAC
26090548 C
1 C
26090549 TTGAACCCAA
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
27 22 0.33
28 40 0.61
29 4 0.06
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (28 bp):
CCTAAACTCTAAATCTAAAATCTTAAAC
Done.