Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 93 of 199
Found at i:26090520 original size:35 final size:35
Alignment explanation
Indices: 26090474--26090563 Score: 119
Period size: 35 Copynumber: 2.6 Consensus size: 35
26090464 CCCAAACCCT
*
26090474 AAATCTTAAACCATAAACTTTAAATCTAGAATCTC
1 AAATCTTAAACCATAAACTTTAAATCTAAAATCTC
* *
26090509 AAATCTTAAACCCTAAACTCTAAATCTAAAATCTC
1 AAATCTTAAACCATAAACTTTAAATCTAAAATCTC
* *
26090544 AAACCTTGAACCCA-AAACTT
1 AAATCTT-AAACCATAAACTT
26090564 AGAAGCCCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 43 0.91
36 4 0.09
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (35 bp):
AAATCTTAAACCATAAACTTTAAATCTAAAATCTC
Found at i:26090631 original size:89 final size:89
Alignment explanation
Indices: 26090520--26090695 Score: 248
Period size: 89 Copynumber: 2.0 Consensus size: 89
26090510 AATCTTAAAC
*
26090520 CCTAAACTCTAAATCTAAAATCTCAAACCTTGAACCCAAAACTTAGAAGCCCAAACCCTAAACTC
1 CCTAAACTCTAAATCTAAAATCTCAAACCTTGAACCCAAAA-TCAGAAGCCCAAACCCTAAACTC
*
26090585 -AACCCATAACCATAAACCTAAAAT
65 AAACCCATAACCATAAACATAAAAT
* * * * *
26090609 CCTAAAC-CATAAATTTAGAATCTCAAACCTTGAACCCTAAATCATAAGCCCAAACCTTAAACTC
1 CCTAAACTC-TAAATCTAAAATCTCAAACCTTGAACCCAAAATCAGAAGCCCAAACCCTAAACTC
*
26090673 AAACCCATAACCTTAAACATAAA
65 AAACCCATAACCATAAACATAAA
26090696 CCCTAAATCC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 21 0.27
89 56 0.73
ACGTcount: A:0.46, C:0.30, G:0.03, T:0.20
Consensus pattern (89 bp):
CCTAAACTCTAAATCTAAAATCTCAAACCTTGAACCCAAAATCAGAAGCCCAAACCCTAAACTCA
AACCCATAACCATAAACATAAAAT
Found at i:26090696 original size:20 final size:19
Alignment explanation
Indices: 26090641--26090698 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
26090631 TCAAACCTTG
* *
26090641 AACCCTAAATCATAAGCCCA
1 AACCTTAAA-CATAAACCCA
26090661 AACCTTAAAC-TCAAACCCA
1 AACCTTAAACAT-AAACCCA
26090680 TAACCTTAAACATAAACCC
1 -AACCTTAAACATAAACCC
26090699 TAAATCCCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 1 0.03
19 7 0.21
20 24 0.73
21 1 0.03
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.17
Consensus pattern (19 bp):
AACCTTAAACATAAACCCA
Found at i:26090770 original size:14 final size:14
Alignment explanation
Indices: 26090728--26090778 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
26090718 TCGTAAGCCG
*
26090728 AACCTTTAAATCTTA
1 AACC-TTAAATATTA
*
26090743 AACC-CAAATATTA
1 AACCTTAAATATTA
*
26090756 AACCTTAAATTTTA
1 AACCTTAAATATTA
*
26090770 AACCCTAAA
1 AACCTTAAA
26090779 CCTTAAGATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 11 0.37
14 15 0.50
15 4 0.13
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
AACCTTAAATATTA
Found at i:26090784 original size:14 final size:14
Alignment explanation
Indices: 26090734--26090784 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
26090724 GCCGAACCTT
26090734 TAAATCTTAAACCC
1 TAAATCTTAAACCC
* *
26090748 -AAATATTAAACCT
1 TAAATCTTAAACCC
*
26090761 TAAATTTTAAACCC
1 TAAATCTTAAACCC
*
26090775 TAAACCTTAA
1 TAAATCTTAA
26090785 GATTTGAGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAATCTTAAACCC
Found at i:26090798 original size:14 final size:14
Alignment explanation
Indices: 26090781--26090829 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
26090771 ACCCTAAACC
*
26090781 TTAAGATTTGAGGT
1 TTAAGGTTTGAGGT
* *
26090795 TTAAGGTTTAAGGG
1 TTAAGGTTTGAGGT
*
26090809 TTAGGGTTTGA-GT
1 TTAAGGTTTGAGGT
26090822 TTAAGGTT
1 TTAAGGTT
26090830 CAAGATTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
13 8 0.29
14 20 0.71
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (14 bp):
TTAAGGTTTGAGGT
Found at i:26090842 original size:27 final size:28
Alignment explanation
Indices: 26090787--26090843 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
26090777 AACCTTAAGA
* *
26090787 TTTGAGGTTTAAGGTTTAAGGGTTAGGG
1 TTTGAGGTTTAAGGTTCAAGAGTTAGGG
* *
26090815 TTTGA-GTTTAAGGTTCAAGATTTTGGG
1 TTTGAGGTTTAAGGTTCAAGAGTTAGGG
26090842 TT
1 TT
26090844 CAGGGTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (28 bp):
TTTGAGGTTTAAGGTTCAAGAGTTAGGG
Found at i:26091671 original size:17 final size:17
Alignment explanation
Indices: 26091649--26091682 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26091639 CCAAAAAATA
*
26091649 TTGAAAATCATTTTATT
1 TTGAAAATCATGTTATT
*
26091666 TTGAAATTCATGTTATT
1 TTGAAAATCATGTTATT
26091683 ATATGTGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (17 bp):
TTGAAAATCATGTTATT
Found at i:26091852 original size:29 final size:29
Alignment explanation
Indices: 26091810--26091868 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
26091800 GTCAGCTTTC
26091810 AGCTAAAGAGAACTCAAGGGATGATTTTA
1 AGCTAAAGAGAACTCAAGGGATGATTTTA
26091839 AGCTAAAGAGAACTCAAGGGATGATTTTA
1 AGCTAAAGAGAACTCAAGGGATGATTTTA
26091868 A
1 A
26091869 TCTATAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCTAAAGAGAACTCAAGGGATGATTTTA
Found at i:26092954 original size:6 final size:6
Alignment explanation
Indices: 26092945--26092981 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
26092935 AACGAAAACT
* *
26092945 AATAAA AATAAA AATAAA ACTAAA ACTAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
26092982 TAATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:26107328 original size:4 final size:4
Alignment explanation
Indices: 26107319--26107351 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
26107309 ATGTTCAAAA
26107319 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT T
26107352 CATTCATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:26107356 original size:4 final size:4
Alignment explanation
Indices: 26107349--26107379 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
26107339 TAATTAATTA
26107349 ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATT
1 ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATT
26107380 AATGCAACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTC
Found at i:26108625 original size:13 final size:15
Alignment explanation
Indices: 26108599--26108632 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26108589 AGAATATCAA
26108599 ATAAATGAACAAAAT
1 ATAAATGAACAAAAT
* *
26108614 ATAAATGAAAAAAAC
1 ATAAATGAACAAAAT
26108629 ATAA
1 ATAA
26108633 GTCAATAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (15 bp):
ATAAATGAACAAAAT
Found at i:26108838 original size:18 final size:18
Alignment explanation
Indices: 26108812--26108855 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
26108802 AACATAATAT
* *
26108812 ATATACATATATAGATAA
1 ATATTCATATATAGAAAA
26108830 ATATTCATATATAGAAAA
1 ATATTCATATATAGAAAA
26108848 ATATTCAT
1 ATATTCAT
26108856 TAAAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (18 bp):
ATATTCATATATAGAAAA
Found at i:26110460 original size:44 final size:44
Alignment explanation
Indices: 26110408--26111555 Score: 388
Period size: 44 Copynumber: 26.4 Consensus size: 44
26110398 AATTTGCTCT
* *
26110408 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCAGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * *
26110452 CTGCAACTTTAGGGAGATAGGATC-ATCGTCTTTAATCTGCTCTA
1 CTGCAACTTCAGAGAGATAAGATCTATGGT-TTTAATCTGCTCCA
* * * *
26110496 CTGCAACTTCA-AGAAGATAAGATTCGCCAT--CTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAG-AGATAAGA-T--CTATGGTTTTAATCTGCTC-CA
* * * *
26110541 CTGTAACTTCAG-GAGGATAAGA-C-CTGCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTAATCTGCTCCA
* * *** *
26110585 CTGCAACTTCAGGGAGATAAGA-CTA--GATGCGATCTGC-CCT
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * *
26110625 CTGCAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * * *
26110669 CTACAACTTTAGGGAGATAGGAT-TATCGGTTTTAACCTGCTCTA
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGTTTTAATCTGCTCCA
* * * * *
26110713 CTGCAACTTCAGAGAGATAAGGT-T-TGCCATCTTCAGTCTGCCCCA
1 CTGCAACTTCAGAGAGATAAGATCTATG--GT-TTTAATCTGCTCCA
* * * *
26110758 CTACAACTTCAG-GAGGATAAGA-CT-TGCTTACTTAGTCTGCTTCA
1 CTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTAATCTGCTCCA
* * * * *
26110802 CTGCAACTTCAG-GAAGATAAGA-CTA--GATGTGATCTGGTCTA
1 CTGCAACTTCAGAG-AGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * *
26110843 -TGAAACTTCAGAGAGATAGGAT-TCAAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCT-ATGGTTTTAATCTGCTCCA
* * * *
26110886 TTGCAACTTTAGAGAGATAAGAT-TATCGGTTTTAACCTGCTCTA
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGTTTTAATCTGCTCCA
* * * * * *
26110930 CTGCAACTTCAGGGAGATAAGGT-T-TGCCATCTTCAGTCTAC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTATG--GT-TTTAATCTGCTC-CA
* * *
26110975 CTGCAACTTCAG-GAGGATAAGA-C-CTGCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTAATCTGCTCCA
* * * * * *
26111019 CTGCAACTTCAGAAAGATAAGA-CTA--GATATGATCTGGT-CT
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * * *
26111059 CTACAACTTCAGAGAGATAGGATCCAAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * * ** *
26111103 TTACAACTTTAGGGAGATAGGAT-TATCGACTTTAACCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGTTTTAATCTGCTCCA
* * * * * * *
26111147 CTGTAACTTCAGGGAGATAAGGT-T-TGCCATCTTCAGTTTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTATG--GT-TTTAATCTGCTC-CA
* *
26111192 CTGCAACTTCA-AGAGGATAAGATC--TGCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTAATCTGCTCCA
* * * * *
26111236 CTGCAACTTCAGGGAGATAAGA-CTA--GATGTGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * *
26111276 CTGCAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * * * *
26111320 CTACAACTTTAGGGAGATAGGAT-TATCGGCTTTAACCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTAT-GGTTTTAATCTGCTCCA
* * * * ** * * *
26111364 CTGCAACTTCAGGGAGATAAGGTTTGTCATCTTCAGTCTGCCCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGT-TTTAATCTGCTCCA
* *
26111409 CTGCAACTTCA-AGAGGATAAGATC--TGCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTATGGTT--TTAATCTGCTCCA
* * *** *
26111453 CTGCAACTTCAGGGAGATAAGA-CTA--GATGCGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * * *
26111493 CTGCAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
* * *
26111537 CTACAACTTTAGGGAGATA
1 CTGCAACTTCAGAGAGATA
26111556 GGATTATCGG
Statistics
Matches: 809, Mismatches: 212, Indels: 166
0.68 0.18 0.14
Matches are distributed among these distances:
40 106 0.13
41 42 0.05
42 8 0.01
43 60 0.07
44 438 0.54
45 152 0.19
47 1 0.00
48 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCTGCTCCA
Found at i:26111566 original size:217 final size:217
Alignment explanation
Indices: 26110364--26111566 Score: 1884
Period size: 217 Copynumber: 5.5 Consensus size: 217
26110354 TTCGATCCAT
** * *
26110364 TCCACTGCAACACCAGGGAGATAAGACTAGATGCAATTTGCTCTCTGCAACTTCAGAGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
*** * * * * * *
26110429 ATCTGTGGTTTTAATCAGCTCCACTGCAACTTTAGGGAGATAGGATCATCGTCTTTAATCTGCTC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
* * * * *
26110494 TACTGCAACTTCAAGAAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGAT
131 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
26110559 AAGACCTGCTTACTTAGTCTGC
196 AAGACCTGCTTACTTAGTCTGC
*
26110581 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCCCTCTGCAACTTCAGAGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
*
26110646 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGTTTTAACCTGCTC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
* * *
26110711 TACTGCAACTTCAGAGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGGAGGAT
131 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
*
26110776 AAGACTTGCTTACTTAGTCTGC
196 AAGACCTGCTTACTTAGTCTGC
* * * * * * *
26110798 TTCACTGCAACTTCAGGAAGATAAGACTAGATGTGATCTGGTCTATGAAACTTCAGAGAGATAGG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
* * * * * *
26110863 ATTCAAGATTTTAATCCGCTCCATTGCAACTTTAGAGAGATAAGATTATCGGTTTTAACCTGCTC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
*
26110928 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGAT
131 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
26110993 AAGACCTGCTTACTTAGTCTGC
196 AAGACCTGCTTACTTAGTCTGC
** ** * * *
26111015 TCCACTGCAACTTCAGAAAGATAAGACTAGATATGATCTGGTCTCTACAACTTCAGAGAGATAGG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
* *
26111080 ATCCAAGATTTTAATCCGCTCCATTACAACTTTAGGGAGATAGGATTATCGACTTTAACCTGCTC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
* * * *
26111145 CACTGTAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTTTGCCTCACTGCAACTTCAAGAGGAT
131 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
*
26111210 AAGATCTGCTTACTTAGTCTGC
196 AAGACCTGCTTACTTAGTCTGC
*
26111232 TCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTCAGAGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
26111297 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
* * * *
26111362 CACTGCAACTTCAGGGAGATAAGGTTTGTCATCTTCAGTCTGCCCCACTGCAACTTCAAGAGGAT
131 TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
*
26111427 AAGATCTGCTTACTTAGTCTGC
196 AAGACCTGCTTACTTAGTCTGC
26111449 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
26111514 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGC
66 ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGC
26111567 CACCGATCCG
Statistics
Matches: 913, Mismatches: 73, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
217 913 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (217 bp):
TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
ATCCAAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTTAACCTGCTC
TACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
AAGACCTGCTTACTTAGTCTGC
Found at i:26115210 original size:36 final size:36
Alignment explanation
Indices: 26115163--26115244 Score: 155
Period size: 36 Copynumber: 2.3 Consensus size: 36
26115153 TTCAGAATAT
*
26115163 TTGACCTCCTGTAGAAACCCAGCATCAAACTTTTTC
1 TTGACCTCCTGTAAAAACCCAGCATCAAACTTTTTC
26115199 TTGACCTCCTGTAAAAACCCAGCATCAAACTTTTTC
1 TTGACCTCCTGTAAAAACCCAGCATCAAACTTTTTC
26115235 TTGACCTCCT
1 TTGACCTCCT
26115245 CTTTTATTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (36 bp):
TTGACCTCCTGTAAAAACCCAGCATCAAACTTTTTC
Found at i:26122940 original size:13 final size:15
Alignment explanation
Indices: 26122914--26122947 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26122904 AGAATATCAA
26122914 ATAAATGAACAAAAT
1 ATAAATGAACAAAAT
* *
26122929 ATAAATGAAAAAAAC
1 ATAAATGAACAAAAT
26122944 ATAA
1 ATAA
26122948 GTCAATAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (15 bp):
ATAAATGAACAAAAT
Found at i:26124920 original size:4 final size:4
Alignment explanation
Indices: 26124913--26124967 Score: 101
Period size: 4 Copynumber: 13.8 Consensus size: 4
26124903 AAATTAATTA
*
26124913 ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATAC
1 ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC
26124961 ATTC ATT
1 ATTC ATT
26124968 AATGCAACAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTC
Found at i:26126213 original size:13 final size:15
Alignment explanation
Indices: 26126187--26126220 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26126177 AGAATATCAA
26126187 ATAAATGAACAAAAT
1 ATAAATGAACAAAAT
* *
26126202 ATAAATGAAAAAAAC
1 ATAAATGAACAAAAT
26126217 ATAA
1 ATAA
26126221 GTCAATAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (15 bp):
ATAAATGAACAAAAT
Found at i:26126562 original size:23 final size:23
Alignment explanation
Indices: 26126505--26126554 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
26126495 TTAAAAAAAC
26126505 AAAATATATATACATATATAGATAA
1 AAAATA-AT-TACATATATAGATAA
*
26126530 AAAATAATTACATATATATATAA
1 AAAATAATTACATATATAGATAA
26126553 AA
1 AA
26126555 TTACATTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 16 0.67
24 2 0.08
25 6 0.25
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (23 bp):
AAAATAATTACATATATAGATAA
Found at i:26129527 original size:25 final size:24
Alignment explanation
Indices: 26129487--26129590 Score: 86
Period size: 25 Copynumber: 4.2 Consensus size: 24
26129477 CCCGTTATAG
*
26129487 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTCTG-GAGCTTCCTGA-TAAT
*
26129513 GGCTCTCTGGAGCTTCCCGAT-AT
1 GGCTCTCTGGAGCTTCCTGATAAT
* * *
26129536 GGCTCGCTTGAGCTTCTTGATATAT
1 GGCTCTCTGGAGCTTCCTGATA-AT
* * *
26129561 GGCTATCCGGAGCTT-CTCGTTAAT
1 GGCTCTCTGGAGCTTCCT-GATAAT
26129585 GGCTCT
1 GGCTCT
26129591 TCAGAGCTAC
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
23 19 0.31
24 9 0.15
25 26 0.42
26 8 0.13
ACGTcount: A:0.14, C:0.24, G:0.25, T:0.37
Consensus pattern (24 bp):
GGCTCTCTGGAGCTTCCTGATAAT
Found at i:26129531 original size:51 final size:50
Alignment explanation
Indices: 26129471--26129591 Score: 124
Period size: 48 Copynumber: 2.5 Consensus size: 50
26129461 CAGCTCTTAT
* * * *
26129471 GAGCGTCCCGTTATAGGGCTCTTTGTGAGCTTCCTGAT-TAATGGCTCTCTG
1 GAGCTTCCCGTTATATGGCTCTTT-TGAGCTTCCTGATAT-ATGGCTATCCG
** *
26129522 GAGCTTCCCG--ATATGGCTCGCTTGAGCTTCTTGATATATGGCTATCCG
1 GAGCTTCCCGTTATATGGCTCTTTTGAGCTTCCTGATATATGGCTATCCG
*
26129570 GAGCTTCTCGTTA-ATGGCTCTT
1 GAGCTTCCCGTTATATGGCTCTT
26129592 CAGAGCTACC
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
48 30 0.53
49 17 0.30
50 1 0.02
51 9 0.16
ACGTcount: A:0.15, C:0.24, G:0.26, T:0.36
Consensus pattern (50 bp):
GAGCTTCCCGTTATATGGCTCTTTTGAGCTTCCTGATATATGGCTATCCG
Found at i:26129557 original size:23 final size:23
Alignment explanation
Indices: 26129496--26129558 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
26129486 GGGCTCTTTG
*
26129496 TGAGCTTCCTGATTAATGGCTCTCT
1 TGAGCTTCCTGA-T-ATGGCTCGCT
* *
26129521 GGAGCTTCCCGATATGGCTCGCT
1 TGAGCTTCCTGATATGGCTCGCT
*
26129544 TGAGCTTCTTGATAT
1 TGAGCTTCCTGATAT
26129559 ATGGCTATCC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 21 0.66
24 1 0.03
25 10 0.31
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.37
Consensus pattern (23 bp):
TGAGCTTCCTGATATGGCTCGCT
Found at i:26129637 original size:24 final size:24
Alignment explanation
Indices: 26129604--26129655 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
26129594 GAGCTACCCG
*
26129604 TTATTGGCTCGCATGAGCTTTCTAA
1 TTATTGGCTCGCATGAGCTTCCT-A
**
26129629 TTATT-GCTCTTATGAGCTTCCTA
1 TTATTGGCTCGCATGAGCTTCCTA
26129652 TTAT
1 TTAT
26129656 ACAGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (24 bp):
TTATTGGCTCGCATGAGCTTCCTA
Found at i:26134415 original size:34 final size:34
Alignment explanation
Indices: 26134372--26134439 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
26134362 TTTAATTACT
26134372 TAGAAAATATTTTCTAGAAAATTTTATAAAAAGC
1 TAGAAAATATTTTCTAGAAAATTTTATAAAAAGC
26134406 TAGAAAATATTTTCTAGAAAATTTTATAAAAAGC
1 TAGAAAATATTTTCTAGAAAATTTTATAAAAAGC
26134440 AATTCACAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (34 bp):
TAGAAAATATTTTCTAGAAAATTTTATAAAAAGC
Found at i:26138644 original size:36 final size:36
Alignment explanation
Indices: 26138615--26138684 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
26138605 AATTATAATT
*
26138615 GTTCGCCATATTAATACAAGTCACCAAATTAACACA
1 GTTCGCCATAATAATACAAGTCACCAAATTAACACA
* * *
26138651 GTTCGCCATAATAATATAATTCACCAAGTTAACA
1 GTTCGCCATAATAATACAAGTCACCAAATTAACA
26138685 TGGTTCACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (36 bp):
GTTCGCCATAATAATACAAGTCACCAAATTAACACA
Found at i:26138702 original size:17 final size:18
Alignment explanation
Indices: 26138680--26138717 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26138670 TTCACCAAGT
* *
26138680 TAACATGGTTCAC-AATA
1 TAACATAGTACACAAATA
26138697 TAACATAGTACACAAATA
1 TAACATAGTACACAAATA
26138715 TAA
1 TAA
26138718 TTGACTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
TAACATAGTACACAAATA
Found at i:26138969 original size:29 final size:28
Alignment explanation
Indices: 26138936--26139036 Score: 105
Period size: 29 Copynumber: 3.5 Consensus size: 28
26138926 ATATACGAAT
*
26138936 ATATATAATATATACAACAAAGCCCATGC
1 ATATATAATATATATAACAAAGCCCAT-C
26138965 ATATATAATATATATAACAAAGCCACA-C
1 ATATATAATATATATAACAAAGCC-CATC
* * *
26138993 CTATATTATATATATAACAAAACCCCTATAC
1 ATATATAATATATATAAC-AAAGCCC-AT-C
*
26139024 ATATATATTATAT
1 ATATATAATATAT
26139037 GAAACAATAC
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
28 18 0.30
29 29 0.48
30 2 0.03
31 11 0.18
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (28 bp):
ATATATAATATATATAACAAAGCCCATC
Found at i:26140598 original size:16 final size:16
Alignment explanation
Indices: 26140577--26140623 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
26140567 TATTAATACC
*
26140577 ATTATTATTTTATTTA
1 ATTATTATTTTATCTA
*
26140593 ATTATT-TTATTAACTA
1 ATTATTATT-TTATCTA
26140609 ATTAATTATTTTATC
1 ATT-ATTATTTTATC
26140624 CTATTTCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.08
16 14 0.56
17 7 0.28
18 2 0.08
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTATTTTATCTA
Found at i:26147215 original size:23 final size:23
Alignment explanation
Indices: 26147188--26147307 Score: 159
Period size: 23 Copynumber: 5.2 Consensus size: 23
26147178 TGTTATTGAT
* **
26147188 CAGTGGTAGCTTCGGCTACGTTT
1 CAGTGGTAGCTTCGGCTACATAA
* *
26147211 TAGTGGTAGCTTCGGCTACGTAA
1 CAGTGGTAGCTTCGGCTACATAA
**
26147234 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACATAA
*
26147257 CAGAGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATAA
*
26147280 CAGTGGTAGCTTCGGCTACATAT
1 CAGTGGTAGCTTCGGCTACATAA
26147303 CAGTG
1 CAGTG
26147308 TTGCACTTAT
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 85 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATAA
Found at i:26147241 original size:46 final size:46
Alignment explanation
Indices: 26147188--26147305 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 46
26147178 TGTTATTGAT
* * * *
26147188 CAGTGGTAGCTTCGGCTACGTTTTAGTGGTAGCTTCGGCTACGTAA
1 CAGTGGTAGCTTCGGCTACATTTCAGAGGTAGCTTCGGCTACATAA
26147234 CAGTGGTAGCTTCGGCTACATTTCAGAGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGAGGTAGCTTCGGCTACATAA
*
26147280 CAGTGGTAGCTTCGGCTACATATCAG
1 CAGTGGTAGCTTCGGCTACATTTCAG
26147306 TGTTGCACTT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATTTCAGAGGTAGCTTCGGCTACATAA
Found at i:26153880 original size:2 final size:2
Alignment explanation
Indices: 26153873--26153905 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26153863 AAATAGCAAT
26153873 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
26153906 ATGTCGGGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26154745 original size:4 final size:4
Alignment explanation
Indices: 26154736--26154760 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26154726 AGGTGAAGTG
26154736 AGCC AGCC AGCC AGCC AGCC AGCC A
1 AGCC AGCC AGCC AGCC AGCC AGCC A
26154761 ACCAAGCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.28, C:0.48, G:0.24, T:0.00
Consensus pattern (4 bp):
AGCC
Found at i:26158947 original size:20 final size:19
Alignment explanation
Indices: 26158909--26158947 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26158899 CTCTCTTTTT
* *
26158909 TAAAATAGGATGGTTTTAC
1 TAAAAAAGGATGGTCTTAC
26158928 TAAAAAAGGATCGGTCTTAC
1 TAAAAAAGGAT-GGTCTTAC
26158948 ATATAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (19 bp):
TAAAAAAGGATGGTCTTAC
Found at i:26159053 original size:20 final size:21
Alignment explanation
Indices: 26159028--26159068 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26159018 TTACGTATAC
*
26159028 GTAAATATTTTTTTA-TAAAA
1 GTAAATATTTTATTATTAAAA
*
26159048 GTAAATCTTTTATTATTAAAA
1 GTAAATATTTTATTATTAAAA
26159069 TATTCCAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (21 bp):
GTAAATATTTTATTATTAAAA
Found at i:26184299 original size:36 final size:36
Alignment explanation
Indices: 26184252--26184324 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
26184242 AGGACGATAT
26184252 GAGCCAAATTAATGGTTAATGCTAACAGTTTAACAC
1 GAGCCAAATTAATGGTTAATGCTAACAGTTTAACAC
26184288 GAGCCAAATTAATGGTTAATGCTAACAGTTTAACAC
1 GAGCCAAATTAATGGTTAATGCTAACAGTTTAACAC
26184324 G
1 G
26184325 TTCATCATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (36 bp):
GAGCCAAATTAATGGTTAATGCTAACAGTTTAACAC
Found at i:26188318 original size:18 final size:19
Alignment explanation
Indices: 26188281--26188318 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
26188271 CGTTTGATTT
*
26188281 AATTTTGTAGGTCCATTGG
1 AATTTTGTACGTCCATTGG
*
26188300 AATTTTG-ACGTCGATTGG
1 AATTTTGTACGTCCATTGG
26188318 A
1 A
26188319 TCAACTCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (19 bp):
AATTTTGTACGTCCATTGG
Found at i:26189462 original size:20 final size:21
Alignment explanation
Indices: 26189418--26189463 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
26189408 CCCTTAAATT
* *
26189418 ATTTTATTTATAATATTATTC
1 ATTTTACTTATAAAATTATTC
26189439 -TTTTACTTATAAAATTA-TC
1 ATTTTACTTATAAAATTATTC
26189458 ATTTTA
1 ATTTTA
26189464 ATAAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTACTTATAAAATTATTC
Found at i:26189571 original size:11 final size:10
Alignment explanation
Indices: 26189529--26189567 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
26189519 ATATTATTTT
26189529 AATTTTTATG
1 AATTTTTATG
* *
26189539 TATTTTTATA
1 AATTTTTATG
*
26189549 AAATTTTATG
1 AATTTTTATG
26189559 AATTTTTAT
1 AATTTTTAT
26189568 TGAAAAATAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (10 bp):
AATTTTTATG
Found at i:26193569 original size:16 final size:16
Alignment explanation
Indices: 26193548--26193584 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
26193538 GAACTCTTTA
*
26193548 ATTAACTTGCTGTTAT
1 ATTAACTTACTGTTAT
26193564 ATTAACTTACTGTTAT
1 ATTAACTTACTGTTAT
26193580 ATTAA
1 ATTAA
26193585 TTTGTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (16 bp):
ATTAACTTACTGTTAT
Found at i:26193592 original size:13 final size:15
Alignment explanation
Indices: 26193548--26193593 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
26193538 GAACTCTTTA
*
26193548 ATTAACTTGCTGTTAT
1 ATTAACTT-ATGTTAT
26193564 ATTAACTTACTGTTAT
1 ATTAACTTA-TGTTAT
26193580 ATTAA-TT-TGTTAT
1 ATTAACTTATGTTAT
26193593 A
1 A
26193594 AATATATAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.25
15 2 0.07
16 19 0.68
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (15 bp):
ATTAACTTATGTTAT
Found at i:26197408 original size:16 final size:16
Alignment explanation
Indices: 26197378--26197411 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26197368 ATTTAGCCTC
**
26197378 TCATTTCCTTTTCATT
1 TCATTTCCTCCTCATT
26197394 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
26197410 TC
1 TC
26197412 CTCTCTGCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:26200579 original size:20 final size:20
Alignment explanation
Indices: 26200554--26200591 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
26200544 AAACACCAGG
26200554 AAAGTAAATCATTTTCCAAA
1 AAAGTAAATCATTTTCCAAA
26200574 AAAGTAAATCATTTTCCA
1 AAAGTAAATCATTTTCCA
26200592 GAAATCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAGTAAATCATTTTCCAAA
Found at i:26200598 original size:14 final size:14
Alignment explanation
Indices: 26200579--26200657 Score: 68
Period size: 14 Copynumber: 5.3 Consensus size: 14
26200569 CCAAAAAAGT
26200579 AAATCATTTTCCAG
1 AAATCATTTTCCAG
* *
26200593 AAATCATTTTTCGG
1 AAATCATTTTCCAG
* *
26200607 AAAACATTTTACTGACAA
1 AAATCATTTT-C---CAG
*
26200625 ACAAACATTTTCCAG
1 A-AATCATTTTCCAG
26200640 AAATCATTTTCCAG
1 AAATCATTTTCCAG
26200654 AAAT
1 AAAT
26200658 GTAAATTTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
14 37 0.71
15 3 0.06
18 3 0.06
19 9 0.17
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.33
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:26207285 original size:32 final size:32
Alignment explanation
Indices: 26207247--26207308 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
26207237 CCTGTTTTTT
**
26207247 AAATAAATACCAAAAATTTATTTTAAAAATTA
1 AAATAAATACCAAAAAAGTATTTTAAAAATTA
**
26207279 AAATAAATATTAAAAAAGTATTTTAAAAAT
1 AAATAAATACCAAAAAAGTATTTTAAAAAT
26207309 ATTTTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (32 bp):
AAATAAATACCAAAAAAGTATTTTAAAAATTA
Found at i:26207323 original size:17 final size:17
Alignment explanation
Indices: 26207301--26207406 Score: 63
Period size: 17 Copynumber: 6.7 Consensus size: 17
26207291 AAAAAGTATT
26207301 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
26207318 TTAAAAA-A-ATT-AAA
1 TTAAAAATATTTTAAAA
*
26207332 --AAAAGTATTTT--AA
1 TTAAAAATATTTTAAAA
26207345 --AAAAA-A-TTTAAAA
1 TTAAAAATATTTTAAAA
26207358 TTAAAAAAAGTATTTTAAAA
1 TT--AAAAA-TATTTTAAAA
* *
26207378 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTTAAAA
*
26207395 ATAAAAATATTT
1 TTAAAAATATTT
26207407 ATTATTCGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
11 3 0.04
12 5 0.07
13 9 0.13
14 5 0.07
15 2 0.03
16 1 0.01
17 30 0.43
18 5 0.07
19 1 0.01
20 9 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:26207339 original size:40 final size:41
Alignment explanation
Indices: 26207265--26207366 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 41
26207255 ACCAAAAATT
*
26207265 TATTTTAAAAATTAAAATAAATATTAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAA-AAATATAAAAAAAGTATTTTAAAAA
26207308 TATTTTAAAATTAAAAAAAT-TAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATATAAAAAAAGTATTTTAAAAA
* *
26207348 AAATTTAAAATTAAAAAAA
1 TATTTTAAAATTAAAAAAA
26207367 GTATTTTAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
40 36 0.64
41 4 0.07
42 10 0.18
43 6 0.11
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAATATAAAAAAAGTATTTTAAAAA
Found at i:26207395 original size:31 final size:29
Alignment explanation
Indices: 26207303--26207395 Score: 127
Period size: 31 Copynumber: 3.2 Consensus size: 29
26207293 AAAGTATTTT
26207303 AAAAA-TATTTTAAAATTAAAAAAATTAA
1 AAAAAGTATTTTAAAATTAAAAAAATTAA
*
26207331 AAAAAGTATTTTAAAA-AAAATTTAAAATTAA
1 AAAAAGTATTTTAAAATTAAA---AAAATTAA
*
26207362 AAAAAGTATTTTAAAATTAAAAAAATTTA
1 AAAAAGTATTTTAAAATTAAAAAAATTAA
26207391 AAAAA
1 AAAAA
26207396 TAAAAATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
28 8 0.14
29 22 0.39
31 24 0.42
32 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (29 bp):
AAAAAGTATTTTAAAATTAAAAAAATTAA
Found at i:26211396 original size:41 final size:41
Alignment explanation
Indices: 26211351--26211456 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
26211341 ACTGGCAATT
* *
26211351 AGCCTGCTAGACGTAAAGTCTGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
26211392 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
26211433 AGCCTGCTAGACGTAATGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
26211457 TTATCTCATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:26216894 original size:59 final size:61
Alignment explanation
Indices: 26216821--26216960 Score: 185
Period size: 59 Copynumber: 2.3 Consensus size: 61
26216811 TTGTTATTAA
* * *
26216821 ATTTTAATAGAATTATTATTAAAAATAATTTAAT-AAT-AAATAATAAATAATTTAATCAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAATAAATGAAAAAATAAATAATTTAATAAT
* * *
26216880 ATTTTAATATAATTATTATTAGATATAATTTAATAAAAATGAAAAAATATATAATTTAATAAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAAT--AAATGAAAAAATAAATAATTTAATAAT
26216943 ATTTTTAATATAATTATT
1 A-TTTTAATATAATTATT
26216961 TTTATAGTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
59 31 0.44
62 3 0.04
63 20 0.29
64 16 0.23
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (61 bp):
ATTTTAATATAATTATTATTAAAAATAATTTAATAAATGAAAAAATAAATAATTTAATAAT
Found at i:26216981 original size:10 final size:10
Alignment explanation
Indices: 26216962--26217047 Score: 51
Period size: 10 Copynumber: 9.0 Consensus size: 10
26216952 ATAATTATTT
*
26216962 TTATAGTAAA
1 TTATATTAAA
26216972 TTATATTAAA
1 TTATATTAAA
*
26216982 ATAT-TTAAA
1 TTATATTAAA
26216991 --ATATT---
1 TTATATTAAA
26216996 TTATATTAAA
1 TTATATTAAA
26217006 TTATATTTTGAAA
1 TTATA--TT-AAA
* **
26217019 TTA-AATATT
1 TTATATTAAA
26217028 TTATATTAAA
1 TTATATTAAA
26217038 TTATATTAAA
1 TTATATTAAA
26217048 ATATTTCAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
7 7 0.12
8 2 0.03
9 9 0.16
10 31 0.53
12 3 0.05
13 6 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (10 bp):
TTATATTAAA
Found at i:26216985 original size:32 final size:31
Alignment explanation
Indices: 26216949--26217051 Score: 102
Period size: 32 Copynumber: 3.2 Consensus size: 31
26216939 TAATATTTTT
*
26216949 AATATAATTATTTTTATAGTAAATTATATTAA
1 AATATAA-TATTTTTATATTAAATTATATTAA
* *
26216981 AATATTTAAAATATTTTATATTAAATTATATTTTGA
1 AATA--TAATAT-TTTTATATTAAATTATA--TTAA
26217017 AAT-TAA-ATATTTTATATTAAATTATATTAA
1 AATATAATAT-TTTTATATTAAATTATATTAA
26217047 AATAT
1 AATAT
26217052 TTCAAATATT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
30 6 0.10
31 1 0.02
32 24 0.39
33 5 0.08
34 19 0.31
36 6 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
AATATAATATTTTTATATTAAATTATATTAA
Found at i:26216999 original size:34 final size:33
Alignment explanation
Indices: 26216960--26217065 Score: 144
Period size: 34 Copynumber: 3.2 Consensus size: 33
26216950 ATATAATTAT
*
26216960 TTTTATAGTAAATTATATTAAAATATTTAAAATA
1 TTTTATATTAAATTATATTAAAATATTT-AAATA
**
26216994 TTTTATATTAAATTATATTTTGAA-A-TTAAATA
1 TTTTATATTAAATTATA-TTAAAATATTTAAATA
26217026 TTTTATATTAAATTATATTAAAATATTTCAAATA
1 TTTTATATTAAATTATATTAAAATATTT-AAATA
26217060 TTTTAT
1 TTTTAT
26217066 TTTTATATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
31 4 0.06
32 23 0.37
33 4 0.06
34 28 0.44
35 4 0.06
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (33 bp):
TTTTATATTAAATTATATTAAAATATTTAAATA
Found at i:26237262 original size:28 final size:26
Alignment explanation
Indices: 26237225--26237285 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 26
26237215 ACCAAAAATT
26237225 TATTTTAAAAATAAAAAATAAAAAAA
1 TATTTTAAAAATAAAAAATAAAAAAA
26237251 GTATTTTAAAAATAAAAAATAAAAAAA
1 -TATTTTAAAAATAAAAAATAAAAAAA
26237278 TATATTTA
1 TAT-TTTA
26237286 TTATATATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 3 0.09
27 30 0.91
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
TATTTTAAAAATAAAAAATAAAAAAA
Found at i:26237522 original size:16 final size:16
Alignment explanation
Indices: 26237501--26237533 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26237491 TTCGCTGTAT
26237501 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
26237517 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
26237533 T
1 T
26237534 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:26237590 original size:21 final size:21
Alignment explanation
Indices: 26237564--26237606 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
26237554 GGTTCGCTGT
*
26237564 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
26237585 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
26237606 A
1 A
26237607 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:26237606 original size:16 final size:16
Alignment explanation
Indices: 26237587--26237619 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26237577 TGTATTGGAT
*
26237587 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
26237603 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
26237619 T
1 T
26237620 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:26237664 original size:45 final size:44
Alignment explanation
Indices: 26237598--26237692 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
26237588 GGATTAGAGG
* *
26237598 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
26237643 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
26237687 TGTAAT
1 TGTAAT
26237693 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:26237875 original size:18 final size:17
Alignment explanation
Indices: 26237854--26237888 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26237844 TTATTATTTA
*
26237854 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26237872 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26237889 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26238001 original size:144 final size:147
Alignment explanation
Indices: 26237773--26238044 Score: 469
Period size: 144 Copynumber: 1.9 Consensus size: 147
26237763 ATGATTATTG
*
26237773 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTGAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTGAATCATAATTAA
*
26237838 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
26237903 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
* *
26237922 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATAATTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTGAATCATAATTAAAC
26237984 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
26238045 ATATTCTTAT
Statistics
Matches: 119, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
144 90 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTGAATCATAATTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:26238015 original size:16 final size:16
Alignment explanation
Indices: 26237975--26238032 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
26237965 AATTTAATCA
26237975 TAATTAAACATA-ATTAT
1 TAATTAAA-ATATATT-T
26237992 T-ATT-AAATATATTT
1 TAATTAAAATATATTT
26238006 TAATTAAAATATATAATT
1 TAATTAAAATATAT--TT
26238024 TAA-TAAAAT
1 TAATTAAAAT
26238033 TCTTAATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 5 0.14
15 8 0.22
16 11 0.31
17 7 0.19
18 5 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATTAAAATATATTT
Found at i:26238019 original size:18 final size:17
Alignment explanation
Indices: 26237998--26238032 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26237988 TTATTATTAA
*
26237998 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26238016 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26238033 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26238107 original size:144 final size:142
Alignment explanation
Indices: 26237785--26238174 Score: 375
Period size: 144 Copynumber: 2.8 Consensus size: 142
26237775 ATTGTTATTT
* *
26237785 AAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTGAATCATATTTAAACATAATTATTA
1 AAATTTTAATAAGATTA---A-TATCAAAAATAAATAATTTAATCATAATTAAACATAATTATTA
* *
26237850 TTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTT
62 TTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA--AGAAATTTGTTA
* ** ***
26237915 TGGTAAATTATTTTATTT
125 TGGTAAATTACTCAAACC
*
26237933 AAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATAATTAAACATAATTATTATTAA
1 AAATTTTAATAAGATTAATATCAAAAATAAATAATTTAATCATAATTAAACATAATTATTATTAA
*
26237998 ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATT-A-ATATTCT-TATAT-G-
66 ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAGAAATT-TGT-TATGGT
*
26238058 AATTTACTCAAACC
129 AAATTACTCAAACC
* *** *
26238072 ATAATTATTATTAA-A-T-ATGAT--ACTGT-AA-AA--T-AT-A-AAAT-AACATAATTATTAT
1 A-AATT-TTAATAAGATTAAT-ATCAAAAATAAATAATTTAATCATAATTAAACATAATTATTAT
* *
26238124 TAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
63 TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
26238175 TATTCTTATA
Statistics
Matches: 216, Mismatches: 20, Indels: 30
0.81 0.08 0.11
Matches are distributed among these distances:
129 61 0.28
130 4 0.02
131 1 0.00
132 2 0.01
133 1 0.00
135 2 0.01
136 2 0.01
137 2 0.01
138 2 0.01
139 11 0.05
140 11 0.05
141 10 0.05
144 89 0.41
145 1 0.00
148 17 0.08
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (142 bp):
AAATTTTAATAAGATTAATATCAAAAATAAATAATTTAATCATAATTAAACATAATTATTATTAA
ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAGAAATTTGTTATGGTAA
ATTACTCAAACC
Found at i:26238119 original size:129 final size:130
Alignment explanation
Indices: 26237981--26238214 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
26237971 ATCATAATTA
* *
26237981 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
26238046 TATTCTTATATGAATTTACTCAAACCATAAT-TATTATTAAATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATTAAATATGATACTGTAAAATATAAAAT
26238110 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
26238175 TATTCTTATATGAATTTACTCAAATCATAATATATGATTA
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATTA
26238215 TAACTAATAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (130 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATTAAATATGATACTGTAAAATATAAAAT
Found at i:26238148 original size:18 final size:17
Alignment explanation
Indices: 26238127--26238161 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26238117 TTATTATTAA
26238127 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
26238145 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
26238162 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:26238224 original size:17 final size:16
Alignment explanation
Indices: 26238202--26238248 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
26238192 ACTCAAATCA
26238202 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
26238219 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
26238233 TAAATATATGATTTAA
1 T-AATATATGATTTAA
26238249 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:26238249 original size:17 final size:17
Alignment explanation
Indices: 26238221--26238254 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26238211 ATTATAACTA
*
26238221 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
26238238 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
26238255 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:26241132 original size:18 final size:17
Alignment explanation
Indices: 26241111--26241145 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26241101 TTATTATTAA
*
26241111 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26241129 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26241146 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26241162 original size:16 final size:15
Alignment explanation
Indices: 26241137--26241166 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26241127 ATATATAATT
26241137 TAATAAAATTCTTAA
1 TAATAAAATTCTTAA
26241152 TAATCAAAATTCTTA
1 TAAT-AAAATTCTTA
26241167 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATAAAATTCTTAA
Found at i:26241265 original size:59 final size:59
Alignment explanation
Indices: 26240957--26241255 Score: 181
Period size: 59 Copynumber: 5.1 Consensus size: 59
26240947 AAATCATAAC
* *
26240957 ATATGATACTATAAAATATAATTTAACATAATTATTATTAAATATATTATAATTAAAAT
1 ATATGATACTATAAAATATAATTTAACAAAATTATTATTAAATATATTTTAATTAAAAT
* * * * * * * * ** * *
26241016 -T-T-A-A-TA-AAATTCTTAA--TAATTAATATTCTTATATGAATTTACTCAAATCATAAT
1 ATATGATACTATAAAAT-ATAATTTAA-CAAAATTATTAT-TAAATATATTTTAATTAAAAT
* *
26241070 ATATGATACTATAAAAGATAATTTAACATAATTATTATTAAATATATTTTAATTAAAAT
1 ATATGATACTATAAAATATAATTTAACAAAATTATTATTAAATATATTTTAATTAAAAT
* * * * * * * ** * *
26241129 ATATAAT-TTAATAAAAT-T-CTTAATAATCAAAATTCTTATATGAATTTACTAAAATCATAAT
1 ATATGATACT-ATAAAATATAATT--TAA-CAAAATTATTAT-TAAATATATTTTAATTAAAAT
*
26241190 ATATGATACTATAAAATATAATTTGAA-AAAATTAATATTAAATATATTTTAATTAAAAT
1 ATATGATACTATAAAATATAATTT-AACAAAATTATTATTAAATATATTTTAATTAAAAT
26241249 ATATGAT
1 ATATGAT
26241256 TTAATAAAAT
Statistics
Matches: 168, Mismatches: 52, Indels: 40
0.65 0.20 0.15
Matches are distributed among these distances:
52 3 0.02
53 12 0.07
54 19 0.11
55 2 0.01
56 2 0.01
57 4 0.02
58 4 0.02
59 55 0.33
60 30 0.18
61 31 0.18
62 4 0.02
63 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (59 bp):
ATATGATACTATAAAATATAATTTAACAAAATTATTATTAAATATATTTTAATTAAAAT
Found at i:26241275 original size:120 final size:120
Alignment explanation
Indices: 26240856--26241266 Score: 640
Period size: 120 Copynumber: 3.5 Consensus size: 120
26240846 ATTTAATCAT
*
26240856 ATTTAAACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
26240921 ATCAATATTCTTATATGAAATTACTCAAATCATAACATATGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
26240977 ATTTAACATAATTATTATTAAATATATTATAA-T----TA-A-AATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
26241035 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
26241090 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
26241155 TCAAAATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* * * *
26241210 ATTTGAA-AAAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
26241267 TAAAATAATT
Statistics
Matches: 269, Mismatches: 13, Indels: 17
0.90 0.04 0.06
Matches are distributed among these distances:
113 104 0.39
114 2 0.01
115 2 0.01
118 2 0.01
119 2 0.01
120 151 0.56
121 6 0.02
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Found at i:26241336 original size:101 final size:96
Alignment explanation
Indices: 26241205--26241527 Score: 343
Period size: 91 Copynumber: 3.4 Consensus size: 96
26241195 ATACTATAAA
* *
26241205 ATATAATTTGAAAA-AATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTA
1 ATATAATTT-AAAATAATTAATATTAAATATAATTTAA-TAAAATATATAATTT-ATAAAATTT-
*
26241269 AAATAATTATAACTAATAAATTTTCTTATATGAATTT
62 AAATAATT-TGA-TAATAAATTTTCTTATATGAATTT
* ** *
26241306 GTATAATTTAAAATAATTGTTATTAAATATAATTTAATAATAACATATAATTTCATAAAA--T--
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAA-AATATATAATTT-ATAAAATTTAA
**
26241367 -T--CGTGATAATAAATTTTCTTATATGAATTT
64 ATAATTTGATAATAAATTTTCTTATATGAATTT
*
26241397 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--T--
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAA-AATATATAATTT-ATAAAATTTAA
*
26241458 -T--CTTGATAATAAATTTTCTTATATGAATTT
64 ATAATTTGATAATAAATTTTCTTATATGAATTT
*
26241488 ATACAATTTAAAATAATTAATATTAAATATAATTTAATAA
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAA
26241528 TAAAATGTTC
Statistics
Matches: 203, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
91 148 0.73
92 2 0.01
95 1 0.00
99 1 0.00
100 7 0.03
101 44 0.22
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (96 bp):
ATATAATTTAAAATAATTAATATTAAATATAATTTAATAAAATATATAATTTATAAAATTTAAAT
AATTTGATAATAAATTTTCTTATATGAATTT
Found at i:26241357 original size:44 final size:43
Alignment explanation
Indices: 26241307--26241529 Score: 134
Period size: 44 Copynumber: 5.0 Consensus size: 43
26241297 TATGAATTTG
*
26241307 TATAATTTAAAATAATTGTTATTAAATATAATTTAATAATAACA
1 TATAATTTAAAATAATTGTTATTAAATATAATTTAATAAT-ATA
* * * *
26241351 TATAATTTCATAA-AATTCGTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATT-GT--TATTAAATATAAT-TTA-AT-AATATA
**
26241398 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTGTTATTAAATATAATTTAATAAT-ATA
* * * *
26241442 TATAATTTCATAA-AATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATTGTT-AT--TAAATATAAT-TTA-AT-AATATA
* **
26241489 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
1 TATAATTTAAAATAATTGTTATTAAATATAATTTAATAATA
26241530 AAATGTTCTT
Statistics
Matches: 136, Mismatches: 22, Indels: 43
0.68 0.11 0.21
Matches are distributed among these distances:
43 6 0.04
44 43 0.32
45 20 0.15
46 18 0.13
47 43 0.32
48 6 0.04
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (43 bp):
TATAATTTAAAATAATTGTTATTAAATATAATTTAATAATATA
Found at i:26241365 original size:47 final size:46
Alignment explanation
Indices: 26241314--26241529 Score: 146
Period size: 47 Copynumber: 4.7 Consensus size: 46
26241304 TTGTATAATT
* *
26241314 TAAAATAATTGTTATTAAATATAATTTAATAATAACATATAATTTCA
1 TAAAATAATTGATATTAAATATAATTTAATAAT-ATATATAATTTCA
*** * * *
26241361 TAAAATTCGTGATAATAAAT-T-TTCTTATATGAATTTATATAA-TT--
1 TAAAATAATTGATATTAAATATAAT-TTA-AT-AATATATATAATTTCA
*
26241405 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTGATATTAAATATAATTTAATAAT-ATATATAATTTCA
** * * * *
26241452 TAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTATACAA-TT--
1 TAAAATAATTGATATTAAATATAAT-TTA-AT-AATATATATAATTTCA
*
26241496 TAAAATAATTAATATTAAATATAATTTAATAATA
1 TAAAATAATTGATATTAAATATAATTTAATAATA
26241530 AAATGTTCTT
Statistics
Matches: 127, Mismatches: 28, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
43 6 0.05
44 42 0.33
45 12 0.09
46 14 0.11
47 47 0.37
48 6 0.05
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (46 bp):
TAAAATAATTGATATTAAATATAATTTAATAATATATATAATTTCA
Found at i:26241384 original size:91 final size:91
Alignment explanation
Indices: 26241282--26241530 Score: 435
Period size: 91 Copynumber: 2.7 Consensus size: 91
26241272 TAATTATAAC
* **
26241282 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTGTTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
26241347 AACATATAATTTCATAAAATTCGTGA
66 AACATATAATTTCATAAAATTCGTGA
26241373 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * *
26241438 GATATATAATTTCATAAAATTCTTGA
66 AACATATAATTTCATAAAATTCGTGA
*
26241464 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
26241529 AA
66 AA
26241531 AATGTTCTTA
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 150 1.00
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AACATATAATTTCATAAAATTCGTGA
Found at i:26241526 original size:17 final size:15
Alignment explanation
Indices: 26241495--26241533 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
26241485 TTTATACAAT
26241495 TTAAAATAATTAATA
1 TTAAAATAATTAATA
26241510 TTAAATATAATTTAATA
1 TTAAA-ATAA-TTAATA
*
26241527 ATAAAAT
1 TTAAAAT
26241534 GTTCTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 10 0.48
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAATAATTAATA
Found at i:26243128 original size:13 final size:14
Alignment explanation
Indices: 26243098--26243135 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
26243088 TTCATATTTA
*
26243098 ATTTTTTATTCTTTT
1 ATTTTTTA-TCTTGT
26243113 ATTTTTTAT-TTGT
1 ATTTTTTATCTTGT
26243126 ATTTTTTATC
1 ATTTTTTATC
26243136 AAATAGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 1 0.05
15 8 0.38
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (14 bp):
ATTTTTTATCTTGT
Found at i:26264683 original size:21 final size:21
Alignment explanation
Indices: 26264657--26264697 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26264647 ATCTGCTCAA
* *
26264657 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
26264678 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
26264698 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:26274995 original size:6 final size:6
Alignment explanation
Indices: 26274984--26275008 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26274974 GATTTTTTTC
26274984 AAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG A
26275009 CTTGGAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:26275031 original size:50 final size:51
Alignment explanation
Indices: 26274933--26275032 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 51
26274923 CTCCAAAATG
* * *
26274933 AAAATGAAAATGGAGAAATAGAATCATTTGGAAATGAATGTGATTTTTTTC
1 AAAATGAAAATGGAGAAATAAAATCACTTGGAAATGAATCTGATTTTTTTC
* *
26274984 AAAATGAAAAT-GA-AAATGAAAATGACTTGGAAATGAATCT-ATGTTTTTC
1 AAAATGAAAATGGAGAAAT-AAAATCACTTGGAAATGAATCTGATTTTTTTC
26275033 GAATTAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
49 12 0.28
50 20 0.47
51 11 0.26
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (51 bp):
AAAATGAAAATGGAGAAATAAAATCACTTGGAAATGAATCTGATTTTTTTC
Found at i:26278185 original size:10 final size:10
Alignment explanation
Indices: 26278112--26278236 Score: 50
Period size: 10 Copynumber: 12.5 Consensus size: 10
26278102 GATGACATCA
26278112 TAAAAATCT-T
1 TAAAAAT-TAT
26278122 TAAAAAGTTA-
1 TAAAAA-TTAT
26278132 TAAAAATGATAT
1 TAAAAAT--TAT
* *
26278144 TAAAAA-AAC
1 TAAAAATTAT
*
26278153 TAGAAATTAAT
1 TAAAAATT-AT
*
26278164 T-AAATTTA-
1 TAAAAATTAT
26278172 TAAAAATTAT
1 TAAAAATTAT
*
26278182 TAAAAAATA-
1 TAAAAATTAT
*
26278191 TAAAAA-TAG
1 TAAAAATTAT
26278200 TAAACAA-TAT
1 TAAA-AATTAT
*
26278210 TAAAAATTGAA
1 TAAAAATT-AT
*
26278221 AAAAAATTATT
1 TAAAAATTA-T
26278232 TAAAA
1 TAAAA
26278237 GTTAACAAAT
Statistics
Matches: 87, Mismatches: 14, Indels: 27
0.68 0.11 0.21
Matches are distributed among these distances:
8 3 0.03
9 26 0.30
10 35 0.40
11 17 0.20
12 6 0.07
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:26278192 original size:19 final size:19
Alignment explanation
Indices: 26278111--26278217 Score: 69
Period size: 19 Copynumber: 5.5 Consensus size: 19
26278101 TGATGACATC
*
26278111 ATAAAAATCT-TTAAAAAGTT
1 ATAAAAAT-TATTAAAAA-AT
26278131 ATAAAAATGATATTAAAAAA-
1 ATAAAAAT--TATTAAAAAAT
* **
26278151 ACTAGAAATTAATT-AAATTT
1 A-TAAAAATT-ATTAAAAAAT
26278171 ATAAAAATTATTAAAAAAT
1 ATAAAAATTATTAAAAAAT
* *
26278190 ATAAAAA-TAGTAAACAAT
1 ATAAAAATTATTAAAAAAT
26278208 ATTAAAAATT
1 A-TAAAAATT
26278218 GAAAAAAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
18 13 0.19
19 28 0.41
20 14 0.20
21 7 0.10
22 7 0.10
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (19 bp):
ATAAAAATTATTAAAAAAT
Found at i:26278195 original size:18 final size:19
Alignment explanation
Indices: 26278172--26278229 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
26278162 ATTAAATTTA
*
26278172 TAAAAATTATTAAAAAATA-
1 TAAAAA-TAGTAAAAAATAT
*
26278191 TAAAAATAGTAAACAATAT
1 TAAAAATAGTAAAAAATAT
* *
26278210 TAAAAATTG-AAAAAAAAT
1 TAAAAATAGTAAAAAATAT
26278228 TA
1 TA
26278230 TTTAAAAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
18 19 0.58
19 14 0.42
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (19 bp):
TAAAAATAGTAAAAAATAT
Found at i:26292295 original size:21 final size:20
Alignment explanation
Indices: 26292271--26292328 Score: 68
Period size: 18 Copynumber: 3.0 Consensus size: 20
26292261 GCTATTACGG
26292271 TTAAATTATTGTCAAAAATAA
1 TTAAATTATTGT-AAAAATAA
*
26292292 TTAAA-TATTAT-AAAATAA
1 TTAAATTATTGTAAAAATAA
26292310 TTAAATTA-TGTTAAAAATA
1 TTAAATTATTG-TAAAAATA
26292329 TGAACATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 13 0.41
19 3 0.09
20 11 0.34
21 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (20 bp):
TTAAATTATTGTAAAAATAA
Found at i:26298119 original size:155 final size:154
Alignment explanation
Indices: 26297855--26298136 Score: 449
Period size: 154 Copynumber: 1.8 Consensus size: 154
26297845 AGTTTTCTTA
* * *
26297855 AAAACCAAAGCTTTATTTCGAAATAATTGAAAAAAGATCAAAACTTTGTTTTAAAATTTTAAACT
1 AAAACCAAAGCTTTATTTCGAAATAATTGAAAAAAGATCAAAACTTTATTTTAAAAATTTAAAAT
* * *
26297920 TTTCCTTTAAAATGACTAAAAAAATATTATTATTTTTTAAAATCTAAACTTTCTCCTTTTTTTTA
66 TTTCCTGTAAAATGACTAAAAAAATATTATTATTTTTAAAAATCTAAACTTCCT-CTTTTTTTTA
26297985 ATTATAAAAAATCACTATTTTTTTT
130 ATTATAAAAAATCACTATTTTTTTT
* * *
26298010 AAAATCAAAGCTTTATTTCGAAATAGTTG-AAAAATATCAAAACTTTATTTTAAAAATTTAAAAT
1 AAAACCAAAGCTTTATTTCGAAATAATTGAAAAAAGATCAAAACTTTATTTTAAAAATTTAAAAT
*
26298074 TTTCCTGTAAAATGACTAAAAAACATATTTTTATTTTTAAAAATCTAAACTTCCTCTTTTTTT
66 TTTCCTGTAAAATGACTAAAAAA-ATATTATTATTTTTAAAAATCTAAACTTCCTCTTTTTTT
26298137 AAAAAAAAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
154 61 0.53
155 55 0.47
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.43
Consensus pattern (154 bp):
AAAACCAAAGCTTTATTTCGAAATAATTGAAAAAAGATCAAAACTTTATTTTAAAAATTTAAAAT
TTTCCTGTAAAATGACTAAAAAAATATTATTATTTTTAAAAATCTAAACTTCCTCTTTTTTTTAA
TTATAAAAAATCACTATTTTTTTT
Found at i:26304801 original size:21 final size:21
Alignment explanation
Indices: 26304760--26304802 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26304750 TTATTACAAT
* *
26304760 TAACATTATTTTAATATAAAA
1 TAACATTAATTTAATAGAAAA
26304781 TAACATATAATTTAA-AGAAAA
1 TAACAT-TAATTTAATAGAAAA
26304802 T
1 T
26304803 TCCTTCAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (21 bp):
TAACATTAATTTAATAGAAAA
Found at i:26306099 original size:17 final size:19
Alignment explanation
Indices: 26306060--26306101 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
26306050 ATTCTCTGAG
26306060 TTTTTCTATCTTTCTTATC
1 TTTTTCTATCTTTCTTATC
26306079 TTTTTCT-TC-TTCTTGAT-
1 TTTTTCTATCTTTCTT-ATC
26306096 TTTTTC
1 TTTTTC
26306102 CTAATCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 11 0.50
18 4 0.18
19 7 0.32
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTCTATCTTTCTTATC
Found at i:26308285 original size:37 final size:37
Alignment explanation
Indices: 26308235--26308309 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
26308225 CACTTGCTAA
* *
26308235 AGAGACTGGGTCTCATGATTGTATGGCTGGTGACGAC
1 AGAGACTGGGTCTCATGATTGCATGGCTGGGGACGAC
26308272 AGAGACTGGGTCTCATGATTGCATGGCTGGGGACGAC
1 AGAGACTGGGTCTCATGATTGCATGGCTGGGGACGAC
26308309 A
1 A
26308310 CCTTGTCCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.24
Consensus pattern (37 bp):
AGAGACTGGGTCTCATGATTGCATGGCTGGGGACGAC
Found at i:26324709 original size:21 final size:20
Alignment explanation
Indices: 26324664--26324709 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26324654 TTGTTGGAAT
26324664 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
26324683 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
26324704 GGTTGA
1 GGTTGA
26324710 TTGCATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:26332064 original size:6 final size:6
Alignment explanation
Indices: 26332045--26332078 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
26332035 TAAGACTAAG
*
26332045 AAAATA AGAAATA AACATA AAAATA AAAATA AAA
1 AAAATA A-AAATA AAAATA AAAATA AAAATA AAA
26332079 CAAATGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:26333050 original size:9 final size:9
Alignment explanation
Indices: 26333036--26333060 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26333026 TGATAGAGAA
26333036 AAACCATAT
1 AAACCATAT
26333045 AAACCATAT
1 AAACCATAT
26333054 AAACCAT
1 AAACCAT
26333061 TAATTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (9 bp):
AAACCATAT
Found at i:26335886 original size:20 final size:19
Alignment explanation
Indices: 26335863--26335911 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
26335853 CAGGCGCACC
26335863 AAAGTGCAATCAGGAGCAT
1 AAAGTGCAATCAGGAGCAT
*
26335882 GAAAGTGCAATCAGGGGCAT
1 -AAAGTGCAATCAGGAGCAT
26335902 AGAAGTGCAA
1 A-AAGTGCAA
26335912 ATAGGGGTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.41, C:0.14, G:0.31, T:0.14
Consensus pattern (19 bp):
AAAGTGCAATCAGGAGCAT
Found at i:26335917 original size:20 final size:20
Alignment explanation
Indices: 26335884--26336037 Score: 89
Period size: 20 Copynumber: 7.7 Consensus size: 20
26335874 AGGAGCATGA
*
26335884 AAGTGC-AATCAGGGGCATAG
1 AAGTGCAAAT-AGGGGCACAG
* *
26335904 AAGTGCAAATAGGGGTACCG
1 AAGTGCAAATAGGGGCACAG
* *
26335924 AAGTACAAATAGGGGCACAT
1 AAGTGCAAATAGGGGCACAG
* * * *
26335944 ATGTGC-ATTCAGGGGTACCG
1 AAGTGCAAAT-AGGGGCACAG
* * *
26335964 AACTACAAACAGGGGCACAG
1 AAGTGCAAATAGGGGCACAG
* * * *
26335984 ATGTGC-ATTCAGGGGTACTG
1 AAGTGCAAAT-AGGGGCACAG
*
26336004 AAGTACAAATAGGGGCACAG
1 AAGTGCAAATAGGGGCACAG
* *
26336024 ATGTGCAAACAGGG
1 AAGTGCAAATAGGG
26336038 TCATTTCTTC
Statistics
Matches: 94, Mismatches: 35, Indels: 10
0.68 0.25 0.07
Matches are distributed among these distances:
19 3 0.03
20 85 0.90
21 6 0.06
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.16
Consensus pattern (20 bp):
AAGTGCAAATAGGGGCACAG
Found at i:26335938 original size:40 final size:40
Alignment explanation
Indices: 26335894--26336037 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
26335884 AAGTGCAATC
* *
26335894 AGGGGCATAGAAGTGCAAAT-AGGGGTACCGAAGTACAAAT
1 AGGGGCACAGATGTGC-AATCAGGGGTACCGAAGTACAAAT
* * * *
26335934 AGGGGCACATATGTGCATTCAGGGGTACCGAACTACAAAC
1 AGGGGCACAGATGTGCAATCAGGGGTACCGAAGTACAAAT
* *
26335974 AGGGGCACAGATGTGCATTCAGGGGTACTGAAGTACAAAT
1 AGGGGCACAGATGTGCAATCAGGGGTACCGAAGTACAAAT
*
26336014 AGGGGCACAGATGTGCAAACAGGG
1 AGGGGCACAGATGTGCAATCAGGG
26336038 TCATTTCTTC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 2 0.02
40 89 0.98
ACGTcount: A:0.35, C:0.17, G:0.33, T:0.16
Consensus pattern (40 bp):
AGGGGCACAGATGTGCAATCAGGGGTACCGAAGTACAAAT
Found at i:26342641 original size:9 final size:9
Alignment explanation
Indices: 26342627--26342702 Score: 116
Period size: 9 Copynumber: 8.4 Consensus size: 9
26342617 ATAGTGATTC
26342627 AATTCGGTT
1 AATTCGGTT
26342636 AATTCGGTT
1 AATTCGGTT
*
26342645 AATTCGGGT
1 AATTCGGTT
26342654 AATTCGGTT
1 AATTCGGTT
*
26342663 AATTCGGAT
1 AATTCGGTT
*
26342672 AATCCGGTT
1 AATTCGGTT
*
26342681 AATTCAGTT
1 AATTCGGTT
26342690 AATTCGGTT
1 AATTCGGTT
26342699 AATT
1 AATT
26342703 TTTAACCAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:26345506 original size:22 final size:21
Alignment explanation
Indices: 26345481--26345526 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26345471 GAAGTGTGAC
* * *
26345481 TCAGTAGGCACCGTAGTGCAAA
1 TCAGTAGACA-CGAAGTGAAAA
26345503 TCAGTAGACACGAAGTGAAAA
1 TCAGTAGACACGAAGTGAAAA
26345524 TCA
1 TCA
26345527 CATACAAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (21 bp):
TCAGTAGACACGAAGTGAAAA
Found at i:26345524 original size:21 final size:22
Alignment explanation
Indices: 26345467--26345526 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 22
26345457 CCAAAAGTGG
** * *
26345467 CACCGAAGTGTGACTCAGTAGG
1 CACCGAAGTGAAAATCAGTAGA
* *
26345489 CACCGTAGTGCAAATCAGTAGA
1 CACCGAAGTGAAAATCAGTAGA
26345511 CA-CGAAGTGAAAATCA
1 CACCGAAGTGAAAATCA
26345527 CATACAAGCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.17
Consensus pattern (22 bp):
CACCGAAGTGAAAATCAGTAGA
Found at i:26349552 original size:3 final size:3
Alignment explanation
Indices: 26349544--26349569 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26349534 CTTCATATCA
26349544 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
26349570 CAAAGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26357347 original size:23 final size:23
Alignment explanation
Indices: 26357312--26357356 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26357302 TCTTATTTAA
**
26357312 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
26357335 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
26357357 AAAATGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:26361186 original size:91 final size:92
Alignment explanation
Indices: 26361058--26361250 Score: 259
Period size: 92 Copynumber: 2.1 Consensus size: 92
26361048 TTGATTTTAG
* * *
26361058 TAAATTCATATAAGAACATTTTATTATTAAGAATTTATGAAA-TT-ATATATCACTATTAAATTA
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTATGAAATTTAATAT-TAACTATTAAATTA
* *
26361121 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
26361149 TAAATTCATATCAGAA-AATTTATTATCAAGAATTTTATGAAATTTAATATTAATTATTAAATTA
1 TAAATTCATATAAGAACAATTTATTATCAAGAA-TTTATGAAATTTAATATTAACTATTAAATTA
26361213 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
26361241 AAAATTCATA
1 TAAATTCATA
26361251 AAATATAATT
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
90 14 0.16
91 24 0.27
92 45 0.50
93 7 0.08
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (92 bp):
TAAATTCATATAAGAACAATTTATTATCAAGAATTTATGAAATTTAATATTAACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:26361228 original size:24 final size:25
Alignment explanation
Indices: 26361193--26361240 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26361183 TTATGAAATT
26361193 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
26361217 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
26361241 AAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:26361392 original size:66 final size:63
Alignment explanation
Indices: 26361320--26361529 Score: 181
Period size: 66 Copynumber: 3.4 Consensus size: 63
26361310 AATATTTGAT
*
26361320 ATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTACGATTTGAGTAAATTCATATAAG
1 ATATTAATTATTT-AAATTTT-ATTTAAAGTATCATATATTA-GATTTGAGTAAATTCATATAAG
26361385 A
63 A
* * * **
26361386 ATATTAATTATTAAGAATTTTA-TTAAATTAT-ATATTTTA-A-TT-A-T-AA-T-ATAT-TTA
1 ATATTAATTATTTA-AATTTTATTTAAAGTATCATATATTAGATTTGAGTAAATTCATATAAGA
* *
26361440 ATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 ATATTAATTAT-TTAAATTT-TA-TTTAAAGTATCATATATTA-GATTTGAGTAAATTCATATAA
26361504 GA
62 GA
*
26361506 ATATTAATTATTAAGAATTTTATT
1 ATATTAATTATTTA-AATTTTATT
26361530 AAATTATATA
Statistics
Matches: 112, Mismatches: 15, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
53 5 0.04
54 13 0.12
55 5 0.04
56 8 0.07
57 9 0.08
58 1 0.01
59 2 0.02
60 4 0.04
61 2 0.02
62 1 0.01
63 9 0.08
64 8 0.07
65 9 0.08
66 31 0.28
67 5 0.04
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (63 bp):
ATATTAATTATTTAAATTTTATTTAAAGTATCATATATTAGATTTGAGTAAATTCATATAAGA
Found at i:26361411 original size:120 final size:119
Alignment explanation
Indices: 26361281--26361572 Score: 466
Period size: 120 Copynumber: 2.4 Consensus size: 119
26361271 AATTATTTTA
* *
26361281 AATTTTATTAAATCATATATTTTAATTA-AA-ATATTTGATATATTAATTATTTCAAATTT-TCA
1 AATTTTATTAAATTATATATTTTAATTATAATATATTT-A-ATAATAATTATTT--AATTTAT-A
*
26361343 -TTTATAGTATCATATATTACGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
61 TTTTACAGTATCATATATTACGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
26361401 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT-TTAATTTATATTTT
*
26361466 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 ACAGTATCATATATTACGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
26361521 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATTT
26361573 TTAAATTGTG
Statistics
Matches: 163, Mismatches: 4, Indels: 11
0.92 0.02 0.06
Matches are distributed among these distances:
119 8 0.05
120 144 0.88
121 5 0.03
122 6 0.04
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATTTAATTTATATTTTA
CAGTATCATATATTACGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:26361441 original size:15 final size:15
Alignment explanation
Indices: 26361406--26361457 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26361396 TTAAGAATTT
*
26361406 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26361420 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26361434 TATTTAATAATAAT-
1 TATTTAATTATAATA
26361448 TATGTTAATT
1 TAT-TTAATT
26361458 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26361449 original size:54 final size:54
Alignment explanation
Indices: 26361385--26361571 Score: 162
Period size: 54 Copynumber: 3.2 Consensus size: 54
26361375 TTCATATAAG
*
26361385 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTT
* * * *
26361439 AATAATAATTATGT--TAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAT
1 AATAATAATTAT-TAAGAATTT-TA--TTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT
**
26361502 AAG
53 -TT
*
26361505 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTT
1 AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTT
26361559 AATAATAATTATT
1 AATAATAATTATT
26361572 TTTAAATTGT
Statistics
Matches: 102, Mismatches: 15, Indels: 32
0.68 0.10 0.21
Matches are distributed among these distances:
53 5 0.05
54 25 0.25
55 5 0.05
56 4 0.04
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 4 0.04
65 5 0.05
66 13 0.13
67 5 0.05
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (54 bp):
AATAATAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTT
Found at i:26361556 original size:16 final size:16
Alignment explanation
Indices: 26361535--26361573 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
26361525 TTATTAAATT
*
26361535 ATATATTTTAATTATA
1 ATATATTTTAATAATA
26361551 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
26361566 AT-TATTTT
1 ATATATTTT
26361574 TAAATTGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 14 0.67
16 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:26361610 original size:17 final size:18
Alignment explanation
Indices: 26361584--26361622 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26361574 TAAATTGTGG
26361584 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
26361600 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
26361618 AAAAT
1 AAAAT
26361623 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:26361799 original size:15 final size:15
Alignment explanation
Indices: 26361779--26361809 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26361769 AAAACAATAT
26361779 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26361794 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26361809 A
1 A
26361810 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:26365967 original size:17 final size:18
Alignment explanation
Indices: 26365941--26365979 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26365931 CAAATTGTGG
26365941 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
26365957 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
26365975 AAAAT
1 AAAAT
26365980 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:26366156 original size:15 final size:15
Alignment explanation
Indices: 26366136--26366166 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26366126 AAAATAATAT
26366136 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26366151 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
26366166 A
1 A
26366167 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:26366602 original size:16 final size:16
Alignment explanation
Indices: 26366581--26366616 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
26366571 GATTTGATAT
26366581 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26366597 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26366613 TACA
1 TACA
26366617 GCGAACTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26370143 original size:13 final size:13
Alignment explanation
Indices: 26370127--26370166 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
26370117 ATTTGTTTAA
* *
26370127 CATTTCACGTCTT
1 CATTTCAAGTATT
26370140 CATTTCAAGTATT
1 CATTTCAAGTATT
*
26370153 CATTTCAATTATT
1 CATTTCAAGTATT
26370166 C
1 C
26370167 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.05, T:0.47
Consensus pattern (13 bp):
CATTTCAAGTATT
Found at i:26375420 original size:56 final size:56
Alignment explanation
Indices: 26375334--26375453 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
26375324 ACAAGGGATG
26375334 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
26375390 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
26375446 ATGGGCAA
1 ATGGGCAA
26375454 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:26376681 original size:39 final size:40
Alignment explanation
Indices: 26376581--26376765 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
26376571 TCGAATGATG
* * * * *
26376581 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTA-AT
* * *
26376622 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26376661 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26376700 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26376739 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
26376766 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.32
40 74 0.62
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26376723 original size:79 final size:81
Alignment explanation
Indices: 26376581--26376765 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
26376571 TCGAATGATG
* * * *
26376581 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATATTCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26376645 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
26376660 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26376722 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26376740 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
26376766 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26376788 original size:79 final size:79
Alignment explanation
Indices: 26376634--26376798 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
26376624 GGACTAAGAT
* **
26376634 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAA
* *
26376699 ATCCGGGTTAAGTC
66 ATCCGAGTTAAATC
* * *
26376713 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-C
* *
26376776 TATATCC-AGTTAAATT
63 TAAATCCGAGTTAAATC
26376792 CCGAAGG
1 CCGAAGG
26376799 TACATGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAA
ATCCGAGTTAAATC
Found at i:26382773 original size:22 final size:20
Alignment explanation
Indices: 26382726--26382777 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
26382716 CTATAATTCG
*
26382726 TTTTTATTTATATATTTTGT
1 TTTTTATTTATATATTTTAT
*
26382746 TGTTTTCATTTATTTATTTCTAT
1 T-TTTT-ATTTATATATTT-TAT
26382769 TTTTT-TTTA
1 TTTTTATTTA
26382778 AAAATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 5 0.19
21 4 0.15
22 15 0.56
23 3 0.11
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (20 bp):
TTTTTATTTATATATTTTAT
Found at i:26383686 original size:98 final size:98
Alignment explanation
Indices: 26383566--26383762 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
26383556 TTAAAAATAA
* * *
26383566 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
26383631 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
26383664 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
26383729 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
26383762 T
1 T
26383763 TTTATTGTAC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACATATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:26387742 original size:21 final size:21
Alignment explanation
Indices: 26387716--26387779 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
26387706 GGATCCAATG
26387716 TTCGAAGATCTATCTCTTAGC
1 TTCGAAGATCTATCTCTTAGC
* **
26387737 TTCGAA-ATAC-ACCTCGAATG-
1 TTCGAAGAT-CTATCTCTTA-GC
26387757 TTCGAAGATCTATCTCTTAGC
1 TTCGAAGATCTATCTCTTAGC
26387778 TT
1 TT
26387780 TGAAATACAC
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (21 bp):
TTCGAAGATCTATCTCTTAGC
Done.