Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58101237
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1550000 characters in sequence are not A, C, G, or T
File 94 of 199
Found at i:26387769 original size:41 final size:41
Alignment explanation
Indices: 26387712--26387796 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
26387702 GATGGGATCC
26387712 AATGTTCGAAGATCTATCTCTTAGCTTCGAAATACACCTCG
1 AATGTTCGAAGATCTATCTCTTAGCTTCGAAATACACCTCG
*
26387753 AATGTTCGAAGATCTATCTCTTAGCTTTGAAATACACCTCG
1 AATGTTCGAAGATCTATCTCTTAGCTTCGAAATACACCTCG
26387794 AAT
1 AAT
26387797 CACTCAATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (41 bp):
AATGTTCGAAGATCTATCTCTTAGCTTCGAAATACACCTCG
Found at i:26388935 original size:20 final size:19
Alignment explanation
Indices: 26388910--26388948 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
26388900 CTAGAAAGAT
26388910 AAATAAAAACTCTTGCAAAA
1 AAATAAAAACTCTT-CAAAA
* *
26388930 AAATAAGACCTCTTCAAAA
1 AAATAAAAACTCTTCAAAA
26388949 TAAGTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.56, C:0.18, G:0.05, T:0.21
Consensus pattern (19 bp):
AAATAAAAACTCTTCAAAA
Found at i:26390255 original size:28 final size:27
Alignment explanation
Indices: 26390220--26390290 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
26390210 ATAAAAAATT
*
26390220 TTTACCAAAATGT-TATAACTTTTTTTTA
1 TTTACCAAAATATATATAA--TTTTTTTA
*
26390248 TTTACCAAAAAATATATAATTTTTTTA
1 TTTACCAAAATATATATAATTTTTTTA
*
26390275 TTTACCGAAATATATA
1 TTTACCAAAATATATA
26390291 AAAAAACAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 22 0.58
28 11 0.29
29 5 0.13
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTACCAAAATATATATAATTTTTTTA
Found at i:26390382 original size:27 final size:27
Alignment explanation
Indices: 26390352--26390418 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
26390342 CGCCAATGGT
26390352 ATTGGCGGCACCAAAGGTACCAAAACC
1 ATTGGCGGCACCAAAGGTACCAAAACC
* * *
26390379 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTACCAAAACC
26390406 ATTGGCGGCACCA
1 ATTGGCGGCACCA
26390419 GTTAATAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTACCAAAACC
Found at i:26390470 original size:4 final size:4
Alignment explanation
Indices: 26390461--26390618 Score: 101
Period size: 4 Copynumber: 37.0 Consensus size: 4
26390451 GAAAGAGAGG
* *
26390461 GAAA GAAA GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA GAAA AAGAA GAAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA GA-AA G-AAA
* *
26390513 GAAAA GGAAA G-GA GAAGA GAAA GAAA GAAA GAAA -TAA G-AA G-AA GAAAA
1 G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
*
26390561 GGAAAA GAAAA GAGAA GAAA -AAA GAAA GAAA GAAG GAAA GAAAA GGAAA
1 -G-AAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -GAAA
26390610 GAGAA GAAA
1 GA-AA GAAA
26390619 AAAAAGAAGA
Statistics
Matches: 129, Mismatches: 9, Indels: 32
0.76 0.05 0.19
Matches are distributed among these distances:
3 13 0.10
4 65 0.50
5 42 0.33
6 9 0.07
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:26390473 original size:18 final size:17
Alignment explanation
Indices: 26390450--26390618 Score: 79
Period size: 18 Copynumber: 9.8 Consensus size: 17
26390440 GGTGGGGGGC
26390450 AGAAAGAGAGG---GAA
1 AGAAAGAGAGGAAAGAA
*
26390464 AGAAAGA-AAGAAAGAA
1 AGAAAGAGAGGAAAGAA
26390480 AGAAAGGAGAGGAAAGAA
1 AGAAA-GAGAGGAAAGAA
* *
26390498 AGAAAAAGAAGAAAAGAAA
1 AGAAAGAG-AGGAAAG-AA
26390517 AGGAAAGGAGAAGAGAAAGAA
1 A-GAAA-GAG-AG-GAAAGAA
* **
26390538 AGAAAGAAATAAGAAG-A
1 AGAAAGAGAGGA-AAGAA
*
26390555 AGAAA-AG-GAAAAGAAA
1 AGAAAGAGAGGAAAG-AA
*
26390571 AGAGAAGA-A-AAAAGAA
1 AGA-AAGAGAGGAAAGAA
26390587 AGAAAGA-AGGAAAGAAA
1 AGAAAGAGAGGAAAG-AA
*
26390604 AGGAAAGAGAAGAAA
1 A-GAAAGAGAGGAAA
26390619 AAAAAGAAGA
Statistics
Matches: 122, Mismatches: 13, Indels: 35
0.72 0.08 0.21
Matches are distributed among these distances:
13 2 0.02
14 10 0.08
15 7 0.06
16 22 0.18
17 21 0.17
18 30 0.25
19 10 0.08
20 8 0.07
21 8 0.07
22 4 0.03
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (17 bp):
AGAAAGAGAGGAAAGAA
Found at i:26390494 original size:30 final size:30
Alignment explanation
Indices: 26390450--26390546 Score: 110
Period size: 30 Copynumber: 3.2 Consensus size: 30
26390440 GGTGGGGGGC
26390450 AGAAA-GAGAGGGAAAGAAAGAAAGAAAGAA
1 AGAAAGGAGA-GGAAAGAAAGAAAGAAAGAA
*
26390480 AGAAAGGAGAGGAAAGAAAGAAAAAGAAGAAA
1 AGAAAGGAGAGGAAAGAAAGAAAGA-AAG-AA
*
26390512 AGAAAAGGAAAGG--AGAAGAGAAAGAAAGAA
1 AG-AAAGGAGAGGAAAGAA-AGAAAGAAAGAA
26390542 AGAAA
1 AGAAA
26390547 TAAGAAGAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
29 3 0.05
30 23 0.39
31 14 0.24
32 10 0.17
33 9 0.15
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (30 bp):
AGAAAGGAGAGGAAAGAAAGAAAGAAAGAA
Found at i:26390543 original size:48 final size:49
Alignment explanation
Indices: 26390466--26390656 Score: 155
Period size: 48 Copynumber: 3.9 Consensus size: 49
26390456 AGAGGGAAAG
*
26390466 AAAG-AAAGA-AAGAAAGAAAGGAGAGGAAAGAAAGAAAAAGAAGAAAA-GA
1 AAAGAAAAGAGAAGAAA-AAA-GA-AAGAAAGAAAGAAAAAGAAGAAAAGGA
* * * *
26390515 AAAGGAAAGGAGAAG-AGAAAGAAAGAAAGAAATAAGAAGAAGAAAAGGA
1 AAA-GAAAAGAGAAGAAAAAAGAAAGAAAGAAAGAAAAAGAAGAAAAGGA
* *
26390564 AAAGAAAAGAGAAGAAAAAAGAAAGAAAGAAGGAAAGAA-AAGGAAA-GA
1 AAAGAAAAGAGAAGAAAAAAGAAAGAAAGAAAGAAA-AAGAAGAAAAGGA
* * ** * *
26390612 GAAGAAAA-AAAAGAAGAAAAGAGGGAAGGAAGGAAAAA-AAGAAAA
1 AAAGAAAAGAGAAGAA-AAAAGAAAGAAAGAAAGAAAAAGAAGAAAA
26390657 AAAAAGTAAT
Statistics
Matches: 118, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
47 14 0.12
48 57 0.48
49 33 0.28
50 6 0.05
51 5 0.04
52 3 0.03
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.01
Consensus pattern (49 bp):
AAAGAAAAGAGAAGAAAAAAGAAAGAAAGAAAGAAAAAGAAGAAAAGGA
Found at i:26390544 original size:38 final size:36
Alignment explanation
Indices: 26390460--26390662 Score: 156
Period size: 38 Copynumber: 5.6 Consensus size: 36
26390450 AGAAAGAGAG
*
26390460 GGAAAGAAAGAAAGAAAGAAAG-AAAGGAGAGG-AAA
1 GGAAAGAAAGAAAGAAA-AAAGAAAAGGAAAGGAAAA
*
26390495 -GAAAG-AA-AAAGAAGAAAAGAAAAGGAAAGGAGAA
1 GGAAAGAAAGAAAGAA-AAAAGAAAAGGAAAGGAAAA
* *
26390529 GAGAAAGAAAGAAAGAAATAAGAAGAAGAAAAGGAAAA
1 G-GAAAGAAAGAAAGAAAAAAGAA-AAGGAAAGGAAAA
*
26390567 GAAAAGAGAAGAAA-AAAGAAAGAAAGAAGGAAA-GAAAA
1 GGAAAGA-AAGAAAGAAA-AAAG-AA-AAGGAAAGGAAAA
* *
26390605 GGAAAGAGAAGAAAAAAAAGAAGAAAA-G-AGGGAAGGAA
1 GGAAAGA-AAGAAAGAAAA-AAGAAAAGGAAAGGAA--AA
*
26390643 GGAAAAAAAGAAA-AAAAAAG
1 GGAAAGAAAGAAAGAAAAAAG
26390663 TAATTTTATT
Statistics
Matches: 141, Mismatches: 11, Indels: 32
0.77 0.06 0.17
Matches are distributed among these distances:
32 10 0.07
33 12 0.09
34 7 0.05
35 4 0.03
36 13 0.09
37 24 0.17
38 56 0.40
39 15 0.11
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.00
Consensus pattern (36 bp):
GGAAAGAAAGAAAGAAAAAAGAAAAGGAAAGGAAAA
Found at i:26390584 original size:66 final size:65
Alignment explanation
Indices: 26390464--26390619 Score: 160
Period size: 66 Copynumber: 2.3 Consensus size: 65
26390454 AGAGAGGGAA
* * *
26390464 AGAAAGAAAGAAAGAAAGAAAGGAGAGGAAAGAAAGAAAAAGAAGAAAAGAAAAGGAAAG-GAGA
1 AGAAAGAAAGAAAGAAAGAAAAGAGAGAAAAGAAAGAAAAAGAAG-AAAGAAAA-GAAAGAAAGA
26390528 AG
64 AG
*
26390530 AGAAAGAAAGAAAGAAATAAGAAGA-AGAAAAGGAAAAGAAAAGAGAAG-AA-AAAAGAAAGAAA
1 AGAAAGAAAGAAAGAAAGAA-AAGAGAGAAAA-G-AAAGAAAA-AGAAGAAAGAAAAGAAAGAAA
26390592 GAAG
62 GAAG
26390596 -GAAAGAAAAGGAAAGAGAAGAAAA
1 AGAAAG-AAA-GAAAGA-AAGAAAA
26390620 AAAAGAAGAA
Statistics
Matches: 77, Mismatches: 5, Indels: 15
0.79 0.05 0.15
Matches are distributed among these distances:
65 10 0.13
66 36 0.47
67 14 0.18
68 12 0.16
69 5 0.06
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.01
Consensus pattern (65 bp):
AGAAAGAAAGAAAGAAAGAAAAGAGAGAAAAGAAAGAAAAAGAAGAAAGAAAAGAAAGAAAGAAG
Found at i:26390633 original size:5 final size:5
Alignment explanation
Indices: 26390492--26390626 Score: 82
Period size: 5 Copynumber: 26.2 Consensus size: 5
26390482 AAAGGAGAGG
* * *
26390492 AAAG- AAAGA AAA-A GAAGA AAAGA AAAGGA AAGGA GAAGA GAAAG- AAAG-
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA-GA AAAGA AAAGA -AAAGA AAAGA
* *
26390540 AAAGAA ATAAGA AGAAGA AAAGGA AAAGA AAAGA GAAGA AAAAA GAAAGAA
1 AAAG-A A-AAGA A-AAGA AAA-GA AAAGA AAAGA AAAGA AAAGA -AAAG-A
* * *
26390591 AGAAGG AAAGA AAAGG AAAGA GAAGA AAA-A AAAGA A
1 A-AAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA A
26390627 GAAAAGAGGG
Statistics
Matches: 102, Mismatches: 17, Indels: 23
0.72 0.12 0.16
Matches are distributed among these distances:
4 19 0.19
5 51 0.50
6 25 0.25
7 7 0.07
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.01
Consensus pattern (5 bp):
AAAGA
Found at i:26390633 original size:44 final size:45
Alignment explanation
Indices: 26390493--26390648 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 45
26390483 AAGGAGAGGA
* * *
26390493 AAGAAAGAAAAAGAAGAAAAGAAAAGGAAAGGAGAAGAGAAAGAAAG
1 AAGAAA-AGAAAGAAGGAAAGAAAAGGAAA-GAGAAGAGAAAAAAAG
* * *
26390540 AA-AGAAA-TAAGAA-G-AAGAAAAGGAAAAGAAAAGAGAAGAAAA-
1 AAGA-AAAGAAAGAAGGAAAGAAAAGG-AAAGAGAAGAGAAAAAAAG
26390582 AAG-AAAGAAAGAAGGAAAGAAAAGGAAAGAGAAGA-AAAAAAAG
1 AAGAAAAGAAAGAAGGAAAGAAAAGGAAAGAGAAGAGAAAAAAAG
** *
26390625 AAGAAAAGAGGGAAGGAAGGAAAA
1 AAGAAAAGAAAGAAGGAAAGAAAA
26390649 AAAGAAAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
41 3 0.03
42 13 0.14
43 34 0.38
44 29 0.32
45 5 0.06
46 2 0.02
47 4 0.04
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.01
Consensus pattern (45 bp):
AAGAAAAGAAAGAAGGAAAGAAAAGGAAAGAGAAGAGAAAAAAAG
Found at i:26391647 original size:160 final size:158
Alignment explanation
Indices: 26391481--26392234 Score: 532
Period size: 160 Copynumber: 4.7 Consensus size: 158
26391471 AATATGATGC
* * *
26391481 ACTGAAATAATGTAAAATTATAAAA-AGACTAAGTTTATGATATTTTTTAATGTAATAAAATGCG
1 ACTGAAATAATATAAAATAATAAAATAGA--AA-TTTATGATATTTTTTAAAGTAATAAAATGCG
* *
26391545 GAGAAAAAAATACGAACAAATGACAGAAGTAAGAGTGTATTACTAACTTTTATAAAATTCAGAAA
63 GAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTATAAAATTCAAAAA
26391610 TAATTAATACAAAATATTTCAAAGAAAATGT
128 TAATTAATACAAAATATTTCAAAGAAAATGT
* * * *
26391641 ACTGAAATCATATAAAACAATAAAATACGAGAATAATAT-ATTTTTATTTAAAGTAATAAAAAT-
1 ACTGAAATAATATAAAATAATAAAATA-GA-AAT-TTATGATATTT-TTTAAAGTAAT-AAAATG
* * * * * ** *** * *
26391704 C-GAGAAAATAATACGAGCAAAGGGCATG-GGTAAGGGT-TATTTTTTACAC-CAAAT-TAATTT
61 CGGAGAAAAAAATACGAACAAATGGCA-GAAGTAAGAGTGTA-TTACTA-ACTTTTATAAAATTC
* * * * ** *
26391764 AAATAACACACTAGAGTA-ATAA-ATTTCAAACATTATGC
123 AAA-AATA-ATTA-A-TACAAAATATTTCAAAGAAAATGT
* * *
26391802 ACTGAAATAATGTAAAATTATAAAATTAGAAA-TTGTGATATTTTTTAAAGTAATAAAATGCGGA
1 ACTGAAATAATATAAAATAATAAAA-TAGAAATTTATGATATTTTTTAAAGTAATAAAATGCGGA
26391866 GAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTATAAAATTCAAAAATA
65 GAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTATAAAATTCAAAAATA
26391931 ATTAATACAAAATATTTCAAAGAAAATGT
130 ATTAATACAAAATATTTCAAAGAAAATGT
* * *
26391960 ACTGAAATAATATAAAATAATAAAATACAAGAATAATAT-ATTTTTATTTAAAGTAATAAAAAT-
1 ACTGAAATAATATAAAATAATAAAATA-GA-AAT-TTATGATATTT-TTTAAAGTAAT-AAAATG
* * * ** * *
26392023 C-GAGAAAATAATACGAGCAAAGGGCAGGGGTAAGGGT-TATT--T---TTTTACACCAAATT-A
61 CGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTATA--AAATTCA
* * * * ** *
26392080 ATTTAAATAA-CACACTAGAGTAATAAATTTCAAACATTATGC
124 A---AAATAATTA-A-TACA--AA-ATATTTCAAAGAAAATGT
* *
26392122 ACTGAAATAATGTAAAATTATAAAATTAGAAA-TTATGATATTTTTTAAAGTAATAAAATGCGGA
1 ACTGAAATAATATAAAATAATAAAA-TAGAAATTTATGATATTTTTTAAAGTAATAAAATGCGGA
* * * * *
26392186 GAAAAAATTATGAATAAATGGCCA-AAGTAAGAAT-TTTCTACTAACTTTT
65 GAAAAAAATACGAACAAATGG-CAGAAGTAAGAGTGTAT-TACTAACTTTT
26392235 TTTCAACTTG
Statistics
Matches: 454, Mismatches: 91, Indels: 92
0.71 0.14 0.14
Matches are distributed among these distances:
154 6 0.01
155 2 0.00
156 7 0.02
157 13 0.03
158 68 0.15
159 75 0.17
160 140 0.31
161 79 0.17
162 55 0.12
163 5 0.01
166 4 0.01
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.30
Consensus pattern (158 bp):
ACTGAAATAATATAAAATAATAAAATAGAAATTTATGATATTTTTTAAAGTAATAAAATGCGGAG
AAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTATAAAATTCAAAAATAA
TTAATACAAAATATTTCAAAGAAAATGT
Found at i:26392027 original size:319 final size:320
Alignment explanation
Indices: 26391446--26392234 Score: 1336
Period size: 319 Copynumber: 2.5 Consensus size: 320
26391436 TATTCCCCCT
* * * *
26391446 TAACACACTAAATTAATAAATTTCAAATATGATGCACTGAAATAATGTAAAATTATAAAA--AGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
* *
26391509 CTAAGTTTATGATATTTTTTAATGTAATAAAATGCGGAGAAAAAAATACGAACAAATGACAGAAG
66 --AA--TTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAG
*
26391574 TAAGAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAGAAAAT
127 TAAGAGTGTATTACTAACTTTTATAAAATTCAAAAATAATTAATACAAAATATTTCAAAGAAAAT
* *
26391639 GTACTGAAATCATATAAAACAATAAAATACGAGAATAATATATTTTTATTTAAAGTAATAAAAAT
192 GTACTGAAATAATATAAAACAATAAAATACAAGAATAATATATTTTTATTTAAAGTAATAAAAAT
*
26391704 CGAGAAAATAATACGAGCAAAGGGCATGGGTAAGGGTTA-TTTTTTACACCAAATTAATTTAAA
257 CGAGAAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
26391767 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
*
26391832 AATTGTGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAG
66 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAG
26391897 AGTGTATTACTAACTTTTATAAAATTCAAAAATAATTAATACAAAATATTTCAAAGAAAATGTAC
131 AGTGTATTACTAACTTTTATAAAATTCAAAAATAATTAATACAAAATATTTCAAAGAAAATGTAC
*
26391962 TGAAATAATATAAAATAATAAAATACAAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAG
196 TGAAATAATATAAAACAATAAAATACAAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAG
26392027 AAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
261 AAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
26392087 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
* * *
26392152 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAATTATGAATAAATGGCCA-AAGTAA
66 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGG-CAGAAGTAA
* *
26392216 GAAT-TTTCTACTAACTTTT
130 GAGTGTAT-TACTAACTTTT
26392235 TTTCAACTTG
Statistics
Matches: 445, Mismatches: 18, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
319 222 0.50
320 160 0.36
321 60 0.13
323 3 0.01
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.30
Consensus pattern (320 bp):
TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAG
AGTGTATTACTAACTTTTATAAAATTCAAAAATAATTAATACAAAATATTTCAAAGAAAATGTAC
TGAAATAATATAAAACAATAAAATACAAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAG
AAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
Found at i:26397514 original size:17 final size:18
Alignment explanation
Indices: 26397478--26397516 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
26397468 TTACTAAGTT
26397478 ACATCTTAATACATTAATA
1 ACATCTTAATACA-TAATA
26397497 ACATCTTAATAC-TAATA
1 ACATCTTAATACATAATA
26397514 ACA
1 ACA
26397517 ACAACAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
19 12 0.60
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (18 bp):
ACATCTTAATACATAATA
Found at i:26397620 original size:19 final size:21
Alignment explanation
Indices: 26397596--26397634 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26397586 ACTAAAATAA
*
26397596 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
26397615 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
26397635 ATCAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:26397889 original size:26 final size:25
Alignment explanation
Indices: 26397860--26397929 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 25
26397850 ATTTTTTTTA
26397860 ATATATTTTGGTAAATAAAAAAATTT
1 ATATATTTTGGTAAATAAAAAAA-TT
*
26397886 ATATATTTTTTAGTAAATAAAAAAATT
1 ATATA--TTTTGGTAAATAAAAAAATT
26397913 ATAATATTTTGGTAAAT
1 AT-ATATTTTGGTAAAT
26397930 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 15 0.38
27 4 0.10
28 20 0.51
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (25 bp):
ATATATTTTGGTAAATAAAAAAATT
Found at i:26403246 original size:24 final size:24
Alignment explanation
Indices: 26403214--26403261 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
26403204 CACTTTATGA
26403214 GTAATAATAAAAAATCCAAATTAT
1 GTAATAATAAAAAATCCAAATTAT
26403238 GTAATAATAAAAAATCCAAATTAT
1 GTAATAATAAAAAATCCAAATTAT
26403262 CTTTGGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (24 bp):
GTAATAATAAAAAATCCAAATTAT
Found at i:26404196 original size:13 final size:13
Alignment explanation
Indices: 26404178--26404220 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
26404168 AAATTTGAAT
26404178 TATTTAGTGATAA
1 TATTTAGTGATAA
26404191 TATTTAG-GAT--
1 TATTTAGTGATAA
26404201 TATTTAGTGATAA
1 TATTTAGTGATAA
26404214 TATTTAG
1 TATTTAG
26404221 GAAAAACCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:26404202 original size:23 final size:23
Alignment explanation
Indices: 26404176--26404222 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26404166 TAAAATTTGA
26404176 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAATATTTAGG
26404199 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTGATAATATTTAGG
26404222 A
1 A
26404223 AAAACCTAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (23 bp):
ATTATTTAGTGATAATATTTAGG
Found at i:26409908 original size:42 final size:41
Alignment explanation
Indices: 26409800--26410058 Score: 263
Period size: 42 Copynumber: 6.2 Consensus size: 41
26409790 AACTTTTGCA
* * *
26409800 GCGCTTACAGAAAAACGCCGCTAAAGGTCATGTTCTTTAGTG
1 GCGCTTA-AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCG
* * *
26409842 GCGC-TACAAAAAAGCACCGCTAAAGATCATGTCCTTTAGCG
1 GCGCTTA-AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCG
*
26409883 GCACTTAAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCG
1 GCGCTTAAAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCG
* *
26409925 GCGCTTAAACAAAAACGCCGCTAAA-AGTAATGTTCTATAGCG
1 GCGCTTAAA-AAAAACGCCGCTAAAGA-TCATGTTCTTTAGCG
** *
26409967 GCGCTTGGTAAAAAACGCCGCTACAGATCATGTTCTTTAGCG
1 GCGCTT-AAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCG
* ** * *
26410009 GCACTTTCACTACAAACGCCGCTAAA-AGTAATGTTCTTTAGCG
1 GCGC-TT-AAAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCG
26410052 GCGCTTA
1 GCGCTTA
26410059 CTTCACAAAC
Statistics
Matches: 182, Mismatches: 27, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
41 42 0.23
42 102 0.56
43 38 0.21
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (41 bp):
GCGCTTAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCG
Found at i:26409995 original size:84 final size:83
Alignment explanation
Indices: 26409800--26410058 Score: 299
Period size: 84 Copynumber: 3.1 Consensus size: 83
26409790 AACTTTTGCA
* * * * *
26409800 GCGCTTACAGAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGGCGC-TACAA-AAAAGCACCGCT
1 GCGCTTA-AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-AACAAAAACGCCGCT
* *
26409863 -AAAGATCATGTCCTTTAGCG
64 AAAAG-TAATGTTCTTTAGCG
*
26409883 GCACTTAAAAAAAGACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAACAAAAACGCCGCTA
1 GCGCTTAAAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAACAAAAACGCCGCTA
*
26409948 AAAGTAATGTTCTATAGCG
65 AAAGTAATGTTCTTTAGCG
** * * ** *
26409967 GCGCTTGGTAAAAAACGCCGCTACAGATCATGTTCTTTAGCGGCACTTTCACTACAAACGCCGCT
1 GCGCTT-AAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAAC-AAAAACGCCGCT
26410032 AAAAGTAATGTTCTTTAGCG
64 AAAAGTAATGTTCTTTAGCG
26410052 GCGCTTA
1 GCGCTTA
26410059 CTTCACAAAC
Statistics
Matches: 151, Mismatches: 19, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
82 5 0.03
83 38 0.25
84 63 0.42
85 45 0.30
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (83 bp):
GCGCTTAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAACAAAAACGCCGCTAA
AAGTAATGTTCTTTAGCG
Found at i:26410525 original size:21 final size:21
Alignment explanation
Indices: 26410501--26410567 Score: 116
Period size: 21 Copynumber: 3.2 Consensus size: 21
26410491 TCTCTCACTT
*
26410501 CTTCTCTCGCTGCAGCCTCTG
1 CTTCTCTCGTTGCAGCCTCTG
26410522 CTTCTCTCGTTGCAGCCTCTG
1 CTTCTCTCGTTGCAGCCTCTG
*
26410543 CTTCCCTCGTTGCAGCCTCTG
1 CTTCTCTCGTTGCAGCCTCTG
26410564 CTTC
1 CTTC
26410568 CTTTGCTGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.04, C:0.42, G:0.18, T:0.36
Consensus pattern (21 bp):
CTTCTCTCGTTGCAGCCTCTG
Found at i:26410583 original size:42 final size:42
Alignment explanation
Indices: 26410501--26410587 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
26410491 TCTCTCACTT
* * *
26410501 CTTCTCTCGCTGCAGCCTCTGCTTCTCTCGTTGCAGCCTCTG
1 CTTCCCTCGCTGCAGCCTCTGCTTCTCTCGCTGCACCCTCTG
* * *
26410543 CTTCCCTCGTTGCAGCCTCTGCTTC-CTTTGCTGCCCCCTCTG
1 CTTCCCTCGCTGCAGCCTCTGCTTCTC-TCGCTGCACCCTCTG
26410585 CTT
1 CTT
26410588 TAAGTTGTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.03, C:0.43, G:0.17, T:0.37
Consensus pattern (42 bp):
CTTCCCTCGCTGCAGCCTCTGCTTCTCTCGCTGCACCCTCTG
Found at i:26414608 original size:7 final size:7
Alignment explanation
Indices: 26414593--26414677 Score: 64
Period size: 7 Copynumber: 12.0 Consensus size: 7
26414583 ACTAAAGCGG
26414593 CCTAAAC
1 CCTAAAC
*
26414600 CCCAAAC
1 CCTAAAC
*
26414607 CCCAAAC
1 CCTAAAC
*
26414614 CTTAAAC
1 CCTAAAC
26414621 CCTAAAC
1 CCTAAAC
*
26414628 TTCTAAAC
1 -CCTAAAC
26414636 CCTAAAC
1 CCTAAAC
*
26414643 CCAAAAC
1 CCTAAAC
*
26414650 ACC-AAAA
1 -CCTAAAC
* *
26414657 CCTACAT
1 CCTAAAC
*
26414664 CATAAAC
1 CCTAAAC
26414671 CCTAAAC
1 CCTAAAC
26414678 TCAAAACTCT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
6 2 0.03
7 51 0.84
8 8 0.13
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.14
Consensus pattern (7 bp):
CCTAAAC
Found at i:26414941 original size:16 final size:17
Alignment explanation
Indices: 26414922--26414956 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26414912 CAAATATGAC
26414922 AAACTA-AATATATAAT
1 AAACTACAATATATAAT
*
26414938 AAACTACATTATATAAT
1 AAACTACAATATATAAT
26414955 AA
1 AA
26414957 CCTAGCGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (17 bp):
AAACTACAATATATAAT
Found at i:26415177 original size:94 final size:95
Alignment explanation
Indices: 26415003--26415178 Score: 255
Period size: 95 Copynumber: 1.9 Consensus size: 95
26414993 TGTTTTCGCG
* * * *
26415003 GCGTTTTCCCGTAACCGCCACTACTGCTAGTATACATCAAGACCAAAGCGCTGCATTTTTGTTAA
1 GCGTTTTCCCATAACCGCCACTAATGCTAATATACATCAAGACCAAAGCGCTGCATTTTGGTTAA
*
26415068 TATATTTTGCGGCGCTTGTATGCATTAGCA
66 GATATTTTGCGGCGCTTGTATGCATTAGCA
* * * * *
26415098 GCGTTTTCCCATAAGCGCCACTAATTCTAATGTACCTCAAGACCAAA-CTCTGCATTTTGGTTAA
1 GCGTTTTCCCATAACCGCCACTAATGCTAATATACATCAAGACCAAAGCGCTGCATTTTGGTTAA
26415162 GATATTTTGCGGCGCTT
66 GATATTTTGCGGCGCTT
26415179 CGAATGACGC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
94 31 0.44
95 40 0.56
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (95 bp):
GCGTTTTCCCATAACCGCCACTAATGCTAATATACATCAAGACCAAAGCGCTGCATTTTGGTTAA
GATATTTTGCGGCGCTTGTATGCATTAGCA
Found at i:26415286 original size:114 final size:113
Alignment explanation
Indices: 26415086--26415745 Score: 788
Period size: 114 Copynumber: 5.8 Consensus size: 113
26415076 GCGGCGCTTG
* * * *
26415086 TATGCATTAGCAGCGTTTTCCCATAAGCGCCACTAATTCTAATGTACCTCAAGACCAAACTCTGC
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
* * * *
26415151 ATTTTGGTTAAGATATTTTGCGGCGCTTCGAATGACGCGCCGCTAATAC
66 GTTTTGGTTAAGATATGTTGCGGCGCTTTG-ACGACGCGCCGCTAATAC
* **
26415200 TATGCATTAGCGGCGTTTTCGAATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
*
26415265 GTTTTGGTTAAGATATGTTGCGACGCTTTTGACGACGCGCCGCTAATAC
66 GTTTTGGTTAAGATATGTTGCGGCGC-TTTGACGACGCGCCGCTAATAC
* * * * *
26415314 TATGCTTTAGCGGCGTTTTCCAATAAACACCACTAATTCTAGTATACCTCAAGACCAAACTCTGC
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
* *
26415379 GTTTTGGTTAAGATATGTTGCGGCGCTTTTGACGACACGCCACTAATAC
66 GTTTTGGTTAAGATATGTTGCGGCGC-TTTGACGACGCGCCGCTAATAC
* *
26415428 TATGCGTTAGCGGCGTTTTCCCATAAGCGCTACTAATTCTAATATACCTTAAGACCAAACTCTGC
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
* * * * * **
26415493 GTTTTGGTTAATATATTTTGAGGCGCTTTTCACAAATCGCCGCTAATAC
66 GTTTTGGTTAAGATATGTTGCGGCGC-TTTGACGACGCGCCGCTAATAC
* * ** * * *
26415542 T-TGCTTTAGTGGAGTTTTTTCATATGCGCCACTAATTCTAATATACATAAAGACCAAACTCTGC
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
* * * *
26415606 ATTTTGGTTAAGATATGTTGCGGCGTGTTTGGCGA-TCGCCGCTAATAC
66 GTTTTGGTTAAGATATGTTGCGGCG-CTTTGACGACGCGCCGCTAATAC
* * * * * * *
26415654 T-TTCTTTAGCGGTGTTTTCCTATAATCGACACTAATTCTAATATACATCT-AGACCAAAACACT
1 TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCT-TAAGACC-AAACTCT
* * *
26415717 GCGTTTTGGTTAAGAGATTTTGCGACGCT
64 GCGTTTTGGTTAAGATATGTTGCGGCGCT
26415746 AATGATGTTC
Statistics
Matches: 475, Mismatches: 67, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
112 58 0.12
113 109 0.23
114 305 0.64
115 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (113 bp):
TATGCTTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTTAAGACCAAACTCTGC
GTTTTGGTTAAGATATGTTGCGGCGCTTTGACGACGCGCCGCTAATAC
Found at i:26415845 original size:40 final size:40
Alignment explanation
Indices: 26415798--26415890 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
26415788 ATGTCTGACT
* *
26415798 TTTAGCGGCGTTTTTTGAGGAT-CGCCGCTAATGCTAGATC
1 TTTAGCGGCGTTTTATG-CGATGCGCCGCTAATGCTAGATC
** * *
26415838 TTTAGCGGCGTTTTATGCTTTGCGCCGCTAATGCTTGATT
1 TTTAGCGGCGTTTTATGCGATGCGCCGCTAATGCTAGATC
26415878 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
26415891 GTCATCCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.98
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.40
Consensus pattern (40 bp):
TTTAGCGGCGTTTTATGCGATGCGCCGCTAATGCTAGATC
Found at i:26416160 original size:5 final size:5
Alignment explanation
Indices: 26416150--26416181 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
26416140 AAACTAAGTG
26416150 AAATA AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA AA
26416182 GCATTTGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:26416722 original size:31 final size:31
Alignment explanation
Indices: 26416686--26416746 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
26416676 GATTTCTATC
26416686 GGTAAGTGACATGCTTTACCAAAAACTAATT
1 GGTAAGTGACATGCTTTACCAAAAACTAATT
26416717 GGTAAGTGACATGCTTTACCAAAAACTAAT
1 GGTAAGTGACATGCTTTACCAAAAACTAAT
26416747 CAGTAAAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (31 bp):
GGTAAGTGACATGCTTTACCAAAAACTAATT
Found at i:26425385 original size:70 final size:70
Alignment explanation
Indices: 26425272--26425411 Score: 253
Period size: 70 Copynumber: 2.0 Consensus size: 70
26425262 AAAACAAGGC
*
26425272 CGAACCAACTTGTTCTTTTTCTTTATTTTTCTTTTGTATTTTCGACAAAGATGATGAACTTTTTG
1 CGAACCAACTTGTTCTTTTTCTTTATTTTTCTTTTGTATTTTCGACAAAGATAATGAACTTTTTG
26425337 CATGT
66 CATGT
* *
26425342 CGAACCAACTTGTTCTTTTTCTTTATTTTTCTTTTGTATTTTCGGCAAAGATAATGAACTTTTTT
1 CGAACCAACTTGTTCTTTTTCTTTATTTTTCTTTTGTATTTTCGACAAAGATAATGAACTTTTTG
26425407 CATGT
66 CATGT
26425412 TTTATGTTTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (70 bp):
CGAACCAACTTGTTCTTTTTCTTTATTTTTCTTTTGTATTTTCGACAAAGATAATGAACTTTTTG
CATGT
Found at i:26439035 original size:11 final size:11
Alignment explanation
Indices: 26439019--26439043 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26439009 GATTTTCTGA
26439019 TTTTCACTCAT
1 TTTTCACTCAT
26439030 TTTTCACTCAT
1 TTTTCACTCAT
26439041 TTT
1 TTT
26439044 GCTCCCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTCACTCAT
Found at i:26441522 original size:13 final size:12
Alignment explanation
Indices: 26441510--26441539 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26441500 GCCCGGCCCG
26441510 GCCCGACGACCC
1 GCCCGACGACCC
*
26441522 GCCCAACGACCC
1 GCCCGACGACCC
26441534 GCCCGA
1 GCCCGA
26441540 AATATGGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.20, C:0.57, G:0.23, T:0.00
Consensus pattern (12 bp):
GCCCGACGACCC
Found at i:26441833 original size:9 final size:9
Alignment explanation
Indices: 26441819--26441846 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26441809 TTTTGTTACA
26441819 ACAATTAAT
1 ACAATTAAT
26441828 ACAATTAAT
1 ACAATTAAT
26441837 ACAATTAAT
1 ACAATTAAT
26441846 A
1 A
26441847 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:26441867 original size:68 final size:68
Alignment explanation
Indices: 26441789--26441998 Score: 379
Period size: 68 Copynumber: 3.1 Consensus size: 68
26441779 TCAAGTTTGT
* *
26441789 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATTAATACAATTAATAATTTGAT
26441854 AAA
66 AAA
26441857 TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATTAATACAATTAATAATTTGAT
26441922 AAA
66 AAA
26441925 TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATTAATACAATTAATAATTTGAT
*
26441988 AAT
66 AAA
26441991 TTTACTAA
1 TTTACTAA
26441999 CAATTAATTT
Statistics
Matches: 139, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
66 27 0.19
67 1 0.01
68 111 0.80
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAAAAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:26441901 original size:9 final size:9
Alignment explanation
Indices: 26441889--26441914 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26441879 TTATTACAAA
26441889 AATTAATAC
1 AATTAATAC
26441898 AATTAATAC
1 AATTAATAC
26441907 AATTAATA
1 AATTAATA
26441915 ATTTGATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTAATAC
Found at i:26442008 original size:16 final size:16
Alignment explanation
Indices: 26441987--26442028 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
26441977 AATAATTTGA
*
26441987 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
26442003 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
26442019 TAGTTTTAAT
1 TAATTTTAAT
26442029 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:26442012 original size:22 final size:23
Alignment explanation
Indices: 26442002--26442063 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
26441992 TTACTAACAA
* * *
26442002 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
26442024 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
26442047 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
26442064 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:26447582 original size:14 final size:14
Alignment explanation
Indices: 26447560--26447594 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26447550 TATTTACTAT
* *
26447560 GTATGGTCATTTTA
1 GTATAGTCATTCTA
26447574 GTATAGTCATTCTA
1 GTATAGTCATTCTA
26447588 GTATAGT
1 GTATAGT
26447595 TAAAACTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.46
Consensus pattern (14 bp):
GTATAGTCATTCTA
Found at i:26453445 original size:10 final size:10
Alignment explanation
Indices: 26453430--26453474 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
26453420 TATACAAGTA
*
26453430 AATTTAACTC
1 AATTTAATTC
*
26453440 AATTTAATAC
1 AATTTAATTC
26453450 AATTTATATTC
1 AATTTA-ATTC
*
26453461 AATTCAATTC
1 AATTTAATTC
26453471 AATT
1 AATT
26453475 CACATCTTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (10 bp):
AATTTAATTC
Found at i:26453464 original size:21 final size:20
Alignment explanation
Indices: 26453430--26453474 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
26453420 TATACAAGTA
*
26453430 AATTTAACTCAATTTAATAC
1 AATTTAACTCAATTCAATAC
* *
26453450 AATTTATATTCAATTCAATTC
1 AATTTA-ACTCAATTCAATAC
26453471 AATT
1 AATT
26453475 CACATCTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTAACTCAATTCAATAC
Found at i:26463390 original size:26 final size:26
Alignment explanation
Indices: 26463350--26463400 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26463340 TAGGTTGAGT
26463350 CATGTAAATGGTCTCATCAAGATAGC
1 CATGTAAATGGTCTCATCAAGATAGC
*
26463376 CATGTAAATGTTCTCATCAAGATAG
1 CATGTAAATGGTCTCATCAAGATAG
26463401 TCATTCGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
CATGTAAATGGTCTCATCAAGATAGC
Found at i:26466669 original size:21 final size:21
Alignment explanation
Indices: 26466639--26466698 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 21
26466629 TATAACTAAG
*
26466639 AATAGAAAATAATAGATAATA
1 AATAGTAAATAATAGATAATA
*
26466660 AATAGTAAATAA-AGAGAATA
1 AATAGTAAATAATAGATAATA
*
26466680 AA-A-TAACTAATA-ATAATA
1 AATAGTAAATAATAGATAATA
26466698 A
1 A
26466699 TAAACAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
18 12 0.35
19 2 0.06
20 9 0.26
21 11 0.32
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (21 bp):
AATAGTAAATAATAGATAATA
Found at i:26468406 original size:16 final size:16
Alignment explanation
Indices: 26468385--26468422 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
26468375 TTATTGAATG
26468385 TCACAAGTGAATTAAT
1 TCACAAGTGAATTAAT
26468401 TCACAAGTGAATTAAT
1 TCACAAGTGAATTAAT
26468417 TCACAA
1 TCACAA
26468423 ACGAATTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.29
Consensus pattern (16 bp):
TCACAAGTGAATTAAT
Found at i:26468428 original size:16 final size:16
Alignment explanation
Indices: 26468393--26468429 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26468383 TGTCACAAGT
**
26468393 GAATTAATTCACAAGT
1 GAATTAATTCACAAAC
26468409 GAATTAATTCACAAAC
1 GAATTAATTCACAAAC
26468425 GAATT
1 GAATT
26468430 CAAAACTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (16 bp):
GAATTAATTCACAAAC
Found at i:26472234 original size:47 final size:47
Alignment explanation
Indices: 26472121--26472503 Score: 640
Period size: 47 Copynumber: 8.1 Consensus size: 47
26472111 GAAAGTGTAT
* *
26472121 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
26472170 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
26472217 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26472264 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
26472311 ATAAGGCCTACTGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26472358 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26472405 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * * *
26472452 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26472499 ATAAG
1 ATAAG
26472504 TCCCGAAGGG
Statistics
Matches: 318, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 283 0.89
49 35 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:26472301 original size:94 final size:94
Alignment explanation
Indices: 26472054--26472503 Score: 707
Period size: 94 Copynumber: 4.8 Consensus size: 94
26472044 GTATATTTGA
26472054 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
26472118 ---TA--T-ATAAGGCCGAATGGCCAATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
26472143 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
26472208 ATATATGTGATAAGGCCTAATAGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCGATGTG
26472239 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
26472304 ATATGTGATAAGGCCTACTGGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
26472333 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
26472398 ATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * * *
26472427 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
26472492 AAATGTGATAAG
66 ATATGTGATAAG
26472504 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 14, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
89 64 0.19
93 2 0.01
94 239 0.70
95 1 0.00
96 34 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:26472353 original size:141 final size:141
Alignment explanation
Indices: 26472054--26472503 Score: 707
Period size: 141 Copynumber: 3.2 Consensus size: 141
26472044 GTATATTTGA
26472054 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
26472118 ---TA--T-ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
64 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
26472177 CTAATGGCCGATGTG
127 CTAATGGCCGATGTG
*
26472192 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
26472257 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAC
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
26472322 TGGCCGATGTG
131 TGGCCGATGTG
26472333 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
26472398 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
26472463 TGGCCAACGTG
131 TGGCCGATGTG
* *
26472474 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
26472504 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 13, Indels: 11
0.92 0.04 0.03
Matches are distributed among these distances:
136 46 0.16
138 15 0.05
140 2 0.01
141 193 0.66
142 1 0.00
143 35 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTG
Found at i:26472672 original size:37 final size:37
Alignment explanation
Indices: 26472622--26472766 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
26472612 CCGAGCTCTA
* *
26472622 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
26472659 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
26472696 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
26472733 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
26472767 AGCTAAAGGT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:26474243 original size:120 final size:119
Alignment explanation
Indices: 26474030--26474354 Score: 479
Period size: 120 Copynumber: 2.7 Consensus size: 119
26474020 GAGAATTGAG
* *
26474030 AGTGATATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
1 AGTGATATATCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
* *
26474095 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
65 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
* *
26474150 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTGGTGCTAGTGATATATCCGGGCTAAATCCCA
1 AGTGATATATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
* *
26474215 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
65 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
* * * ** *
26474270 AGTGATATATCTGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCG-GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCA
* *
26474335 AAGAGCAATCATGCTGGTGA
65 AAGAGCATTCATGCTAGTGA
26474355 CGTGTATTCG
Statistics
Matches: 185, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
119 2 0.01
120 182 0.98
121 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
AGTGATATATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAA
AGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
Found at i:26474353 original size:40 final size:40
Alignment explanation
Indices: 26474030--26474341 Score: 435
Period size: 40 Copynumber: 7.8 Consensus size: 40
26474020 GAGAATTGAG
*
26474030 AGTGATATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26474070 AGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
26474110 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
26474150 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTGGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
26474190 AGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
26474230 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
26474270 AGTGATATATCTGTGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
26474310 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
26474342 ATCATGCTGG
Statistics
Matches: 240, Mismatches: 32, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 240 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:26478463 original size:47 final size:47
Alignment explanation
Indices: 26478350--26478685 Score: 609
Period size: 47 Copynumber: 7.1 Consensus size: 47
26478340 GAAATTGTAT
* *
26478350 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
26478399 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
26478446 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26478493 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
26478540 ATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
26478587 ATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26478634 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
26478681 ATAAG
1 ATAAG
26478686 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 246 0.88
49 35 0.12
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:26478521 original size:94 final size:94
Alignment explanation
Indices: 26478283--26478685 Score: 667
Period size: 94 Copynumber: 4.3 Consensus size: 94
26478273 GTATATTTGA
26478283 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA---T
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
26478345 -TGTA--T-ATAAGGCCGAATGGCCAATGTG
64 ATATATGTGATAAGGCCTAATGGCCAATGTG
26478372 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
26478437 ATATATGTGATAAGGCCTAATAGCCGATGTG
64 ATATATGTGATAAGGCCTAATGGCCAATGTG
26478468 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
26478533 ATATGTGATAAGGCCTAATGGCCAATGTG
66 ATATGTGATAAGGCCTAATGGCCAATGTG
*
26478562 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
26478627 ATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATGTGATAAGGCCTAATGGCCAATGTG
26478656 ATGAATGTGAAAGTGTATATATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
26478686 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 8, Indels: 9
0.95 0.03 0.03
Matches are distributed among these distances:
89 61 0.20
92 1 0.00
93 3 0.01
94 199 0.67
95 1 0.00
96 34 0.11
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (94 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:26478563 original size:22 final size:22
Alignment explanation
Indices: 26478535--26478610 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
26478525 AAGTGTATAT
26478535 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
26478557 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
26478581 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
26478604 ATGTGAT
1 ATGTGAT
26478611 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:26478581 original size:141 final size:141
Alignment explanation
Indices: 26478283--26478685 Score: 667
Period size: 141 Copynumber: 2.9 Consensus size: 141
26478273 GTATATTTGA
26478283 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA---T
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
26478345 -TGTA--T-ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
64 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
26478406 CTAATGGCCGATGTG
127 CTAATGGCCAATGTG
*
26478421 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
26478486 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
26478551 TGGCCAATGTG
131 TGGCCAATGTG
*
26478562 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
26478627 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26478686 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 7, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
136 43 0.17
138 15 0.06
139 1 0.00
140 3 0.01
141 153 0.61
142 1 0.00
143 35 0.14
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (141 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCAATGTG
Found at i:26478854 original size:37 final size:37
Alignment explanation
Indices: 26478804--26478948 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
26478794 CCGAGCTCTA
* *
26478804 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
26478841 AAGACCCGTTGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
26478878 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * * *
26478915 AATACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
26478949 AGCTAAAGGT
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:26483010 original size:22 final size:22
Alignment explanation
Indices: 26482975--26483042 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
26482965 TTCACAAAAA
* * *
26482975 AATTCCTTTTAAAAATTCTCTT
1 AATTCCCTTCAAAAATTCTCTC
*
26482997 AATTCCCTTCAAAATTTCTCTC
1 AATTCCCTTCAAAAATTCTCTC
* *
26483019 AATTTCCTTCCAAAATTCTCTC
1 AATTCCCTTCAAAAATTCTCTC
26483041 AA
1 AA
26483043 ACTCTCAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTCCCTTCAAAAATTCTCTC
Found at i:26483048 original size:30 final size:30
Alignment explanation
Indices: 26483014--26483072 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
26483004 TTCAAAATTT
* *
26483014 CTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
*
26483044 CTCTCAAATTCCTTCTAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
26483073 TTTCCTTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.36
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:26483069 original size:22 final size:22
Alignment explanation
Indices: 26483044--26483085 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26483034 TTCTCTCAAA
*
26483044 CTCTCAAATTCCTTCTAAAATC
1 CTCTCAAATTCCTTCAAAAATC
*
26483066 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCAAAAA
26483086 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAATC
Found at i:26483176 original size:29 final size:30
Alignment explanation
Indices: 26483127--26483184 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
26483117 ATTAAATTTC
26483127 ATTTTTTTTAAGAAAAATTTAAAATTTTTT
1 ATTTTTTTTAAGAAAAATTTAAAATTTTTT
* *
26483157 ATTTTTTTTAA-ATAATTTTAAAATTTTT
1 ATTTTTTTTAAGAAAAATTTAAAATTTTT
26483185 AATATTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTTTTTAAGAAAAATTTAAAATTTTTT
Found at i:26483192 original size:29 final size:30
Alignment explanation
Indices: 26483130--26483192 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
26483120 AAATTTCATT
* *
26483130 TTTTTTAAGAAAAATTTAAAATTTTTTATT
1 TTTTTTAAGAAAAATTTAAAATTTTTAATA
* *
26483160 TTTTTTAA-ATAATTTTAAAATTTTTAATA
1 TTTTTTAAGAAAAATTTAAAATTTTTAATA
26483189 TTTT
1 TTTT
26483193 CAACAATGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 21 0.72
30 8 0.28
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TTTTTTAAGAAAAATTTAAAATTTTTAATA
Found at i:26484969 original size:18 final size:18
Alignment explanation
Indices: 26484936--26484970 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26484926 AGGTATGTTT
* *
26484936 CCTAACCCTTATATGTAC
1 CCTAACCCGTACATGTAC
26484954 CCTAACCCGTACATGTA
1 CCTAACCCGTACATGTA
26484971 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (18 bp):
CCTAACCCGTACATGTAC
Found at i:26485487 original size:23 final size:24
Alignment explanation
Indices: 26485453--26485527 Score: 91
Period size: 23 Copynumber: 3.2 Consensus size: 24
26485443 ACATTATTTG
*
26485453 ATTAAAATCCCTAACCCT-ACTTA
1 ATTAAAAACCCTAACCCTAACTTA
*
26485476 ATTAAAAACCCTAA-CCTAATTTA
1 ATTAAAAACCCTAACCCTAACTTA
* * *
26485499 ATTAAAACCCCAAACCCTAACCTA
1 ATTAAAAACCCTAACCCTAACTTA
26485523 ATTAA
1 ATTAA
26485528 TTAAATTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.07
23 29 0.66
24 12 0.27
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (24 bp):
ATTAAAAACCCTAACCCTAACTTA
Found at i:26485535 original size:33 final size:32
Alignment explanation
Indices: 26485492--26486012 Score: 597
Period size: 33 Copynumber: 16.7 Consensus size: 32
26485482 AACCCTAACC
* * *
26485492 TAATTTAATTAAAACCCCAAACCCTAACCTAAT
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
*
26485525 TAATTAAATTAAAAACCCTAACCTAACTTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAA-T
*
26485558 TAAAT-AATTAAAAACCCTAACCCTAACCTAA-
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
* *
26485589 T--TT-AATTAAAAACCCAAACCCAAACCTAAT
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
*
26485619 TAATTAAATTAAAAACCCTAACCTAACTTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAA-T
26485652 TAATTAAATTAAAAACCCTAACCTAACCTAA-
1 TAATTAAATTAAAAACCCTAACCTAACCTAAT
* *
26485683 T--TT-AATTAAAAACCCAAACCCTAACCTATT
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
*
26485713 TAAATAAATTAAAAACCCTAACCTAACCTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAA-T
*
26485746 TAACTAAATTAAAAACCCTAACCTAACCTAA-
1 TAATTAAATTAAAAACCCTAACCTAACCTAAT
26485777 T--TT-AATTAAAAACCCTAACCTAACCTAA-
1 TAATTAAATTAAAAACCCTAACCTAACCTAAT
* *
26485805 T--TT-AATTAAAAACCCAAACCCTAACCTATT
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
26485835 TAATTAAATTAAAAACCCTAACCTAACCTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAA-T
*
26485868 TAACTAAATTAAAAACCCTAACCTAACCTAA-
1 TAATTAAATTAAAAACCCTAACCTAACCTAAT
*
26485899 T--TT-AATTAAAAACTCTAACCTAACCTAA-
1 TAATTAAATTAAAAACCCTAACCTAACCTAAT
* *
26485927 T--TT-AATTAAAAACCCAAACCCTAACCTATT
1 TAATTAAATTAAAAACCCTAA-CCTAACCTAAT
26485957 TAATTAAATTAAAAACCCTAACCTAACCTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAA-T
*
26485990 TAACTAAATTAAAAACCCTAACC
1 TAATTAAATTAAAAACCCTAACC
26486013 CTATTTAATT
Statistics
Matches: 430, Mismatches: 33, Indels: 50
0.84 0.06 0.10
Matches are distributed among these distances:
28 96 0.22
29 56 0.13
30 4 0.01
31 4 0.01
32 66 0.15
33 204 0.47
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (32 bp):
TAATTAAATTAAAAACCCTAACCTAACCTAAT
Found at i:26485629 original size:94 final size:94
Alignment explanation
Indices: 26485485--26486012 Score: 706
Period size: 94 Copynumber: 5.7 Consensus size: 94
26485475 AATTAAAAAC
*
26485485 CCTAACCTAATTTAATTAAAACCCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCTA
1 CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCTA
* *
26485550 ACTTAATTTAAAT-AATTAAAAACCCTAA
66 ACCTAATTTAATTAAATTAAAAACCCTAA
*
26485578 CCCTAACCTAATTTAATTAAAAACCCAAACCCAAACCTAATTAATTAAATTAAAAACCCTAACCT
1 -CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCT
*
26485643 AACTTAATTTAATTAAATTAAAAACCCTAA
65 AACCTAATTTAATTAAATTAAAAACCCTAA
* *
26485673 CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTATTTAAATAAATTAAAAACCCTAACCTA
1 CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCTA
*
26485738 ACCTAATTTAACTAAATTAAAAACCCTAA
66 ACCTAATTTAATTAAATTAAAAACCCTAA
* *
26485767 CCTAACCTAATTTAATTAAAAACCCTAA-CCTAACCTAA-T--TT-AATTAAAAACCCAAACCCT
1 CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAA-CCT
26485827 AACCT-ATTTAATTAAATTAAAAACCCTAA
65 AACCTAATTTAATTAAATTAAAAACCCTAA
* * * *
26485856 CCTAACCTAATTTAACTAAATTAA---AAACCCTAACCTAACCTAATTTAATTAAAAACTCTAAC
1 CCTAACCTAATTTAATTAAA--AACCCAAACCCTAACCTAA-TTAATTAAATTAAAAACCCTAAC
26485918 CTAACCTAATTTAATTAAA--AACCCAAACCCTAA
63 CTAACCTAATTTAATTAAATTAA---AAACCCTAA
** * * *
26485951 CCT-ATTTAATTAAATTAAAAACCCTAA-CCTAACCTAATTTAACTAAATTAAAAACCCTAACC
1 CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAA-TTAATTAAATTAAAAACCCTAACC
26486013 CTATTTAATT
Statistics
Matches: 390, Mismatches: 27, Indels: 34
0.86 0.06 0.08
Matches are distributed among these distances:
88 2 0.01
89 66 0.17
90 9 0.02
91 3 0.01
92 5 0.01
93 19 0.05
94 257 0.66
95 29 0.07
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (94 bp):
CCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCTA
ACCTAATTTAATTAAATTAAAAACCCTAA
Found at i:26485772 original size:23 final size:24
Alignment explanation
Indices: 26485749--26485832 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 24
26485739 CCTAATTTAA
26485749 CTAAATTAAAAACCCTAACCTAAC
1 CTAAATTAAAAACCCTAACCTAAC
26485773 CTAATTTAATTAAAAACCCTAACCTAAC
1 CT-A---AATTAAAAACCCTAACCTAAC
*
26485801 CTAATTTAATTAAAAACCCAAACCCTAAC
1 CT-A---AATTAAAAACCCTAA-CCTAAC
26485830 CTA
1 CTA
26485833 TTTAATTAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
24 2 0.04
25 1 0.02
28 43 0.80
29 8 0.15
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (24 bp):
CTAAATTAAAAACCCTAACCTAAC
Found at i:26485807 original size:122 final size:122
Alignment explanation
Indices: 26485510--26486033 Score: 782
Period size: 122 Copynumber: 4.3 Consensus size: 122
26485500 TTAAAACCCC
* * *
26485510 AAACCCTAACCTAA-TTAATTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACC
1 AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAA-TT---TAATTAAAAACC
* * * * *
26485574 CTAACCCTAACC----TAATTTAATTAAAAACCCAAACCCAAACCTAA-TTAATTAAATTAA
62 CAAACCCTAACCTATTTAATTAAATTAAAAACCCTAA-CCTAACCTAATTTAACTAAATTAA
*
26485631 AAACCCTAACCTAACTTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAC
1 AAACCCTAACCTAACCTAA--T--TT-AATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAC
*
26485696 CCAAACCCTAACCTATTTAAATAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
61 CCAAACCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
26485758 AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCAAA
1 AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCAAA
26485823 CCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
66 CCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
*
26485880 AAACCCTAACCTAACCTAATTTAATTAAAAACTCTAACCTAACCTAATTTAATTAAAAACCCAAA
1 AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCAAA
26485945 CCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
66 CCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
26486002 AAACCCTAA-C---CCT-ATTTAATTAAAAACCCTAA
1 AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAA
26486034 TTAAATTGTA
Statistics
Matches: 380, Mismatches: 12, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
117 18 0.05
118 3 0.01
121 15 0.04
122 233 0.61
123 25 0.07
124 1 0.00
125 1 0.00
126 12 0.03
127 72 0.19
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (122 bp):
AAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCAAA
CCCTAACCTATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAACTAAATTAA
Found at i:26485894 original size:23 final size:24
Alignment explanation
Indices: 26485871--26485954 Score: 69
Period size: 28 Copynumber: 3.1 Consensus size: 24
26485861 CCTAATTTAA
26485871 CTAAATTAAAAACCCTAACCTAAC
1 CTAAATTAAAAACCCTAACCTAAC
*
26485895 CTAATTTAATTAAAAACTCTAACCTAAC
1 CT-A---AATTAAAAACCCTAACCTAAC
*
26485923 CTAATTTAATTAAAAACCCAAACCCTAAC
1 CT-A---AATTAAAAACCCTAA-CCTAAC
26485952 CTA
1 CTA
26485955 TTTAATTAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.04
25 1 0.02
28 41 0.79
29 8 0.15
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (24 bp):
CTAAATTAAAAACCCTAACCTAAC
Found at i:26489420 original size:125 final size:125
Alignment explanation
Indices: 26489222--26489454 Score: 353
Period size: 125 Copynumber: 1.9 Consensus size: 125
26489212 GTTTGCTTAG
* *
26489222 AAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGCGAAATCGCGTCCACGAGGGCGCGA
1 AAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGCGAAATCGCGTCCACGAGGCCACGA
* * **
26489287 TTTCACAATTTCTTCTCATATAGCATCCTGGTATCAGCGATTTTATACTATTTCCTCAGA
66 TTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTTTATACTATTTCCTCAGA
*
26489347 AAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTAGCGAAATCGCGTCCACGAGGCCAC
1 AAACGTC-AAAAAAAATTATTTCCT-ACATGACCAACTATAGCGAAATCGCGTCCACGAGGCCAC
* *
26489410 TATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAAGCGATTT
64 GATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTT
26489455 CCCACTATTT
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
125 75 0.77
126 22 0.23
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (125 bp):
AAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGCGAAATCGCGTCCACGAGGCCACGA
TTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCGATTTTATACTATTTCCTCAGA
Found at i:26489462 original size:125 final size:125
Alignment explanation
Indices: 26489199--26489464 Score: 349
Period size: 125 Copynumber: 2.1 Consensus size: 125
26489189 CCACGAGGGC
* * * *
26489199 GCGATTTGACACTGTTTGCTTAG-AAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGC
1 GCGATTTCACACTATTTCCTCAGAAAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGC
* * * * **
26489263 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
* * *
26489323 GCGATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTA
1 GCGATTTCACACTATTTCCTCAGAAAACGTC-AAAAAAAATTATTTCCT-ACATGACCAACTATA
* *
26489386 GCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAA
64 GCGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
*
26489448 GCGATTTCCCACTATTT
1 GCGATTTCACACTATTT
26489465 AACCAGAAAC
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
124 18 0.15
125 82 0.67
126 22 0.18
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (125 bp):
GCGATTTCACACTATTTCCTCAGAAAACGTCAAAAAAAATTATTTCCTACATGACCAACTATAGC
GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
Found at i:26493446 original size:7 final size:7
Alignment explanation
Indices: 26493434--26493463 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
26493424 TAAGTAAATG
26493434 AATGAAT
1 AATGAAT
26493441 AATGAAT
1 AATGAAT
26493448 AATGAAT
1 AATGAAT
26493455 AATGAAT
1 AATGAAT
26493462 AA
1 AA
26493464 AATTGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (7 bp):
AATGAAT
Found at i:26493553 original size:44 final size:44
Alignment explanation
Indices: 26493505--26493590 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
26493495 TGTATGCACA
* * *
26493505 TAAAATTGTGAAAATATGAAAA-ATGTATGTATGTATACATATTT
1 TAAAATTAT-AAAATATAAAAATATGTAAGTATGTATACATATTT
* *
26493549 TAAAATTATTAAATATAAAAATATGTAAGTATGTATATATAT
1 TAAAATTATAAAATATAAAAATATGTAAGTATGTATACATAT
26493591 AGATAAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 10 0.28
44 26 0.72
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (44 bp):
TAAAATTATAAAATATAAAAATATGTAAGTATGTATACATATTT
Found at i:26493922 original size:21 final size:23
Alignment explanation
Indices: 26493881--26493924 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
26493871 CATGTACGTA
26493881 TATGCATATATTATAAAAAAATG
1 TATGCATATATTATAAAAAAATG
*
26493904 TATGTATATA-TA-AAAAAAATG
1 TATGCATATATTATAAAAAAATG
26493925 AAATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (23 bp):
TATGCATATATTATAAAAAAATG
Found at i:26493931 original size:20 final size:21
Alignment explanation
Indices: 26493886--26493931 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
26493876 ACGTATATGC
*
26493886 ATATATTATAAAAAAATGTAT
1 ATATATTATAAAAAAATGTAA
*
26493907 GTATA-TATAAAAAAAATG-AA
1 ATATATTAT-AAAAAAATGTAA
26493927 ATATA
1 ATATA
26493932 AAAATAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
ATATATTATAAAAAAATGTAA
Found at i:26495317 original size:133 final size:133
Alignment explanation
Indices: 26495079--26495344 Score: 523
Period size: 133 Copynumber: 2.0 Consensus size: 133
26495069 CTAGGTGCAG
26495079 CGCACCTAGGGTTTTTTTGCTGATTGGTCTTTGGGTTAGTTTAAGTCGTTGGGTCAGGGTGTTTG
1 CGCACCTAGGGTTTTTTTGCTGATTGGTCTTTGGGTTAGTTTAAGTCGTTGGGTCAGGGTGTTTG
26495144 GGCTTGTAATTGGGTCTTTTGGGTATGTTTTAGGGTATTGGGTTTGATCTTTCTAGGCTGGGTGT
66 GGCTTGTAATTGGGTCTTTTGGGTATGTTTTAGGGTATTGGGTTTGATCTTTCTAGGCTGGGTGT
26495209 AGT
131 AGT
*
26495212 CGCACCTAGGTTTTTTTTGCTGATTGGTCTTTGGGTTAGTTTAAGTCGTTGGGTCAGGGTGTTTG
1 CGCACCTAGGGTTTTTTTGCTGATTGGTCTTTGGGTTAGTTTAAGTCGTTGGGTCAGGGTGTTTG
26495277 GGCTTGTAATTGGGTCTTTTGGGTATGTTTTAGGGTATTGGGTTTGATCTTTCTAGGCTGGGTGT
66 GGCTTGTAATTGGGTCTTTTGGGTATGTTTTAGGGTATTGGGTTTGATCTTTCTAGGCTGGGTGT
26495342 AGT
131 AGT
26495345 TTTGTTAGTT
Statistics
Matches: 132, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.11, C:0.10, G:0.34, T:0.45
Consensus pattern (133 bp):
CGCACCTAGGGTTTTTTTGCTGATTGGTCTTTGGGTTAGTTTAAGTCGTTGGGTCAGGGTGTTTG
GGCTTGTAATTGGGTCTTTTGGGTATGTTTTAGGGTATTGGGTTTGATCTTTCTAGGCTGGGTGT
AGT
Found at i:26495372 original size:7 final size:7
Alignment explanation
Indices: 26495360--26495388 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
26495350 TAGTTGGGTC
26495360 TTTTGGG
1 TTTTGGG
26495367 TTTTGGG
1 TTTTGGG
26495374 TTTTGGG
1 TTTTGGG
26495381 TTTTGGG
1 TTTTGGG
26495388 T
1 T
26495389 AGGTTTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.41, T:0.59
Consensus pattern (7 bp):
TTTTGGG
Found at i:26509260 original size:22 final size:23
Alignment explanation
Indices: 26509230--26509305 Score: 104
Period size: 22 Copynumber: 3.4 Consensus size: 23
26509220 AACTAATCCC
26509230 CTCTCAAATTTCCTCTCAATTTT
1 CTCTCAAATTTCCTCTCAATTTT
*
26509253 CTCT-AAATTTCCTCTCAATTTG
1 CTCTCAAATTTCCTCTCAATTTT
*
26509275 CTCTCAAA-TTCCT-TCCAAATTT
1 CTCTCAAATTTCCTCT-CAATTTT
26509297 CTCTCAAAT
1 CTCTCAAAT
26509306 CCATATTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
21 1 0.02
22 39 0.83
23 7 0.15
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.43
Consensus pattern (23 bp):
CTCTCAAATTTCCTCTCAATTTT
Found at i:26509267 original size:34 final size:35
Alignment explanation
Indices: 26509229--26509305 Score: 97
Period size: 33 Copynumber: 2.3 Consensus size: 35
26509219 AAACTAATCC
* * *
26509229 CCTCTCAAATTTCCTCTCAATTTTC-TCTAAATTT
1 CCTCTCAAATTTCCTCTCAAATTCCTTCCAAATTT
*
26509263 CCTCTC-AATTTGCTCTCAAATTCCTTCCAAATTT
1 CCTCTCAAATTTCCTCTCAAATTCCTTCCAAATTT
26509297 -CTCTCAAAT
1 CCTCTCAAAT
26509306 CCATATTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.25, C:0.31, G:0.01, T:0.43
Consensus pattern (35 bp):
CCTCTCAAATTTCCTCTCAAATTCCTTCCAAATTT
Found at i:26509304 original size:11 final size:12
Alignment explanation
Indices: 26509229--26509305 Score: 85
Period size: 11 Copynumber: 6.8 Consensus size: 12
26509219 AAACTAATCC
26509229 CCTCTCAAATTT
1 CCTCTCAAATTT
26509241 CCTCTC-AATTT
1 CCTCTCAAATTT
*
26509252 TCTCT-AAATTT
1 CCTCTCAAATTT
26509263 CCTCTC-AATTT
1 CCTCTCAAATTT
*
26509274 GCTCTCAAA-TT
1 CCTCTCAAATTT
26509285 CCT-TCCAAATTT
1 CCTCT-CAAATTT
26509297 -CTCTCAAAT
1 CCTCTCAAAT
26509306 CCATATTTAA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
10 1 0.02
11 43 0.78
12 11 0.20
ACGTcount: A:0.25, C:0.31, G:0.01, T:0.43
Consensus pattern (12 bp):
CCTCTCAAATTT
Found at i:26509323 original size:51 final size:51
Alignment explanation
Indices: 26509265--26509364 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
26509255 CTAAATTTCC
26509265 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
26509316 TCTCAATTTGCTCTCAAGTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTT
26509365 TTAAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.03, T:0.44
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:26509902 original size:124 final size:126
Alignment explanation
Indices: 26509656--26509913 Score: 412
Period size: 124 Copynumber: 2.1 Consensus size: 126
26509646 TAGAGAACTA
*
26509656 CCTGCTTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGG
1 CCTGCTTGAAGCG-TTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATATCTTCCAGG
* * * *
26509721 ACCTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCAT
65 ACCTACTGTAGCAAAAGCGCGTACACGAGGGCACGACTTCACAAATCCTTCTCATAAAGCAT
*
26509783 CCTGCTTGAAGCG-TTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATAT-TTCCAGGA
1 CCTGCTTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATATCTTCCAGGA
* * *
26509846 CCTACTGTAGCAAAAGCGCGTACACGTGGGCACGACTTCAGAAATCCTTCTGATAAAGCAT
66 CCTACTGTAGCAAAAGCGCGTACACGAGGGCACGACTTCACAAATCCTTCTCATAAAGCAT
26509907 CCTGCTT
1 CCTGCTT
26509914 TGATTTTATC
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
124 69 0.57
125 40 0.33
127 13 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (126 bp):
CCTGCTTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATATCTTCCAGGA
CCTACTGTAGCAAAAGCGCGTACACGAGGGCACGACTTCACAAATCCTTCTCATAAAGCAT
Found at i:26512554 original size:64 final size:64
Alignment explanation
Indices: 26512478--26512601 Score: 178
Period size: 64 Copynumber: 1.9 Consensus size: 64
26512468 CAAACTATTT
* *
26512478 ATTTATTTATTTTTTAATAAAATGTAAATAAGTATG-TTATTGATGTAAAAATACAATACAAATA
1 ATTTATTCATTTTTTAATAAAATGTAAATAAGTA-GATTATTGATGTAAAAAGACAATACAAATA
** * *
26512542 ATTTATTCATTTTTTGGTCAAATGTAAATAAGTAGATTATTGATGTAACAAGACAATACA
1 ATTTATTCATTTTTTAATAAAATGTAAATAAGTAGATTATTGATGTAAAAAGACAATACA
26512602 TTTTTTGTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 1 0.02
64 52 0.98
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (64 bp):
ATTTATTCATTTTTTAATAAAATGTAAATAAGTAGATTATTGATGTAAAAAGACAATACAAATA
Found at i:26515856 original size:23 final size:23
Alignment explanation
Indices: 26515825--26515875 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
26515815 ACCTACTTTC
*
26515825 TTACTGTAGTAATTTTCGAGG-TA
1 TTACAGTAGTAATTTTCG-GGATA
26515848 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26515871 TTACA
1 TTACA
26515876 AAAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 2 0.08
23 24 0.92
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26516930 original size:9 final size:9
Alignment explanation
Indices: 26516916--26517017 Score: 161
Period size: 9 Copynumber: 11.4 Consensus size: 9
26516906 TGGTTAAAAA
26516916 TTAACCGAT
1 TTAACCGAT
*
26516925 TTAACCTAT
1 TTAACCGAT
26516934 TTAACCGA-
1 TTAACCGAT
*
26516942 TTAACCGAC
1 TTAACCGAT
26516951 TTAACCGAT
1 TTAACCGAT
26516960 TTAACCGAT
1 TTAACCGAT
26516969 TTAACCGAT
1 TTAACCGAT
26516978 TTAACCGAT
1 TTAACCGAT
26516987 TTAACCGAT
1 TTAACCGAT
* *
26516996 TTAACCAAC
1 TTAACCGAT
26517005 TTAACCGAT
1 TTAACCGAT
26517014 TTAA
1 TTAA
26517018 ATCACTATAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
8 8 0.09
9 77 0.91
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (9 bp):
TTAACCGAT
Found at i:26517071 original size:36 final size:37
Alignment explanation
Indices: 26517017--26517125 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
26517007 AACCGATTTA
*
26517017 AATCACTATATAATTAAAAA-ATTACATAAGTCTTTG
1 AATCACTAAATAATTAAAAACATTACATAAGTCTTTG
* * * *
26517053 AATCACTACATAACTAAAAACATTACATAAATTTTTG
1 AATCACTAAATAATTAAAAACATTACATAAGTCTTTG
26517090 AATCACTAAATAATTAAAAACATTACATAAGTCTTT
1 AATCACTAAATAATTAAAAACATTACATAAGTCTTT
26517126 TAACACATAA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
36 18 0.28
37 46 0.72
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.34
Consensus pattern (37 bp):
AATCACTAAATAATTAAAAACATTACATAAGTCTTTG
Found at i:26517381 original size:7 final size:7
Alignment explanation
Indices: 26517369--26517427 Score: 73
Period size: 7 Copynumber: 8.3 Consensus size: 7
26517359 GTACAGAAGA
26517369 AAACATG
1 AAACATG
26517376 AAACATG
1 AAACATG
* **
26517383 CAGTATG
1 AAACATG
26517390 AAACATG
1 AAACATG
*
26517397 AAATCGTG
1 AAA-CATG
26517405 AAACATG
1 AAACATG
26517412 AAACATG
1 AAACATG
26517419 AAACATG
1 AAACATG
26517426 AA
1 AA
26517428 TTGTTCTTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.17
Consensus pattern (7 bp):
AAACATG
Found at i:26517448 original size:29 final size:29
Alignment explanation
Indices: 26517416--26517473 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26517406 AACATGAAAC
26517416 ATGAAACATGAATTGTTCTTGGGCTTAGT
1 ATGAAACATGAATTGTTCTTGGGCTTAGT
26517445 ATGAAACATGAATTGTTCTTGGGCTTAGT
1 ATGAAACATGAATTGTTCTTGGGCTTAGT
26517474 TCTTGGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (29 bp):
ATGAAACATGAATTGTTCTTGGGCTTAGT
Found at i:26517477 original size:13 final size:13
Alignment explanation
Indices: 26517459--26517485 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26517449 AACATGAATT
26517459 GTTCTTGGGCTTA
1 GTTCTTGGGCTTA
26517472 GTTCTTGGGCTTA
1 GTTCTTGGGCTTA
26517485 G
1 G
26517486 AGCCTGGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.33, T:0.44
Consensus pattern (13 bp):
GTTCTTGGGCTTA
Found at i:26517709 original size:18 final size:19
Alignment explanation
Indices: 26517688--26517724 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
26517678 CCGAATCCGG
26517688 TCGG-TTAACCGAATTTTT
1 TCGGTTTAACCGAATTTTT
26517706 TCGGTTTTAACCGAATTTT
1 TCGG-TTTAACCGAATTTT
26517725 GCACACCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
20 13 0.76
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.46
Consensus pattern (19 bp):
TCGGTTTAACCGAATTTTT
Found at i:26523413 original size:99 final size:98
Alignment explanation
Indices: 26523286--26523469 Score: 323
Period size: 99 Copynumber: 1.9 Consensus size: 98
26523276 CCTTTACAGG
*
26523286 GCACATTAAAGAAAATGATAACCTATCTTCTCGCTTTTATATTTGATAACATATAAATTTAAGGG
1 GCACATTAAAGAAAATGATAACCTATCTTCTCGCTTTTATATTTGATAACATATAAATTTAAAGG
26523351 GGTAAAAAGAAAATGGCATTTTCTTTAAAGGCGA
66 GGT-AAAAGAAAATGGCATTTTCTTTAAAGGCGA
* * *
26523385 GCACTTTAAAGAAAATGATAACTTATCTTCTCTCTTTTATATTTGATAACATATAAATTTAAAGG
1 GCACATTAAAGAAAATGATAACCTATCTTCTCGCTTTTATATTTGATAACATATAAATTTAAAGG
26523450 GGTAAAAGAAAATGGCATTT
66 GGTAAAAGAAAATGGCATTT
26523470 GCATTTGCCA
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 17 0.21
99 64 0.79
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (98 bp):
GCACATTAAAGAAAATGATAACCTATCTTCTCGCTTTTATATTTGATAACATATAAATTTAAAGG
GGTAAAAGAAAATGGCATTTTCTTTAAAGGCGA
Found at i:26538513 original size:16 final size:17
Alignment explanation
Indices: 26538452--26538516 Score: 69
Period size: 17 Copynumber: 3.7 Consensus size: 17
26538442 TCTTTTAATT
*
26538452 AATAAAACATAAAATAA
1 AATAAAACATAATATAA
**
26538469 AATAAAAGGTTAATATAA
1 AATAAAA-CATAATATAA
26538487 TAATGAAAACATAATA-AA
1 -AAT-AAAACATAATATAA
26538505 AATAAAACATAA
1 AATAAAACATAA
26538517 GTGAATATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 9 0.22
17 10 0.25
18 9 0.22
19 8 0.20
20 4 0.10
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.22
Consensus pattern (17 bp):
AATAAAACATAATATAA
Found at i:26550764 original size:11 final size:11
Alignment explanation
Indices: 26550716--26550771 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
26550706 CTTTCCTTCA
26550716 TTCTCTTTTCT
1 TTCTCTTTTCT
*
26550727 TTTTCTTTT-T
1 TTCTCTTTTCT
*
26550737 TTCTTCTACTTCCT
1 TTC-TCT--TTTCT
26550751 TTCTCTTTTCT
1 TTCTCTTTTCT
*
26550762 TTCTTTTTTC
1 TTCTCTTTTC
26550772 GATTACTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
10 3 0.08
11 24 0.67
13 5 0.14
14 4 0.11
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (11 bp):
TTCTCTTTTCT
Found at i:26550780 original size:28 final size:28
Alignment explanation
Indices: 26550722--26550780 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
26550712 TTCATTCTCT
* *
26550722 TTTCTTTTTCTTTTTTTCTTCTACTTCC
1 TTTCTTTTTCTTTTTTTCTTCGACTTAC
26550750 TTTCTCTTTTCTTTCTTTT-TTCGA-TTAC
1 TTTCT-TTTTCTTT-TTTTCTTCGACTTAC
26550778 TTT
1 TTT
26550781 GGTAACTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 11 0.41
29 12 0.44
30 4 0.15
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (28 bp):
TTTCTTTTTCTTTTTTTCTTCGACTTAC
Found at i:26560475 original size:20 final size:20
Alignment explanation
Indices: 26560450--26560488 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26560440 CAGACGATAG
26560450 AGATTCATTTTGTGTGTTAA
1 AGATTCATTTTGTGTGTTAA
26560470 AGATTCATTTTGTGTGTTA
1 AGATTCATTTTGTGTGTTA
26560489 TCTGTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.21, T:0.51
Consensus pattern (20 bp):
AGATTCATTTTGTGTGTTAA
Found at i:26560605 original size:27 final size:28
Alignment explanation
Indices: 26560544--26560605 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 28
26560534 TTTGATGTCC
*
26560544 TTCTTTTCTTCATTCCCTTTTCTTTTTA
1 TTCTTTTCTACATTCCCTTTTCTTTTTA
*
26560572 TTTTTTTCTAC-TT-CCTTTCTCTTTTCT-
1 TTCTTTTCTACATTCCCTTT-TCTTTT-TA
26560599 TTCTTTT
1 TTCTTTT
26560606 GTCCGATTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 5 0.17
27 14 0.48
28 10 0.34
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (28 bp):
TTCTTTTCTACATTCCCTTTTCTTTTTA
Found at i:26580425 original size:27 final size:27
Alignment explanation
Indices: 26580394--26580571 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26580384 TAAATTTTAC
26580394 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26580421 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26580447 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26580475 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26580503 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
26580530 AGCACTAAGTGTGCGAGTTGATTATAC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26580557 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26580572 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26580562 original size:82 final size:81
Alignment explanation
Indices: 26580391--26580571 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
26580381 GATTAAATTT
* *
26580391 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26580456 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26580472 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26580536 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
26580554 TACAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26580572 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26586087 original size:40 final size:40
Alignment explanation
Indices: 26586043--26586130 Score: 99
Period size: 39 Copynumber: 2.2 Consensus size: 40
26586033 CACGTAAGCA
* * * * *
26586043 CGATTTGCTT-CCACGTCAGCAAATCGTGCTTACGTGGATG
1 CGATTTGCTTGCCACATAAG-AAATCGCGCTGACGTGGACG
*
26586083 CGATTTG-TTGCCACATAAGTAATCGCGCTGACGTGGACG
1 CGATTTGCTTGCCACATAAGAAATCGCGCTGACGTGGACG
26586122 CGATTTGCT
1 CGATTTGCT
26586131 AACACGTCCC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
39 25 0.62
40 15 0.38
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATTTGCTTGCCACATAAGAAATCGCGCTGACGTGGACG
Found at i:26592977 original size:25 final size:23
Alignment explanation
Indices: 26592945--26593005 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 23
26592935 GAACGAGTTT
26592945 TATA-ATAATTTTTATATTTATGTA
1 TATATATAATTTTTATATTT-T-TA
26592969 TATATATAATTTTTATATTTTTA
1 TATATATAATTTTTATATTTTTA
*
26592992 TA-ATAAAATTTTTA
1 TATATATAATTTTTA
26593006 ATAATTGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
22 11 0.31
23 4 0.11
24 5 0.14
25 15 0.43
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TATATATAATTTTTATATTTTTA
Found at i:26594193 original size:18 final size:18
Alignment explanation
Indices: 26594162--26594196 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26594152 CTCACATAAT
* *
26594162 TTTTTTTATTTTTTTTTG
1 TTTTTGTATCTTTTTTTG
26594180 TTTTTGTATCTTTTTTT
1 TTTTTGTATCTTTTTTT
26594197 ATCACTTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.86
Consensus pattern (18 bp):
TTTTTGTATCTTTTTTTG
Found at i:26595342 original size:19 final size:19
Alignment explanation
Indices: 26595318--26595369 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
26595308 AATTTTTAAG
26595318 GATATGCAATCTTGGATAT
1 GATATGCAATCTTGGATAT
26595337 GATATGCAATCTTGGATAT
1 GATATGCAATCTTGGATAT
26595356 GATATGCAATCTTG
1 GATATGCAATCTTG
26595370 AAAGATATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTGGATAT
Found at i:26600667 original size:10 final size:10
Alignment explanation
Indices: 26600652--26600676 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26600642 AAGATGGTGC
26600652 AAAAAAAAGA
1 AAAAAAAAGA
26600662 AAAAAAAAGA
1 AAAAAAAAGA
26600672 AAAAA
1 AAAAA
26600677 CTCTTCCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:26602445 original size:45 final size:45
Alignment explanation
Indices: 26602394--26603605 Score: 414
Period size: 44 Copynumber: 27.5 Consensus size: 45
26602384 GGAGTAGGTT
* *
26602394 GAAGATAGAAGATCTCGCCTTCCTGCATCGACAGCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * *
26602439 GAAGATACCAG-CCTTGCCTCCCT-AAGTTG-TAG-TAGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCA-TCGACAGCGA-AGCAGATC
*
26602482 GAAGATAGCAGATCTTGCCTTTCTGCATCGACAGCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * * *
26602527 GAAGATACCAG-CCTTGCCTCCCTAG-GTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCT-GCATCGACAGCGAAGCAGATC
* * *
26602570 GAAGATAGCAGATATTGCCTTCCTACATCGACAGCGAGGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* ** * ** * * * *
26602615 GAAGATA-CCGGCCTTGCCTCCCTGGGTTGTA-A-TGAAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCG-ACAGCGAAGCAGATC
* * *
26602658 GAAGATAGCAGATCTTGCCTTCCTGAATCGACAGCGAAGTAGCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * * * *
26602703 GAAGATACCAG-CCTTGCCTCCCTAG-GTTG-TAGTGGAGTAGGTT
1 GAAGATAGCAGATCTTGCCTTCCT-GCATCGACAGCGAAGCAGATC
26602746 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * ** * * * * * *
26602791 GAAGATACCAG-CCTTGCCTCCCTGGGT-TATAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * *
26602834 GAAGATAACAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATC-GACAGCGAAGCAGATC
* * * ** * * * * *
26602879 GAAGATACCAG-CCTTGCCTCCCTGGGTC-ATAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * *
26602922 GAAGATAGTAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * ** * * * * * *
26602967 GAAGATACCAG-CCTTGCC-TCCTTGGGTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCC-TGCATCGACAGCGAAGCAGATC
* * *
26603010 GAAGATAGCATATCTTGCCTTCGTGCATCGACAGCGAAGCAGATT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * ** * * * * *
26603055 GAAGATACCAG-CCTTGCCTCCCTGGGTTG-TAGTGGAGCA-AGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGA-TC
* * * * *
26603098 GAAGATAGCAGATCTTGCCTTCCTGTACCAACAGTGAAGCGGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * ** * * * * *
26603143 GAAGATACCAG-CCTTGCCTCCCTGGGTCG-TAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * *
26603186 GAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * * * *
26603231 GAAGATACCAG-CCCTGCCTCCCTAG-GTTG-TAGTGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCT-GCATCGACAGCGAAGCAGATC
* * *
26603274 GAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * ** * * * *
26603319 AAAGATACCAG-CCTTGCC-TCCTTGGGTTGTCA-TGAAGTAGATC
1 GAAGATAGCAGATCTTGCCTTCC-TGCATCGACAGCGAAGCAGATC
* * * * * * *
26603362 GAAGGA-AGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
1 GAA-GATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * * *
26603406 AAAGATAGCAGATTTTGTCTTCATGTATTGGC-GTGAAGTAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* *** *
26603450 GAAGATAGCAGATCTTGTCTTCC--CATACTGGTGGCGAAGTAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCAT-C-GACAGCGAAGCAGATC
* * * * * * * * *
26603495 AAAGAAAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
* * * * * * * *
26603539 AAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
*
26603583 GAAGATAGCAGATCTTGTCTTCC
1 GAAGATAGCAGATCTTGCCTTCC
26603606 ATATTGGTGG
Statistics
Matches: 862, Mismatches: 256, Indels: 99
0.71 0.21 0.08
Matches are distributed among these distances:
42 4 0.00
43 215 0.25
44 402 0.47
45 237 0.27
46 2 0.00
47 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATC
Found at i:26603378 original size:88 final size:88
Alignment explanation
Indices: 26602272--26603348 Score: 1582
Period size: 88 Copynumber: 12.2 Consensus size: 88
26602262 GAAATCACAA
* * * * * * *
26602272 AGCCTTGCCTTCCTGGTTTGCAGCGGAGCAGGTTGAAAATAACAAATCTTGCCTTCCTGTA-CTG
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATC-G
*
26602336 ACGGCGAAGCAGATCGAAGATACC
65 ACAGCGAAGCAGATCGAAGATACC
* * * * * *
26602360 AGCCTTGCCTCACTGGGATGTAGTGGAGTAGGTTGAAGATAGAAGATCTCGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
26602425 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
** * * *
26602448 AGCCTTGCCTCCCTAAGTTGTAGTAGAGCAGGTTGAAGATAGCAGATCTTGCCTTTCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
26602513 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * **
26602536 AGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATATTGCCTTCCTACATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
*
26602601 CAGCGAGGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * * *
26602624 GGCCTTGCCTCCCTGGGTTGTAATGAAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGAATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
* *
26602689 CAGCGAAGTAGCTCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * *
26602712 AGCCTTGCCTCCCTAGGTTGTAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
26602777 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* *
26602800 AGCCTTGCCTCCCTGGGTTATAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGTA-CTG
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATC-G
*
26602864 ACAGTGAAGCAGATCGAAGATACC
65 ACAGCGAAGCAGATCGAAGATACC
** * *
26602888 AGCCTTGCCTCCCTGGGTCATAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
*
26602953 CAGTGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * * *
26602976 AGCCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTTGAAGATAGCATATCTTGCCTTCGTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
*
26603041 CAGCGAAGCAGATTGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * *
26603064 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAAGTTGAAGATAGCAGATCTTGCCTTCCTGTACCAA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
* *
26603129 CAGTGAAGCGGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* *
26603152 AGCCTTGCCTCCCTGGGTCGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
*
26603217 CAGTGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * *
26603240 AGCCCTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
* *
26603305 CAGTGAAGCAGATCAAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
*
26603328 AGCCTTGCCTCCTTGGGTTGT
1 AGCCTTGCCTCCCTGGGTTGT
26603349 CATGAAGTAG
Statistics
Matches: 899, Mismatches: 87, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
87 1 0.00
88 896 1.00
89 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (88 bp):
AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTATCGA
CAGCGAAGCAGATCGAAGATACC
Found at i:26603401 original size:44 final size:44
Alignment explanation
Indices: 26603351--26603734 Score: 433
Period size: 44 Copynumber: 8.8 Consensus size: 44
26603341 TGGGTTGTCA
26603351 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
* *
26603395 TGAAGTAGATC-AAAGATAGCAGATTTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGAAGGA-AGCAGATCTTGTCTTCATGTATTGGCG
*** * *
26603439 TGAAGTAGATCGAA-GATAGCAGATCTTGTCTTCCCATACTGGTGG
1 TGAAGTAGATCGAAGGA-AGCAGATCTTGTCTTCATGTATTGG-CG
* * *
26603484 CGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
*
26603528 TGAAGTAGATC-AAAGATAGCAGATCTTGTCTTCATGTATTGGCG
1 TGAAGTAGATCGAAGGA-AGCAGATCTTGTCTTCATGTATTGGCG
*
26603572 TGAAGTAGATCGAA-GATAGCAGATCTTGTCTTCCA--TATTGGTGG
1 TGAAGTAGATCGAAGGA-AGCAGATCTTGTCTT-CATGTATTGG-CG
* * * *
26603616 CGAAGTAGTTCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC-
1 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
* * * * *
26603659 -GAAGTAGATCGAAGAAAGCAAATATTGTCTTCATGTATCGGCA
1 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
* * *
26603702 TGAAATAGATCAAAGGTAGCAGATCTTGTCTTC
1 TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTC
26603735 CCATACTGGT
Statistics
Matches: 291, Mismatches: 36, Indels: 26
0.82 0.10 0.07
Matches are distributed among these distances:
42 37 0.13
43 15 0.05
44 191 0.66
45 47 0.16
46 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (44 bp):
TGAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCG
Found at i:26603515 original size:133 final size:133
Alignment explanation
Indices: 26603352--26603762 Score: 666
Period size: 133 Copynumber: 3.1 Consensus size: 133
26603342 GGGTTGTCAT
*
26603352 GAAGTAGATCGAAGGAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
*
26603417 ATTTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
66 ATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
26603482 GGC
131 GGC
*
26603485 GAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
* *
26603550 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTT-CCATATTGGT
66 ATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
26603614 GGC
131 GGC
* * * * *
26603617 GAAGTAGTTCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC--GAAGTAGATCGAAGAAAGCAA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
* * * * *
26603680 ATATTGTCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCATACTGGT
66 ATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
26603745 GGC
131 GGC
26603748 GAAGTAGATCGAAGA
1 GAAGTAGATCGAAGA
26603763 TACAAGTCTT
Statistics
Matches: 259, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
130 66 0.25
131 26 0.10
132 51 0.20
133 116 0.45
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (133 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAG
ATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
GGC
Found at i:26603569 original size:177 final size:174
Alignment explanation
Indices: 26603349--26603734 Score: 535
Period size: 177 Copynumber: 2.2 Consensus size: 174
26603339 CTTGGGTTGT
*
26603349 CATGAAGTAGATCGAAGGA-AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATA
1 CATGAAGTAGATC-AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATA
* * *
26603413 GCAGATTTTGTCTT-CATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCAT
65 GCAGATCTTGTCTTCCA--TATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CAT
* * * *
26603476 ACTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGG
126 -CTAGTGGCGAAGTAGATCAAAGAAAGCAAATATTGTCTTCATGTATCGG
* *
26603526 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
1 CATGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAG
* * * * *
26603591 CAGATCTTGTCTTCCATATTGGTGGCGAAGTAGTTCGAAGAAAGTAGATCTTGTCTTCATGTATT
66 CAGATCTTGTCTTCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTAGT
*
26603656 GGCGAAGTAGATCGAAGAAAGCAAATATTGTCTTCATGTATCGG
131 GGCGAAGTAGATCAAAGAAAGCAAATATTGTCTTCATGTATCGG
* *
26603700 CATGAAATAGATCAAAGGTAGCAGATCTTGTCTTC
1 CATGAAGTAGATCAAAGATAGCAGATCTTGTCTTC
26603735 CCATACTGGT
Statistics
Matches: 187, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
174 74 0.40
175 3 0.02
176 10 0.05
177 98 0.52
178 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (174 bp):
CATGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAG
CAGATCTTGTCTTCCATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTAGT
GGCGAAGTAGATCAAAGAAAGCAAATATTGTCTTCATGTATCGG
Found at i:26604181 original size:19 final size:19
Alignment explanation
Indices: 26604107--26604178 Score: 117
Period size: 19 Copynumber: 3.7 Consensus size: 19
26604097 AATCTTCAAG
26604107 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26604126 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
26604145 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
26604166 GATATGCAATCTT
1 GATATGCAATCTT
26604179 GGAATATATG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26614322 original size:6 final size:6
Alignment explanation
Indices: 26614311--26614395 Score: 170
Period size: 6 Copynumber: 14.2 Consensus size: 6
26614301 TTTGTCCTTA
26614311 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
26614359 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT A
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT A
26614396 ATTTTATAAC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 79 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:26615304 original size:25 final size:25
Alignment explanation
Indices: 26615251--26615304 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
26615241 TTTTCTTTTC
** *
26615251 TTTTTCTTTTCATTTTTAATTTAGG
1 TTTTTCTTTTCATTTTTAAAGTAGA
26615276 TTTTCTCTTTTC-TTTTTAAAGTAGA
1 TTTT-TCTTTTCATTTTTAAAGTAGA
26615301 TTTT
1 TTTT
26615305 ATTCTTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.17, C:0.09, G:0.07, T:0.67
Consensus pattern (25 bp):
TTTTTCTTTTCATTTTTAAAGTAGA
Found at i:26615310 original size:26 final size:26
Alignment explanation
Indices: 26615251--26615312 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
26615241 TTTTCTTTTC
** *
26615251 TTTTTCTTTTCATTTTTAATTTAGGT
1 TTTTTCTTTTCATTTTTAAAGTAGAT
*
26615277 TTTCTCTTTTC-TTTTTAAAGTAGAT
1 TTTTTCTTTTCATTTTTAAAGTAGAT
26615302 TTTATTCTTTT
1 TTT-TTCTTTT
26615313 AGTTTCTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 14 0.47
26 16 0.53
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAAAGTAGAT
Found at i:26618194 original size:12 final size:12
Alignment explanation
Indices: 26618177--26618202 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26618167 GTAATGGACA
26618177 TTGGACATTTAT
1 TTGGACATTTAT
26618189 TTGGACATTTAT
1 TTGGACATTTAT
26618201 TT
1 TT
26618203 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:26620542 original size:47 final size:47
Alignment explanation
Indices: 26620464--26620867 Score: 646
Period size: 47 Copynumber: 8.6 Consensus size: 47
26620454 CCCTTCGGGA
* * * * * *
26620464 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26620511 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26620558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26620605 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26620654 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26620701 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26620748 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26620795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26620842 CTTATCACAGATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
26620868 CACAATTATC
Statistics
Matches: 332, Mismatches: 23, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 286 0.86
49 46 0.14
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26620903 original size:143 final size:141
Alignment explanation
Indices: 26620464--26620867 Score: 673
Period size: 143 Copynumber: 2.9 Consensus size: 141
26620454 CCCTTCGGGA
* * * * * *
26620464 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
26620529 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
26620594 GGCCATTAGGC
131 GGCCATTAGGC
* * *
26620605 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
26620670 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26620735 TCGGCCATTAGGC
129 TCGGCCATTAGGC
26620748 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * * *
26620813 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAGATATATACATTCACAT
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACAT
26620868 CACAATTATC
Statistics
Matches: 245, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 113 0.46
143 132 0.54
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:26632267 original size:3 final size:3
Alignment explanation
Indices: 26632199--26632251 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
26632189 CCCCACTGTC
*
26632199 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TGT TAT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
26632246 TAT TAT
1 TAT TAT
26632252 GATTTGTTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26632369 original size:3 final size:3
Alignment explanation
Indices: 26632361--26632427 Score: 77
Period size: 3 Copynumber: 23.0 Consensus size: 3
26632351 TTTTAGTTAG
26632361 TAT TAT TAT TAT TAT T-T TAT TAT TAT TAT TAT T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
26632406 TACT TAG TCT TAT TAC TAT TAT
1 TA-T TAT TAT TAT TAT TAT TAT
26632428 GATGGATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
2 6 0.11
3 45 0.83
4 3 0.06
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:26632383 original size:17 final size:17
Alignment explanation
Indices: 26632361--26632407 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
26632351 TTTTAGTTAG
26632361 TATTATTATTATTATTT
1 TATTATTATTATTATTT
26632378 TATTATTATTATTATTT
1 TATTATTATTATTATTT
26632395 TA-TATTATTATTA
1 TATTATTATTATTA
26632408 CTTAGTCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 11 0.37
17 19 0.63
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTATTATTATTATTT
Found at i:26637835 original size:25 final size:25
Alignment explanation
Indices: 26637801--26637854 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
26637791 TCGATTTCAA
*
26637801 CTCGTATGAGATTACCGGTT-CTCAG
1 CTCGCATGAGATTA-CGGTTACTCAG
* *
26637826 CTCGCATGAGCTTACGGTTATTCAG
1 CTCGCATGAGATTACGGTTACTCAG
26637851 CTCG
1 CTCG
26637855 GAGGTGCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (25 bp):
CTCGCATGAGATTACGGTTACTCAG
Found at i:26641833 original size:18 final size:17
Alignment explanation
Indices: 26641792--26641843 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
26641782 TTTATCTCTT
*
26641792 CAAA-AAAAAAAAAGAAA
1 CAAAGAAAAAAGAA-AAA
*
26641809 GAAAGAAAGAAAGAAAAA
1 CAAAGAAA-AAAGAAAAA
*
26641827 CAAAGAAAAAATAAAAA
1 CAAAGAAAAAAGAAAAA
26641844 AAGAGAGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.38
18 13 0.45
19 5 0.17
ACGTcount: A:0.83, C:0.04, G:0.12, T:0.02
Consensus pattern (17 bp):
CAAAGAAAAAAGAAAAA
Done.