Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69935236
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1740000 characters in sequence are not A, C, G, or T
File 188 of 223
Found at i:59033652 original size:29 final size:30
Alignment explanation
Indices: 59033606--59033663 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
59033596 ATTCAATGTA
59033606 GTACAATGTCATAAATG-AATTTTGATTTT
1 GTACAATGTCATAAATGAAATTTTGATTTT
* * * *
59033635 GTACAATTTTATACATGAAATTTTTATTT
1 GTACAATGTCATAAATGAAATTTTGATTT
59033664 GATTCAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.48
Consensus pattern (30 bp):
GTACAATGTCATAAATGAAATTTTGATTTT
Found at i:59034187 original size:22 final size:22
Alignment explanation
Indices: 59034147--59034217 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
59034137 TTTCTCCAAT
*
59034147 GTTAGGACTTTTTATTTTTTTAGG
1 GTTAGGA-TTTTT-GTTTTTTAGG
59034171 GTTAGGATTTTTGTTTTATTA-G
1 GTTAGGATTTTTGTTTT-TTAGG
*
59034193 GTTAAGG-TTTATAG-TTTTTAGG
1 GTT-AGGATTT-TTGTTTTTTAGG
59034215 GTT
1 GTT
59034218 TAGGGTATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
21 3 0.07
22 18 0.44
23 13 0.32
24 7 0.17
ACGTcount: A:0.18, C:0.01, G:0.24, T:0.56
Consensus pattern (22 bp):
GTTAGGATTTTTGTTTTTTAGG
Found at i:59034187 original size:23 final size:24
Alignment explanation
Indices: 59034147--59034193 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
59034137 TTTCTCCAAT
*
59034147 GTTAGGACTTTTTATTTTTTTAGG
1 GTTAGGACTTTTTATTTTATTAGG
*
59034171 GTTAGGA-TTTTTGTTTTATTAGG
1 GTTAGGACTTTTTATTTTATTAGG
59034194 TTAAGGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.17, C:0.02, G:0.23, T:0.57
Consensus pattern (24 bp):
GTTAGGACTTTTTATTTTATTAGG
Found at i:59036744 original size:9 final size:9
Alignment explanation
Indices: 59036730--59036773 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
59036720 ATAATCAAAA
59036730 TGAGAGAGT
1 TGAGAGAGT
*
59036739 TGAGAGACT
1 TGAGAGAGT
*
59036748 TGAGAGGGTT
1 TGAGAGAG-T
59036758 TGAGAGAGT
1 TGAGAGAGT
*
59036767 TGGGAGA
1 TGAGAGA
59036774 AGCATGTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.30, C:0.02, G:0.45, T:0.23
Consensus pattern (9 bp):
TGAGAGAGT
Found at i:59039800 original size:24 final size:23
Alignment explanation
Indices: 59039773--59039825 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
59039763 CATGATTTTG
59039773 ATTTTAAAAAAATATTTTTTAGTA
1 ATTTTAAAAAAATATTTTTTA-TA
* * * *
59039797 ATTTTTATAAACTTTTTTTTATA
1 ATTTTAAAAAAATATTTTTTATA
59039820 ATTTTA
1 ATTTTA
59039826 TAATTTTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (23 bp):
ATTTTAAAAAAATATTTTTTATA
Found at i:59042607 original size:13 final size:14
Alignment explanation
Indices: 59042589--59042621 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
59042579 GGTGTTGGGC
59042589 TGTTTGGGTT-TTT
1 TGTTTGGGTTATTT
59042602 TGTTTGGGTTATTT
1 TGTTTGGGTTATTT
59042616 T-TTTGG
1 TGTTTGG
59042622 TTTCTGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.03, C:0.00, G:0.30, T:0.67
Consensus pattern (14 bp):
TGTTTGGGTTATTT
Found at i:59042826 original size:28 final size:28
Alignment explanation
Indices: 59042785--59042838 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
59042775 CCTCATTCCC
** * *
59042785 CTCCACTGGGTCTTGTTGCTTTGATCGA
1 CTCCACTGCCTCTTGTCGCTTCGATCGA
59042813 CTCCACTGCCTCTTGTCGCTTCGATC
1 CTCCACTGCCTCTTGTCGCTTCGATC
59042839 CACTTTATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.09, C:0.33, G:0.20, T:0.37
Consensus pattern (28 bp):
CTCCACTGCCTCTTGTCGCTTCGATCGA
Found at i:59048430 original size:18 final size:18
Alignment explanation
Indices: 59048407--59048443 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
59048397 CCAAAGCGGT
59048407 CTTGTTTGTCCATTAATC
1 CTTGTTTGTCCATTAATC
59048425 CTTGTTTGTCCATTAATC
1 CTTGTTTGTCCATTAATC
59048443 C
1 C
59048444 GGGTATCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.24, G:0.11, T:0.49
Consensus pattern (18 bp):
CTTGTTTGTCCATTAATC
Found at i:59055554 original size:29 final size:32
Alignment explanation
Indices: 59055502--59055571 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 32
59055492 ACATATAAGC
*
59055502 ATATGTATTTATGAAAATAAAAAATA-AAA-A
1 ATATGTATATATGAAAATAAAAAATACAAATA
* *
59055532 ATATGTATATAT-AAAGTATAAAATACAAATA
1 ATATGTATATATGAAAATAAAAAATACAAATA
*
59055563 ATATATATA
1 ATATGTATA
59055572 AGCAGGCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.32
30 14 0.41
31 9 0.26
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (32 bp):
ATATGTATATATGAAAATAAAAAATACAAATA
Found at i:59059292 original size:97 final size:96
Alignment explanation
Indices: 59059162--59059414 Score: 434
Period size: 97 Copynumber: 2.6 Consensus size: 96
59059152 ATTTAATTTT
* * *
59059162 AACCCCAATCTAATTTTTTTAAATTTATAATTAATTTACTCAAGTAACCCTAAATCCTAATTTAT
1 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTAT
*
59059227 TTGATTTTTTCCTTAAAAACCCTAAACACTA
66 TTGATTTTTTCCTTAAAAACCATAAACACTA
59059258 AACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTA
1 AACCCTAATCTAATTTTTT-AAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTA
59059323 TTTGATTTTTTCCTTAAAAACCATAAACACTA
65 TTTGATTTTTTCCTTAAAAACCATAAACACTA
* * *
59059355 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTAATTAAGAAACCCTAAACCCTAA
1 AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
59059415 ACCCTTATTT
Statistics
Matches: 149, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
96 56 0.38
97 93 0.62
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.39
Consensus pattern (96 bp):
AACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAATTTAT
TTGATTTTTTCCTTAAAAACCATAAACACTA
Found at i:59063951 original size:21 final size:21
Alignment explanation
Indices: 59063927--59063972 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
59063917 TGGTCAAGCC
** *
59063927 ACCAGAATTTGTAGATATACT
1 ACCAGAAAATGTAGATAAACT
*
59063948 ACCAGAAAATGTAGTTAAACT
1 ACCAGAAAATGTAGATAAACT
59063969 ACCA
1 ACCA
59063973 AAATATGCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (21 bp):
ACCAGAAAATGTAGATAAACT
Found at i:59066283 original size:39 final size:40
Alignment explanation
Indices: 59066226--59066306 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 40
59066216 ATAACAAGAA
*
59066226 AATCAATTTTTTTAAAAAAA-CTCTATAATAATTCTTTAT
1 AATCAATTTTTTTAAAAAAAGCTCTACAATAATTCTTTAT
59066265 AATCAATTTTGTTTAAAAAAAAGCTCTACAATAATTCTTTAT
1 AATCAATTTT-TTT-AAAAAAAGCTCTACAATAATTCTTTAT
59066307 CTTTGTAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
39 10 0.26
40 3 0.08
41 7 0.18
42 18 0.47
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (40 bp):
AATCAATTTTTTTAAAAAAAGCTCTACAATAATTCTTTAT
Found at i:59066463 original size:32 final size:32
Alignment explanation
Indices: 59066413--59066482 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
59066403 GAATAATTAA
*
59066413 ATCTATTAGATAGATATAACTATTAAAGTAAT
1 ATCTATTAAATAGATATAACTATTAAAGTAAT
* *
59066445 ATCTCTTAAATAGATATAACTATTCAAGTAAT
1 ATCTATTAAATAGATATAACTATTAAAGTAAT
59066477 AT-TATT
1 ATCTATT
59066483 TGAATAGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 3 0.09
32 31 0.91
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (32 bp):
ATCTATTAAATAGATATAACTATTAAAGTAAT
Found at i:59067203 original size:24 final size:24
Alignment explanation
Indices: 59067141--59067192 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
59067131 TTTCTAGAAG
* **
59067141 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAACATAATAT
59067165 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATTAACATAATAT
59067189 ATTT
1 ATTT
59067193 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:59071090 original size:196 final size:195
Alignment explanation
Indices: 59070527--59071116 Score: 939
Period size: 196 Copynumber: 3.0 Consensus size: 195
59070517 GAATTTGAGC
* *
59070527 TGAAAGATTTGAGACCAGTAAATAAGATACTTGATATGGAGATTCTCAGAGATAGAAAAGCAAGT
1 TGAAAGATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
* *
59070592 AAATTGTATCTAAGTAAAAAGGGGTACATTGAGAAAGTTCTTTGCAGGTTCAATATGCAGAGTGC
66 AAATTGTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCA-GTTCAATATGCAGAGTGC
* * ** * *
59070657 TAAGCCTGTTAGTATTCCTTTAGCAGCCCATTTCAAACTTTCATTAGTTTTGTCTCCACGATCAG
130 TAAGCCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAG
59070722 A
195 A
* *
59070723 TGAAAGATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTTAGAGATAGAAAAGCAAAT
1 TGAAAGATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
* *
59070788 AAATT-TACCTAAGTTAGAAGGGGTACATTGAGAAAGTTCTTTGCAGATTCAATATGTAGAGTGC
66 AAATTGTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCAG-TTCAATATGCAGAGTGC
*
59070852 TAAGCCTGTTAGTACTCCTTTAGCAACCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAG
130 TAAGCCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAG
59070917 A
195 A
* *
59070918 TGAAAGATTTGGGACCAGTAAAGAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGTAAGT
1 TGAAAGATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
* * *
59070983 AAATTGTACCCAAGTCAGAACGGGTACATTGAGAAAGTTCTTTGCATGTTCAATATGCAGAGTGC
66 AAATTGTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCA-GTTCAATATGCAGAGTGC
* * *
59071048 TAACCCTGTTAGTACTCCTTTAGCAGCCCATTTTAGACTTTCATCGGCTTTGTCTCCACAACCAG
130 TAAGCCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAG
59071113 A
195 A
59071114 TGA
1 TGA
59071117 TGAGATTGAG
Statistics
Matches: 364, Mismatches: 27, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
194 1 0.00
195 178 0.49
196 184 0.51
197 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (195 bp):
TGAAAGATTTGGGACCAGTAAATAAGATACTTGGTATGGAGATTCTCAGAGATAGAAAAGCAAGT
AAATTGTACCTAAGTAAGAAGGGGTACATTGAGAAAGTTCTTTGCAGTTCAATATGCAGAGTGCT
AAGCCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCGGCTTTGTCTCCACAATCAGA
Found at i:59071669 original size:24 final size:24
Alignment explanation
Indices: 59071641--59071692 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
59071631 TTTCTAGAAG
* **
59071641 ATTTAATATTTATGAGTATAATAT
1 ATTTAACATTTATGAACATAATAT
* *
59071665 ATTTAGCATTTATTAACATAATAT
1 ATTTAACATTTATGAACATAATAT
59071689 ATTT
1 ATTT
59071693 GACTTTGATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (24 bp):
ATTTAACATTTATGAACATAATAT
Found at i:59073261 original size:48 final size:48
Alignment explanation
Indices: 59073216--59073314 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
59073206 ATTGAGAAGC
59073216 TGTGTAAATTACATCACCTTGCTTAAATTGAGTGAGGCGTCGAGAACT
1 TGTGTAAATTACATCACCTTGCTTAAATTGAGTGAGGCGTCGAGAACT
*
59073264 TGTGTAAATTACATCACCTTGCTTAAATTGAGTGAGGCGTGGAGAACT
1 TGTGTAAATTACATCACCTTGCTTAAATTGAGTGAGGCGTCGAGAACT
59073312 TGT
1 TGT
59073315 TTTGAAAATT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (48 bp):
TGTGTAAATTACATCACCTTGCTTAAATTGAGTGAGGCGTCGAGAACT
Found at i:59075401 original size:28 final size:28
Alignment explanation
Indices: 59075367--59075465 Score: 82
Period size: 26 Copynumber: 3.7 Consensus size: 28
59075357 AAAATATAAC
*
59075367 AAATATATATATGTATATATAAATTATA
1 AAATATATATAAGTATATATAAATTATA
* *
59075395 AAATATATGTACA-TATATGT--ATTATA
1 AAATATATATA-AGTATATATAAATTATA
* ** * *
59075421 AAATGTATATAAGTATACGTATATTTTA
1 AAATATATATAAGTATATATAAATTATA
59075449 AAAT-TATA-AAGTATATA
1 AAATATATATAAGTATATA
59075466 CAAAAAAAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
25 1 0.02
26 28 0.48
27 4 0.07
28 25 0.43
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (28 bp):
AAATATATATAAGTATATATAAATTATA
Found at i:59075437 original size:26 final size:25
Alignment explanation
Indices: 59075367--59075465 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 25
59075357 AAAATATAAC
*
59075367 AAATATATATATGTATATATAAATTATA
1 AAAT-TATATAAGTATATAT--ATTATA
* *
59075395 AAATATATGTACA-TATATGTATTATA
1 AAAT-TATATA-AGTATATATATTATA
*
59075421 AAATGTATATAAGTATACGTATATTTTA
1 AAAT-TATATAAGTATA--TATATTATA
59075449 AAATTATA-AAGTATATA
1 AAATTATATAAGTATATA
59075466 CAAAAAAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 26 0.43
27 4 0.07
28 27 0.45
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (25 bp):
AAATTATATAAGTATATATATTATA
Found at i:59075626 original size:12 final size:11
Alignment explanation
Indices: 59075611--59075658 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 11
59075601 AACAAAGTTT
59075611 TAAATAAAGATA
1 TAAATAAAGA-A
59075623 TAAAT-AAGCAAA
1 TAAATAAAG--AA
59075635 TAAATAAATGAA
1 TAAATAAA-GAA
59075647 TAAATAAAGAA
1 TAAATAAAGAA
59075658 T
1 T
59075659 TAAGATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
11 7 0.22
12 21 0.66
13 3 0.09
14 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (11 bp):
TAAATAAAGAA
Found at i:59077332 original size:9 final size:9
Alignment explanation
Indices: 59077318--59077359 Score: 75
Period size: 9 Copynumber: 4.7 Consensus size: 9
59077308 TTTGGTTAAA
59077318 AATTAACCG
1 AATTAACCG
59077327 AATTAACCG
1 AATTAACCG
*
59077336 AATTAACTG
1 AATTAACCG
59077345 AATTAACCG
1 AATTAACCG
59077354 AATTAA
1 AATTAA
59077360 TCAAATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.48, C:0.17, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:59084108 original size:16 final size:18
Alignment explanation
Indices: 59084077--59084113 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
59084067 TGTTTTCATT
*
59084077 TAAATATTTTATAATTTA
1 TAAATATTTTATAATTAA
59084095 TAAA-ATTTTA-AATTAA
1 TAAATATTTTATAATTAA
59084111 TAA
1 TAA
59084114 TAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAATATTTTATAATTAA
Found at i:59084132 original size:22 final size:23
Alignment explanation
Indices: 59084080--59084132 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
59084070 TTTCATTTAA
*
59084080 ATATTTT-ATAATTTATAAAATT
1 ATATTTTAATAATTAATAAAATT
* **
59084102 TTAAATTAATAA-TAATAAAATT
1 ATATTTTAATAATTAATAAAATT
59084124 ATATTTTAA
1 ATATTTTAA
59084133 CCTTCTAAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATATTTTAATAATTAATAAAATT
Found at i:59084170 original size:29 final size:28
Alignment explanation
Indices: 59084107--59084181 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
59084097 AAATTTTAAA
* * *
59084107 TTAATAATAATAAAATTATATTTTAACCT
1 TTAAAAATAATAAAA-AATAATTTAACCT
*
59084136 TCTAAAAATAATAAAAAATAATTTAATCGT
1 T-TAAAAATAATAAAAAATAATTTAA-CCT
*
59084166 TTAAAAATTATAAAAA
1 TTAAAAATAATAAAAA
59084182 TAAATTATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.37
Consensus pattern (28 bp):
TTAAAAATAATAAAAAATAATTTAACCT
Found at i:59084188 original size:13 final size:13
Alignment explanation
Indices: 59084170--59084196 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
59084160 AATCGTTTAA
59084170 AAATTATAAAAAT
1 AAATTATAAAAAT
59084183 AAATTATAAAAAT
1 AAATTATAAAAAT
59084196 A
1 A
59084197 TTAAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATTATAAAAAT
Found at i:59084300 original size:5 final size:5
Alignment explanation
Indices: 59084290--59084314 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
59084280 TATAATGGTC
59084290 TTCCA TTCCA TTCCA TTCCA TTCCA
1 TTCCA TTCCA TTCCA TTCCA TTCCA
59084315 GTACATCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (5 bp):
TTCCA
Found at i:59088010 original size:14 final size:14
Alignment explanation
Indices: 59087991--59088018 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
59087981 TTGCCTTTAA
59087991 AAATAAGTTAATTC
1 AAATAAGTTAATTC
59088005 AAATAAGTTAATTC
1 AAATAAGTTAATTC
59088019 TTTTTAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
AAATAAGTTAATTC
Found at i:59092195 original size:34 final size:35
Alignment explanation
Indices: 59092138--59092204 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
59092128 CAAACACCAG
* * *
59092138 AAAATATTTTCTAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
59092173 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
59092205 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:59092196 original size:14 final size:14
Alignment explanation
Indices: 59092173--59092212 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
59092163 ACAGAAAAGT
*
59092173 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
59092187 AAATCATTTTACGG
1 AAAACATTTTACAG
59092201 AAAACATTTTAC
1 AAAACATTTTAC
59092213 TGCCACTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:59093791 original size:87 final size:87
Alignment explanation
Indices: 59093600--59093820 Score: 214
Period size: 87 Copynumber: 2.6 Consensus size: 87
59093590 GGCGTTCTTT
* * * * * * *
59093600 TAACAAAGTTTGCCAC-AAGGCATTCCTTTAATAGAGATGGGCACAAAGACATCCTTTTAACAGA
1 TAACAAAGATAGCCACAAAGACATTCATTTAATAGAGATAGCCACAAACACATCCTTTTAACAGA
* * *
59093664 GATGACCACAAAGGCATTCATT
66 AATCACCACAAAGGCATTCATA
* *
59093686 TAACAAAGATATCGACAAAGACATTCATTTAACTA-AGATAGCCACAAACACATCCTTTTAACAG
1 TAACAAAGATAGCCACAAAGACATTCATTTAA-TAGAGATAGCCACAAACACATCCTTTTAACAG
* *
59093750 AAATCACCACAAAGGCTTTCCTA
65 AAATCACCACAAAGGCATTCATA
** * * * * *
59093773 TAACAGTGATCGCCACAAAGGC-TTCCTTAAAATAGAGATCGCCACAAA
1 TAACAAAGATAGCCACAAAGACATTCATT-TAATAGAGATAGCCACAAA
59093821 GGCTTCCATT
Statistics
Matches: 108, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
86 19 0.18
87 87 0.81
88 2 0.02
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (87 bp):
TAACAAAGATAGCCACAAAGACATTCATTTAATAGAGATAGCCACAAACACATCCTTTTAACAGA
AATCACCACAAAGGCATTCATA
Found at i:59093879 original size:29 final size:29
Alignment explanation
Indices: 59093622--59093879 Score: 152
Period size: 29 Copynumber: 8.9 Consensus size: 29
59093612 CCACAAGGCA
* * *
59093622 TTCC-TTTAATAGAGATGGGCACAAAGAC
1 TTCCATTTAACAGAGATCGCCACAAAGAC
* * *
59093650 ATCCTTTTAACAGAGAT-GACCACAAAGGC
1 TTCCATTTAACAGAGATCG-CCACAAAGAC
* ** *
59093679 ATT-CATTTAACAAAGATATCGACAAAGAC
1 -TTCCATTTAACAGAGATCGCCACAAAGAC
* *
59093708 ATT-CATTTAACTA-AGATAGCCACAAACAC
1 -TTCCATTTAAC-AGAGATCGCCACAAAGAC
* * * * *
59093737 ATCCTTTTAACAGAAATCACCACAAAGGC
1 TTCCATTTAACAGAGATCGCCACAAAGAC
* * *
59093766 TTTCC-TATAACAGTGATCGCCACAAAGGC
1 -TTCCATTTAACAGAGATCGCCACAAAGAC
* * *
59093795 TTCC-TTAAAATAGAGATCGCCACAAAGGC
1 TTCCATT-TAACAGAGATCGCCACAAAGAC
* * * *
59093824 TTCCATTTAACAAAGATCACTACAAAGAT
1 TTCCATTTAACAGAGATCGCCACAAAGAC
* *
59093853 TTCCATTTAACAGAGATTGCCATAAAG
1 TTCCATTTAACAGAGATCGCCACAAAG
59093880 GCTCACTTAT
Statistics
Matches: 179, Mismatches: 41, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
28 11 0.06
29 161 0.90
30 7 0.04
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (29 bp):
TTCCATTTAACAGAGATCGCCACAAAGAC
Found at i:59094139 original size:19 final size:20
Alignment explanation
Indices: 59094117--59094158 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
59094107 ATACAGACAC
59094117 ATACACTT-CATGCAGACTT
1 ATACACTTACATGCAGACTT
59094136 AT--ACTTGACATGCAGACTT
1 ATACACTT-ACATGCAGACTT
59094155 ATAC
1 ATAC
59094159 TTGACAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 6
0.76 0.00 0.24
Matches are distributed among these distances:
17 4 0.21
19 15 0.79
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (20 bp):
ATACACTTACATGCAGACTT
Found at i:59094159 original size:19 final size:19
Alignment explanation
Indices: 59094125--59094164 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
59094115 ACATACACTT
59094125 CATGCAGACTTATACTTGA
1 CATGCAGACTTATACTTGA
59094144 CATGCAGACTTATACTTGA
1 CATGCAGACTTATACTTGA
59094163 CA
1 CA
59094165 GACTCGTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGCAGACTTATACTTGA
Found at i:59094398 original size:39 final size:39
Alignment explanation
Indices: 59094345--59094491 Score: 222
Period size: 39 Copynumber: 3.8 Consensus size: 39
59094335 AGAAATGCGG
* * *
59094345 TGATTATTCAGGCTATGTGCCTAGCAGGCTATGTGCCGG
1 TGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCCGA
*
59094384 TGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGTCGA
1 TGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCCGA
*
59094423 TGATTCTTCGGGCTATGTGCCTAGCAGGCTGTGTGCCGA
1 TGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCCGA
* * *
59094462 TGTTTATTCGGGCTCTGTGCCCAGCAGGCT
1 TGATTATTCGGGCTATGTGCCTAGCAGGCT
59094492 TTGTATTGGT
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.14, C:0.22, G:0.32, T:0.32
Consensus pattern (39 bp):
TGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTGCCGA
Found at i:59099432 original size:40 final size:40
Alignment explanation
Indices: 59099327--59099572 Score: 241
Period size: 40 Copynumber: 6.2 Consensus size: 40
59099317 AGATGCATAA
* * * *
59099327 CAGGGGAACCAAAGTGCAATCAGGAGCAC-GAATGTGCGAT
1 CAGGGGTACCAAAGTACAATCAGGGGCACTG-ATGTGCAAT
* * *
59099367 CAGGGGCACCAAAGTGAAAAT-AGGGGCA-TAGATGTGCATT
1 CAGGGGTACCAAAGT-ACAATCAGGGGCACT-GATGTGCAAT
* *
59099407 CAGGGGTACCAAAGTACAAGCAGGGGCACTGATGTGCAAA
1 CAGGGGTACCAAAGTACAATCAGGGGCACTGATGTGCAAT
* ** * *
59099447 CATGTCTACCAAAGTACAATTAGGGGCATTGATGTGCAAAT
1 CAGGGGTACCAAAGTACAATCAGGGGCACTGATGTGC-AAT
* * *
59099488 -AGGGGTACCAAAGTAGAAAT-AGGGGTACTGATGTGCAAA
1 CAGGGGTACCAAAGTA-CAATCAGGGGCACTGATGTGCAAT
* *
59099527 CAAGGGTACCAAAGTACAATCAGGGGCACTGATGTGCAAA
1 CAGGGGTACCAAAGTACAATCAGGGGCACTGATGTGCAAT
59099567 CAGGGG
1 CAGGGG
59099573 GATTTTTTCA
Statistics
Matches: 168, Mismatches: 29, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
39 8 0.05
40 150 0.89
41 10 0.06
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (40 bp):
CAGGGGTACCAAAGTACAATCAGGGGCACTGATGTGCAAT
Found at i:59099572 original size:20 final size:20
Alignment explanation
Indices: 59099476--59099572 Score: 70
Period size: 20 Copynumber: 4.8 Consensus size: 20
59099466 TTAGGGGCAT
*
59099476 TGATGTGCAAATAGGGGTAC
1 TGATGTGCAAACAGGGGTAC
** * *
59099496 CAAAGTAG-AAATAGGGGTAC
1 TGATGT-GCAAACAGGGGTAC
*
59099516 TGATGTGCAAACAAGGGTAC
1 TGATGTGCAAACAGGGGTAC
** * * * *
59099536 CAAAGTACAATCAGGGGCAC
1 TGATGTGCAAACAGGGGTAC
59099556 TGATGTGCAAACAGGGG
1 TGATGTGCAAACAGGGG
59099573 GATTTTTTCA
Statistics
Matches: 55, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
19 1 0.02
20 53 0.96
21 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (20 bp):
TGATGTGCAAACAGGGGTAC
Found at i:59104900 original size:39 final size:39
Alignment explanation
Indices: 59104856--59104935 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
59104846 AACTGAAGGT
59104856 AAGTGTCATTGTAAAGAATGTTTACATTACGAAAAAAGC
1 AAGTGTCATTGTAAAGAATGTTTACATTACGAAAAAAGC
59104895 AAGTGTCATTGTAAAGAATGTTTACATTACGAAAAAAGC
1 AAGTGTCATTGTAAAGAATGTTTACATTACGAAAAAAGC
59104934 AA
1 AA
59104936 CTTACTTCGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (39 bp):
AAGTGTCATTGTAAAGAATGTTTACATTACGAAAAAAGC
Found at i:59110896 original size:17 final size:16
Alignment explanation
Indices: 59110869--59110900 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
59110859 TGATAGATCT
59110869 CTGATGAGCTTCCAAA
1 CTGATGAGCTTCCAAA
59110885 CTGATCGAGCTTCCAA
1 CTGAT-GAGCTTCCAA
59110901 TAATATATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (16 bp):
CTGATGAGCTTCCAAA
Found at i:59115299 original size:19 final size:19
Alignment explanation
Indices: 59115263--59115300 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
59115253 AGCATGAGTC
* *
59115263 ATCATTAATTTGAGTACCA
1 ATCATTAATTTCAATACCA
59115282 ATCATTAATTTCAATACCA
1 ATCATTAATTTCAATACCA
59115301 TTCAATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.37
Consensus pattern (19 bp):
ATCATTAATTTCAATACCA
Found at i:59123501 original size:16 final size:17
Alignment explanation
Indices: 59123470--59123503 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
59123460 CAATTCAGTC
*
59123470 CAAAATTCATACTTTTG
1 CAAAATTCACACTTTTG
59123487 CAAAATT-ACACTTTTG
1 CAAAATTCACACTTTTG
59123503 C
1 C
59123504 CCTATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAATTCACACTTTTG
Found at i:59128415 original size:29 final size:29
Alignment explanation
Indices: 59128377--59128465 Score: 144
Period size: 29 Copynumber: 3.1 Consensus size: 29
59128367 CCCATTTTCA
59128377 CATT-TTGATGGTCGTCACCAACCCTTTT
1 CATTGTTGATGGTCGTCACCAACCCTTTT
* *
59128405 CATTGTTGATGATCGTCACCAACCCTTTC
1 CATTGTTGATGGTCGTCACCAACCCTTTT
*
59128434 CATTGTTGATGGTCGTCACCATCCCTTTT
1 CATTGTTGATGGTCGTCACCAACCCTTTT
59128463 CAT
1 CAT
59128466 AATTTTATAG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 4 0.07
29 51 0.93
ACGTcount: A:0.18, C:0.29, G:0.15, T:0.38
Consensus pattern (29 bp):
CATTGTTGATGGTCGTCACCAACCCTTTT
Found at i:59128523 original size:30 final size:28
Alignment explanation
Indices: 59128454--59128641 Score: 164
Period size: 29 Copynumber: 6.4 Consensus size: 28
59128444 GGTCGTCACC
**
59128454 ATCCCTTTTCATAATTTTATAGCCAGAGCT
1 ATCCCTTTTCAT-ATTCGATAGCCA-AGCT
** * *
59128484 ATCTGTTTTCATGATTTGATAGCCGAAGCC
1 ATCCCTTTTCAT-ATTCGATAGCC-AAGCT
* *
59128514 ATCCCTTTTCATAGTTCGATGGTCATCA-C-
1 ATCCCTTTTCATA-TTCGATAGCCA--AGCT
* * *
59128543 ATCCCTTTTCATAATCGATAGTCGAAACT
1 ATCCCTTTTCATATTCGATAG-CCAAGCT
*
59128572 ATCCCTTTTCATAATCGATAGCCAGAGCT
1 ATCCCTTTTCATATTCGATAGCCA-AGCT
59128601 ATCCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATATTCGATAGCC-AAGCT
59128630 ATCCCTTTTCAT
1 ATCCCTTTTCAT
59128642 TTGTCAATGA
Statistics
Matches: 132, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
27 1 0.01
28 9 0.07
29 78 0.59
30 42 0.32
31 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (28 bp):
ATCCCTTTTCATATTCGATAGCCAAGCT
Found at i:59128581 original size:58 final size:58
Alignment explanation
Indices: 59128454--59128641 Score: 182
Period size: 58 Copynumber: 3.2 Consensus size: 58
59128444 GGTCGTCACC
** * ** * * * *
59128454 ATCCCTTTTCATAATTTTATAGCCAGAGCTATCTGTTTTCATGATTTGATAGCCGAAGCC
1 ATCCCTTTTCATAA-TCGATAGCCACAGCTATCCCTTTTCAT-AATCGATAGCCGAAACT
* * * *
59128514 ATCCCTTTTCATAGTTCGATGGTCATCA-C-ATCCCTTTTCATAATCGATAGTCGAAACT
1 ATCCCTTTTCATA-ATCGATAGCCA-CAGCTATCCCTTTTCATAATCGATAGCCGAAACT
* * *
59128572 ATCCCTTTTCATAATCGATAGCCAGAGCTATCCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCACAGCTATCCCTTTTCATAATCGATAGCCGAAACT
59128630 ATCCCTTTTCAT
1 ATCCCTTTTCAT
59128642 TTGTCAATGA
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
56 1 0.01
57 9 0.09
58 63 0.61
59 10 0.10
60 20 0.19
61 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATAATCGATAGCCACAGCTATCCCTTTTCATAATCGATAGCCGAAACT
Found at i:59144047 original size:40 final size:39
Alignment explanation
Indices: 59143956--59144138 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 39
59143946 TCCTCGTTCA
* * *
59143956 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
59143995 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
59144034 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * * *
59144074 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
59144115 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
59144139 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 37 0.30
40 77 0.63
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:59144147 original size:41 final size:41
Alignment explanation
Indices: 59144070--59144147 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
59144060 TTAGTATCTC
* * *
59144070 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
59144111 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
59144148 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:59160599 original size:27 final size:28
Alignment explanation
Indices: 59160558--59160836 Score: 199
Period size: 27 Copynumber: 10.3 Consensus size: 28
59160548 AAAGGTTGTT
* *
59160558 AAATGACCGATATACCCTTGA-AAGGTA
1 AAATGACCGAAATACCCTTCATAAGGTA
* *
59160585 AAATTATCGAAATACCC-TCATAAGGTA
1 AAATGACCGAAATACCCTTCATAAGGTA
* *
59160612 GAATGACCGAAATACCC-TCATAGGGTA
1 AAATGACCGAAATACCCTTCATAAGGTA
* * *
59160639 GAATGACCAAAATA-CCTCCATAAGGTA
1 AAATGACCGAAATACCCTTCATAAGGTA
*
59160666 AAATGACCGAAATACCC-CCAT-AGGATA
1 AAATGACCGAAATACCCTTCATAAGG-TA
** **
59160693 AAATGACTAAAATACTCC--CATTGGGTA
1 AAATGACCGAAATAC-CCTTCATAAGGTA
* *
59160720 AAATGACCAAAATACCC-CCATAAGGTA
1 AAATGACCGAAATACCCTTCATAAGGTA
* *
59160747 AAATGACCGAAATACTC-TCAT-AGGAAA
1 AAATGACCGAAATACCCTTCATAAGG-TA
* * * * *
59160774 AAATGACTGTAATACCC-CCATAGGGTT
1 AAATGACCGAAATACCCTTCATAAGGTA
**
59160801 AAATGAAAGAAATA-CC-TCTATAAGGTA
1 AAATGACCGAAATACCCTTC-ATAAGGTA
59160828 AAATGACCG
1 AAATGACCG
59160837 TAATGCCCCT
Statistics
Matches: 204, Mismatches: 38, Indels: 20
0.78 0.15 0.08
Matches are distributed among these distances:
26 15 0.07
27 181 0.89
28 8 0.04
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (28 bp):
AAATGACCGAAATACCCTTCATAAGGTA
Found at i:59160618 original size:54 final size:54
Alignment explanation
Indices: 59160558--59160836 Score: 239
Period size: 54 Copynumber: 5.2 Consensus size: 54
59160548 AAAGGTTGTT
* * * * *
59160558 AAATGACCGATATACCCTTGA-AAGGTAAAATTATCGAAATACC-CTCATAAGGTA
1 AAATGACCGAAATACCC-TCATAAGGTAAAATGACCAAAATACCTC-CATAAGGTA
* * *
59160612 GAATGACCGAAATACCCTCATAGGGTAGAATGACCAAAATACCTCCATAAGGTA
1 AAATGACCGAAATACCCTCATAAGGTAAAATGACCAAAATACCTCCATAAGGTA
* * **
59160666 AAATGACCGAAATACCCCCAT-AGGATAAAATGACTAAAATA-CTCCCATTGGGTA
1 AAATGACCGAAATACCCTCATAAGG-TAAAATGACCAAAATACCT-CCATAAGGTA
* * * *
59160720 AAATGACCAAAATACCCCCATAAGGTAAAATGACCGAAATA-CTCTCAT-AGGAAA
1 AAATGACCGAAATACCCTCATAAGGTAAAATGACCAAAATACCTC-CATAAGG-TA
* * * * * * *
59160774 AAATGACTGTAATACCCCCATAGGGTTAAATGA-AAGAAATACCTCTATAAGGTA
1 AAATGACCGAAATACCCTCATAAGGTAAAATGACCA-AAATACCTCCATAAGGTA
59160828 AAATGACCG
1 AAATGACCG
59160837 TAATGCCCCT
Statistics
Matches: 185, Mismatches: 30, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
53 9 0.05
54 166 0.90
55 10 0.05
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (54 bp):
AAATGACCGAAATACCCTCATAAGGTAAAATGACCAAAATACCTCCATAAGGTA
Found at i:59160698 original size:81 final size:79
Alignment explanation
Indices: 59160579--59160845 Score: 304
Period size: 81 Copynumber: 3.3 Consensus size: 79
59160569 ATACCCTTGA
* * * * *
59160579 AAGGTAAAATTATCGAAATACCCTCATAAGG-TAGAATGACCGAAATACCCTCATAGGGTAGAAT
1 AAGGTAAAATGACCGAAATACCCCCAT-AGGATAAAATGACTGAAATACCC-CATAGGGTA-AAT
59160643 GACCAAAATACCTCCAT
63 GACCAAAATACCTCCAT
* *
59160660 AAGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACTAAAATACTCCCATTGGGTAAAATG
1 AAGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACTGAAATAC-CCCATAGGGT-AAATG
*
59160725 ACCAAAATACCCCCAT
64 ACCAAAATACCTCCAT
* * * *
59160741 AAGGTAAAATGACCGAAATACTCTCATAGGAAAAAATGACTGTAATACCCCCATAGGGTTAAATG
1 AAGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACTGAAATA-CCCCATAGGG-TAAATG
* *
59160806 A-AAGAAATACCTCTAT
64 ACCA-AAATACCTCCAT
* *
59160822 AAGGTAAAATGACCGTAATGCCCC
1 AAGGTAAAATGACCGAAATACCCC
59160846 TGGAGAGTAA
Statistics
Matches: 159, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
80 4 0.03
81 150 0.94
82 5 0.03
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (79 bp):
AAGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACTGAAATACCCCATAGGGTAAATGAC
CAAAATACCTCCAT
Found at i:59160840 original size:54 final size:55
Alignment explanation
Indices: 59160593--59160845 Score: 252
Period size: 54 Copynumber: 4.7 Consensus size: 55
59160583 TAAAATTATC
* * *
59160593 GAAATACC-CTCATAAGGTAGAATGACCGAAATACCCTCATAGGGTAGAATGACCA
1 GAAATACCTCT-ATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* * *
59160648 -AAATACCTCCATAAGGTAAAATGACCGAAATACCCCCATAGGATAAAATGACTA
1 GAAATACCTCTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* ** * *
59160702 -AAATA-CTCCCATTGGGTAAAATGACCAAAATACCCCCATAAGGTAAAATGACC-
1 GAAATACCT-CTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* * * * *
59160755 GAAATA-CTCTCAT-AGGAAAAAATGACTGTAATACCCCCATAGGGTTAAATGA-AA
1 GAAATACCTCT-ATAAGG-TAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* *
59160809 GAAATACCTCTATAAGGTAAAATGACCGTAATGCCCC
1 GAAATACCTCTATAAGGTAAAATGACCGAAATACCCC
59160846 TGGAGAGTAA
Statistics
Matches: 166, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
53 5 0.03
54 153 0.92
55 8 0.05
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.20
Consensus pattern (55 bp):
GAAATACCTCTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
Found at i:59160946 original size:24 final size:24
Alignment explanation
Indices: 59160879--59160983 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 24
59160869 CCCTCGAGTG
* * *
59160879 TAAATGATTGATTTGTCCGTGATG
1 TAAATGACTGATTTGTCTGTGATT
* *
59160903 TAAATTACT-AATTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
*
59160926 TAAATGACTGATTTGTCTGTGAAT
1 TAAATGACTGATTTGTCTGTGATT
*** *
59160950 GGTATGACGGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
**
59160974 TGTATGACTG
1 TAAATGACTG
59160984 GTTCTGAGCA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
23 19 0.29
24 46 0.71
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.43
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATT
Found at i:59161098 original size:27 final size:27
Alignment explanation
Indices: 59161058--59161114 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
59161048 AGTATTGTAT
*
59161058 TGGTGGCTCTGCCACA-ATCACTGTTAC
1 TGGTGGCTCTGCCACATAT-ACTATTAC
59161085 TGGTGGCT-TGGCCACATATACTATTAC
1 TGGTGGCTCT-GCCACATATACTATTAC
59161112 TGG
1 TGG
59161115 CAGCTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 24 0.89
28 2 0.07
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATATACTATTAC
Found at i:59161120 original size:27 final size:27
Alignment explanation
Indices: 59161068--59161120 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
59161058 TGGTGGCTCT
* **
59161068 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
59161095 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
59161121 TGTTGCAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:59161199 original size:32 final size:31
Alignment explanation
Indices: 59161158--59161264 Score: 106
Period size: 32 Copynumber: 3.4 Consensus size: 31
59161148 GCTACGATGC
* *
59161158 TACTGATGGCTTTGTGCCGATCTTATTACCG
1 TACTGATGGCTTTGTGCCGATCATATTACTG
* * * * *
59161189 TTACTGATGGCTGTGTGTCGGTCATATCACTAC
1 -TACTGATGGCTTTGTGCCGATCATATTACT-G
* *
59161222 TACTGATGACTTTGTGCCAATCATATTACTG
1 TACTGATGGCTTTGTGCCGATCATATTACTG
*
59161253 TACTTATGGCTT
1 TACTGATGGCTT
59161265 GTAGCCATTC
Statistics
Matches: 58, Mismatches: 16, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
31 10 0.17
32 48 0.83
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATATTACTG
Found at i:59161281 original size:22 final size:21
Alignment explanation
Indices: 59161256--59161319 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
59161246 ATTACTGTAC
*
59161256 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATCCTGT
* *
59161278 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATCCTGT
*
59161300 TTACGGCTCTTAGCCATCCT
1 TTATGGCT-TTAGCCATCCT
59161320 AGTTACTAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.42
Consensus pattern (21 bp):
TTATGGCTTTAGCCATCCTGT
Found at i:59163876 original size:43 final size:42
Alignment explanation
Indices: 59163829--59163910 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
59163819 TAATCACAGA
*
59163829 TCGATGCCACTATCCCAGA-TAGGTTCTTACACGAAAACATAAT
1 TCGATGCCAATATCCCAGACTA-G-TCTTACACGAAAACATAAT
* *
59163872 TCGATGCCAATGTCTCAGACGTAGTCTTACACGAAAACA
1 TCGATGCCAATATCCCAGAC-TAGTCTTACACGAAAACA
59163911 CAAATCGGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 31 0.91
44 1 0.03
45 2 0.06
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
TCGATGCCAATATCCCAGACTAGTCTTACACGAAAACATAAT
Found at i:59170563 original size:30 final size:30
Alignment explanation
Indices: 59170514--59170596 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 30
59170504 ATGATTCGAT
* *
59170514 AGCCGAAGCCTTCTCTTTTCATAATTCAAC
1 AGCCGAAGCCATCTGTTTTCATAATTCAAC
* ** **
59170544 AGCTGAAGCCATCTGTTTTCATTGTTTGAC
1 AGCCGAAGCCATCTGTTTTCATAATTCAAC
*
59170574 AGCCGAAGCCATCCGTTTTCATA
1 AGCCGAAGCCATCTGTTTTCATA
59170597 GTTCGATGGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.34
Consensus pattern (30 bp):
AGCCGAAGCCATCTGTTTTCATAATTCAAC
Found at i:59170616 original size:30 final size:30
Alignment explanation
Indices: 59170582--59170662 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
59170572 ACAGCCGAAG
*
59170582 CCATCCGTTTTCATAGTTCGATGGTCGTCA
1 CCATCCATTTTCATAGTTCGATGGTCGTCA
* * * * *
59170612 CCATCCCTTTTCATTGTT-AATGTTTGTCA
1 CCATCCATTTTCATAGTTCGATGGTCGTCA
*
59170641 CCATTCATTTTCATAGTTCGAT
1 CCATCCATTTTCATAGTTCGAT
59170663 AGTTGAAACT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 23 0.56
30 18 0.44
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.43
Consensus pattern (30 bp):
CCATCCATTTTCATAGTTCGATGGTCGTCA
Found at i:59176119 original size:21 final size:21
Alignment explanation
Indices: 59176095--59176140 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
59176085 CCACATGGGT
59176095 GTGTATTCTAGACACACGGTC
1 GTGTATTCTAGACACACGGTC
* * * *
59176116 GTGTCTTGTGGGCACACGGTC
1 GTGTATTCTAGACACACGGTC
59176137 GTGT
1 GTGT
59176141 CTACCCTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (21 bp):
GTGTATTCTAGACACACGGTC
Found at i:59178757 original size:27 final size:27
Alignment explanation
Indices: 59178727--59178785 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
59178717 TTTTGAAGAA
* *
59178727 GACCCATTGGAGAAAGCCTTAGAACTT
1 GACCCATTGGAAAAAGACTTAGAACTT
*
59178754 GACCAATTGGAAAAAGACTTAGAACTT
1 GACCCATTGGAAAAAGACTTAGAACTT
59178781 GACCC
1 GACCC
59178786 TTTAGAGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
GACCCATTGGAAAAAGACTTAGAACTT
Found at i:59201211 original size:15 final size:14
Alignment explanation
Indices: 59201190--59201225 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
59201180 ATAATCATTA
*
59201190 ATAATTATCTTAAT
1 ATAATTATCCTAAT
59201204 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
59201219 ATAATTA
1 ATAATTA
59201226 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:59209209 original size:14 final size:15
Alignment explanation
Indices: 59209192--59209223 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
59209182 GATATTTACA
59209192 TTTATTTA-TTTTAT
1 TTTATTTATTTTTAT
59209206 TTTATTTATTTTTAT
1 TTTATTTATTTTTAT
59209221 TTT
1 TTT
59209224 GGTTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTATTTATTTTTAT
Found at i:59212375 original size:54 final size:54
Alignment explanation
Indices: 59212288--59212508 Score: 309
Period size: 54 Copynumber: 4.1 Consensus size: 54
59212278 GATTCGTGGG
* *
59212288 AAAATTACTGAAATACCCTCGAAGGGTACAATTATTGAAATACCCTCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCAAAGGGT
* *
59212342 AAAATTACCGAAATACCTTCGAAGGGTAAAATTATTGAAATACCCTCAAAGAGT
1 AAAATTACCGAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCAAAGGGT
* * * *
59212396 AAAATTATCGAAATACCCCCGAAAGGTAAAATTATTGAAATACCCTCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCAAAGGGT
* * * * *
59212450 AAAATGACC-AAATTACCCTCGAAGGGTAAAATAACTGAATTACCCTCGAAGGGT
1 AAAATTACCGAAA-TACCCTCGAAGGGTAAAATTATTGAAATACCCTCAAAGGGT
59212504 AAAAT
1 AAAAT
59212509 GACAGAGATA
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 3 0.02
54 146 0.98
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCAAAGGGT
Found at i:59212520 original size:81 final size:79
Alignment explanation
Indices: 59212298--59212548 Score: 261
Period size: 81 Copynumber: 3.1 Consensus size: 79
59212288 AAAATTACTG
* * * *
59212298 AAATACCCTCGAAGGGTACAATTATTGAAATACCCTCAAAGGGTAAAATTACCGAAATACCTTCG
1 AAATACCCTCGAAGGGTAAAATTA-TGAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCG
* **
59212363 AAGGGTAAAATTATTG
65 AAGGGTAAAATGA-CC
* * * * **
59212379 AAATACCCTCAAAGAGTAAAATTATCGAAATACCCCCGAAAGGTAAAATTATTGAAATACCCTCG
1 AAATACCCTCGAAGGGTAAAATTAT-GAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCG
59212444 AAGGGTAAAATGACC
65 AAGGGTAAAATGACC
* * * *
59212459 AAATTACCCTCGAAGGGTAAAATAACTGAATTACCCTCGAAGGGTAAAATGACAGAGATACCC-C
1 AAA-TACCCTCGAAGGGTAAAATTA-TGAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTC
**
59212523 TTTAGGGTAAAATGACC
64 -GAAGGGTAAAATGACC
59212540 AAAATACCC
1 -AAATACCC
59212549 CTATAAGGTA
Statistics
Matches: 141, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
80 5 0.04
81 132 0.94
82 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (79 bp):
AAATACCCTCGAAGGGTAAAATTATGAAATACCCTCGAAGGGTAAAATTACAGAAATACCCTCGA
AGGGTAAAATGACC
Found at i:59212521 original size:27 final size:27
Alignment explanation
Indices: 59212288--59212508 Score: 275
Period size: 27 Copynumber: 8.2 Consensus size: 27
59212278 GATTCGTGGG
59212288 AAAATTACTGAAATACCCTCGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* * *
59212315 ACAATTATTGAAATACCCTCAAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
59212342 AAAATTACCGAAATACCTTCGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* * *
59212369 AAAATTATTGAAATACCCTCAAAGAGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
59212396 AAAATTA-TCGAAATACCCCCGAAAGGT
1 AAAATTACT-GAAATACCCTCGAAGGGT
*
59212423 AAAATTATTGAAATACCCTCGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
* *
59212450 AAAATGAC-CAAATTACCCTCGAAGGGT
1 AAAATTACTGAAA-TACCCTCGAAGGGT
* *
59212477 AAAATAACTGAATTACCCTCGAAGGGT
1 AAAATTACTGAAATACCCTCGAAGGGT
59212504 AAAAT
1 AAAAT
59212509 GACAGAGATA
Statistics
Matches: 165, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.02
27 158 0.96
28 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGAAGGGT
Found at i:59212529 original size:27 final size:26
Alignment explanation
Indices: 59212445--59212591 Score: 111
Period size: 27 Copynumber: 5.5 Consensus size: 26
59212435 ATACCCTCGA
* *
59212445 AGGGTAAAATGACCAAATTACCCTCGA-
1 AGGGTAAAATGA-CAAAATACCC-CTAT
* * * *
59212472 AGGGTAAAATAACTGAATTACCCTCGA-
1 AGGGTAAAATGAC-AAAATACCC-CTAT
* *
59212499 AGGGTAAAATGACAGAGATACCCCTTT
1 AGGGTAAAATGACA-AAATACCCCTAT
59212526 AGGGTAAAATGACCAAAATACCCCTAT
1 AGGGTAAAATGA-CAAAATACCCCTAT
* * *
59212553 AAGGTAAAATGACAATAATGCCCCTAG
1 AGGGTAAAATGACAA-AATACCCCTAT
59212580 AGGGT-AAATGAC
1 AGGGTAAAATGAC
59212592 TATTTTGCCC
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.12
27 87 0.86
28 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (26 bp):
AGGGTAAAATGACAAAATACCCCTAT
Found at i:59212548 original size:54 final size:53
Alignment explanation
Indices: 59212301--59212567 Score: 157
Period size: 54 Copynumber: 5.0 Consensus size: 53
59212291 ATTACTGAAA
* * *** * *
59212301 TACCCTCGAAGGGTACAATTATTGAAATACCCTCAAAGGGTAAAATTACCGAAA-
1 TACCCTCGAAGGGTAAAATAACCAAAATACCCTCGAAGGGTAAAATGA-C-AAAT
* * *** * * *
59212355 TACCTTCGAAGGGTAAAATTATTGAAATACCCTCAAAGAGTAAAATTATCGAAA-
1 TACCCTCGAAGGGTAAAATAACCAAAATACCCTCGAAGGGTAAAATGA-C-AAAT
* * * ***
59212409 TACCCCCGAAAGGTAAAATTATTGAAATACCCTCGAAGGGTAAAATGACCAAAT
1 TACCCTCGAAGGGTAAAATAACCAAAATACCCTCGAAGGGTAAAATGA-CAAAT
** *
59212463 TACCCTCGAAGGGTAAAATAACTGAATTACCCTCGAAGGGTAAAATGACAGAGA-
1 TACCCTCGAAGGGTAAAATAACCAAAATACCCTCGAAGGGTAAAATGACA-A-AT
** * * *
59212517 TACCC-CTTTAGGGTAAAATGACCAAAATACCC-CTATAAGGTAAAATGACAA
1 TACCCTC-GAAGGGTAAAATAACCAAAATACCCTCGA-AGGGTAAAATGACAA
59212568 TAATGCCCCT
Statistics
Matches: 184, Mismatches: 24, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
53 9 0.05
54 174 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (53 bp):
TACCCTCGAAGGGTAAAATAACCAAAATACCCTCGAAGGGTAAAATGACAAAT
Found at i:59212672 original size:24 final size:23
Alignment explanation
Indices: 59212609--59212672 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
59212599 CCCCTCGACG
59212609 TTAAATGATTGATTTGTCCGTGA
1 TTAAATGATTGATTTGTCCGTGA
* * *
59212632 TGACAATGACTGATTTGTCTGTGA
1 TTA-AATGATTGATTTGTCCGTGA
*
59212656 TTTAAATGATTGTTTTG
1 -TTAAATGATTGATTTG
59212673 CCTATGAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 2 0.06
24 29 0.88
25 2 0.06
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (23 bp):
TTAAATGATTGATTTGTCCGTGA
Found at i:59212913 original size:32 final size:32
Alignment explanation
Indices: 59212872--59213087 Score: 170
Period size: 32 Copynumber: 6.8 Consensus size: 32
59212862 GATGCTGCTA
59212872 ATGGCTTTGTGTAGATCATATTACCGTTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTG
** * ** * *
59212904 ATGGCTTTGTACAGGTCATACCACTGCTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTG
* * *
59212936 ATGGCTTTGTGTCGGTCATATTACTGTTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTG
* * *
59212968 ATGG-TTGTGTGCCA-ATCATATCA-CTTCTACTG
1 ATGGCTT-TGTG-TAGATCATATTACCGT-TACTG
* *
59213000 ATGGCTTTATGTCGATCATATTACCGTTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTG
* * * * * *
59213032 ATGGCTGTGTGTCGATCACATCACTGCTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTG
*
59213064 ATGGCTTTGTGCCA-ATCATATTAC
1 ATGGCTTTGTG-TAGATCATATTAC
59213088 TGTATTTATG
Statistics
Matches: 142, Mismatches: 35, Indels: 14
0.74 0.18 0.07
Matches are distributed among these distances:
31 3 0.02
32 135 0.95
33 4 0.03
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (32 bp):
ATGGCTTTGTGTAGATCATATTACCGTTACTG
Found at i:59212946 original size:64 final size:64
Alignment explanation
Indices: 59212872--59213087 Score: 262
Period size: 64 Copynumber: 3.4 Consensus size: 64
59212862 GATGCTGCTA
* *
59212872 ATGGCTTTGTGTAGATCATATTACCGTTACTGATGGCTT-TGTACAGGTCATACCACTGCTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTGATGGCTTGTGT-CAGATCATATCACTGCTACTG
* * * *
59212936 ATGGCTTTGTGTCGGTCATATTACTGTTACTGATGG-TTGTGTGCCA-ATCATATCACTTCTACT
1 ATGGCTTTGTGTAGATCATATTACCGTTACTGATGGCTTGTGT--CAGATCATATCACTGCTACT
59212999 G
64 G
* * *
59213000 ATGGCTTTATGTCGATCATATTACCGTTACTGATGGCTGTGTGTC-GATCACATCACTGCTACTG
1 ATGGCTTTGTGTAGATCATATTACCGTTACTGATGGCT-TGTGTCAGATCATATCACTGCTACTG
*
59213064 ATGGCTTTGTGCCA-ATCATATTAC
1 ATGGCTTTGTG-TAGATCATATTAC
59213088 TGTATTTATG
Statistics
Matches: 131, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
63 2 0.02
64 121 0.92
65 3 0.02
66 5 0.04
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (64 bp):
ATGGCTTTGTGTAGATCATATTACCGTTACTGATGGCTTGTGTCAGATCATATCACTGCTACTG
Found at i:59216067 original size:23 final size:25
Alignment explanation
Indices: 59216040--59216105 Score: 64
Period size: 23 Copynumber: 2.7 Consensus size: 25
59216030 TTCCTAATTA
59216040 ATGGCTCTCCGGACCTTCC-CA-AT
1 ATGGCTCTCCGGACCTTCCTCATAT
* ** * *
59216063 ATGGCTCACTTGAACTTCCTGATAT
1 ATGGCTCTCCGGACCTTCCTCATAT
*
59216088 ATGGCTATCCGGACCTTC
1 ATGGCTCTCCGGACCTTC
59216106 TCGATTAATG
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
23 15 0.48
24 1 0.03
25 15 0.48
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.30
Consensus pattern (25 bp):
ATGGCTCTCCGGACCTTCCTCATAT
Found at i:59217620 original size:231 final size:232
Alignment explanation
Indices: 59217193--59217647 Score: 777
Period size: 231 Copynumber: 2.0 Consensus size: 232
59217183 ACACGGGCGC
*
59217193 GTGTCTCAGCCGTGTGTGACACACAGCCTAGCACATAGACGTGTGGTTTGGCCATGTGTCCCCTG
1 GTGTCTCAGCCGTGTGTGA-ACACAGCCTAGCACATAGACGTGTGGTTTGGCCATGTGTCCCCTA
* * *
59217258 CATCTTTAAAATTAAAAACAGAATGCTCAGAATTTCTTACACAGCCTAGCATACAGGCGTGTGGC
65 CATCTTTAAAATTAAAAACAGAATGCTCAGAATTTCTCACACAGCCTAGCACACAGGCATGTGGC
*
59217323 TTGGCCGTGTGACCTAAGTAAGAATGCTCCCAAATTTGGACACAGGCTGGGACACGGCCGTGTGC
130 TTGGCCGTGTGACCTAAGTAAGAATGCTCCCAAATTTGGACACAGGCTGGGACACGGCCATGTGC
59217388 TCTACTTCGAATGCCCACACGGCCTAAGATACGAGCAT
195 TCTACTTCGAATGCCCACACGGCCTAAGATACGAGCAT
* * **
59217426 GTGTCTCTGCTGTGTGTG-ACACAGCCTAGCACATAGGTGTGTGGTTTGGCCATGTGTCCCCTAC
1 GTGTCTCAGCCGTGTGTGAACACAGCCTAGCACATAGACGTGTGGTTTGGCCATGTGTCCCCTAC
* * *
59217490 ATCTTTAAAATTCAAAACAGAATGCTCAGAATTTCTCACATAGCCTAGCACACGGGCATGTGGCT
66 ATCTTTAAAATTAAAAACAGAATGCTCAGAATTTCTCACACAGCCTAGCACACAGGCATGTGGCT
59217555 TGGCCGTGTGACCTAAGTAAGAATGCTCCCAAATTTGGACACAGGCTGGGACACGGCCATGTGCT
131 TGGCCGTGTGACCTAAGTAAGAATGCTCCCAAATTTGGACACAGGCTGGGACACGGCCATGTGCT
*
59217620 CTACTTCGAATGCCCACGCGGCCTAAGA
196 CTACTTCGAATGCCCACACGGCCTAAGA
59217648 CACGGGTATG
Statistics
Matches: 209, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
231 193 0.92
233 16 0.08
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (232 bp):
GTGTCTCAGCCGTGTGTGAACACAGCCTAGCACATAGACGTGTGGTTTGGCCATGTGTCCCCTAC
ATCTTTAAAATTAAAAACAGAATGCTCAGAATTTCTCACACAGCCTAGCACACAGGCATGTGGCT
TGGCCGTGTGACCTAAGTAAGAATGCTCCCAAATTTGGACACAGGCTGGGACACGGCCATGTGCT
CTACTTCGAATGCCCACACGGCCTAAGATACGAGCAT
Found at i:59220835 original size:27 final size:27
Alignment explanation
Indices: 59220809--59221076 Score: 313
Period size: 27 Copynumber: 9.9 Consensus size: 27
59220799 ATAATTATCG
* * *
59220809 AAATACCCTCGATGGATAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTACCA
***
59220836 AAATACCCTCGATGGGTAAAATTATTG
1 AAATACCCTCGATGGGTAAAATTACCA
*
59220863 AAATACCCTCGATGGGTAATATTACCA
1 AAATACCCTCGATGGGTAAAATTACCA
* *
59220890 AAATACCCCCAATGGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTACCA
59220917 AAATACCCTCGATGGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTACCA
* * * *
59220944 AAATACCCCCAATGGGTAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTACCA
* **
59220971 AAATACCTTTAATGGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTACCA
* * **
59220998 AAATAACCTTGATGGGTAAAATTACTG
1 AAATACCCTCGATGGGTAAAATTACCA
* *
59221025 AAATA-CCTCTAATAGGTAAAATTACCA
1 AAATACCCTC-GATGGGTAAAATTACCA
*
59221052 AAATACCCCCGATGGGTAAAATTAC
1 AAATACCCTCGATGGGTAAAATTAC
59221077 TGTAATACCC
Statistics
Matches: 206, Mismatches: 33, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 3 0.01
27 200 0.97
28 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
AAATACCCTCGATGGGTAAAATTACCA
Found at i:59220894 original size:54 final size:54
Alignment explanation
Indices: 59220796--59221086 Score: 350
Period size: 54 Copynumber: 5.4 Consensus size: 54
59220786 GCGATTCGTA
* * * * * *
59220796 GGTATAATTATCGAAATACCCTCGATGGATAAAATTATCGAAATACCCTCGATG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATG
** * *
59220850 GGTAAAATTATTGAAATACCCTCGATGGGTAATATTACCAAAATACCCCCAATG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATG
* *
59220904 GGTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCAATG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATG
* * ** * **
59220958 GGTAAAATTATCGAAATACCTTTAATGGGTAAAATTACCAAAATAACCTTGATG
1 GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATG
* * *
59221012 GGTAAAATTACTGAAATA-CCTCTAATAGGTAAAATTACCAAAATACCCCCGATG
1 GGTAAAATTACCGAAATACCCTC-GATGGGTAAAATTACCAAAATACCCCCGATG
* *
59221066 GGTAAAATTACTGTAATACCC
1 GGTAAAATTACCGAAATACCC
59221087 CCATTAGGGT
Statistics
Matches: 205, Mismatches: 30, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
53 2 0.01
54 201 0.98
55 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (54 bp):
GGTAAAATTACCGAAATACCCTCGATGGGTAAAATTACCAAAATACCCCCGATG
Found at i:59224492 original size:19 final size:20
Alignment explanation
Indices: 59224468--59224515 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
59224458 ACTAAAAATC
59224468 TTAATAAAATAT-TAATTAA
1 TTAATAAAATATCTAATTAA
**
59224487 TTAAT-ATTTATCTAATTAA
1 TTAATAAAATATCTAATTAA
59224506 TTAATTAAAA
1 TTAA-TAAAA
59224516 ATAGCACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 1 0.05
21 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAATAAAATATCTAATTAA
Found at i:59229511 original size:35 final size:35
Alignment explanation
Indices: 59229465--59229550 Score: 118
Period size: 35 Copynumber: 2.5 Consensus size: 35
59229455 GTTGATGTTC
*
59229465 TGATTCACATGTTAAGTATGTCATATTTCTGATTA
1 TGATTCGCATGTTAAGTATGTCATATTTCTGATTA
* * * *
59229500 TGATTCGCATGTTAAATATGTCATATTTTTTATTC
1 TGATTCGCATGTTAAGTATGTCATATTTCTGATTA
*
59229535 TAATTCGCATGTTAAG
1 TGATTCGCATGTTAAG
59229551 CATGCCTACT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.47
Consensus pattern (35 bp):
TGATTCGCATGTTAAGTATGTCATATTTCTGATTA
Found at i:59231024 original size:96 final size:96
Alignment explanation
Indices: 59230856--59231046 Score: 364
Period size: 96 Copynumber: 2.0 Consensus size: 96
59230846 GGAATAAGAA
59230856 AGTTTACACTCAGAACTTAGAGTAGGGGTTTAGGCTACTCCTAAGCTCCCATTTAACACTATGAA
1 AGTTTACACTCAGAACTTAGAGTAGGGGTTTAGGCTACTCCTAAGCTCCCATTTAACACTATGAA
*
59230921 TCGTGACTACAAGCAGTGATTCTAAACACTC
66 TCATGACTACAAGCAGTGATTCTAAACACTC
*
59230952 AGTTTACACTCAGAACTTAGAGTAGGGGTTTAGGCTACTCCTAAGCTTCCATTTAACACTATGAA
1 AGTTTACACTCAGAACTTAGAGTAGGGGTTTAGGCTACTCCTAAGCTCCCATTTAACACTATGAA
59231017 TCATGACTACAAGCAGTGATTCTAAACACT
66 TCATGACTACAAGCAGTGATTCTAAACACT
59231047 TACCGTTCAC
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (96 bp):
AGTTTACACTCAGAACTTAGAGTAGGGGTTTAGGCTACTCCTAAGCTCCCATTTAACACTATGAA
TCATGACTACAAGCAGTGATTCTAAACACTC
Found at i:59233635 original size:58 final size:58
Alignment explanation
Indices: 59233544--59233662 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 58
59233534 TTACCCTTGT
59233544 TTTTGAGCATGGAAGTAGTAATGTTTTATTTTTTTACTTAAGGGTAATATAGGCCTTC
1 TTTTGAGCATGGAAGTAGTAATGTTTTATTTTTTTACTTAAGGGTAATATAGGCCTTC
59233602 TTTTGAGCATGGAAGTAGTAATGTTTTTATTTTTTTTACTTAAGGGTAATATAGGCCTTC
1 TTTTGAGCATGGAAGTAGTAATG-TTTTA-TTTTTTTACTTAAGGGTAATATAGGCCTTC
59233662 T
1 T
59233663 AATATAAGGC
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 23 0.39
59 5 0.08
60 31 0.53
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.46
Consensus pattern (58 bp):
TTTTGAGCATGGAAGTAGTAATGTTTTATTTTTTTACTTAAGGGTAATATAGGCCTTC
Found at i:59247019 original size:25 final size:25
Alignment explanation
Indices: 59246943--59247060 Score: 75
Period size: 25 Copynumber: 4.8 Consensus size: 25
59246933 GTATCGGTAT
* * *
59246943 GCTCTTACGAGCT-ATAATCAGTAA
1 GCTCATACGAGCTAAGAATCAATAA
* * * * *
59246967 GCTCTTGCGAGCTGAGTAAT-GATCA
1 GCTCATACGAGCTAAG-AATCAATAA
* *
59246992 GCTCATGCTAGCTAA-ATATCAATAA
1 GCTCATACGAGCTAAGA-ATCAATAA
*
59247017 GCTCATACGAGCTAAGAATCGATAA
1 GCTCATACGAGCTAAGAATCAATAA
59247042 GCTC-TCACGAGCTAA-AATC
1 GCTCAT-ACGAGCTAAGAATC
59247061 GGTAACCCTA
Statistics
Matches: 75, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
23 1 0.01
24 19 0.25
25 51 0.68
26 4 0.05
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTAAGAATCAATAA
Found at i:59255313 original size:57 final size:57
Alignment explanation
Indices: 59255198--59255313 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
59255188 TTTACGTCCT
* * * * *
59255198 GTATCACGTGGCCCGGCTCAAGGAGTTTCGGAGAAAACGAGCGGGATTTGGGCCGGC
1 GTATCACGTGGCCCGACTCAAGGAGTATCAGAGAAAACGAACGGGATTAGGGCCGGC
*
59255255 GTATCACGTGGCCCGACTCAAGGAGTATCAGAGAAAACGAACAGGG-TTAGGGCTGGC
1 GTATCACGTGGCCCGACTCAAGGAGTATCAGAGAAAACGAAC-GGGATTAGGGCCGGC
59255312 GT
1 GT
59255314 CCCCTGGAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 49 0.94
58 3 0.06
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (57 bp):
GTATCACGTGGCCCGACTCAAGGAGTATCAGAGAAAACGAACGGGATTAGGGCCGGC
Found at i:59264468 original size:38 final size:37
Alignment explanation
Indices: 59264378--59264518 Score: 190
Period size: 36 Copynumber: 4.0 Consensus size: 37
59264368 TCACTATTTT
59264378 GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGTAAA
1 GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGTAAA
*
59264415 -TCTGAGTCATAAAAGTAAGTTTGTTTGTTATGTGAAA
1 GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGT-AAA
*
59264452 GTATGAGTCAAAAAAGTAAGTTTGTTTG---T-T--A
1 GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGTAAA
*
59264483 -TATGAGTCATAAAAGTAAGTTTGTTTATTATGTAAA
1 GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGTAAA
59264519 TGAGATTCCT
Statistics
Matches: 91, Mismatches: 5, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
30 25 0.27
31 1 0.01
33 1 0.01
34 2 0.02
35 1 0.01
36 33 0.36
37 3 0.03
38 25 0.27
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (37 bp):
GTATGAGTCATAAAAGTAAGTTTGTTTGTTATGTAAA
Found at i:59264489 original size:30 final size:30
Alignment explanation
Indices: 59264453--59264513 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
59264443 TATGTGAAAG
*
59264453 TATGAGTCAAAAAAGTAAGTTTGTTTGTTA
1 TATGAGTCAAAAAAGTAAGTTTGTTTATTA
*
59264483 TATGAGTCATAAAAGTAAGTTTGTTTATTA
1 TATGAGTCAAAAAAGTAAGTTTGTTTATTA
59264513 T
1 T
59264514 GTAAATGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.43
Consensus pattern (30 bp):
TATGAGTCAAAAAAGTAAGTTTGTTTATTA
Found at i:59265288 original size:25 final size:27
Alignment explanation
Indices: 59265254--59265304 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
59265244 ATATTATTAA
59265254 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
59265279 TATAATATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
59265305 ACATTAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 9 0.38
26 3 0.12
27 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:59273403 original size:25 final size:27
Alignment explanation
Indices: 59273369--59273419 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
59273359 ATATTATTAA
59273369 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
59273394 TATAATATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
59273420 ACATTAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 9 0.38
26 3 0.12
27 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:59273776 original size:27 final size:27
Alignment explanation
Indices: 59273746--59273797 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
59273736 ATTTGAGTAA
*
59273746 TTAGGG-CTAAATTGAAAAAATAAATTT
1 TTAGGGACTAAAATG-AAAAATAAATTT
*
59273773 TTAGGGACTAAAATGCAAAATAAAT
1 TTAGGGACTAAAATGAAAAATAAAT
59273798 GAAATGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (27 bp):
TTAGGGACTAAAATGAAAAATAAATTT
Found at i:59276523 original size:22 final size:24
Alignment explanation
Indices: 59276495--59276541 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
59276485 CCACATGGAA
*
59276495 ATTAAATTTT-TT-TTAAAAATAT
1 ATTAAATTTTATTGATAAAAATAT
59276517 ATTAAATTTTATTGATAAAAATAT
1 ATTAAATTTTATTGATAAAAATAT
59276541 A
1 A
59276542 AAAATATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 2 0.09
24 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
ATTAAATTTTATTGATAAAAATAT
Found at i:59276736 original size:19 final size:18
Alignment explanation
Indices: 59276673--59276736 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 18
59276663 AATTTTAAAT
59276673 TTTAAAAATTCAAAATAATA
1 TTTAAAAATT-AAAAT-ATA
* * * *
59276693 TATAAAAATTGAAATTTT
1 TTTAAAAATTAAAATATA
59276711 TTATAAAAATTAAAAATATA
1 TT-TAAAAATT-AAAATATA
59276731 TTTAAA
1 TTTAAA
59276737 TTTCAAGTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
18 2 0.06
19 16 0.47
20 16 0.47
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TTTAAAAATTAAAATATA
Found at i:59276953 original size:18 final size:17
Alignment explanation
Indices: 59276914--59276960 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
59276904 AATTTTATTT
*
59276914 TTATA-ATTTTTTATAA
1 TTATATATTTTTTCTAA
59276930 TT-TATATTTTTTCTAGA
1 TTATATATTTTTTCTA-A
*
59276947 TTATATATATTTTC
1 TTATATATTTTTTC
59276961 CGAATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 2 0.08
16 11 0.42
17 3 0.12
18 10 0.38
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (17 bp):
TTATATATTTTTTCTAA
Found at i:59277378 original size:23 final size:23
Alignment explanation
Indices: 59277352--59277396 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
59277342 GTACCTGAAC
59277352 TCTTTATAAATTTT-AGAATTCAG
1 TCTTT-TAAATTTTCAGAATTCAG
* *
59277375 TCTTTTAATTTTTCAGATTTCA
1 TCTTTTAAATTTTCAGAATTCA
59277397 ATTAACATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.53
Consensus pattern (23 bp):
TCTTTTAAATTTTCAGAATTCAG
Found at i:59277610 original size:29 final size:28
Alignment explanation
Indices: 59277555--59277611 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
59277545 ATTTTATTAA
59277555 TTTAAAAGAAAAATAAAGAGATTAAATT
1 TTTAAAAGAAAAATAAAGAGATTAAATT
*
59277583 TTTAAAAGTAAATATATAAG-GATTAAATT
1 TTTAAAAG-AAAAATA-AAGAGATTAAATT
59277612 GTAAATTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 8 0.31
29 15 0.58
30 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (28 bp):
TTTAAAAGAAAAATAAAGAGATTAAATT
Found at i:59277616 original size:28 final size:26
Alignment explanation
Indices: 59277553--59277616 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 26
59277543 AAATTTTATT
59277553 AATTTAAAAGAAAAATAAAGAGATTA
1 AATTTAAAAGAAAAATAAAGAGATTA
*
59277579 AATTTTTAAAAGTAAATATATAAG-GATTA
1 AA--TTTAAAAG-AAAAATA-AAGAGATTA
59277608 AATTGTAAA
1 AATT-TAAA
59277617 TTTGTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 2 0.06
27 2 0.06
28 12 0.38
29 13 0.41
30 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.31
Consensus pattern (26 bp):
AATTTAAAAGAAAAATAAAGAGATTA
Found at i:59278122 original size:3 final size:3
Alignment explanation
Indices: 59278114--59278147 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
59278104 CGTTTCATCA
59278114 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
59278148 GGTACTCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:59279669 original size:45 final size:45
Alignment explanation
Indices: 59279618--59279703 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
59279608 TTCATCATCT
*
59279618 GAAATTGTGAACACGTCAATGGGATTCGGATTTGGGGTACCTTCA
1 GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACCTTCA
* *
59279663 GAAATTGTGACCGCGTCAATGGGATTCGGATTTAGGGTACC
1 GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACC
59279704 CAAAGCTTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (45 bp):
GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACCTTCA
Found at i:59285688 original size:5 final size:6
Alignment explanation
Indices: 59285672--59285707 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
59285662 TAATTTAGTC
* *
59285672 ATTTTT ATTTTT ATTTTT ATTTTT AGTTTA ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
59285708 GCATTCTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:59291344 original size:27 final size:27
Alignment explanation
Indices: 59291276--59291375 Score: 80
Period size: 26 Copynumber: 3.6 Consensus size: 27
59291266 ATGAGGATCA
*
59291276 TTTATTTTA-TTTGTTTTCTTTTTAGT
1 TTTATTTTATTTTCTTTTCTTTTTAGT
* *
59291302 TTTCTTTTCTTTTCTTTTC-TTTT-GT
1 TTTATTTTATTTTCTTTTCTTTTTAGT
* *
59291327 TTTATGTTTATTTCTCTTCTTAGTTGTTTTGT
1 TTTAT-TTTATTT-TCTT-TT-CTT-TTTAGT
59291359 TTTATTTTTATTTTCTT
1 TTTA-TTTTATTTTCTT
59291376 GTACTTCTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
25 6 0.10
26 17 0.29
27 12 0.20
28 2 0.03
30 1 0.02
31 7 0.12
32 13 0.22
33 1 0.02
ACGTcount: A:0.08, C:0.09, G:0.07, T:0.76
Consensus pattern (27 bp):
TTTATTTTATTTTCTTTTCTTTTTAGT
Found at i:59301699 original size:7 final size:7
Alignment explanation
Indices: 59301687--59301712 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
59301677 TTTGGTGGTG
59301687 CTCATCA
1 CTCATCA
59301694 CTCATCA
1 CTCATCA
59301701 CTCATCA
1 CTCATCA
59301708 CTCAT
1 CTCAT
59301713 TCTTTTACTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.42, G:0.00, T:0.31
Consensus pattern (7 bp):
CTCATCA
Found at i:59305541 original size:97 final size:95
Alignment explanation
Indices: 59305305--59305624 Score: 410
Period size: 96 Copynumber: 3.3 Consensus size: 95
59305295 GTTTTTAGAT
* * * * * * *
59305305 TTTAGGGTTTTAAGGAAAAATTTAAACAAATAAGGGTTTAGAGTTTCTTAATTAAATTAATTATA
1 TTTAGGGTTTTAAGGAAAAA-ATAAAAAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATA
*
59305370 AATTTT-AAAAAATTAGATTAGGGTTTAGTG
65 AATTTTAAAAAAATTAGATTAGGGTTTAGTA
** *
59305400 TTTATGTTTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTA-GGGTTTTAAGGAAAAAA-TAAAAAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
* *
59305465 AATTTTTTTAAAAAAATTAGATTAGAGTTTAGTA
64 AA--ATTTTAAAAAAATTAGATTAGGGTTTAGTA
*
59305499 TTTAGGGTTTTAAGGAAAAAATAAAAAAATTAGGGTTTAGGGTTGCTTGAGTAAATTAATTATAA
1 TTTAGGGTTTTAAGGAAAAAATAAAAAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
* *
59305564 ATTTAAAAAAAATTAGATTGGGGTTTAGTA
66 ATTTTAAAAAAATTAGATTAGGGTTTAGTA
59305594 TTTAGGGTTTTTAA-GAAAAAATCAAATAAAA
1 TTTAGGG-TTTTAAGGAAAAAAT-AAA-AAAA
59305625 CTAGTTGTTA
Statistics
Matches: 197, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
95 45 0.23
96 61 0.31
97 46 0.23
98 19 0.10
99 26 0.13
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (95 bp):
TTTAGGGTTTTAAGGAAAAAATAAAAAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAA
ATTTTAAAAAAATTAGATTAGGGTTTAGTA
Found at i:59309909 original size:41 final size:41
Alignment explanation
Indices: 59309837--59310057 Score: 311
Period size: 41 Copynumber: 5.4 Consensus size: 41
59309827 CTTTCGGGGT
* * *
59309837 TTTAGCAGCGTTTTTTGAGAAAGCG-CGCTAATGCTCAGGGC
1 TTTAGCGGCG-TTTTTGGGAAAGCGCCGCTAATGATCAGGGC
*
59309878 TTTAGCGGCGTTTTTGGGAAAGCGCCTCTAATGATCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGATCAGGGC
* *
59309919 TTTAGTGGCGTTTTTGGGAAAGCGCCGCTAATAATCAGGGC
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGATCAGGGC
*
59309960 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGATCAGGGA
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGATCAGGGC
* ** *
59310001 TTTAGCGGCGTTTTT-GAAATAGCGCCGCTAATTCTCATGGC
1 TTTAGCGGCGTTTTTGGGAA-AGCGCCGCTAATGATCAGGGC
59310042 TTTAGCGGCGTTTTTG
1 TTTAGCGGCGTTTTTG
59310058 AATTAGTGCC
Statistics
Matches: 162, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 16 0.10
41 146 0.90
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGATCAGGGC
Found at i:59310109 original size:40 final size:40
Alignment explanation
Indices: 59309837--59310113 Score: 188
Period size: 41 Copynumber: 6.8 Consensus size: 40
59309827 CTTTCGGGGT
* * *
59309837 TTTAGCAGCGTTTTTTGAGAA-AGCG-CGCTAATGCTCAGGGC
1 TTTAGCGGCG-TTTTTGA-AATAGCGCCGCTAATTCTCA-TGC
* * ** *
59309878 TTTAGCGGCGTTTTTGGGAA-AGCGCCTCTAATGATCAGGGC
1 TTTAGCGGCGTTTTT-GAAATAGCGCCGCTAATTCTCA-TGC
* * ** *
59309919 TTTAGTGGCGTTTTTGGGAA-AGCGCCGCTAATAATCAGGGC
1 TTTAGCGGCGTTTTT-GAAATAGCGCCGCTAATTCTCA-TGC
* ** * *
59309960 TTTAGCGGCGTTTTTGGGAA-AGCGCCGCTAATGATCAGGGA
1 TTTAGCGGCGTTTTT-GAAATAGCGCCGCTAATTCTCA-TGC
59310001 TTTAGCGGCGTTTTTGAAATAGCGCCGCTAATTCTCATGGC
1 TTTAGCGGCGTTTTTGAAATAGCGCCGCTAATTCTCAT-GC
* * *
59310042 TTTAGCGGCGTTTTTGAATTAGTGCCGCTAATTCTCTAT-T
1 TTTAGCGGCGTTTTTGAAATAGCGCCGCTAATTCTC-ATGC
* * * *
59310082 TTTAGTGGCATTTTTTAAAAAGCGCCGCTAAT
1 TTTAGCGGCGTTTTTGAAATAGCGCCGCTAAT
59310114 GCTTAGGAAT
Statistics
Matches: 207, Mismatches: 24, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
40 40 0.19
41 165 0.80
42 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGAAATAGCGCCGCTAATTCTCATGC
Found at i:59311103 original size:14 final size:14
Alignment explanation
Indices: 59311084--59311116 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
59311074 GATTATGAAA
59311084 TAAGGTTT-GGGGTT
1 TAAGGTTTAGGGG-T
59311098 TAAGGTTTAGGGGT
1 TAAGGTTTAGGGGT
59311112 TAAGG
1 TAAGG
59311117 GATAGGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.36
Consensus pattern (14 bp):
TAAGGTTTAGGGGT
Found at i:59316271 original size:18 final size:18
Alignment explanation
Indices: 59316248--59316286 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
59316238 CATGAGCTTT
* *
59316248 AGCGGCGTTTGTGGGAAA
1 AGCGGCGATTGTGGCAAA
59316266 AGCGGCGATTGTGGCAAA
1 AGCGGCGATTGTGGCAAA
59316284 AGC
1 AGC
59316287 ACCGCTAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.41, T:0.18
Consensus pattern (18 bp):
AGCGGCGATTGTGGCAAA
Found at i:59316328 original size:43 final size:43
Alignment explanation
Indices: 59316266--59316447 Score: 240
Period size: 43 Copynumber: 4.2 Consensus size: 43
59316256 TTGTGGGAAA
* * * *
59316266 AGCGGCGATTGTGGCAAAAGCACCGCTAAAGTTACTT-GTCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-CTTGGTCTTT
* * * *
59316309 AGCGGCGCTTGTGGGAAAAGCGTCGCTAAAGGTCCTGGTATTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
*
59316352 AGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGGTCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
* * *
59316395 AGCAGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCTTGGCCTTT
1 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
59316438 AGCGGCGTTT
1 AGCGGCGTTT
59316448 TTACAAAAAA
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
42 2 0.02
43 119 0.98
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.27
Consensus pattern (43 bp):
AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTT
Found at i:59316456 original size:86 final size:87
Alignment explanation
Indices: 59316281--59316469 Score: 238
Period size: 86 Copynumber: 2.2 Consensus size: 87
59316271 CGATTGTGGC
* * * *
59316281 AAAAGCACCGCTAAAGTTACTTGTCTTTAGCGGCGCTTGTGGGAAAAGCGTCGCTAAAGGTCCTG
1 AAAAGCGCCGCTAAAGGTACTTGTCTTTAGCAGCGCTTGTGGGAAAAGCGCCGCTAAAGGTCCTG
* **
59316346 GTATTTAGCGGCGTTTGT-GGA
66 GCATTTAGCGGCGTTTGTACAA
* * *
59316367 AAAAGCGCCGCTAAAGGT-CTTGGTCTTTAGCAGCGTTTGTGGGAAAAGTGCCGCTAAAGGTCTT
1 AAAAGCGCCGCTAAAGGTACTT-GTCTTTAGCAGCGCTTGTGGGAAAAGCGCCGCTAAAGGTCCT
* *
59316431 GGCCTTTAGCGGCGTTTTTACAA
65 GGCATTTAGCGGCGTTTGTACAA
*
59316454 AAAATCGCCGCTAAAG
1 AAAAGCGCCGCTAAAG
59316470 TTAGCGACGC
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
85 3 0.03
86 69 0.78
87 16 0.18
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (87 bp):
AAAAGCGCCGCTAAAGGTACTTGTCTTTAGCAGCGCTTGTGGGAAAAGCGCCGCTAAAGGTCCTG
GCATTTAGCGGCGTTTGTACAA
Found at i:59318412 original size:21 final size:21
Alignment explanation
Indices: 59318388--59318427 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
59318378 CAAAATAACG
*
59318388 TAGTTTTGCCTTTTAACTTAA
1 TAGTTTTGACTTTTAACTTAA
59318409 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
59318428 TAGAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
TAGTTTTGACTTTTAACTTAA
Found at i:59318545 original size:31 final size:31
Alignment explanation
Indices: 59318510--59318568 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
59318500 GTGTAATTCA
*
59318510 TATTCGAGGTAAACCAAAAAACTTAATTTTT
1 TATTCAAGGTAAACCAAAAAACTTAATTTTT
* * * *
59318541 TATTCAAGTTGATCCAAATAACTTAATT
1 TATTCAAGGTAAACCAAAAAACTTAATT
59318569 AACTCAAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (31 bp):
TATTCAAGGTAAACCAAAAAACTTAATTTTT
Found at i:59322410 original size:24 final size:24
Alignment explanation
Indices: 59322383--59322430 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
59322373 CATATAATCA
*
59322383 CATATATACACATAAATTAAATTC
1 CATAAATACACATAAATTAAATTC
59322407 CATAAATACACATAAATTAAATTC
1 CATAAATACACATAAATTAAATTC
59322431 AATCTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (24 bp):
CATAAATACACATAAATTAAATTC
Found at i:59323558 original size:41 final size:41
Alignment explanation
Indices: 59323512--59323591 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
59323502 CTTTCAATCC
*
59323512 AAGTAAATTCGCTTACCCGAAACCTAATTAACTACACAAAT
1 AAGTAAATTCGCTTAACCGAAACCTAATTAACTACACAAAT
59323553 AAGTAAATTCGCTTAACCGAAACCTAATTAACTACACAA
1 AAGTAAATTCGCTTAACCGAAACCTAATTAACTACACAA
59323592 CTAAATTCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (41 bp):
AAGTAAATTCGCTTAACCGAAACCTAATTAACTACACAAAT
Found at i:59338447 original size:40 final size:40
Alignment explanation
Indices: 59338403--59338716 Score: 370
Period size: 40 Copynumber: 7.7 Consensus size: 40
59338393 ACCACAAATT
* *
59338403 TTATCTCCCTAAGTAGTAGTGGAGCAGATCGCCTCAAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTC
*
59338443 TTATCTCCCTAAGTAGTAGTGGAGCAGA-CAGAAC-CACAGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATC-G-ACTCA-AG-TC
*
59338485 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAACGC-AGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATC-G--ACTCAAG-TC
*
59338527 TTATCTCCCTAAACAGTAGTGGAGCAGATCG-CTTCAAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAC-TCAAGTC
* *
59338567 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGCCTCAAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTC
* * *
59338607 TTATCTCCCTAAGTAATAGTGGAGCAGA-CAGAATCATAGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATC-GACTCA-AG-TC
59338649 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTC
* *
59338689 TTATCTCCCGAAGCAGTAGTGGAACAGA
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA
59338717 CAGAACCACA
Statistics
Matches: 244, Mismatches: 16, Indels: 28
0.85 0.06 0.10
Matches are distributed among these distances:
39 3 0.01
40 127 0.52
41 10 0.04
42 98 0.40
43 5 0.02
44 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (40 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTC
Found at i:59338494 original size:82 final size:82
Alignment explanation
Indices: 59338390--59338743 Score: 457
Period size: 82 Copynumber: 4.3 Consensus size: 82
59338380 GGGATGGATT
* * * *
59338390 AGAACCACAAATTTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAA
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTCTTATCTCCCTAA
*
59338455 GTAGTAGTGGAGCAGAC
66 GCAGTAGTGGAGCAGAC
*
59338472 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAACGC-AGATCTTATCTCC
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G--ACTCAAG-TCTTATCTCC
*
59338535 CTAAACAGTAGTGGAGCAGATC
62 CTAAGCAGTAGTGGAGCAGA-C
*** * *
59338557 -GCTTCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCCTCAAGTCTTATCTCCCTAA
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTCTTATCTCCCTAA
* *
59338619 GTAATAGTGGAGCAGAC
66 GCAGTAGTGGAGCAGAC
* * *
59338636 AGAATCATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTCTTATCTCCCGAA
1 AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTCTTATCTCCCTAA
*
59338701 GCAGTAGTGGAACAGAC
66 GCAGTAGTGGAGCAGAC
*
59338718 AGAACCACAGATCTTGTCTCCCTAAG
1 AGAACCACAGATCTTATCTCCCTAAG
59338744 AAGTTGCAGT
Statistics
Matches: 235, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
79 1 0.00
80 33 0.14
81 5 0.02
82 157 0.67
83 5 0.02
84 33 0.14
85 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (82 bp):
AGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGACTCAAGTCTTATCTCCCTAA
GCAGTAGTGGAGCAGAC
Found at i:59345445 original size:43 final size:43
Alignment explanation
Indices: 59345351--59345446 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
59345341 AGAAATAAAC
* *
59345351 AACCTTTAGCGGCGCTTCTCCCACAAACGCCACTACAGATCAT
1 AACCTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAGACCAT
* * * * * *
59345394 GACTTTTAGCGGTGCTT-TACCTACAAACGCCGCTAAAGGCCAT
1 AACCTTTAGCGGCGCTTCT-CCCACAAACGCCACTAAAGACCAT
59345437 AACCTTTAGC
1 AACCTTTAGC
59345447 ACCGTTTTAC
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (43 bp):
AACCTTTAGCGGCGCTTCTCCCACAAACGCCACTAAAGACCAT
Found at i:59348045 original size:20 final size:20
Alignment explanation
Indices: 59348020--59348057 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
59348010 AGTGTATGAA
*
59348020 TATATATATTATAAAAAATG
1 TATATATATTAGAAAAAATG
59348040 TATATATATTAGAAAAAA
1 TATATATATTAGAAAAAA
59348058 ATATGCTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TATATATATTAGAAAAAATG
Found at i:59348083 original size:3 final size:3
Alignment explanation
Indices: 59348075--59348113 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
59348065 TGCCTATAGA
59348075 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
59348114 GATGCAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:59351841 original size:27 final size:26
Alignment explanation
Indices: 59351806--59351861 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
59351796 GTGATTTTCG
59351806 TTTTGCATT-TCTTTTCT-TTTTTATCTT
1 TTTTGCATTGT-TTTT-TATTTTTAT-TT
*
59351833 TTTTTCATTGTTTTTTATTTTTATTT
1 TTTTGCATTGTTTTTTATTTTTATTT
59351859 TTT
1 TTT
59351862 AGAAAAACAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 6 0.23
27 19 0.73
28 1 0.04
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (26 bp):
TTTTGCATTGTTTTTTATTTTTATTT
Found at i:59352881 original size:13 final size:12
Alignment explanation
Indices: 59352854--59352926 Score: 56
Period size: 14 Copynumber: 5.4 Consensus size: 12
59352844 ATTTTATTGT
59352854 TTTATATTTTTA
1 TTTATATTTTTA
*
59352866 TTTATCTTTATTA
1 TTTATATTT-TTA
59352879 TTTATTATTTTATA
1 TTTA-TATTTT-TA
*
59352893 TTGTTATCATTATTA
1 -T-TTAT-ATTTTTA
59352908 TTTTATTATTTTTA
1 -TTTA-TATTTTTA
59352922 TTTAT
1 TTTAT
59352927 TTATTCTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
12 9 0.18
13 12 0.24
14 15 0.30
15 7 0.14
16 7 0.14
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:59352884 original size:17 final size:17
Alignment explanation
Indices: 59352858--59352931 Score: 54
Period size: 17 Copynumber: 4.6 Consensus size: 17
59352848 TATTGTTTTA
59352858 TATT-TTTATTTATCTT
1 TATTATTTATTTATCTT
59352874 TATTATTTA-TTAT-TT
1 TATTATTTATTTATCTT
* *
59352889 TA-TA-TT-GTTATCAT
1 TATTATTTATTTATCTT
*
59352903 TATTATTT-TATTATTTT
1 TATTATTTAT-TTATCTT
59352920 TATTTATTTATT
1 TA-TTATTTATT
59352932 CTCATTATTG
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
13 6 0.13
14 5 0.11
15 6 0.13
16 10 0.22
17 11 0.24
18 7 0.15
19 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (17 bp):
TATTATTTATTTATCTT
Found at i:59352890 original size:33 final size:37
Alignment explanation
Indices: 59352867--59352949 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 37
59352857 ATATTTTTAT
59352867 TTATCTTTATTATTTATTATTTTATATTGTTATCATTA
1 TTAT-TTTATTATTTATTATTTTATATTGTTATCATTA
* *
59352905 TTATTTTATTATTT-TTA-TTTAT-TTATTCTCATTA
1 TTATTTTATTATTTATTATTTTATATTGTTATCATTA
*
59352939 TTGTTGTTATT
1 TTATT-TTATT
59352950 GTCTTATTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 14 0.34
35 10 0.24
36 3 0.07
37 10 0.24
38 4 0.10
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.69
Consensus pattern (37 bp):
TTATTTTATTATTTATTATTTTATATTGTTATCATTA
Found at i:59352899 original size:29 final size:29
Alignment explanation
Indices: 59352847--59352923 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 29
59352837 TACATGGATT
* *
59352847 TTATTGTTTTA-TATTTTTA-T-TTATCT
1 TTATTATTTTATTATTTTTATTGTTATCA
59352873 TTATTA-TTTATTATTTTATATTGTTATCA
1 TTATTATTTTATTATTTT-TATTGTTATCA
59352902 TTATTATTTTATTATTTTTATT
1 TTATTATTTTATTATTTTTATT
59352924 TATTTATTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
25 4 0.09
26 11 0.25
27 2 0.05
28 1 0.02
29 15 0.34
30 11 0.25
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (29 bp):
TTATTATTTTATTATTTTTATTGTTATCA
Found at i:59352908 original size:22 final size:23
Alignment explanation
Indices: 59352880--59352943 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
59352870 TCTTTATTAT
59352880 TTATTATTTTA-TATTGTTATCA
1 TTATTATTTTATTATTGTTATCA
*
59352902 TTATTATTTTATTATTTTTAT--
1 TTATTATTTTATTATTGTTATCA
*
59352923 TTATTTATTCTCATTATTGTT
1 TTA-TTATT-TTATTATTGTT
59352944 GTTATTGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.08
22 16 0.44
23 17 0.47
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (23 bp):
TTATTATTTTATTATTGTTATCA
Found at i:59357724 original size:13 final size:13
Alignment explanation
Indices: 59357694--59357731 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
59357684 AAAAAAGGGG
59357694 GAAAAAG-GAAAA
1 GAAAAAGAGAAAA
59357706 -AAAAAGAGAAAA
1 GAAAAAGAGAAAA
*
59357718 GAAAAAGAAAAAA
1 GAAAAAGAGAAAA
59357731 G
1 G
59357732 GAGAGGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 12 0.52
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
GAAAAAGAGAAAA
Found at i:59359098 original size:50 final size:49
Alignment explanation
Indices: 59359036--59359712 Score: 234
Period size: 50 Copynumber: 13.6 Consensus size: 49
59359026 TTTGCAATTA
* *
59359036 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGTGATGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTC-CTGGAGATGCAGTGG
* * * * ** * * *
59359086 AACAGATTGAAGCTACAATGGTGAATCTCACTTCCCCGACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGA-TGCAGTGG
* * * * *
59359135 AAAAGATTG-AGCCACAACGGCAAATCTTACTTTCCCAGGCGGTGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGAATCTCAC-TT-CCTGGAGATGCAGTGG
* * * * * * *
59359185 AATAGATTGAAGCTACAACGGCAAATCTCACTTCCTCGACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGA-TGCAGTGG
* * * * *
59359234 CAAAGATTTAAGCCACAATGGC-AGATCTTACTTTCCCAGGAGATGCAGTGG
1 AAAAGATTGAAGCCACAACGGCGA-ATCTCAC-TT-CCTGGAGATGCAGTGG
* * * * * * * * *
59359285 AAGAGATTGAAACTACGACGGTGAATCTCACTTCCCTGGCA-TTACAATTG
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTT-CCTGG-AGATGCAGTGG
* * * * **
59359335 AAAAAATTGAAGCCACAACGGCGAATCTTATTTCCTAGGCGATGCAGCAG
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCT-GGAGATGCAGTGG
* *** * * * **
59359385 AACAA-ATTGAAGCTACAACGGCGAATCTCACTTCCCCAACATTACAATTT
1 AA-AAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGA-TGCAGTGG
* * * * * *
59359435 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGTAGCGG
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTT-CCTGGAGATGCAGTGG
* * * * * ** * * * **
59359485 AACAGATTGAAGCTACGATGGTGAATCTCACTTCCCCGAAATTGTAATTT
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGA-TGCAGTGG
* * * * * * *
59359535 AAAAGATTGAGGCCACAACGTC-AGATCTTACTTCCCAGGCGATACAGCGG
1 AAAAGATTGAAGCCACAACGGCGA-ATCTCACTT-CCTGGAGATGCAGTGG
* * * * ** ** * * **
59359585 AACATATTGAAGCTACGACGGCGAATCTCGTTTCCCCGACATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGA-TGCAGTGG
* * * * * * **
59359635 AAAAGATTGAAGCTACAATGGCGAATCTTACTTTCCAGGCGGTGCAACGG
1 AAAAGATTGAAGCCACAACGGCGAATCTCAC-TTCCTGGAGATGCAGTGG
* * *
59359685 AACAGATTAAAGCTACAACGGCGAATCT
1 AAAAGATTGAAGCCACAACGGCGAATCT
59359713 TGTTTCCCCG
Statistics
Matches: 436, Mismatches: 167, Indels: 48
0.67 0.26 0.07
Matches are distributed among these distances:
48 17 0.04
49 59 0.14
50 299 0.69
51 60 0.14
52 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (49 bp):
AAAAGATTGAAGCCACAACGGCGAATCTCACTTCCTGGAGATGCAGTGG
Found at i:59359312 original size:100 final size:100
Alignment explanation
Indices: 59359027--59359826 Score: 826
Period size: 100 Copynumber: 8.0 Consensus size: 100
59359017 ACACCATAGT
* * * *
59359027 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCTCTGGTGATGCAGTGGAACAG
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAG
* *
59359091 ATTGAAGCTACAATGGTGAATCTCACTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * *
59359127 TTGCAATTAAAAGATTG-AGCCACAACGGCAAATCTTACTTTCCCAGGCGGTGCAGTGGAATAGA
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAGA
* *
59359191 TTGAAGCTACAACGGCAAATCTCACTTCCTCGACA
66 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * *
59359226 TTGCAATTCAAAGATTTAAGCCACAATGGC-AGATCTTACTTTCCCAGGAGATGCAGTGGAAGAG
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGA-ATCTTACTTTCCCAGGCGATGCAGCGGAACAG
* * * * *
59359290 ATTGAAACTACGACGGTGAATCTCACTTCCCTGGCA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * *
59359326 TTACAATTGAAAAAATTGAAGCCACAACGGCGAATCTTA-TTTCCTAGGCGATGCAGCAGAACAA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAG
*
59359390 ATTGAAGCTACAACGGCGAATCTCACTTCCCCAACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * *
59359426 TTACAATTTAAAAGATTGAAGCCACAACGGTGAATCTTAC-TTCCCAGGCGATGTAGCGGAACAG
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAG
* * * *
59359490 ATTGAAGCTACGATGGTGAATCTCACTTCCCCGAAA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * *
59359526 TTGTAATTTAAAAGATTGAGGCCACAACGTC-AGATCTTAC-TTCCCAGGCGATACAGCGGAACA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGA-ATCTTACTTTCCCAGGCGATGCAGCGGAACA
* * **
59359589 TATTGAAGCTACGACGGCGAATCTCGTTTCCCCGACA
64 GATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * *
59359626 TTGCAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTT-CCAGGCGGTGCAACGGAACAG
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAG
* ***
59359690 ATTAAAGCTACAACGGCGAATCTTGTTTCCCCGACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
**** * ** * * * ** * *
59359726 TTATGGTTAAATAGATTGAAGCTACAACAACGAATCTTAC-TTCCCTGGCGGTGTAATGAAATAG
1 TTGCAATTAAA-AGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAG
* * * * *
59359790 ATTGAAGCTACGACGACGAATCTAATTTCTCCGACA
65 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
59359826 T
1 T
59359827 CGCAGTTCAA
Statistics
Matches: 593, Mismatches: 94, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
98 20 0.03
99 84 0.14
100 459 0.77
101 29 0.05
102 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTTCCCAGGCGATGCAGCGGAACAGA
TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
Done.