Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_227
Parameters: 2 7 7 80 10 50 1000
Length:  123712

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8127--8166
19
2.1
19
100
0
80
45
42
0
12
1.42
14769--14888
12
10.0
12
71
19
72
8
16
3
71
1.24
14769--14805
14
2.7
14
84
15
51
8
16
0
75
1.02
14769--14808
15
2.9
15
82
14
50
7
17
0
75
1.03
14767--14874
6
17.7
6
71
9
76
6
16
3
73
1.19
15918--15960
10
3.9
11
90
6
52
6
4
4
83
0.89
15919--15960
11
3.8
11
90
6
59
7
2
4
85
0.80
15929--15967
13
3.2
13
92
7
64
12
0
7
79
0.93
27444--27491
14
3.4
14
85
0
60
43
6
31
18
1.75
28712--28808
30
3.2
30
77
2
106
28
15
26
28
1.96
36109--36155
20
2.3
20
81
0
58
23
12
34
29
1.92
40025--40071
20
2.3
20
81
0
58
23
12
34
29
1.92
41742--41817
18
4.6
18
66
24
58
14
23
1
60
1.42
49649--50813
581
2.0
582
96
0
2163
34
14
23
28
1.94
51560--51605
20
2.3
20
80
0
56
23
13
32
30
1.93
54779--54884
48
2.2
48
85
9
137
14
24
1
59
1.45
57517--57563
20
2.3
20
81
0
58
23
12
34
29
1.92
58429--58475
20
2.3
20
81
0
58
23
12
34
29
1.92
70024--70054
11
2.7
11
95
5
53
77
0
9
12
0.99
70877--70910
15
2.3
15
89
0
50
35
29
32
2
1.73
75174--75209
9
3.8
9
86
13
54
8
2
2
86
0.77
75567--75609
14
3.1
14
86
3
52
44
2
37
16
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79111--79139
12
2.4
12
100
0
58
79
0
6
13
0.93
80195--80236
18
2.3
18
87
0
57
71
4
16
7
1.26
83861--83893
12
2.6
13
90
4
50
75
3
3
18
1.06
90913--90952
14
2.9
14
88
0
53
50
7
32
10
1.64
95195--95234
12
3.2
13
86
13
57
75
7
5
12
1.18
95202--95261
12
5.2
12
75
20
56
73
6
11
8
1.25
96175--96245
37
1.9
37
86
11
101
76
2
18
2
1.04
96185--96234
6
8.2
6
83
14
50
76
2
20
2
0.99
96295--96325
12
2.6
12
100
0
62
45
12
16
25
1.83
96415--96522
6
17.7
6
69
10
67
72
3
17
6
1.21
96483--96520
13
2.8
13
82
17
51
73
0
18
7
1.06
96526--96557
12
2.7
12
95
0
55
59
0
21
18
1.38
104595--104700
48
2.2
48
85
9
137
14
24
1
59
1.45
105718--105785
24
3.0
22
83
14
77
4
16
2
76
1.07
105718--105778
22
2.7
23
82
17
74
4
18
3
73
1.14
105725--105785
32
2.0
30
83
6
77
3
14
3
78
1.00
105870--105898
10
2.7
11
94
5
51
6
3
6
82
0.93
114661--114712
23
2.2
24
83
10
63
61
3
23
11
1.46
119305--119361
12
4.8
12
81
10
64
77
1
7
14
1.06

Tables:   1

The End!