Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_228
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123048
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Found at i:51 original size:36 final size:34
Alignment explanation
Indices: 4--108 Score: 115
Period size: 36 Copynumber: 3.0 Consensus size: 34
1 TGC
4 CGATGGTGCCGAGGCTCCCACG-CCAAGGCCTAGGTT
1 CGATGGTGCCGAGGCTCCCACGACC--GGCCTAGG-T
*
40 CGATGGTGCCGAGGCTCTTGCACGACCGGCCTAGGT
1 CGATGGTGCCGAGGCTC--CCACGACCGGCCTAGGT
* * *
76 CGATGGTCCCGAGGCT-CCGCGACAGGCCTAGGT
1 CGATGGTGCCGAGGCTCCCACGACCGGCCTAGGT
109 GCGGGTGGCG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
33 14 0.23
36 33 0.54
37 8 0.13
38 4 0.07
39 2 0.03
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.17
Consensus pattern (34 bp):
CGATGGTGCCGAGGCTCCCACGACCGGCCTAGGT
Found at i:5809 original size:13 final size:13
Alignment explanation
Indices: 5791--5818 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
5781 CGCTGCTGCT
5791 ACGCTACCAGGCG
1 ACGCTACCAGGCG
5804 ACGCTACCAGGCG
1 ACGCTACCAGGCG
5817 AC
1 AC
5819 ATTCATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.39, G:0.29, T:0.07
Consensus pattern (13 bp):
ACGCTACCAGGCG
Found at i:6175 original size:58 final size:58
Alignment explanation
Indices: 6085--6200 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
6075 GGGAGGGACA
* * *
6085 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAATGGTATCTAAATTCTAGCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTT
* * *
6143 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTT
6201 TGGGTTTGGG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.34
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTT
Found at i:26295 original size:15 final size:15
Alignment explanation
Indices: 26275--26305 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26265 CAAAACGCGC
26275 TACTACCAGGCGACA
1 TACTACCAGGCGACA
*
26290 TACTACCAGTCGACA
1 TACTACCAGGCGACA
26305 T
1 T
26306 TCATGTGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.19
Consensus pattern (15 bp):
TACTACCAGGCGACA
Found at i:26500 original size:42 final size:43
Alignment explanation
Indices: 26372--26549 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 43
26362 TTTTCTTTAG
* * ** * *
26372 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCCGAAGCACCAAGGTGCCAATGCTACTCGAGGCT
* * * * * *
26415 CTCGCACATCC-AA-CGTCCTAGGTTGCCTATGGT-GTCCGAGGCT
1 CCCGCACATCCGAAGC-ACCAAGG-TGCCAATGCTACT-CGAGGCT
*
26458 CCCGTACATCC-AAGCACCAAGGTGCCAATGCTACTCGAGGCT
1 CCCGCACATCCGAAGCACCAAGGTGCCAATGCTACTCGAGGCT
* * * * *
26500 CTCGCACATCCGAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCGAAGCACCAAGGTGCCAATGCTACTCGAGGCT
*
26543 CCTGCAC
1 CCCGCAC
26550 GACCAAGGGC
Statistics
Matches: 104, Mismatches: 25, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 72 0.69
44 1 0.01
ACGTcount: A:0.19, C:0.37, G:0.27, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCGAAGCACCAAGGTGCCAATGCTACTCGAGGCT
Found at i:26532 original size:85 final size:84
Alignment explanation
Indices: 26372--27229 Score: 432
Period size: 85 Copynumber: 10.1 Consensus size: 84
26362 TTTTCTTTAG
* * ** * * * * *
26372 CCCGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACTCGCACATCCAACGTCCTAGG
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGCTGCCCGAGGCTCTCGCACA-CCAAGGCCCAAGG
*
26437 TTGCCTATGGTGTCCGAGGCT
64 TTGCCGATGGTGTCCGAGGCT
* * * * *
26458 CCCGTACATCCAAGCACCAAGGTGCCAATGCTACTCGAGGCTCTCGCACATCCGAGGCACCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCTCGCACA-CCAAGGC-CCAAGG
26523 -TGCCGATGGTG-CTCGAGGCT
64 TTGCCGATGGTGTC-CGAGGCT
* ** * * * *
26543 CCTGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTC-CGGCACGACCAAAGG-CCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCTC-GCAC-ACC-AAGGCCCA
*
26605 AGGGTGCCGATGGTGTCCGAGGCT
61 AGGTTGCCGATGGTGTCCGAGGCT
* * * * * * *
26629 CCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAGGACCAGGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCTCGCA-CACCAAGGCCCAAGGT
* *
26694 TACCGATGGTGTCCCAGGCT
65 TGCCGATGGTGTCCGAGGCT
* * * * * *
26714 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGGGCCTAGG-
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCTCGCAC-ACCAAGGCCCAAGGT
* *
26778 TGCCGATGGT-CCCGAGGCG
65 TGCCGATGGTGTCCGAGGCT
* * * * * * * * *
26797 CTCGCACGA-CCAAAGGC-CTAGGGTGCCGATGGTGCCCGAGG-TTTCCGCATGACCAGGGGCCT
1 CCCGCAC-ATCC-AA-GCACCAAGGTGCCGATGCTGCCCGAGGCTCT-CGCA-CACCAAGGCCCA
* *
26859 AGGGTGCCGATGGTGCCCGAGGCT
61 AGGTTGCCGATGGTGTCCGAGGCT
** * * * * * *
26883 CCCGCACGA-CCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCTCGCAC-ACCAAGGCCCAAG
26947 GTTGCCGAT-G-GTCCTGAGGCT
63 GTTGCCGATGGTGTCC-GAGGCT
* * * * * * * *
26968 CCCACACGA-CC-AGGAGCCTAGGTTGCCGATGGT-CTCCGA-GCTCCCGCACGACCAGGGGCCT
1 CCCGCAC-ATCCAAGCA-CCAAGG-TGCCGATGCTGC-CCGAGGCTCTCGCAC-ACCAAGGCCCA
* *
27029 AGGTT-CTGATGGTGTCTGAGGCT
61 AGGTTGCCGATGGTGTCCGAGGCT
*** * * * * * *
27052 CCCGCACGA-CC-AGGGTCTAGGTTGCCGATGGTGTCTGAGGCTCTCGCACGACCAAGGACCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCTCGCAC-ACCAAGGCCCAAG
*
27115 GTTGCCGATGGTGGCCGAGGCT
63 GTTGCCGATGGTGTCCGAGGCT
** * * * * * *
27137 CCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTC-CTGCATATCCAAGGCACCA
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCCCGAGGCTCTC-GCACA-CCAAGGC-CCA
*
27200 AGG-TGCCGATGCTG-CTCGAGGCT
61 AGGTTGCCGATGGTGTC-CGAGGCT
*
27223 CACGCAC
1 CCCGCAC
27230 CACTAACGTC
Statistics
Matches: 650, Mismatches: 84, Indels: 76
0.80 0.10 0.09
Matches are distributed among these distances:
83 39 0.06
84 134 0.21
85 271 0.42
86 195 0.30
87 11 0.02
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.16
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCCCGAGGCTCTCGCACACCAAGGCCCAAGGTT
GCCGATGGTGTCCGAGGCT
Found at i:26538 original size:43 final size:43
Alignment explanation
Indices: 26431--27229 Score: 581
Period size: 43 Copynumber: 18.8 Consensus size: 43
26421 CATCCAACGT
* *
26431 CCTAGGTTGCCTATGGTG-TCCGAGGCTCCCGTAC-ATCCAA-GCA
1 CCTAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGGCA
* * * * * *
26474 CCAAGGTGCCAATGCTACTCGAGGCTCTCGCAC-ATCCGAGGCA
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGCA
* * *
26517 CCAAGGTGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGG-G
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* * *
26559 CCTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCAAAGG--
1 CCTAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACC-AAGGCA
*
26602 CCTAGGGTGCCGATGGTG-TCCGAGGCTCCCACAC-ATCCAA-GCA
1 CCTA-GGTGCCGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGGCA
* * * **
26645 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAGGACC-AGGGG
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* * *
26687 CCTAGGTTACCGATGGTG-TCCCAGGCTCTCGCAC-ATCCAA-GCA
1 CCTAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGGCA
* * * *
26730 CCAAGGTGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGG-G
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* * *
26772 CCTAGGTGCCGATGGT-CCCGAGGCGCTCGCACGACCAAAGG--
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACC-AAGGCA
* * * * **
26813 CCTAGGGTGCCGATGGTGCCCGAGGTTTCCGCATGACC-AGGGG
1 CCTA-GGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* *
26856 CCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
1 CCTA-GGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* **
26899 CCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGG
1 CCTAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
* *
26942 CCTAGGTTGCCGATGGTCCT-GAGGCTCCCACACGACC-AGG-A
1 CCTAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
**
26983 GCCTAGGTTGCCGATGGT-CTCCGA-GCTCCCGCACGACC-AGGGG
1 -CCTAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACGACCAAGGCA
* * *
27026 CCTAGGTTCTGATGGTG-TCTGAGGCTCCCGCACGACC-AGG-G
1 CCTAGGTGCCGATGGTGCTC-GAGGCTCCCGCACGACCAAGGCA
* *
27067 TCTAGGTTGCCGATGGTG-TCTGAGGCTCTCGCACGACCAAGG-A
1 CCTAGG-TGCCGATGGTGCTC-GAGGCTCCCGCACGACCAAGGCA
*
27110 CCTAGGTTGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGG-G
1 CCTAGG-TGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGCA
* * *
27153 CCTAGGTTACCGATGGTG-TCTGAGGCTCCTGCA-TATCCAAGGCA
1 CCTAGG-TGCCGATGGTGCTC-GAGGCTCCCGCACGA-CCAAGGCA
* * *
27197 CCAAGGTGCCGATGCTGCTCGAGGCTCACGCAC
1 CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCAC
27230 CACTAACGTC
Statistics
Matches: 630, Mismatches: 81, Indels: 89
0.79 0.10 0.11
Matches are distributed among these distances:
40 1 0.00
41 45 0.07
42 234 0.37
43 330 0.52
44 20 0.03
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
CCTAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGCA
Found at i:27100 original size:297 final size:295
Alignment explanation
Indices: 26438--27229 Score: 830
Period size: 297 Copynumber: 2.7 Consensus size: 295
26428 CGTCCTAGGT
* * * ** * * * * *
26438 TGCCTATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACCAAGGTGCCAATGCTACTCGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCGCT
* * * *
26502 CGCAC-ATCCGAGGCACC-AAGGTGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGGGCCTAGG
64 CGCACGA-CCAAGG-ACCTAGGGTGCCGATGGTGCCCGAGGTTCC-GCACGACCAAGGGCCTAGG
* * *
26565 TTACCGATGGTGCCCGAGGCTCCGGCACGACCAAAGGCCTAGGGTGCCGATGGTGTCCGAGGCTC
126 TTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCTC
* * * *
26630 CCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAGGACCAGGGGCCTAGGTT
190 CCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAGGAGCCTAGGTT
* *
26695 ACCGATGGTGTCCCAGGCTCTCGCACATCCAAGCACCAAGG
255 ACCGATGGTCTCCCAGGCTCCCGCACATCCAAGCACCAAGG
*
26736 TGCCGATGGTGCCCGAGGTTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCGCTCG
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCGCTCG
* * * *
26801 CACGACCAAAGG-CCTAGGGTGCCGATGGTGCCCGAGGTTTCCGCATGACCAGGGGCCTAGGGTG
66 CACGACC-AAGGACCTAGGGTGCCGATGGTGCCCGAGG-TTCCGCACGACCAAGGGCCTAGGTTA
26865 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCG
129 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCG
* ** * * *
26930 CACGA-CCAGGGGCCTAGGTTGCCGATGGT-CCTGAGGCTCCCACACGACCAGGAGCCTAGGTTG
193 CAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGACCAGGAGCCTAGGTTA
* * ** *
26993 CCGATGGTCTCCGA-GCTCCCGCACGA-CCAGGGGCCTAGG
256 CCGATGGTCTCCCAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * * * * *
27032 TTCTGATGGTGTCTGAGGCTCCCGCACGACC-AGGGTCTAGGTTGCCGATGGTGTCTGAGGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCGCT
* * *
27096 CGCACGACCAAGGACCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
64 CGCACGACCAAGGACCTAGGGTGCCGATGGTGCCCGAGG-TTCCGCACGACCAAGGGCCTAGGTT
* * * * * * * * *
27161 ACCGATGGTGTCTGAGGCTCCTGCA-TATCCAAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCA
128 ACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCC
27225 CGCAC
191 CGCAC
27230 CACTAACGTC
Statistics
Matches: 415, Mismatches: 65, Indels: 29
0.82 0.13 0.06
Matches are distributed among these distances:
295 9 0.02
296 63 0.15
297 278 0.67
298 64 0.15
299 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (295 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCGCTCG
CACGACCAAGGACCTAGGGTGCCGATGGTGCCCGAGGTTCCGCACGACCAAGGGCCTAGGTTACC
GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAGGAGCCTAGGTTACCGAT
GGTCTCCCAGGCTCCCGCACATCCAAGCACCAAGG
Found at i:27154 original size:254 final size:253
Alignment explanation
Indices: 26431--27181 Score: 840
Period size: 254 Copynumber: 2.9 Consensus size: 253
26421 CATCCAACGT
* * * ** * * * *
26431 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGTACATCCAAGCACCAAGGTGCCAATGCTACTCGA
1 CCTAGGTTACCGATGGTGTCCCAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * *
26496 GGCTCTCGCAC-ATCCGAGGCACCAAGGTGCCGATGGTGCTCGAGGCTCCTGCACGACCAAGGGC
66 GGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCT-GAGGCTCCCGCACGACCAAGGGC
* *
26560 CTAGGTTACCGATGGTGCCCGAGGCTC-CGGCACGACCAAAGGCCTAGGGTGCCGATGGTGTCCG
128 CTAGGTTGCCGATGGTGCCCGAGGCTCTC-GCACGACC-AAGGCCTAGGGTGCCGATGGTGCCCG
* ** * *
26624 AGGCTCCCACAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAGGACCAGGGG
191 AGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
26687 CCTAGGTTACCGATGGTGTCCCAGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTACCGATGGTGTCCCAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * * *
26752 GGTTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCGCTCGCACGACCAAAGGCCTA
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCTGAGGCTCCCGCACGACCAAGGGCCTA
* * * *
26817 GGGTGCCGATGGTGCCCGAGG-TTTCCGCATGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAGG
131 GGTTGCCGATGGTGCCCGAGGCTCT-CGCACGACCA-AGGCCTAGGGTGCCGATGGTGCCCGAGG
26881 CTCCCGCACGACCAAGGGCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
194 CTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * *
26942 CCTAGGTTGCCGAT-G-GTCCTGAGGCTCCCACACGA-CC-AGGAGCCTAGGTTGCCGATGGT-C
1 CCTAGGTTACCGATGGTGTCC-CAGGCTCCCACAC-ATCCAAGCA-CCAAGG-TGCCGATGGTGC
* * *
27002 TCCGA-GCTCCCGCACGACCAGGGGCCTAGGTTCTGATGGTGTCTGAGGCTCCCGCACGACC-AG
62 -CCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTG-CTGAGGCTCCCGCACGACCAAG
* * * * *
27065 GGTCTAGGTTGCCGATGGTGTCTGAGGCTCTCGCACGACCAAGGACCTAGGTTGCCGATGGTGGC
125 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG-CCTAGGGTGCCGATGGTGCC
* * *
27130 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCC
189 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCC
27182 TGCATATCCA
Statistics
Matches: 422, Mismatches: 59, Indels: 30
0.83 0.12 0.06
Matches are distributed among these distances:
253 11 0.03
254 241 0.57
255 99 0.23
256 70 0.17
257 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (253 bp):
CCTAGGTTACCGATGGTGTCCCAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCTGAGGCTCCCGCACGACCAAGGGCCTA
GGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:28025 original size:58 final size:59
Alignment explanation
Indices: 27942--28055 Score: 167
Period size: 58 Copynumber: 1.9 Consensus size: 59
27932 ACAGGGACAA
* *
27942 TTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTAAATTCTAGC-TTTGGGACGG
1 TTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTTGGGACGG
* * * *
28000 TTCATTCATTATTGGTTACTGAACATGTAACGGTATCTGAATTCTACCTTTTGGGA
1 TTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTTGGGA
28056 TTGGGGAGGG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 42 0.86
59 7 0.14
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.37
Consensus pattern (59 bp):
TTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTTGGGACGG
Found at i:28635 original size:58 final size:59
Alignment explanation
Indices: 28545--28665 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
28535 GAGAGGGACA
* *
28545 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTAAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTT
* * * *
28603 GGGACGGTTCATTCATTATTGGTTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTT
28662 GGGA
1 GGGA
28666 TTAGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTAAATTCTACCTTTT
Found at i:28675 original size:610 final size:609
Alignment explanation
Indices: 27506--28914 Score: 2496
Period size: 610 Copynumber: 2.3 Consensus size: 609
27496 GACCACCGCC
* * * * *
27506 GGAATAGATCGTCGGAGCACCGCTGGGAACCTAACCGGCGATGGGGGGCACCGACATCTGGGCAT
1 GGAATGGATCGTCGGAGCACCGC-GGGAACCTAACCGGTGGTGGGGGGCACCGACGTCCGGGCAT
* * * *
27571 GAGATGGGCGTGGGCAGTGCCCTGGACAACCCCT-GTTCGCTCAATATCACCTCCCCCCTAAAGA
65 GCGATGGGCGTGGGCAGTGCCCTAGATAACCCCTGGCT-GCTCAATATCACCTCCCCCCTAAAGA
27635 GCTAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAGTTTAT
129 GCTAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAGTTTAT
27700 GGTCCCGACACTTCTGCACCAACGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCCGCACAT
194 GGTCCCGACACTTCTGCACCAACGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCCGCACAT
* *
27765 CCGATGCACCAAGGTACTGGTGCTGTCCGATGCTCCGACACATCGAAGGGGCCGGTGGCGCCCCG
259 CCGATGCACCAAGGTACCGGTGCTGCCCGATGCTCCGACACATCGAAGGGGCCGGTGGCGCCCCG
*
27830 ATGGCCCCGCACCACGGGATGGCACACGCTGCCGATGGTGTACGAGGATACCGTACGATCGGGGC
324 ATGGCCCCGCACCACGGGATGGCACACGCTACCGATGGTGTACGAGGATACCGTACGATCGGGGC
* *
27895 CGAAGGTGCCGGAGGCTCTTCTTGCAAAAGGAGAGGGACAGGGACAATTCATTCATTGTTGGGTA
389 CAAAGGTGCCGGAGGCCCTTCTTGCAAAAGGAGAGGGACAGGGACAATTCATTCATTGTTGGGTA
*
27960 CCGAACATGCAACGGTATCTAAATTCTAGCTTTGGGACGGTTCATTCATTATTGGTTACTGAACA
454 CCGAACATGCAACGGTATCTAAATTCTAGCTTTGGGACGGTTCATTCATTATTGGTTACCGAACA
*
28025 TGTAACGGTATCTGAATTCTACCTTTTGGGATTGGGGAGGGACTTGTTGCGCCGTTTTGTATATC
519 TGTAACGGTATCTGAATTCTACCTTTTGGGATTAGGGAGGGACTTGTTGCGCCGTTTTGTATATC
*
28090 CCGGGATGGATCGCCGGATCATCGCT
584 CCGGGATGGATCACCGGATCATCGCT
* *
28116 GGGATGGATCGTCGGAGCACCGTCGAGAACCTAACCGGTGGTGGGGGGCACCGACGTCCGGGCAT
1 GGAATGGATCGTCGGAGCACCG-CGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCCGGGCAT
*
28181 GCGATGGGCGTGGGCATTGCCCTAGATAACCCCTGGCTGCTCAATATCACCTCCCCCCTAAAGAG
65 GCGATGGGCGTGGGCAGTGCCCTAGATAACCCCTGGCTGCTCAATATCACCTCCCCCCTAAAGAG
28246 CTAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAGTTTATG
130 CTAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAGTTTATG
*
28311 GTCCCGACACTTCTGCACCAACGGGGGCCCAAAATTAGTTTTGGTGCTCGACCCTCCCGCACATC
195 GTCCCGACACTTCTGCACCAACGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCCGCACATC
28376 CGATGCACCAAGGTACCGGTGCTGCCCGATGCTCCGACACATCGAAGGGGCCGGTGGCGCCCCGA
260 CGATGCACCAAGGTACCGGTGCTGCCCGATGCTCCGACACATCGAAGGGGCCGGTGGCGCCCCGA
28441 TGGCCCCGCACCACGGGATGGCACACGCTACCGATGGTGTACGAGGATACCGTACGATCGGGGCC
325 TGGCCCCGCACCACGGGATGGCACACGCTACCGATGGTGTACGAGGATACCGTACGATCGGGGCC
*
28506 AAAGGTGCCGGAGGCCCTTCTTGCAAAAGGAGAGGGACAGGGACGATTCATTCATTGTTGGGTAC
390 AAAGGTGCCGGAGGCCCTTCTTGCAAAAGGAGAGGGACAGGGACAATTCATTCATTGTTGGGTAC
28571 CGAACATGCAACGGTATCTAAATTCTAGCTTTGGGACGGTTCATTCATTATTGGTTACCGAACAT
455 CGAACATGCAACGGTATCTAAATTCTAGCTTTGGGACGGTTCATTCATTATTGGTTACCGAACAT
28636 GTAACGGTATCTGAATTCTACCTTTTGGGATTAGGGAGGGACTTGTTGCGCCGTTTTGTATATCC
520 GTAACGGTATCTGAATTCTACCTTTTGGGATTAGGGAGGGACTTGTTGCGCCGTTTTGTATATCC
28701 CGGGATGGATCACCGGATCATCGCT
585 CGGGATGGATCACCGGATCATCGCT
* * *
28726 GGAATGGATCATCGGAGCACTGCCGGGAACCTAACCGGTGGTGAGGGGCACCGACGTCCGGGCAT
1 GGAATGGATCGTCGGAGCACCG-CGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCCGGGCAT
* *
28791 GCGATGGGCGTGGGCAGTGCCCTAGATAACCCCTGGCTGCTCAATATCACTTCCCCACTAAAGAG
65 GCGATGGGCGTGGGCAGTGCCCTAGATAACCCCTGGCTGCTCAATATCACCTCCCCCCTAAAGAG
* * * *
28856 CTAAAAAAACTTGGTCAATGTACTACCAGTCGACATTCATGTGTCTGAAACAGGGACAG
130 CTAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAG
28915 GTTTCAGATG
Statistics
Matches: 762, Mismatches: 35, Indels: 4
0.95 0.04 0.00
Matches are distributed among these distances:
610 759 1.00
611 3 0.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (609 bp):
GGAATGGATCGTCGGAGCACCGCGGGAACCTAACCGGTGGTGGGGGGCACCGACGTCCGGGCATG
CGATGGGCGTGGGCAGTGCCCTAGATAACCCCTGGCTGCTCAATATCACCTCCCCCCTAAAGAGC
TAAAAAAACTTGGTCAATGTGCTATCAGGCGACATTCATGTGTCTGAAACAGAGACAGTTTATGG
TCCCGACACTTCTGCACCAACGGGGGCCCAAAATTAGCTTTGGTGCTCGACCCTCCCGCACATCC
GATGCACCAAGGTACCGGTGCTGCCCGATGCTCCGACACATCGAAGGGGCCGGTGGCGCCCCGAT
GGCCCCGCACCACGGGATGGCACACGCTACCGATGGTGTACGAGGATACCGTACGATCGGGGCCA
AAGGTGCCGGAGGCCCTTCTTGCAAAAGGAGAGGGACAGGGACAATTCATTCATTGTTGGGTACC
GAACATGCAACGGTATCTAAATTCTAGCTTTGGGACGGTTCATTCATTATTGGTTACCGAACATG
TAACGGTATCTGAATTCTACCTTTTGGGATTAGGGAGGGACTTGTTGCGCCGTTTTGTATATCCC
GGGATGGATCACCGGATCATCGCT
Found at i:32103 original size:48 final size:50
Alignment explanation
Indices: 32031--32126 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 50
32021 CAAGCGTTCT
* *
32031 TTCGCTCAAAAACGCCTAGGTCAGCCTATCTCGCAACAA-TTAAGGATCC
1 TTCGCTCAAAAACGCCTAAGTCAGCCTATCTCACAACAATTTAAGGATCC
*
32080 TTCGCTC-AAAACGCCTAAGTCAGCCTGTCTCACAACAATTTAAGGAT
1 TTCGCTCAAAAACGCCTAAGTCAGCCTATCTCACAACAATTTAAGGAT
32127 TCAATGGAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 28 0.65
49 15 0.35
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (50 bp):
TTCGCTCAAAAACGCCTAAGTCAGCCTATCTCACAACAATTTAAGGATCC
Found at i:32477 original size:35 final size:35
Alignment explanation
Indices: 32438--32509 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
32428 GTCTGGGATC
*
32438 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * *
32473 GCATATCTTTGAAGATTACTTTCCATATTTTCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
32508 GC
1 GC
32510 TCCAGAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:48329 original size:35 final size:35
Alignment explanation
Indices: 48290--48361 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
48280 GTCTGGGATC
*
48290 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * *
48325 GCATATCTTTGAAGATTACTTTCCATATTTTCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
48360 GC
1 GC
48362 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:53049 original size:43 final size:43
Alignment explanation
Indices: 52966--53867 Score: 641
Period size: 43 Copynumber: 21.2 Consensus size: 43
52956 TTTTCTTTAG
* * ** * * *
52966 CCCGCACATCCGAGGCACC-AGGGTGCCCCTGCTGCTCGAGGCA
1 CCCGCACATCCAAGG-ACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
53009 CCCGCACATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCT
1 CCCGCACATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
53052 CCCGCACATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
** *
53094 CCCGCACATCTGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGG-ACCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
53137 CCCGCACGA-CCAAGGGCTTAGGTTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
53180 CCGGCACGA-CCAAGGGCCTAGGTTGTCGATAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
53223 CCCGCACATCCAAGCACCAAGG-TGCTGATGGTGCCCGAGACT
1 CCCGCACATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
** * * * * *
53265 CCTACACGA-CCAGGGGCCTAGGTTACCGATGGTGTCCTAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
53308 CTCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
*
53350 CCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
53391 CTCGCATGA-CCAAGGGCTTAGGGTGCCGATGGTGCCCGAGGCT
1 CCCGCA-CATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
53434 CCCGCACGA-CCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
53477 CCCGCA-AGACCAGGGGCCTAGGGTGCCGGTGGTGCCCGAGGCT
1 CCCGCACA-TCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
53520 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGTCCGA-GCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * ** * *
53562 TCCGCATGA-CCAGGGGCCTAGGTT--CGAACGTGTCTGAGGCT
1 CCCGCA-CATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * **
53603 CCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGTTTCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
53646 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* *
53689 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* ** *
53732 CCCGCACGA-CCAAGGGCCTAGGTTTTCGATGGTGGCCGAGGCT
1 CCCGCAC-ATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * *
53775 CCCGCACGA-CCAATGG-CTTAGCTTGCCGATGGTGTCCAAGGCT
1 CCCGCAC-ATCCAA-GGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
53818 CCTGCATATCCAAGGTACCAAGG-TGCCGATGCTGCTCGAGGCT
1 CCCGCACATCCAAGG-ACCTAGGTTGCCGATGGTGCCCGAGGCT
*
53861 CACGCAC
1 CCCGCAC
53868 CACTGACGTC
Statistics
Matches: 709, Mismatches: 124, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
40 10 0.01
41 51 0.07
42 145 0.20
43 496 0.70
44 6 0.01
45 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
Found at i:53225 original size:86 final size:86
Alignment explanation
Indices: 53002--53867 Score: 864
Period size: 86 Copynumber: 10.2 Consensus size: 86
52992 CCCTGCTGCT
* * * *
53002 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAA
** * * * *
53065 GCACCAAGG-TGCCAATGCTGCT
64 GGGCCTAGGTTGCCGATGGTGCC
** * * *
53087 CGAGGCTCCCGCAC-ATCTGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAA
* *
53150 GGGCTTAGGTTACCGATGGTGCC
64 GGGCCTAGGTTGCCGATGGTGCC
* * *
53173 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTGTCGATAGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAG
** * *
53237 CACCAAGG-TGCTGATGGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* ** * * * *
53258 CGAGACTCCTACACGACCAGGGGCCTAGGTTACCGATGGTGTCCTAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAG
** *
53322 CACCAAGG-TGCCGATGGTGCC
65 GGCCTAGGTTGCCGATGGTGCC
* * *
53343 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
* *
53406 GCTTAGGGTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * * * *
53427 CGAGGCTCCCGCACGACCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCAAGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
* *
53492 GCCTAGGGTGCCGGTGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * * *
53513 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGA-GCTTCCGCATGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
** *
53577 GCCTAGGTT--CGAACGTGTC
66 GCCTAGGTTGCCGATGGTGCC
* * * * *
53596 TGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTTTCCGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
53661 GCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGCC
* * *
53682 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
** *
53747 GCCTAGGTTTTCGATGGTGGC
66 GCCTAGGTTGCCGATGGTGCC
* * * * * *
53768 CGAGGCTCCCGCACGACCAATGGCTTAGCTTGCCGATGGTGTCCAAGGCTCCTGCA-TATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAG
* * * *
53832 GTACCAAGG-TGCCGATGCTGCT
65 G-GCCTAGGTTGCCGATGGTGCC
*
53854 CGAGGCTCACGCAC
1 CGAGGCTCCCGCAC
53868 CACTGACGTC
Statistics
Matches: 661, Mismatches: 105, Indels: 29
0.83 0.13 0.04
Matches are distributed among these distances:
83 71 0.11
84 74 0.11
85 203 0.31
86 307 0.46
87 6 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (86 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGCC
Found at i:53581 original size:212 final size:211
Alignment explanation
Indices: 53002--53787 Score: 802
Period size: 212 Copynumber: 3.7 Consensus size: 211
52992 CCCTGCTGCT
* * * * * * *
53002 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAG
** * * * * ** * *
53065 GCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCTGAGGCACCAAGG-TGCCGATGGT
64 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGT
*
53127 GCCCGAGGCTCCCGCACGACCAAGGGCTTAGGTTACCGATGGTGCCCGAGGCTCCGGCACGACCA
127 GCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-T-CCGATGGT-CCCGAGGCTCC-GCACGACCA
* *
53192 AGGGCCTAGGTTGTCGATAGTGTC
188 AGGGCCTAGGTTGCCGATGGTGTC
** * * * **
53216 CGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCTGATGGTGCCCGAGACTCCTACACGACCAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGG
* * * * ** *
53279 GGCCTAGGTTACCGATGGTGTCCTAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
*
53342 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCCCGAGGCTCTCGCATGACCAAGGG
129 CCGAGGCTCCCGCACGACCAAGGGCCTAGGT-CCGATGGTCCCGAGGCTC-CGCACGACCAAGGG
* * *
53407 CTTAGGGTGCCGATGGTGCC
192 CCTAGGTTGCCGATGGTGTC
* * *
53427 CGAGGCTCCCGCACGACCAGGGGCCTAGGGTACCGATGGTGCCCGAGGCTCCCGCAAGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
* * * *
53492 GCCTAGGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * * *
53557 GA-GCTTCCGCATGACCAGGGGCCTAGGTTCGAACGTGT-CTGAGGCTCCCGCACGACTAGGGGC
131 GAGGCTCCCGCACGACCAAGGGCCTAGGTCCG-ATG-GTCCCGAGGCT-CCGCACGACCAAGGGC
*
53620 CTAGGTTGCCGATGGTTTC
193 CTAGGTTGCCGATGGTGTC
* * * * *
53639 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCTCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
** *
53704 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTTCGATGGTGGCC
66 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
53769 GAGGCTCCCGCACGACCAA
131 GAGGCTCCCGCACGACCAA
53788 TGGCTTAGCT
Statistics
Matches: 476, Mismatches: 85, Indels: 23
0.82 0.15 0.04
Matches are distributed among these distances:
211 59 0.12
212 258 0.54
213 112 0.24
214 47 0.10
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (211 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGG
GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
GAGGCTCCCGCACGACCAAGGGCCTAGGTCCGATGGTCCCGAGGCTCCGCACGACCAAGGGCCTA
GGTTGCCGATGGTGTC
Found at i:59950 original size:58 final size:59
Alignment explanation
Indices: 59860--59980 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
59850 GGGAGGGACA
* * *
59860 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTTAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* *
59918 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
59977 GGGA
1 GGGA
59981 TTGGGGAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:60068 original size:24 final size:23
Alignment explanation
Indices: 60016--60068 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
60006 TTGTATATCC
* *
60016 CGGGATGGATCGCCGGATCATCG
1 CGGGATGGATCGCCGGAGCACCG
*
60039 CTGGGATGGATCGTCGGAGCACCG
1 C-GGGATGGATCGCCGGAGCACCG
60063 TCGGGA
1 -CGGGA
60069 ACCTAACCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.17, C:0.25, G:0.42, T:0.17
Consensus pattern (23 bp):
CGGGATGGATCGCCGGAGCACCG
Found at i:64056 original size:46 final size:46
Alignment explanation
Indices: 64002--64174 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
63992 TTGGGCATCC
64002 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
64048 AAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * * *
64095 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* **
64141 GAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64175 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:64154 original size:93 final size:93
Alignment explanation
Indices: 63995--64165 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63985 GGGATATTTG
* * *
63995 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
64060 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
64088 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
64153 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
64166 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70756 original size:40 final size:40
Alignment explanation
Indices: 70639--71288 Score: 387
Period size: 42 Copynumber: 15.3 Consensus size: 40
70629 GCTCCCGCAC
*
70639 GGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTGCCCGA
1 GGCT-CCGCACGACCAAGGGCCTAGG-TGCCGATGGTG-CCGA
*
70682 GGCTCTGGCACGACCAA-GGCC-A-GTGCCGATGGTGCCGA
1 GGCTC-CGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGA
70720 -GCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGA
1 GGCTCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCGA
** *
70760 GGCTCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCGA
1 GGCTCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCGA
*
70800 GGCTCCCGCACGACC-AGGGCCTAGGTGCCGATGGTGCCCA
1 GGCT-CCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGA
* *
70840 GGCTCTCGCCACCAGCCAACGAGGTCC-AGGCTCCCACCAAGCCA-GGTGCCGA
1 GGCTC-CG-CACGA-CCAA-G-GG-CCTAGG-T---GCC--G--ATGGTGCCGA
** **** * * * * *
70892 TGG-TGCC-CGAGGCTCCCCCACGACCAAGGGCCTA-GGTGCCGATGGTCCCGA
1 -GGCT-CCGC-A--CGACCAAGGGCCTAGGTGCCGATGGTG-C--------CGA
* *
70943 GGCTCTCGCACGACCAAGGGCCTAGGGTGTCGATGGTCCCGA
1 GGCTC-CGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCGA
*
70985 GGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCTGA
1 GGCT-CCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCC-GA
* *
71028 GGCTCCCGCACGACTAGGGGCCTAGGGTGCCGATGGTGCCCGA
1 GGCT-CCGCACGACCAAGGGCCTA-GGTGCCGATGGTG-CCGA
* *
71071 GGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTCCCGA
1 GGCT-CCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCGA
* * *
71113 GGCTCTCGCACGACCAGGGGCCTAAGTTACCGATGGTGTCCGA
1 GGCTC-CGCACGACCAAGGGCCT-AGGTGCCGATGGTG-CCGA
* ** *
71156 -GCTCCCGCACGACCAGGGGCCTAGGTTACGATGGTGTCTGA
1 GGCT-CCGCACGACCAAGGGCCTAGGTGCCGATGGTG-CCGA
*
71197 GGCTCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGTCGA
1 GGCT-CCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCGA
71238 GGCTCTCGCACGACCAAGGGCCTAGGTTGCC-ATGGTGCCCGA
1 GGCTC-CGCACGACCAAGGGCCTAGG-TGCCGATGGTG-CCGA
71280 --CTCCGCACG
1 GGCTCCGCACG
71289 GGCCATGTGC
Statistics
Matches: 494, Mismatches: 56, Indels: 118
0.74 0.08 0.18
Matches are distributed among these distances:
36 10 0.02
37 8 0.02
38 5 0.01
39 18 0.04
40 67 0.14
41 78 0.16
42 148 0.30
43 98 0.20
44 3 0.01
45 5 0.01
46 5 0.01
49 9 0.02
50 12 0.02
51 11 0.02
52 12 0.02
53 5 0.01
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (40 bp):
GGCTCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGA
Found at i:71047 original size:43 final size:43
Alignment explanation
Indices: 70884--71279 Score: 531
Period size: 42 Copynumber: 9.4 Consensus size: 43
70874 CACCAAGCCA
* *
70884 GGTGCCGATGGTGCCCGAGGCTCCCCCACGACCAAGGGCCTA-
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* *
70926 GGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
*
70968 GGTGTCGATGGT-CCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* *
71010 GGTGCCGATGGTGCCTGAGGCTCCCGCACGACTAGGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
71053 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* * *
71096 GTTGCCGATGGT-CCCGAGGCTCTCGCACGACCAGGGGCCTAA
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* * *
71138 GTTACCGATGGTGTCCGA-GCTCCCGCACGACCAGGGGCCTA-
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
** * *
71179 GGTTACGATGGTGTCTGAGGCTCCCGCACGACCA-GGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
* * * *
71221 GTTGCCGATGGTG-TCGAGGCTCTCGCACGACCAAGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
*
71263 GTTGCC-ATGGTGCCCGA
1 GGTGCCGATGGTGCCCGA
71280 CTCCGCACGG
Statistics
Matches: 320, Mismatches: 27, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
41 71 0.22
42 165 0.52
43 84 0.26
ACGTcount: A:0.16, C:0.33, G:0.36, T:0.16
Consensus pattern (43 bp):
GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
Found at i:71248 original size:83 final size:84
Alignment explanation
Indices: 70884--71279 Score: 514
Period size: 83 Copynumber: 4.7 Consensus size: 84
70874 CACCAAGCCA
* * *
70884 GGTGCCGATGGTGCCCGAGGCTCCCCCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTC
1 GGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTC
* *
70948 TCGCACGACCAAGGGCCTAG
65 CCGCACGACCAGGGGCCTAG
* * * *
70968 GGTGTCGATGGTCCCGAGGCTCCCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCTGAGGCTC
1 GGTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGGGCCTA-GGTTCCGATGGTGCCCGAGGCTC
*
71033 CCGCACGACTAGGGGCCTAG
65 CCGCACGACCAGGGGCCTAG
71053 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CCCGAGGCT
1 GGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCGAGGCT
* *
71117 CTCGCACGACCAGGGGCCTAA
64 CCCGCACGACCAGGGGCCTAG
* * * * *
71138 GTTACCGATGGTGTCCGA-GCTCCCGCACGACCAGGGGCCTAGGTTACGATGGTGTCTGAGGCTC
1 GGTGCCGATGGTG-CCGAGGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTC
71202 CCGCACGACCA-GGGCCTAG
65 CCGCACGACCAGGGGCCTAG
* * * *
71221 GTTGCCGATGGTGTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC-ATGGTGCCCGA
1 GGTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCGA
71280 CTCCGCACGG
Statistics
Matches: 275, Mismatches: 30, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
82 3 0.01
83 86 0.31
84 69 0.25
85 81 0.29
86 36 0.13
ACGTcount: A:0.16, C:0.33, G:0.36, T:0.16
Consensus pattern (84 bp):
GGTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCTCC
CGCACGACCAGGGGCCTAG
Found at i:71300 original size:23 final size:25
Alignment explanation
Indices: 71266--71313 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
71256 GGCCTAGGTT
71266 GCCATGGTGCCCGA-CTCCGCACGG
1 GCCATGGTGCCCGAGCTCCGCACGG
71290 GCCAT-GTGCCCGAGGCTCCGCACG
1 GCCATGGTGCCCGA-GCTCCGCACG
71314 ACCAAGGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 5 0.23
25 9 0.41
ACGTcount: A:0.12, C:0.42, G:0.33, T:0.12
Consensus pattern (25 bp):
GCCATGGTGCCCGAGCTCCGCACGG
Found at i:71368 original size:43 final size:43
Alignment explanation
Indices: 71299--71398 Score: 166
Period size: 43 Copynumber: 2.3 Consensus size: 43
71289 GGCCATGTGC
* *
71299 CCGAGGCTCC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGG
1 CCGAGGCTCCTGCATGACCAAGAGCCTAGGTTGCCGATGGTGG
*
71341 CCGAGGCTCCTGCATGACCAAGAGCCTAGGTTGCCGATGGTGT
1 CCGAGGCTCCTGCATGACCAAGAGCCTAGGTTGCCGATGGTGG
71384 CCGAGGCTCCTGCAT
1 CCGAGGCTCCTGCAT
71399 ATCTAAGGCA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 10 0.19
43 44 0.81
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (43 bp):
CCGAGGCTCCTGCATGACCAAGAGCCTAGGTTGCCGATGGTGG
Found at i:71419 original size:43 final size:42
Alignment explanation
Indices: 71299--71440 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 42
71289 GGCCATGTGC
* * *
71299 CCGAGGCTCC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGG
1 CCGAGGCTCCTGCATGACCAAGAGCCAAGGTTGCCGATGGT-G
*
71341 CCGAGGCTCCTGCATGACCAAGAGCCTAGGTTGCCGATGGTG
1 CCGAGGCTCCTGCATGACCAAGAGCCAAGGTTGCCGATGGTG
* *
71383 TCCGAGGCTCCTGCAT-ATCTAAG-GCACCAAGG-TGCCGATGCTG
1 -CCGAGGCTCCTGCATGA-CCAAGAG--CCAAGGTTGCCGATGGTG
*
71426 CTCGAGGCTCTTGCA
1 C-CGAGGCTCCTGCA
71441 CCACTGACGT
Statistics
Matches: 88, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
42 14 0.16
43 69 0.78
44 5 0.06
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
CCGAGGCTCCTGCATGACCAAGAGCCAAGGTTGCCGATGGTG
Found at i:71683 original size:24 final size:25
Alignment explanation
Indices: 71651--71721 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
71641 TTTCGAAATG
*
71651 GCTCACCGGAGCACCGCCGGGAA-A
1 GCTCGCCGGAGCACCGCCGGGAATA
* *
71675 GCTCGCCGGACCACCGCC-GGAATG
1 GCTCGCCGGAGCACCGCCGGGAATA
* *
71699 GATCGTCGGAGCACCGCCGGGAA
1 GCTCGCCGGAGCACCGCCGGGAA
71722 CCTAACCGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
23 4 0.10
24 31 0.79
25 4 0.10
ACGTcount: A:0.21, C:0.37, G:0.35, T:0.07
Consensus pattern (25 bp):
GCTCGCCGGAGCACCGCCGGGAATA
Found at i:76660 original size:19 final size:20
Alignment explanation
Indices: 76613--76661 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
76603 AAATAAAAAC
*
76613 AAGAAAA-AATAGGAAACCA
1 AAGAAAATAAAAGGAAACCA
* *
76632 AATAATATAAAAGG-AACCA
1 AAGAAAATAAAAGGAAACCA
76651 AAGAAAATAAA
1 AAGAAAATAAA
76662 TCAGGAGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.69, C:0.08, G:0.12, T:0.10
Consensus pattern (20 bp):
AAGAAAATAAAAGGAAACCA
Found at i:76667 original size:21 final size:20
Alignment explanation
Indices: 76619--76667 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
76609 AAACAAGAAA
* *
76619 AAATAGGAAACCAAATAATAT
1 AAATAGG-AACCAAAGAAAAT
76640 AAA-AGGAACCAAAGAAAAT
1 AAATAGGAACCAAAGAAAAT
76659 AAATCAGGA
1 AAAT-AGGA
76668 GGAAATCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 14 0.58
20 3 0.12
21 7 0.29
ACGTcount: A:0.63, C:0.10, G:0.14, T:0.12
Consensus pattern (20 bp):
AAATAGGAACCAAAGAAAAT
Found at i:76972 original size:9 final size:11
Alignment explanation
Indices: 76945--76986 Score: 54
Period size: 10 Copynumber: 4.1 Consensus size: 11
76935 AAACAAGCTT
76945 GCTGCTACCAG
1 GCTGCTACCAG
76956 GCTGCTACCA-
1 GCTGCTACCAG
*
76966 G-TGCTACAAG
1 GCTGCTACCAG
76976 GC-GCTACCAG
1 GCTGCTACCAG
76986 G
1 G
76987 AGACATTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.26
10 10 0.37
11 10 0.37
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.17
Consensus pattern (11 bp):
GCTGCTACCAG
Found at i:76983 original size:19 final size:20
Alignment explanation
Indices: 76947--76985 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
76937 ACAAGCTTGC
*
76947 TGCTACCAGGCTGCTACCAG
1 TGCTACAAGGCTGCTACCAG
76967 TGCTACAAGGC-GCTACCAG
1 TGCTACAAGGCTGCTACCAG
76986 GAGACATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (20 bp):
TGCTACAAGGCTGCTACCAG
Found at i:85965 original size:43 final size:43
Alignment explanation
Indices: 85156--85952 Score: 759
Period size: 42 Copynumber: 19.2 Consensus size: 43
85146 CCTTGCTGCT
* * * * *
85156 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
85199 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
85241 CGAGGCTCCCGCAC-ATCCGAGGACCAAGG-T-CCGA---TG-C
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
*
85278 CGAGGCTCCCGCACGACC-A-GGCCT-GG-TACCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
85316 CGAGGCTCCGGCACGACCAAGGGCCTAGG-TACCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** *
85358 CGA-G--CCCGCAC-ATCC--GCACCAAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
85394 CGAGGCTCCCGCACGACCAGGGGCCTAAGTTACCGATGGTGTCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CC
* ** *
85438 C-AGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGAT-GTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
85478 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
85519 CGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
85562 CGAGGCTCTCGCACGGCC-AGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
85604 CGAGGCTCCCGCACGA-CTAGGAGCCTAGG-TACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCC
* ** *
85646 TGAGGCTCCTACACGACC-AGGGACCTAGGTTGCCGATAGT-CC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* * ** *
85688 CAAGGCTCCCGCACGACCAGGGGCCTAGGTTATCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
85731 CGA-GCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
85772 TGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
85815 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
85858 CGAGGCTCTCGTACGACTAAGGGCCTAGTTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
85901 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
85944 CGAGGCTCC
1 CGAGGCTCC
85953 TGCATATCCA
Statistics
Matches: 645, Mismatches: 75, Indels: 68
0.82 0.10 0.09
Matches are distributed among these distances:
34 3 0.00
35 7 0.01
36 5 0.01
37 33 0.05
38 24 0.04
39 18 0.03
40 9 0.01
41 97 0.15
42 229 0.36
43 218 0.34
44 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:85978 original size:43 final size:43
Alignment explanation
Indices: 85156--86001 Score: 618
Period size: 43 Copynumber: 20.3 Consensus size: 43
85146 CCTTGCTGCT
* * * * * *
85156 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATGGTGCC
* * * *
85199 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATGGTGCC
*
85241 CGAGGCTCCCGCAC-ATCCGAGGACCAAGG-T-CCGA---TG-C
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATGGTGCC
* *
85278 CGAGGCTCCCGCACGACC-AGG-CC-TGG-TACCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * * *
85316 CGAGGCTCCGGCACGACCAAGGGCCTAGG-TACCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
*
85358 CGA-G--CCCGCAC-ATCC--GCACCAAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATGGTGCC
* * *
85394 CGAGGCTCCCGCACGACCAGGGGCCTAA-GTTACCGATGGTGTCC
1 CGAGGCTCCCGCACGACCAAGGACC-AAGGTTGCCGATGGTG-CC
* *
85438 C-AGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGAT-GTGCC
1 CGAGGCTCCCGCACGA-CCAAGGACCAAGGTTGCCGATGGTGCC
* *
85478 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * *
85519 CGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * * *
85562 CGAGGCTCTCGCACGGCC-AGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * *
85604 CGAGGCTCCCGCACGA-CTAGGAGCCTAGG-TACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGA-CCAAGGTTGCCGATGGTGCC
* ** * * *
85646 TGAGGCTCCTACACGACCAGGGACCTAGGTTGCCGATAGT-CC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * * ** *
85688 CAAGGCTCCCGCACGACCAGGGGCCTAGGTTATCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * *
85731 CGA-GCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * * *
85772 TGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * *
85815 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * * * * *
85858 CGAGGCTCTCGTACGACTAAGGGCCTAGTTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * *
85901 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
* * * *
85944 CGAGGCTCCTGCA-TATCCAAGGCACCAAGG-TGCCGATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGG-ACCAAGGTTGCCGATGGTGCC
*
85987 CGAAGGCTCTCGCAC
1 CG-AGGCTCCCGCAC
86002 CACTAACGTC
Statistics
Matches: 682, Mismatches: 83, Indels: 74
0.81 0.10 0.09
Matches are distributed among these distances:
34 3 0.00
35 6 0.01
36 7 0.01
37 33 0.05
38 24 0.04
39 20 0.03
40 6 0.01
41 95 0.14
42 235 0.34
43 237 0.35
44 16 0.02
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGACCAAGGTTGCCGATGGTGCC
Found at i:89369 original size:16 final size:16
Alignment explanation
Indices: 89348--89399 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
89338 TTTGGTTCGC
89348 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
89364 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
89380 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
89396 TGTA
1 TGTA
89400 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:89656 original size:18 final size:17
Alignment explanation
Indices: 89635--89669 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
89625 TTATTATTAA
*
89635 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
89653 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
89670 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:89723 original size:157 final size:157
Alignment explanation
Indices: 89522--89806 Score: 525
Period size: 157 Copynumber: 1.8 Consensus size: 157
89512 TAGAATACCC
89522 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
89587 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
89652 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
89679 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
89744 ATATCAATAATAAATAATTTAATCATATTTAAATATAATTATTATTAAATATATTATAATTAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA
89807 TAAGGAACCA
Statistics
Matches: 123, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 123 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (157 bp):
TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:89805 original size:15 final size:16
Alignment explanation
Indices: 89772--89806 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
89762 TTAATCATAT
*
89772 TTAAATATAATTATTA
1 TTAAATATAATTATAA
89788 TTAAATAT-ATTATAA
1 TTAAATATAATTATAA
89803 TTAA
1 TTAA
89807 TAAGGAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAAATATAATTATAA
Found at i:92912 original size:28 final size:28
Alignment explanation
Indices: 92881--92935 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
92871 GCAAATCGGT
*
92881 AGAAAAGAAAAGAAAATAAACAGAGGGC
1 AGAAAAGAAAAGAAAAGAAACAGAGGGC
*
92909 AGAAAAGAAAAGAAAAGAAACGGAGGG
1 AGAAAAGAAAAGAAAAGAAACAGAGGG
92936 AGCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.64, C:0.05, G:0.29, T:0.02
Consensus pattern (28 bp):
AGAAAAGAAAAGAAAAGAAACAGAGGGC
Found at i:96842 original size:58 final size:59
Alignment explanation
Indices: 96752--96872 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
96742 GGGAGGGATA
* * *
96752 GGGACGATTCTTTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* *
96810 GGGACGGTTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
96869 GGGA
1 GGGA
96873 TTGGAGAGAG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:97478 original size:43 final size:43
Alignment explanation
Indices: 97396--97608 Score: 302
Period size: 43 Copynumber: 5.0 Consensus size: 43
97386 TGAGGGGGCG
* *
97396 GCACGACCAGGGGCCTAGGTT-CCGATGGTGTCTGAGGCTCCC
1 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
* * *
97438 GCACGACCAGGGGCCTAGGTTGCCGATGATGTCCGAGGCTCTC
1 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
** *
97481 GCACGACCAAGGGCCTAGGTTGCCGATGGTCCCCGAGGCTCTC
1 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
* * *
97524 GCACGACCAAAGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCC
1 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
* *
97567 ACATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
1 GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
97609 TACATATCCA
Statistics
Matches: 154, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 21 0.14
43 133 0.86
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCC
Found at i:97634 original size:43 final size:43
Alignment explanation
Indices: 97412--97647 Score: 183
Period size: 43 Copynumber: 5.5 Consensus size: 43
97402 CCAGGGGCCT
* * * * * * *
97412 AGGTT-CCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCT
1 AGGTTGCCGATGGTGCCCGAGGCTCCCACATGACCAAGGACCA
* * * * * * *
97454 AGGTTGCCGATGATGTCCGAGGCTCTCGCACGACCAAGGGCCT
1 AGGTTGCCGATGGTGCCCGAGGCTCCCACATGACCAAGGACCA
* * * * *
97497 AGGTTGCCGATGGTCCCCGAGGCTCTCGCACGACCAAAGG-CCT
1 AGGTTGCCGATGGTGCCCGAGGCTCCCACATGACC-AAGGACCA
* * *
97540 AGGTTGCCGATAGTGCCCGAGGCTCCCACATGACCAAGGGCCT
1 AGGTTGCCGATGGTGCCCGAGGCTCCCACATGACCAAGGACCA
* *
97583 AGGTTGCCGATGGTGTCCGAGGCTCCTACAT-ATCCAAGGCACCA
1 AGGTTGCCGATGGTGCCCGAGGCTCCCACATGA-CCAAGG-ACCA
* *
97627 AGG-TGCCGATGCTGCTCGAGG
1 AGGTTGCCGATGGTGCCCGAGG
97648 TTCTCACACC
Statistics
Matches: 169, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
42 10 0.06
43 150 0.89
44 9 0.05
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (43 bp):
AGGTTGCCGATGGTGCCCGAGGCTCCCACATGACCAAGGACCA
Found at i:97634 original size:129 final size:128
Alignment explanation
Indices: 97396--97637 Score: 310
Period size: 129 Copynumber: 1.9 Consensus size: 128
97386 TGAGGGGGCG
** * * * * *
97396 GCACGACCAGGGGCCTAGGTTCCGATGGTGTCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGC
1 GCACGACCAAAGGCCTAGGTTCCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
* * *
97461 CGATGATGTCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTCCCCGAGGCTCTC
66 CGATGATGTCCGAGGCTCTCACACGACCAAGGACCAAGGTTGCCGATGGTCCCCGAGGCTCTC
*
97524 GCACGACCAAAGGCCTAGGTTGCCGATAGTGCCCGAGGCTCCCACATGACCAAGGGCCTAGGTTG
1 GCACGACCAAAGGCCTAGGTT-CCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTG
* *
97589 CCGATGGTGTCCGAGGCTC-CTACA-TATCCAAGGCACCAAGG-TGCCGATG
65 CCGATGATGTCCGAGGCTCTC-ACACGA-CCAAGG-ACCAAGGTTGCCGATG
97638 CTGCTCGAGG
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
128 21 0.22
129 71 0.73
130 5 0.05
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (128 bp):
GCACGACCAAAGGCCTAGGTTCCGATAGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGC
CGATGATGTCCGAGGCTCTCACACGACCAAGGACCAAGGTTGCCGATGGTCCCCGAGGCTCTC
Found at i:97918 original size:24 final size:25
Alignment explanation
Indices: 97883--97961 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 25
97873 TTTCTATATT
*
97883 CCGGG-ATGGCTCACCGGAGCACCG
1 CCGGGAATAGCTCACCGGAGCACCG
*
97907 CCGGGAA-AGCTCACCGGACCACCG
1 CCGGGAATAGCTCACCGGAGCACCG
* * **
97931 CC-GGAATGGATCGTCGGAGCACCG
1 CCGGGAATAGCTCACCGGAGCACCG
97955 CCGGGAA
1 CCGGGAA
97962 CCGTACCAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
23 4 0.09
24 36 0.80
25 5 0.11
ACGTcount: A:0.22, C:0.35, G:0.35, T:0.08
Consensus pattern (25 bp):
CCGGGAATAGCTCACCGGAGCACCG
Found at i:101842 original size:43 final size:40
Alignment explanation
Indices: 101733--102569 Score: 629
Period size: 43 Copynumber: 19.7 Consensus size: 40
101723 CATCCAACGT
* * * **
101733 CCTAGGTTGCCTATGGTGTCCGAGGCTCTCGCACATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CC-AGGG
* * * * *
101776 CCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACA-CC-AGG-G
* * *
101819 CCAAGGGGCCGATGGTGCCCGAGGCTCCCGCACGAACAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC--ACCAGGG
* * * * * *
101861 CCTAGGTTACCGATAGTGCACGAAGCTCCGGCAAGACCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGC-ACACC-AGGG
* **
101904 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CC-AGGG
*
101947 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCA-GGG
* * * * *
101989 CCTAGGTCACCGATGGTATCCC-AGGCTTCCGCACATCCAAGT
1 CCTAGGT-GCCGATGGT-GCCCGAGGCTCCCGCACA-CCAGGG
* * *
102031 ACTAAGGTGCCGATGCTGCCCGAGGCTCCCGTACAACCAAGGG
1 CCT-AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
* *
102074 CCTAGGTGCTGATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
*
102115 CCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGG
1 CCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCA-GGG
* *
102158 CCTAGGGTGCCGATGGTGCCCGAGGCTCCGGCACGACTAGGGG
1 CCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCA-GGG
* * *
102201 CCTAGTTTACCGATGGTGCCCGAGGCTCCCCCACGACCAGGGG
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCA-GGG
*
102244 CCTAGGTTGTCGATGGT-CCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCA-GGG
* *
102286 CCTAGGTTACCGATGGTGTCCGA-GCTCCCGCACAGCCAGGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCA-GGG
* * *
102328 CCTAGGTTCCGATGGTGTCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
* * *
102370 CCTAGGTTGCCGATGGTGTCCGAGGCTCTCACACGACCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
* *
102413 CCTAGGTTGCTGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
* *
102456 CCTAGGTTGCCGATGGTGGCTGAGGCTCCCGCACGACCAAGGG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACC-AGGG
* * * *
102499 CCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCATATCCAAGGCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CC-AGG-G
* * *
102543 CCAAGGTGCCGATGCTGCTCGAGGCTC
1 CCTAGGTGCCGATGGTGCCCGAGGCTC
102570 TTGCACCACT
Statistics
Matches: 673, Mismatches: 92, Indels: 58
0.82 0.11 0.07
Matches are distributed among these distances:
41 46 0.07
42 202 0.30
43 414 0.62
44 10 0.01
45 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (40 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAGGG
Found at i:102361 original size:255 final size:253
Alignment explanation
Indices: 101733--102569 Score: 941
Period size: 255 Copynumber: 3.3 Consensus size: 253
101723 CATCCAACGT
* * * * * * * *
101733 CCTAGGTTGCCTATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGT-CCCGAGGCTCCCGCACATCCAAGGACTAAGGTACCGATGCTGCCCGA
* * * * * * *
101798 GGCTCCCGCACATCCGAGGCACCAAGGGGCCGATGGTGCCCGAGGCTCCCGCACGAACAAGGGCC
65 GGCTCCCGCACAACCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* * * * * *
101863 TAGGTTACCGATAGTGCACGAAGCTC-CGGCAAGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
129 TAGGTTGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
** * *
101927 GGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
193 GGCT-CCGCACGA-CCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
** * * *
101989 CCTAGGTCACCGATGGTATCCC-AGGCTTCCGCACATCCAAGTACTAAGGTGCCGATGCTGCCCG
1 CCTAGGTTGCCGATGG--TCCCGAGGCTCCCGCACATCCAAGGACTAAGGTACCGATGCTGCCCG
* *
102053 AGGCTCCCGTACAACCAAGGGCCTAGGTGCTGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCC
64 AGGCTCCCGCACAACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* * *
102117 TAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGATGGTGCCCGAG
129 TAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
* * * *
102182 GCTCCGGCACGACTAGGGGCCTAGTTTACCGATGGTGCCCGAGGCTCCCCCACGACCAGGGG
194 GCTCC-GCACGACCAAGGGCCTAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * *
102244 CCTAGGTTGTCGATGGTCCCGAGGCTCCCGCACGA-CCAGGGGCCT-AGGTTACCGATGGTGTCC
1 CCTAGGTTGCCGATGGTCCCGAGGCTCCCGCAC-ATCCA-AGGACTAAGG-TACCGATGCTGCCC
* * * *
102307 GA-GCTCCCGCACAGCCAGGGGCCTAGGTTCCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGC
63 GAGGCTCCCGCACAACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* * *
102371 CTAGGTTGCCGATGGTGTCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGA
128 CTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
102436 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCTGAGGCTCCCGCACGACCAAGGG
193 GGCTC-CGCACGACCAAGGGCCTA-GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * * *
102499 CCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCATATCCAAGGCACCAAGGTGCCGATGCTGCTCG
1 CCTAGGTTGCCGATGGT-CCCGAGGCTCCCGCACATCCAAGG-ACTAAGGTACCGATGCTGCCCG
102564 AGGCTC
64 AGGCTC
102570 TTGCACCACT
Statistics
Matches: 487, Mismatches: 76, Indels: 35
0.81 0.13 0.06
Matches are distributed among these distances:
253 6 0.01
254 140 0.29
255 234 0.48
256 97 0.20
257 9 0.02
258 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (253 bp):
CCTAGGTTGCCGATGGTCCCGAGGCTCCCGCACATCCAAGGACTAAGGTACCGATGCTGCCCGAG
GCTCCCGCACAACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
GGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
TCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:102540 original size:86 final size:86
Alignment explanation
Indices: 101733--102531 Score: 794
Period size: 86 Copynumber: 9.4 Consensus size: 86
101723 CATCCAACGT
* * ** * * * *
101733 CCTAGGTTGCCTATGGTGTCCGAGGCT-CTCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCT-GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
101795 CGAGGCTCCCGCAC-ATCCGAGGCA
64 CGAGGCTCCCGCACGA-CCAAGG-G
* * * * * * *
101819 CCAAGG-GGCCGATGGTGCCCGAGGCTCCCGCACGAACAAGGGCCTAGGTTACCGATAGTGCACG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
101883 AAGCTCCGGCAAGACCAAGGG
66 AGGCTCCCGCACGACCAAGGG
* * ** *
101904 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
*
101967 GAGGCTCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAAGGG
** * ** *
101989 CCTAGGTCACCGATGGTATCCC-AGGCTTCC-GCAC-ATCCAA-GTACTAAGG-TGCCGATGCTG
1 CCTAGGTTGCCGATGGT-GCCCGAGGC-TCCTGCACGA-CCAAGGGCCT-AGGTTGCCGATGGTG
* *
102049 CCCGAGGCTCCCGTACAACCAAGGG
62 CCCGAGGCTCCCGCACGACCAAGGG
* *
102074 CCTAGG-TGCTGATGGT-CCCGAGGCT-CTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
102136 GAGGCTCTCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAAGGG
* * * * * *
102158 CCTAGGGTGCCGATGGTGCCCGAGGCTCCGGCACGACTAGGGGCCTAGTTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
102223 AGGCTCCCCCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGG
* * * * *
102244 CCTAGGTTGTCGATGGT-CCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
102308 A-GCTCCCGCAC-AGCCAGGGG
66 AGGCTCCCGCACGA-CCAAGGG
* *
102328 CCTAGGTT-CCGATGGTGTCCGAGGCT-CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
102391 GAGGCTCTCACACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGG
* * *
102413 CCTAGGTTGCTGATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
102477 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGG
*
102499 CCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCA
102532 TATCCAAGGC
Statistics
Matches: 601, Mismatches: 87, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
81 1 0.00
82 4 0.01
83 24 0.04
84 115 0.19
85 210 0.35
86 243 0.40
87 4 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGG
Found at i:107730 original size:13 final size:13
Alignment explanation
Indices: 107714--107740 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
107704 ACACCACTAG
107714 AAAAAGAAAACAC
1 AAAAAGAAAACAC
107727 AAAAAGAAAACAC
1 AAAAAGAAAACAC
107740 A
1 A
107741 TTCAGCCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.15, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAACAC
Found at i:107734 original size:19 final size:19
Alignment explanation
Indices: 107697--107736 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
107687 AAGAGCAAAT
* **
107697 AAAGAAAACACCACTAGAA
1 AAAGAAAACACAAAAAGAA
107716 AAAGAAAACACAAAAAGAA
1 AAAGAAAACACAAAAAGAA
107735 AA
1 AA
107737 CACATTCAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.15, G:0.10, T:0.03
Consensus pattern (19 bp):
AAAGAAAACACAAAAAGAA
Found at i:112669 original size:58 final size:59
Alignment explanation
Indices: 112579--112699 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
112569 GGCAGGGACA
** *
112579 GGGACGATTCATTCATTGTTGGGTACTGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTACTGGGTACTGAACATGCAACGGTATCTGAATTCTACCTTTT
* *
112637 GGGACGGTTCATTCATTACTGGGTA-TCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTACTGGGTACT-GAACATGCAACGGTATCTGAATTCTACCTTTT
112696 GGGA
1 GGGA
112700 TTAGGGAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 1 0.02
58 48 0.86
59 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTACTGGGTACTGAACATGCAACGGTATCTGAATTCTACCTTTT
Done.